Multiple sequence alignment - TraesCS1A01G166600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G166600 chr1A 100.000 2678 0 0 1 2678 299426957 299424280 0.000000e+00 4946
1 TraesCS1A01G166600 chr1A 77.524 614 118 11 1070 1667 298646714 298646105 4.240000e-93 351
2 TraesCS1A01G166600 chr1A 85.498 331 46 2 1338 1667 298636165 298635836 7.100000e-91 344
3 TraesCS1A01G166600 chr1B 94.453 1947 64 23 519 2443 329961404 329959480 0.000000e+00 2957
4 TraesCS1A01G166600 chr1D 91.316 2211 104 21 519 2678 247838475 247840648 0.000000e+00 2939
5 TraesCS1A01G166600 chr1D 86.502 526 67 4 2154 2678 266233182 266233704 2.310000e-160 575
6 TraesCS1A01G166600 chr6A 85.870 828 87 18 910 1728 48193995 48193189 0.000000e+00 854
7 TraesCS1A01G166600 chr6D 89.805 667 60 6 1018 1679 36629124 36628461 0.000000e+00 848
8 TraesCS1A01G166600 chr6D 87.619 525 62 2 2154 2678 326767346 326767867 8.200000e-170 606
9 TraesCS1A01G166600 chr6D 87.452 526 63 3 2154 2678 136122544 136122021 1.060000e-168 603
10 TraesCS1A01G166600 chr6B 89.355 667 63 6 1018 1679 84927787 84927124 0.000000e+00 832
11 TraesCS1A01G166600 chr5A 87.048 525 62 3 2154 2678 70588893 70588375 2.970000e-164 588
12 TraesCS1A01G166600 chrUn 85.579 527 72 2 2154 2678 77426386 77425862 1.400000e-152 549
13 TraesCS1A01G166600 chr5D 88.194 432 49 1 2154 2585 75376705 75376276 5.110000e-142 514
14 TraesCS1A01G166600 chr4B 84.091 528 76 6 2154 2678 548175335 548175857 1.110000e-138 503
15 TraesCS1A01G166600 chr7A 94.154 325 17 2 197 520 189713087 189712764 6.660000e-136 494
16 TraesCS1A01G166600 chr7A 78.647 665 111 26 1023 1667 120793508 120794161 1.920000e-111 412
17 TraesCS1A01G166600 chr7A 88.088 319 36 2 200 516 427559156 427558838 7.000000e-101 377
18 TraesCS1A01G166600 chr5B 93.433 335 19 3 197 530 682461809 682461477 6.660000e-136 494
19 TraesCS1A01G166600 chr5B 93.603 297 16 3 235 530 682421496 682421202 8.800000e-120 440
20 TraesCS1A01G166600 chr2B 93.769 321 20 0 197 517 63263493 63263173 1.440000e-132 483
21 TraesCS1A01G166600 chr2B 91.824 318 25 1 200 517 772719891 772719575 2.450000e-120 442
22 TraesCS1A01G166600 chr2B 90.654 321 26 2 197 517 151622327 151622643 8.860000e-115 424
23 TraesCS1A01G166600 chr7B 78.812 623 102 21 1064 1665 75790773 75791386 2.500000e-105 392
24 TraesCS1A01G166600 chr4A 88.474 321 34 3 200 517 622292421 622292101 4.180000e-103 385
25 TraesCS1A01G166600 chr3A 87.273 330 38 3 197 524 605856766 605857093 9.050000e-100 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G166600 chr1A 299424280 299426957 2677 True 4946 4946 100.000 1 2678 1 chr1A.!!$R3 2677
1 TraesCS1A01G166600 chr1A 298646105 298646714 609 True 351 351 77.524 1070 1667 1 chr1A.!!$R2 597
2 TraesCS1A01G166600 chr1B 329959480 329961404 1924 True 2957 2957 94.453 519 2443 1 chr1B.!!$R1 1924
3 TraesCS1A01G166600 chr1D 247838475 247840648 2173 False 2939 2939 91.316 519 2678 1 chr1D.!!$F1 2159
4 TraesCS1A01G166600 chr1D 266233182 266233704 522 False 575 575 86.502 2154 2678 1 chr1D.!!$F2 524
5 TraesCS1A01G166600 chr6A 48193189 48193995 806 True 854 854 85.870 910 1728 1 chr6A.!!$R1 818
6 TraesCS1A01G166600 chr6D 36628461 36629124 663 True 848 848 89.805 1018 1679 1 chr6D.!!$R1 661
7 TraesCS1A01G166600 chr6D 326767346 326767867 521 False 606 606 87.619 2154 2678 1 chr6D.!!$F1 524
8 TraesCS1A01G166600 chr6D 136122021 136122544 523 True 603 603 87.452 2154 2678 1 chr6D.!!$R2 524
9 TraesCS1A01G166600 chr6B 84927124 84927787 663 True 832 832 89.355 1018 1679 1 chr6B.!!$R1 661
10 TraesCS1A01G166600 chr5A 70588375 70588893 518 True 588 588 87.048 2154 2678 1 chr5A.!!$R1 524
11 TraesCS1A01G166600 chrUn 77425862 77426386 524 True 549 549 85.579 2154 2678 1 chrUn.!!$R1 524
12 TraesCS1A01G166600 chr4B 548175335 548175857 522 False 503 503 84.091 2154 2678 1 chr4B.!!$F1 524
13 TraesCS1A01G166600 chr7A 120793508 120794161 653 False 412 412 78.647 1023 1667 1 chr7A.!!$F1 644
14 TraesCS1A01G166600 chr7B 75790773 75791386 613 False 392 392 78.812 1064 1665 1 chr7B.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 419 0.030235 GTTTCGGCAACCCTGTTCAC 59.97 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 2422 1.001633 CTTGGCCAGCAAAAGCTCATT 59.998 47.619 5.11 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.685276 ATATGTGTTCTTATCCTGTGAATCAAA 57.315 29.630 0.00 0.00 0.00 2.69
54 55 8.585471 ATGTGTTCTTATCCTGTGAATCAAAT 57.415 30.769 0.00 0.00 0.00 2.32
55 56 7.819644 TGTGTTCTTATCCTGTGAATCAAATG 58.180 34.615 0.00 0.00 0.00 2.32
56 57 7.665145 TGTGTTCTTATCCTGTGAATCAAATGA 59.335 33.333 0.00 0.00 0.00 2.57
57 58 8.680903 GTGTTCTTATCCTGTGAATCAAATGAT 58.319 33.333 0.00 0.00 36.07 2.45
58 59 9.904198 TGTTCTTATCCTGTGAATCAAATGATA 57.096 29.630 0.00 0.00 33.73 2.15
86 87 9.561069 TTTATTTTCTATTCCTATGGTCTGAGC 57.439 33.333 0.00 0.00 0.00 4.26
87 88 6.560003 TTTTCTATTCCTATGGTCTGAGCA 57.440 37.500 12.41 12.41 0.00 4.26
88 89 5.537300 TTCTATTCCTATGGTCTGAGCAC 57.463 43.478 12.27 0.00 0.00 4.40
89 90 4.809193 TCTATTCCTATGGTCTGAGCACT 58.191 43.478 12.27 4.59 0.00 4.40
90 91 5.211973 TCTATTCCTATGGTCTGAGCACTT 58.788 41.667 12.27 0.00 0.00 3.16
91 92 6.373759 TCTATTCCTATGGTCTGAGCACTTA 58.626 40.000 12.27 0.94 0.00 2.24
92 93 7.013220 TCTATTCCTATGGTCTGAGCACTTAT 58.987 38.462 12.27 0.00 0.00 1.73
93 94 8.170730 TCTATTCCTATGGTCTGAGCACTTATA 58.829 37.037 12.27 0.00 0.00 0.98
94 95 7.618019 ATTCCTATGGTCTGAGCACTTATAA 57.382 36.000 12.27 4.14 0.00 0.98
95 96 6.656632 TCCTATGGTCTGAGCACTTATAAG 57.343 41.667 12.27 11.05 0.00 1.73
96 97 6.373759 TCCTATGGTCTGAGCACTTATAAGA 58.626 40.000 19.38 0.00 0.00 2.10
97 98 7.013220 TCCTATGGTCTGAGCACTTATAAGAT 58.987 38.462 19.38 4.56 0.00 2.40
98 99 7.510685 TCCTATGGTCTGAGCACTTATAAGATT 59.489 37.037 19.38 3.91 0.00 2.40
99 100 7.816995 CCTATGGTCTGAGCACTTATAAGATTC 59.183 40.741 19.38 12.51 0.00 2.52
100 101 6.544928 TGGTCTGAGCACTTATAAGATTCA 57.455 37.500 19.38 15.76 0.00 2.57
101 102 6.946340 TGGTCTGAGCACTTATAAGATTCAA 58.054 36.000 19.38 7.55 0.00 2.69
102 103 7.044181 TGGTCTGAGCACTTATAAGATTCAAG 58.956 38.462 19.38 10.29 0.00 3.02
103 104 7.093333 TGGTCTGAGCACTTATAAGATTCAAGA 60.093 37.037 19.38 12.17 0.00 3.02
104 105 7.930865 GGTCTGAGCACTTATAAGATTCAAGAT 59.069 37.037 19.38 0.71 0.00 2.40
105 106 9.973450 GTCTGAGCACTTATAAGATTCAAGATA 57.027 33.333 19.38 3.67 0.00 1.98
106 107 9.973450 TCTGAGCACTTATAAGATTCAAGATAC 57.027 33.333 19.38 0.88 0.00 2.24
107 108 9.755804 CTGAGCACTTATAAGATTCAAGATACA 57.244 33.333 19.38 4.71 0.00 2.29
162 163 8.786898 TCTTATGCAATTCTTATGCTATGAACC 58.213 33.333 0.00 0.00 44.14 3.62
163 164 6.964807 ATGCAATTCTTATGCTATGAACCA 57.035 33.333 0.00 0.00 44.14 3.67
164 165 6.772360 TGCAATTCTTATGCTATGAACCAA 57.228 33.333 0.00 0.00 44.14 3.67
165 166 7.167924 TGCAATTCTTATGCTATGAACCAAA 57.832 32.000 0.00 0.00 44.14 3.28
166 167 7.259882 TGCAATTCTTATGCTATGAACCAAAG 58.740 34.615 0.00 0.00 44.14 2.77
167 168 7.122501 TGCAATTCTTATGCTATGAACCAAAGA 59.877 33.333 0.00 0.00 44.14 2.52
168 169 8.139989 GCAATTCTTATGCTATGAACCAAAGAT 58.860 33.333 0.00 0.00 40.64 2.40
171 172 7.969536 TCTTATGCTATGAACCAAAGATAGC 57.030 36.000 0.00 0.00 43.26 2.97
172 173 6.936900 TCTTATGCTATGAACCAAAGATAGCC 59.063 38.462 0.00 0.00 42.60 3.93
173 174 4.778213 TGCTATGAACCAAAGATAGCCT 57.222 40.909 0.00 0.00 42.60 4.58
174 175 5.887214 TGCTATGAACCAAAGATAGCCTA 57.113 39.130 0.00 0.00 42.60 3.93
175 176 6.247229 TGCTATGAACCAAAGATAGCCTAA 57.753 37.500 0.00 0.00 42.60 2.69
176 177 6.291377 TGCTATGAACCAAAGATAGCCTAAG 58.709 40.000 0.00 0.00 42.60 2.18
177 178 6.126768 TGCTATGAACCAAAGATAGCCTAAGT 60.127 38.462 0.00 0.00 42.60 2.24
178 179 6.768381 GCTATGAACCAAAGATAGCCTAAGTT 59.232 38.462 0.00 0.00 39.01 2.66
179 180 7.254932 GCTATGAACCAAAGATAGCCTAAGTTG 60.255 40.741 0.00 0.00 39.01 3.16
180 181 5.253330 TGAACCAAAGATAGCCTAAGTTGG 58.747 41.667 8.94 8.94 41.06 3.77
181 182 4.236527 ACCAAAGATAGCCTAAGTTGGG 57.763 45.455 13.10 0.00 39.87 4.12
182 183 3.850173 ACCAAAGATAGCCTAAGTTGGGA 59.150 43.478 9.88 0.00 39.87 4.37
183 184 4.478686 ACCAAAGATAGCCTAAGTTGGGAT 59.521 41.667 9.88 5.16 39.87 3.85
184 185 5.670361 ACCAAAGATAGCCTAAGTTGGGATA 59.330 40.000 9.88 7.68 39.87 2.59
185 186 6.159751 ACCAAAGATAGCCTAAGTTGGGATAA 59.840 38.462 9.88 0.00 39.87 1.75
186 187 6.712547 CCAAAGATAGCCTAAGTTGGGATAAG 59.287 42.308 9.88 0.00 33.40 1.73
187 188 6.441088 AAGATAGCCTAAGTTGGGATAAGG 57.559 41.667 9.88 0.00 0.00 2.69
188 189 5.727630 AGATAGCCTAAGTTGGGATAAGGA 58.272 41.667 9.88 0.00 0.00 3.36
189 190 6.335115 AGATAGCCTAAGTTGGGATAAGGAT 58.665 40.000 9.88 0.00 0.00 3.24
190 191 4.984146 AGCCTAAGTTGGGATAAGGATC 57.016 45.455 9.88 0.00 0.00 3.36
191 192 3.325135 AGCCTAAGTTGGGATAAGGATCG 59.675 47.826 9.88 0.00 32.28 3.69
192 193 3.557264 GCCTAAGTTGGGATAAGGATCGG 60.557 52.174 9.88 0.00 32.28 4.18
193 194 3.901844 CCTAAGTTGGGATAAGGATCGGA 59.098 47.826 0.00 0.00 32.28 4.55
194 195 3.840124 AAGTTGGGATAAGGATCGGAC 57.160 47.619 0.00 0.00 32.28 4.79
195 196 1.687123 AGTTGGGATAAGGATCGGACG 59.313 52.381 0.00 0.00 32.28 4.79
196 197 1.684983 GTTGGGATAAGGATCGGACGA 59.315 52.381 0.00 0.00 32.28 4.20
197 198 1.325355 TGGGATAAGGATCGGACGAC 58.675 55.000 0.00 0.00 32.28 4.34
198 199 0.602060 GGGATAAGGATCGGACGACC 59.398 60.000 0.00 1.03 32.28 4.79
199 200 0.602060 GGATAAGGATCGGACGACCC 59.398 60.000 0.00 0.00 32.28 4.46
200 201 1.618487 GATAAGGATCGGACGACCCT 58.382 55.000 0.73 0.73 40.67 4.34
201 202 2.553904 GGATAAGGATCGGACGACCCTA 60.554 54.545 8.27 1.74 37.09 3.53
202 203 2.267174 TAAGGATCGGACGACCCTAG 57.733 55.000 8.27 0.00 37.09 3.02
203 204 0.467659 AAGGATCGGACGACCCTAGG 60.468 60.000 8.27 0.06 37.09 3.02
204 205 1.152798 GGATCGGACGACCCTAGGT 60.153 63.158 8.29 0.00 39.44 3.08
214 215 2.105006 GACCCTAGGTCCGGTTTTTC 57.895 55.000 8.29 0.00 46.19 2.29
215 216 0.322648 ACCCTAGGTCCGGTTTTTCG 59.677 55.000 8.29 0.00 0.00 3.46
216 217 4.875338 GACCCTAGGTCCGGTTTTTCGG 62.875 59.091 8.29 0.00 46.19 4.30
224 225 1.705727 CGGTTTTTCGGATCGGACG 59.294 57.895 1.88 0.00 0.00 4.79
225 226 0.733566 CGGTTTTTCGGATCGGACGA 60.734 55.000 1.88 0.00 38.78 4.20
226 227 0.717784 GGTTTTTCGGATCGGACGAC 59.282 55.000 1.88 2.51 40.45 4.34
227 228 0.364515 GTTTTTCGGATCGGACGACG 59.635 55.000 1.88 0.00 40.45 5.12
243 244 4.053067 CGACGGCGTCTTAGTGTC 57.947 61.111 33.90 9.65 0.00 3.67
244 245 1.208358 CGACGGCGTCTTAGTGTCA 59.792 57.895 33.90 0.00 0.00 3.58
245 246 0.179171 CGACGGCGTCTTAGTGTCAT 60.179 55.000 33.90 0.00 0.00 3.06
246 247 1.731424 CGACGGCGTCTTAGTGTCATT 60.731 52.381 33.90 0.00 0.00 2.57
247 248 2.334838 GACGGCGTCTTAGTGTCATTT 58.665 47.619 31.15 0.00 0.00 2.32
248 249 2.735134 GACGGCGTCTTAGTGTCATTTT 59.265 45.455 31.15 0.00 0.00 1.82
249 250 3.135994 ACGGCGTCTTAGTGTCATTTTT 58.864 40.909 6.77 0.00 0.00 1.94
267 268 2.461897 TTTTTCGTGAAGGCGTTGTC 57.538 45.000 0.00 0.00 0.00 3.18
268 269 1.658994 TTTTCGTGAAGGCGTTGTCT 58.341 45.000 0.00 0.00 0.00 3.41
269 270 1.658994 TTTCGTGAAGGCGTTGTCTT 58.341 45.000 0.00 0.00 0.00 3.01
270 271 0.934496 TTCGTGAAGGCGTTGTCTTG 59.066 50.000 0.00 0.00 0.00 3.02
271 272 0.179094 TCGTGAAGGCGTTGTCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
272 273 0.655733 CGTGAAGGCGTTGTCTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
273 274 1.063469 CGTGAAGGCGTTGTCTTGTTT 59.937 47.619 0.00 0.00 0.00 2.83
274 275 2.450160 GTGAAGGCGTTGTCTTGTTTG 58.550 47.619 0.00 0.00 0.00 2.93
275 276 1.202245 TGAAGGCGTTGTCTTGTTTGC 60.202 47.619 0.00 0.00 0.00 3.68
276 277 1.065551 GAAGGCGTTGTCTTGTTTGCT 59.934 47.619 0.00 0.00 0.00 3.91
277 278 0.663153 AGGCGTTGTCTTGTTTGCTC 59.337 50.000 0.00 0.00 0.00 4.26
278 279 0.657368 GGCGTTGTCTTGTTTGCTCG 60.657 55.000 0.00 0.00 0.00 5.03
279 280 1.262166 GCGTTGTCTTGTTTGCTCGC 61.262 55.000 0.00 0.00 36.06 5.03
280 281 0.986874 CGTTGTCTTGTTTGCTCGCG 60.987 55.000 0.00 0.00 0.00 5.87
281 282 0.657368 GTTGTCTTGTTTGCTCGCGG 60.657 55.000 6.13 0.00 0.00 6.46
282 283 1.092921 TTGTCTTGTTTGCTCGCGGT 61.093 50.000 6.13 0.00 0.00 5.68
283 284 1.082756 GTCTTGTTTGCTCGCGGTG 60.083 57.895 6.13 0.07 0.00 4.94
284 285 1.522806 TCTTGTTTGCTCGCGGTGT 60.523 52.632 6.13 0.00 0.00 4.16
285 286 1.082756 CTTGTTTGCTCGCGGTGTC 60.083 57.895 6.13 0.00 0.00 3.67
286 287 2.443957 CTTGTTTGCTCGCGGTGTCC 62.444 60.000 6.13 0.00 0.00 4.02
287 288 2.665185 GTTTGCTCGCGGTGTCCT 60.665 61.111 6.13 0.00 0.00 3.85
288 289 2.357034 TTTGCTCGCGGTGTCCTC 60.357 61.111 6.13 0.00 0.00 3.71
289 290 4.717629 TTGCTCGCGGTGTCCTCG 62.718 66.667 6.13 0.00 0.00 4.63
292 293 4.778415 CTCGCGGTGTCCTCGGTG 62.778 72.222 6.13 0.00 0.00 4.94
295 296 3.755628 GCGGTGTCCTCGGTGCTA 61.756 66.667 0.00 0.00 0.00 3.49
296 297 2.490217 CGGTGTCCTCGGTGCTAG 59.510 66.667 0.00 0.00 0.00 3.42
297 298 2.044555 CGGTGTCCTCGGTGCTAGA 61.045 63.158 0.00 0.00 0.00 2.43
298 299 1.384989 CGGTGTCCTCGGTGCTAGAT 61.385 60.000 0.00 0.00 0.00 1.98
299 300 0.103208 GGTGTCCTCGGTGCTAGATG 59.897 60.000 0.00 0.00 0.00 2.90
300 301 0.818296 GTGTCCTCGGTGCTAGATGT 59.182 55.000 0.00 0.00 0.00 3.06
301 302 0.817654 TGTCCTCGGTGCTAGATGTG 59.182 55.000 0.00 0.00 0.00 3.21
302 303 1.103803 GTCCTCGGTGCTAGATGTGA 58.896 55.000 0.00 0.00 0.00 3.58
303 304 1.476891 GTCCTCGGTGCTAGATGTGAA 59.523 52.381 0.00 0.00 0.00 3.18
304 305 1.751351 TCCTCGGTGCTAGATGTGAAG 59.249 52.381 0.00 0.00 0.00 3.02
305 306 1.751351 CCTCGGTGCTAGATGTGAAGA 59.249 52.381 0.00 0.00 0.00 2.87
306 307 2.363680 CCTCGGTGCTAGATGTGAAGAT 59.636 50.000 0.00 0.00 0.00 2.40
307 308 3.379240 CTCGGTGCTAGATGTGAAGATG 58.621 50.000 0.00 0.00 0.00 2.90
308 309 2.760650 TCGGTGCTAGATGTGAAGATGT 59.239 45.455 0.00 0.00 0.00 3.06
309 310 3.195610 TCGGTGCTAGATGTGAAGATGTT 59.804 43.478 0.00 0.00 0.00 2.71
310 311 3.308053 CGGTGCTAGATGTGAAGATGTTG 59.692 47.826 0.00 0.00 0.00 3.33
311 312 3.624861 GGTGCTAGATGTGAAGATGTTGG 59.375 47.826 0.00 0.00 0.00 3.77
312 313 4.256920 GTGCTAGATGTGAAGATGTTGGT 58.743 43.478 0.00 0.00 0.00 3.67
313 314 4.331168 GTGCTAGATGTGAAGATGTTGGTC 59.669 45.833 0.00 0.00 0.00 4.02
314 315 3.553511 GCTAGATGTGAAGATGTTGGTCG 59.446 47.826 0.00 0.00 0.00 4.79
315 316 3.685139 AGATGTGAAGATGTTGGTCGT 57.315 42.857 0.00 0.00 0.00 4.34
316 317 3.589988 AGATGTGAAGATGTTGGTCGTC 58.410 45.455 0.00 0.00 0.00 4.20
317 318 3.259374 AGATGTGAAGATGTTGGTCGTCT 59.741 43.478 0.00 0.00 43.47 4.18
318 319 4.462834 AGATGTGAAGATGTTGGTCGTCTA 59.537 41.667 0.00 0.00 41.07 2.59
319 320 4.174411 TGTGAAGATGTTGGTCGTCTAG 57.826 45.455 0.00 0.00 41.07 2.43
320 321 3.572682 TGTGAAGATGTTGGTCGTCTAGT 59.427 43.478 0.00 0.00 41.07 2.57
321 322 4.038763 TGTGAAGATGTTGGTCGTCTAGTT 59.961 41.667 0.00 0.00 41.07 2.24
322 323 4.386049 GTGAAGATGTTGGTCGTCTAGTTG 59.614 45.833 0.00 0.00 41.07 3.16
323 324 4.038763 TGAAGATGTTGGTCGTCTAGTTGT 59.961 41.667 0.00 0.00 41.07 3.32
324 325 4.602340 AGATGTTGGTCGTCTAGTTGTT 57.398 40.909 0.00 0.00 40.25 2.83
325 326 4.307432 AGATGTTGGTCGTCTAGTTGTTG 58.693 43.478 0.00 0.00 40.25 3.33
326 327 2.206750 TGTTGGTCGTCTAGTTGTTGC 58.793 47.619 0.00 0.00 0.00 4.17
327 328 2.159014 TGTTGGTCGTCTAGTTGTTGCT 60.159 45.455 0.00 0.00 0.00 3.91
328 329 2.870411 GTTGGTCGTCTAGTTGTTGCTT 59.130 45.455 0.00 0.00 0.00 3.91
329 330 2.479837 TGGTCGTCTAGTTGTTGCTTG 58.520 47.619 0.00 0.00 0.00 4.01
330 331 1.798813 GGTCGTCTAGTTGTTGCTTGG 59.201 52.381 0.00 0.00 0.00 3.61
331 332 1.798813 GTCGTCTAGTTGTTGCTTGGG 59.201 52.381 0.00 0.00 0.00 4.12
332 333 1.414919 TCGTCTAGTTGTTGCTTGGGT 59.585 47.619 0.00 0.00 0.00 4.51
333 334 2.158871 TCGTCTAGTTGTTGCTTGGGTT 60.159 45.455 0.00 0.00 0.00 4.11
334 335 2.032030 CGTCTAGTTGTTGCTTGGGTTG 60.032 50.000 0.00 0.00 0.00 3.77
335 336 1.953686 TCTAGTTGTTGCTTGGGTTGC 59.046 47.619 0.00 0.00 0.00 4.17
336 337 1.956477 CTAGTTGTTGCTTGGGTTGCT 59.044 47.619 0.00 0.00 0.00 3.91
337 338 1.194218 AGTTGTTGCTTGGGTTGCTT 58.806 45.000 0.00 0.00 0.00 3.91
338 339 1.136891 AGTTGTTGCTTGGGTTGCTTC 59.863 47.619 0.00 0.00 0.00 3.86
339 340 0.463620 TTGTTGCTTGGGTTGCTTCC 59.536 50.000 0.00 0.00 0.00 3.46
346 347 3.777556 GGGTTGCTTCCCAGGTTG 58.222 61.111 11.03 0.00 46.30 3.77
347 348 1.908299 GGGTTGCTTCCCAGGTTGG 60.908 63.158 11.03 0.00 46.30 3.77
348 349 2.574018 GGTTGCTTCCCAGGTTGGC 61.574 63.158 0.00 0.00 35.79 4.52
349 350 2.597217 TTGCTTCCCAGGTTGGCG 60.597 61.111 0.00 0.00 35.79 5.69
350 351 3.126703 TTGCTTCCCAGGTTGGCGA 62.127 57.895 0.00 0.00 35.79 5.54
351 352 2.747855 GCTTCCCAGGTTGGCGAG 60.748 66.667 0.00 0.00 35.79 5.03
352 353 2.750350 CTTCCCAGGTTGGCGAGT 59.250 61.111 0.00 0.00 35.79 4.18
353 354 1.073199 CTTCCCAGGTTGGCGAGTT 59.927 57.895 0.00 0.00 35.79 3.01
354 355 0.537371 CTTCCCAGGTTGGCGAGTTT 60.537 55.000 0.00 0.00 35.79 2.66
355 356 0.766131 TTCCCAGGTTGGCGAGTTTA 59.234 50.000 0.00 0.00 35.79 2.01
356 357 0.323629 TCCCAGGTTGGCGAGTTTAG 59.676 55.000 0.00 0.00 35.79 1.85
357 358 1.305930 CCCAGGTTGGCGAGTTTAGC 61.306 60.000 0.00 0.00 35.79 3.09
358 359 0.321653 CCAGGTTGGCGAGTTTAGCT 60.322 55.000 0.00 0.00 34.52 3.32
359 360 0.798776 CAGGTTGGCGAGTTTAGCTG 59.201 55.000 0.00 0.00 34.52 4.24
360 361 0.396811 AGGTTGGCGAGTTTAGCTGT 59.603 50.000 0.00 0.00 34.52 4.40
361 362 0.517316 GGTTGGCGAGTTTAGCTGTG 59.483 55.000 0.00 0.00 34.52 3.66
362 363 1.226746 GTTGGCGAGTTTAGCTGTGT 58.773 50.000 0.00 0.00 34.52 3.72
363 364 1.602377 GTTGGCGAGTTTAGCTGTGTT 59.398 47.619 0.00 0.00 34.52 3.32
364 365 1.961793 TGGCGAGTTTAGCTGTGTTT 58.038 45.000 0.00 0.00 34.52 2.83
365 366 2.294074 TGGCGAGTTTAGCTGTGTTTT 58.706 42.857 0.00 0.00 34.52 2.43
366 367 2.685897 TGGCGAGTTTAGCTGTGTTTTT 59.314 40.909 0.00 0.00 34.52 1.94
367 368 3.242936 TGGCGAGTTTAGCTGTGTTTTTC 60.243 43.478 0.00 0.00 34.52 2.29
368 369 3.003378 GGCGAGTTTAGCTGTGTTTTTCT 59.997 43.478 0.00 0.00 34.52 2.52
369 370 4.497507 GGCGAGTTTAGCTGTGTTTTTCTT 60.498 41.667 0.00 0.00 34.52 2.52
370 371 5.034797 GCGAGTTTAGCTGTGTTTTTCTTT 58.965 37.500 0.00 0.00 0.00 2.52
371 372 5.052370 GCGAGTTTAGCTGTGTTTTTCTTTG 60.052 40.000 0.00 0.00 0.00 2.77
372 373 6.027749 CGAGTTTAGCTGTGTTTTTCTTTGT 58.972 36.000 0.00 0.00 0.00 2.83
373 374 6.526674 CGAGTTTAGCTGTGTTTTTCTTTGTT 59.473 34.615 0.00 0.00 0.00 2.83
374 375 7.061789 CGAGTTTAGCTGTGTTTTTCTTTGTTT 59.938 33.333 0.00 0.00 0.00 2.83
375 376 8.017587 AGTTTAGCTGTGTTTTTCTTTGTTTG 57.982 30.769 0.00 0.00 0.00 2.93
376 377 6.959671 TTAGCTGTGTTTTTCTTTGTTTGG 57.040 33.333 0.00 0.00 0.00 3.28
377 378 4.252878 AGCTGTGTTTTTCTTTGTTTGGG 58.747 39.130 0.00 0.00 0.00 4.12
378 379 4.000325 GCTGTGTTTTTCTTTGTTTGGGT 59.000 39.130 0.00 0.00 0.00 4.51
379 380 4.092821 GCTGTGTTTTTCTTTGTTTGGGTC 59.907 41.667 0.00 0.00 0.00 4.46
380 381 4.238514 TGTGTTTTTCTTTGTTTGGGTCG 58.761 39.130 0.00 0.00 0.00 4.79
381 382 4.022242 TGTGTTTTTCTTTGTTTGGGTCGA 60.022 37.500 0.00 0.00 0.00 4.20
382 383 4.561213 GTGTTTTTCTTTGTTTGGGTCGAG 59.439 41.667 0.00 0.00 0.00 4.04
383 384 3.430333 TTTTCTTTGTTTGGGTCGAGC 57.570 42.857 5.93 5.93 0.00 5.03
384 385 2.341846 TTCTTTGTTTGGGTCGAGCT 57.658 45.000 15.18 0.00 0.00 4.09
385 386 2.341846 TCTTTGTTTGGGTCGAGCTT 57.658 45.000 15.18 0.00 0.00 3.74
386 387 2.218603 TCTTTGTTTGGGTCGAGCTTC 58.781 47.619 15.18 0.00 0.00 3.86
387 388 2.158813 TCTTTGTTTGGGTCGAGCTTCT 60.159 45.455 15.18 0.00 0.00 2.85
388 389 1.878953 TTGTTTGGGTCGAGCTTCTC 58.121 50.000 15.18 4.28 0.00 2.87
389 390 0.756294 TGTTTGGGTCGAGCTTCTCA 59.244 50.000 15.18 6.77 0.00 3.27
390 391 1.347707 TGTTTGGGTCGAGCTTCTCAT 59.652 47.619 15.18 0.00 0.00 2.90
391 392 1.734465 GTTTGGGTCGAGCTTCTCATG 59.266 52.381 15.18 0.00 0.00 3.07
392 393 0.976641 TTGGGTCGAGCTTCTCATGT 59.023 50.000 15.18 0.00 0.00 3.21
393 394 0.532573 TGGGTCGAGCTTCTCATGTC 59.467 55.000 15.18 0.00 0.00 3.06
394 395 0.820871 GGGTCGAGCTTCTCATGTCT 59.179 55.000 15.18 0.00 0.00 3.41
395 396 1.202359 GGGTCGAGCTTCTCATGTCTC 60.202 57.143 15.18 0.00 0.00 3.36
396 397 1.748493 GGTCGAGCTTCTCATGTCTCT 59.252 52.381 7.51 0.00 0.00 3.10
397 398 2.165437 GGTCGAGCTTCTCATGTCTCTT 59.835 50.000 7.51 0.00 0.00 2.85
398 399 3.367910 GGTCGAGCTTCTCATGTCTCTTT 60.368 47.826 7.51 0.00 0.00 2.52
399 400 3.611986 GTCGAGCTTCTCATGTCTCTTTG 59.388 47.826 0.00 0.00 0.00 2.77
400 401 3.256879 TCGAGCTTCTCATGTCTCTTTGT 59.743 43.478 0.00 0.00 0.00 2.83
401 402 3.993081 CGAGCTTCTCATGTCTCTTTGTT 59.007 43.478 0.00 0.00 0.00 2.83
402 403 4.450419 CGAGCTTCTCATGTCTCTTTGTTT 59.550 41.667 0.00 0.00 0.00 2.83
403 404 5.389307 CGAGCTTCTCATGTCTCTTTGTTTC 60.389 44.000 0.00 0.00 0.00 2.78
404 405 4.450419 AGCTTCTCATGTCTCTTTGTTTCG 59.550 41.667 0.00 0.00 0.00 3.46
405 406 4.377841 GCTTCTCATGTCTCTTTGTTTCGG 60.378 45.833 0.00 0.00 0.00 4.30
406 407 3.067106 TCTCATGTCTCTTTGTTTCGGC 58.933 45.455 0.00 0.00 0.00 5.54
407 408 2.807967 CTCATGTCTCTTTGTTTCGGCA 59.192 45.455 0.00 0.00 0.00 5.69
408 409 3.210227 TCATGTCTCTTTGTTTCGGCAA 58.790 40.909 0.00 0.00 0.00 4.52
409 410 3.003275 TCATGTCTCTTTGTTTCGGCAAC 59.997 43.478 0.00 0.00 35.71 4.17
410 411 1.673920 TGTCTCTTTGTTTCGGCAACC 59.326 47.619 0.00 0.00 33.97 3.77
411 412 1.001706 GTCTCTTTGTTTCGGCAACCC 60.002 52.381 0.00 0.00 33.97 4.11
412 413 1.133915 TCTCTTTGTTTCGGCAACCCT 60.134 47.619 0.00 0.00 33.97 4.34
413 414 1.001378 CTCTTTGTTTCGGCAACCCTG 60.001 52.381 0.00 0.00 33.97 4.45
414 415 0.744281 CTTTGTTTCGGCAACCCTGT 59.256 50.000 0.00 0.00 33.97 4.00
415 416 1.136110 CTTTGTTTCGGCAACCCTGTT 59.864 47.619 0.00 0.00 33.97 3.16
416 417 0.741915 TTGTTTCGGCAACCCTGTTC 59.258 50.000 0.00 0.00 33.97 3.18
417 418 0.394488 TGTTTCGGCAACCCTGTTCA 60.394 50.000 0.00 0.00 33.97 3.18
418 419 0.030235 GTTTCGGCAACCCTGTTCAC 59.970 55.000 0.00 0.00 0.00 3.18
419 420 1.440938 TTTCGGCAACCCTGTTCACG 61.441 55.000 0.00 0.00 0.00 4.35
420 421 4.025401 CGGCAACCCTGTTCACGC 62.025 66.667 0.00 0.00 0.00 5.34
421 422 3.670377 GGCAACCCTGTTCACGCC 61.670 66.667 0.00 0.00 0.00 5.68
422 423 2.594592 GCAACCCTGTTCACGCCT 60.595 61.111 0.00 0.00 0.00 5.52
423 424 2.617274 GCAACCCTGTTCACGCCTC 61.617 63.158 0.00 0.00 0.00 4.70
424 425 1.071471 CAACCCTGTTCACGCCTCT 59.929 57.895 0.00 0.00 0.00 3.69
425 426 0.535102 CAACCCTGTTCACGCCTCTT 60.535 55.000 0.00 0.00 0.00 2.85
426 427 0.535102 AACCCTGTTCACGCCTCTTG 60.535 55.000 0.00 0.00 0.00 3.02
427 428 2.328099 CCCTGTTCACGCCTCTTGC 61.328 63.158 0.00 0.00 0.00 4.01
436 437 2.853914 GCCTCTTGCGTTCGTGTC 59.146 61.111 0.00 0.00 0.00 3.67
437 438 1.954146 GCCTCTTGCGTTCGTGTCA 60.954 57.895 0.00 0.00 0.00 3.58
438 439 1.291877 GCCTCTTGCGTTCGTGTCAT 61.292 55.000 0.00 0.00 0.00 3.06
439 440 0.439985 CCTCTTGCGTTCGTGTCATG 59.560 55.000 0.00 0.00 0.00 3.07
440 441 0.439985 CTCTTGCGTTCGTGTCATGG 59.560 55.000 0.00 0.00 0.00 3.66
441 442 0.948623 TCTTGCGTTCGTGTCATGGG 60.949 55.000 0.00 0.00 0.00 4.00
442 443 1.227704 TTGCGTTCGTGTCATGGGT 60.228 52.632 0.00 0.00 0.00 4.51
443 444 0.816018 TTGCGTTCGTGTCATGGGTT 60.816 50.000 0.00 0.00 0.00 4.11
444 445 1.206578 GCGTTCGTGTCATGGGTTG 59.793 57.895 0.00 0.00 0.00 3.77
445 446 1.503818 GCGTTCGTGTCATGGGTTGT 61.504 55.000 0.00 0.00 0.00 3.32
446 447 1.785768 CGTTCGTGTCATGGGTTGTA 58.214 50.000 0.00 0.00 0.00 2.41
447 448 1.458064 CGTTCGTGTCATGGGTTGTAC 59.542 52.381 0.00 0.00 0.00 2.90
448 449 2.762745 GTTCGTGTCATGGGTTGTACT 58.237 47.619 0.00 0.00 0.00 2.73
449 450 3.135994 GTTCGTGTCATGGGTTGTACTT 58.864 45.455 0.00 0.00 0.00 2.24
450 451 3.034721 TCGTGTCATGGGTTGTACTTC 57.965 47.619 0.00 0.00 0.00 3.01
451 452 2.365941 TCGTGTCATGGGTTGTACTTCA 59.634 45.455 0.00 0.00 0.00 3.02
452 453 2.478894 CGTGTCATGGGTTGTACTTCAC 59.521 50.000 0.00 0.00 0.00 3.18
453 454 3.740115 GTGTCATGGGTTGTACTTCACT 58.260 45.455 0.00 0.00 0.00 3.41
454 455 3.498397 GTGTCATGGGTTGTACTTCACTG 59.502 47.826 0.00 0.00 0.00 3.66
455 456 3.135712 TGTCATGGGTTGTACTTCACTGT 59.864 43.478 0.00 0.00 0.00 3.55
456 457 4.345547 TGTCATGGGTTGTACTTCACTGTA 59.654 41.667 0.00 0.00 0.00 2.74
457 458 5.012664 TGTCATGGGTTGTACTTCACTGTAT 59.987 40.000 0.00 0.00 0.00 2.29
458 459 5.938125 GTCATGGGTTGTACTTCACTGTATT 59.062 40.000 0.00 0.00 0.00 1.89
459 460 6.092259 GTCATGGGTTGTACTTCACTGTATTC 59.908 42.308 0.00 0.00 0.00 1.75
460 461 5.554437 TGGGTTGTACTTCACTGTATTCA 57.446 39.130 0.00 0.00 0.00 2.57
461 462 6.121776 TGGGTTGTACTTCACTGTATTCAT 57.878 37.500 0.00 0.00 0.00 2.57
462 463 6.539173 TGGGTTGTACTTCACTGTATTCATT 58.461 36.000 0.00 0.00 0.00 2.57
463 464 6.653320 TGGGTTGTACTTCACTGTATTCATTC 59.347 38.462 0.00 0.00 0.00 2.67
464 465 6.879458 GGGTTGTACTTCACTGTATTCATTCT 59.121 38.462 0.00 0.00 0.00 2.40
465 466 8.038944 GGGTTGTACTTCACTGTATTCATTCTA 58.961 37.037 0.00 0.00 0.00 2.10
466 467 9.431887 GGTTGTACTTCACTGTATTCATTCTAA 57.568 33.333 0.00 0.00 0.00 2.10
498 499 5.565592 TCAATGAATGATACGCAAGCTTT 57.434 34.783 0.00 0.00 34.49 3.51
499 500 5.334319 TCAATGAATGATACGCAAGCTTTG 58.666 37.500 0.00 0.00 34.49 2.77
500 501 6.182204 TCAATGAATGATACGCAAGCTTTGC 61.182 40.000 0.00 3.35 42.51 3.68
549 551 2.125350 CAGGAGAAGAGCGGTGGC 60.125 66.667 0.00 0.00 40.37 5.01
550 552 2.604686 AGGAGAAGAGCGGTGGCA 60.605 61.111 0.00 0.00 43.41 4.92
551 553 1.992277 AGGAGAAGAGCGGTGGCAT 60.992 57.895 0.00 0.00 43.41 4.40
552 554 1.078143 GGAGAAGAGCGGTGGCATT 60.078 57.895 0.00 0.00 43.41 3.56
553 555 0.678048 GGAGAAGAGCGGTGGCATTT 60.678 55.000 0.00 0.00 43.41 2.32
554 556 0.449388 GAGAAGAGCGGTGGCATTTG 59.551 55.000 0.00 0.00 43.41 2.32
566 568 2.515071 GCATTTGGCAACCCCCACA 61.515 57.895 0.00 0.00 43.97 4.17
614 616 2.049985 GCGCGGCGAGATATCAGT 60.050 61.111 28.54 0.00 0.00 3.41
623 640 3.557595 GGCGAGATATCAGTGTTTTCCAG 59.442 47.826 5.32 0.00 0.00 3.86
629 646 6.590068 AGATATCAGTGTTTTCCAGGATCTG 58.410 40.000 5.32 0.00 0.00 2.90
699 719 4.378770 GCATTCGTGCTTGAAGAAATCAGA 60.379 41.667 0.00 0.00 39.77 3.27
757 777 1.825474 AGACAACGTGATCCTCCGAAT 59.175 47.619 0.00 0.00 0.00 3.34
923 943 3.893200 TCGGCACCCTATATATAATCCCG 59.107 47.826 9.13 9.13 0.00 5.14
933 953 6.550108 CCTATATATAATCCCGTAGCACAGGT 59.450 42.308 0.00 0.00 0.00 4.00
1033 1054 2.125912 CCACAGTCGCCTCCTTCG 60.126 66.667 0.00 0.00 0.00 3.79
1131 1152 2.344500 CGGTTCAACCAGGCCGTA 59.656 61.111 7.52 0.00 38.47 4.02
1161 1182 4.285863 CATACTCCAAGAAGGTCCTCTCT 58.714 47.826 0.00 0.00 39.02 3.10
1530 1566 2.342648 GTCACGGCGAGGTTCCTT 59.657 61.111 16.62 0.00 0.00 3.36
1684 1720 0.796927 GTTTAGAGGCTGAACGCACC 59.203 55.000 0.00 0.00 41.67 5.01
1791 1829 6.906659 ACTGAAATGATCAACAGAACATGTC 58.093 36.000 24.36 4.08 43.00 3.06
1859 1897 5.015733 CGAAATCGACTTTGAGTTACATGC 58.984 41.667 0.00 0.00 43.02 4.06
1867 1905 7.335171 TCGACTTTGAGTTACATGCTACTAGTA 59.665 37.037 1.89 1.89 0.00 1.82
1868 1906 7.640630 CGACTTTGAGTTACATGCTACTAGTAG 59.359 40.741 23.25 23.25 36.29 2.57
1869 1907 8.350852 ACTTTGAGTTACATGCTACTAGTAGT 57.649 34.615 26.76 13.33 35.65 2.73
2114 2184 3.499918 CCACAAACTGGATCAACTCTGAC 59.500 47.826 0.00 0.00 43.95 3.51
2184 2254 7.371159 GCAGCTAGTTTTGAAATAGAAAACCT 58.629 34.615 0.00 0.00 42.03 3.50
2219 2289 6.238981 GGTTTTGTTGAATGCATCCCATTTTT 60.239 34.615 0.00 0.00 44.02 1.94
2293 2365 6.601741 TCTTTGATTTGCAATTGGTGTTTC 57.398 33.333 7.72 0.00 36.15 2.78
2301 2373 5.211174 TGCAATTGGTGTTTCATTGATGA 57.789 34.783 7.72 0.00 34.44 2.92
2345 2417 1.668628 GGCGATGGATTTGTTTTGCGT 60.669 47.619 0.00 0.00 0.00 5.24
2350 2422 0.594110 GGATTTGTTTTGCGTCGGGA 59.406 50.000 0.00 0.00 0.00 5.14
2433 2505 0.909133 TGATGCACTCACTGGGCCTA 60.909 55.000 4.53 0.00 46.54 3.93
2463 2535 1.081641 GACGACAGACGAGCGGAAA 60.082 57.895 0.00 0.00 45.77 3.13
2468 2540 0.597637 ACAGACGAGCGGAAACAGTG 60.598 55.000 0.00 0.00 0.00 3.66
2509 2581 3.541632 GCGGTCCCAATTAAGATTCTCA 58.458 45.455 0.00 0.00 0.00 3.27
2532 2604 1.227943 GGCAATGGCAGAGGCGATA 60.228 57.895 0.58 0.00 43.71 2.92
2544 2616 3.438781 CAGAGGCGATAGAGTCTCCATAC 59.561 52.174 0.00 0.00 33.98 2.39
2553 2625 1.741706 GAGTCTCCATACCGTCGACAA 59.258 52.381 17.16 0.01 0.00 3.18
2636 2709 3.363575 CCGGTGAATTTGCGTATTATCCG 60.364 47.826 0.00 13.66 35.52 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.685276 TTTGATTCACAGGATAAGAACACATAT 57.315 29.630 0.00 0.00 0.00 1.78
28 29 9.685276 ATTTGATTCACAGGATAAGAACACATA 57.315 29.630 0.00 0.00 0.00 2.29
29 30 8.464404 CATTTGATTCACAGGATAAGAACACAT 58.536 33.333 0.00 0.00 0.00 3.21
30 31 7.665145 TCATTTGATTCACAGGATAAGAACACA 59.335 33.333 0.00 0.00 0.00 3.72
31 32 8.044060 TCATTTGATTCACAGGATAAGAACAC 57.956 34.615 0.00 0.00 0.00 3.32
32 33 8.812513 ATCATTTGATTCACAGGATAAGAACA 57.187 30.769 0.00 0.00 0.00 3.18
60 61 9.561069 GCTCAGACCATAGGAATAGAAAATAAA 57.439 33.333 0.00 0.00 0.00 1.40
61 62 8.713971 TGCTCAGACCATAGGAATAGAAAATAA 58.286 33.333 0.00 0.00 0.00 1.40
62 63 8.150945 GTGCTCAGACCATAGGAATAGAAAATA 58.849 37.037 0.00 0.00 0.00 1.40
63 64 6.995091 GTGCTCAGACCATAGGAATAGAAAAT 59.005 38.462 0.00 0.00 0.00 1.82
64 65 6.156949 AGTGCTCAGACCATAGGAATAGAAAA 59.843 38.462 0.00 0.00 0.00 2.29
65 66 5.663106 AGTGCTCAGACCATAGGAATAGAAA 59.337 40.000 0.00 0.00 0.00 2.52
66 67 5.211973 AGTGCTCAGACCATAGGAATAGAA 58.788 41.667 0.00 0.00 0.00 2.10
67 68 4.809193 AGTGCTCAGACCATAGGAATAGA 58.191 43.478 0.00 0.00 0.00 1.98
68 69 5.543507 AAGTGCTCAGACCATAGGAATAG 57.456 43.478 0.00 0.00 0.00 1.73
69 70 8.721133 TTATAAGTGCTCAGACCATAGGAATA 57.279 34.615 0.00 0.00 0.00 1.75
70 71 7.510685 TCTTATAAGTGCTCAGACCATAGGAAT 59.489 37.037 12.19 0.00 0.00 3.01
71 72 6.839134 TCTTATAAGTGCTCAGACCATAGGAA 59.161 38.462 12.19 0.00 0.00 3.36
72 73 6.373759 TCTTATAAGTGCTCAGACCATAGGA 58.626 40.000 12.19 0.00 0.00 2.94
73 74 6.656632 TCTTATAAGTGCTCAGACCATAGG 57.343 41.667 12.19 0.00 0.00 2.57
74 75 8.363390 TGAATCTTATAAGTGCTCAGACCATAG 58.637 37.037 12.19 0.00 0.00 2.23
75 76 8.250143 TGAATCTTATAAGTGCTCAGACCATA 57.750 34.615 12.19 0.00 0.00 2.74
76 77 7.129457 TGAATCTTATAAGTGCTCAGACCAT 57.871 36.000 12.19 0.00 0.00 3.55
77 78 6.544928 TGAATCTTATAAGTGCTCAGACCA 57.455 37.500 12.19 0.00 0.00 4.02
78 79 7.268586 TCTTGAATCTTATAAGTGCTCAGACC 58.731 38.462 12.19 0.00 0.00 3.85
79 80 8.885494 ATCTTGAATCTTATAAGTGCTCAGAC 57.115 34.615 12.19 0.00 0.00 3.51
80 81 9.973450 GTATCTTGAATCTTATAAGTGCTCAGA 57.027 33.333 12.19 9.74 0.00 3.27
81 82 9.755804 TGTATCTTGAATCTTATAAGTGCTCAG 57.244 33.333 12.19 5.22 0.00 3.35
136 137 8.786898 GGTTCATAGCATAAGAATTGCATAAGA 58.213 33.333 0.00 0.00 42.62 2.10
137 138 8.570488 TGGTTCATAGCATAAGAATTGCATAAG 58.430 33.333 0.00 0.00 42.62 1.73
138 139 8.462589 TGGTTCATAGCATAAGAATTGCATAA 57.537 30.769 0.00 0.00 42.62 1.90
139 140 8.462589 TTGGTTCATAGCATAAGAATTGCATA 57.537 30.769 0.00 0.00 42.62 3.14
140 141 6.964807 TGGTTCATAGCATAAGAATTGCAT 57.035 33.333 0.00 0.00 42.62 3.96
141 142 6.772360 TTGGTTCATAGCATAAGAATTGCA 57.228 33.333 0.00 0.00 42.62 4.08
142 143 7.483307 TCTTTGGTTCATAGCATAAGAATTGC 58.517 34.615 0.00 0.00 40.45 3.56
145 146 9.007901 GCTATCTTTGGTTCATAGCATAAGAAT 57.992 33.333 5.48 0.00 43.08 2.40
146 147 7.445402 GGCTATCTTTGGTTCATAGCATAAGAA 59.555 37.037 11.27 0.00 44.66 2.52
147 148 6.936900 GGCTATCTTTGGTTCATAGCATAAGA 59.063 38.462 11.27 0.00 44.66 2.10
148 149 6.939163 AGGCTATCTTTGGTTCATAGCATAAG 59.061 38.462 11.27 0.00 44.66 1.73
149 150 6.841601 AGGCTATCTTTGGTTCATAGCATAA 58.158 36.000 11.27 0.00 44.66 1.90
150 151 6.439636 AGGCTATCTTTGGTTCATAGCATA 57.560 37.500 11.27 0.00 44.66 3.14
151 152 5.316158 AGGCTATCTTTGGTTCATAGCAT 57.684 39.130 11.27 2.56 44.66 3.79
152 153 4.778213 AGGCTATCTTTGGTTCATAGCA 57.222 40.909 11.27 0.00 44.66 3.49
153 154 6.292150 ACTTAGGCTATCTTTGGTTCATAGC 58.708 40.000 0.00 2.16 42.92 2.97
154 155 7.227512 CCAACTTAGGCTATCTTTGGTTCATAG 59.772 40.741 15.97 1.72 30.15 2.23
155 156 7.054124 CCAACTTAGGCTATCTTTGGTTCATA 58.946 38.462 15.97 0.00 30.15 2.15
156 157 5.888161 CCAACTTAGGCTATCTTTGGTTCAT 59.112 40.000 15.97 0.00 30.15 2.57
157 158 5.253330 CCAACTTAGGCTATCTTTGGTTCA 58.747 41.667 15.97 0.00 30.15 3.18
158 159 4.640647 CCCAACTTAGGCTATCTTTGGTTC 59.359 45.833 19.83 0.00 31.89 3.62
159 160 4.291249 TCCCAACTTAGGCTATCTTTGGTT 59.709 41.667 19.83 7.60 31.89 3.67
160 161 3.850173 TCCCAACTTAGGCTATCTTTGGT 59.150 43.478 19.83 3.23 31.89 3.67
161 162 4.503714 TCCCAACTTAGGCTATCTTTGG 57.496 45.455 16.76 16.76 33.01 3.28
162 163 6.712547 CCTTATCCCAACTTAGGCTATCTTTG 59.287 42.308 0.00 0.00 0.00 2.77
163 164 6.619852 TCCTTATCCCAACTTAGGCTATCTTT 59.380 38.462 0.00 0.00 0.00 2.52
164 165 6.151049 TCCTTATCCCAACTTAGGCTATCTT 58.849 40.000 0.00 0.00 0.00 2.40
165 166 5.727630 TCCTTATCCCAACTTAGGCTATCT 58.272 41.667 0.00 0.00 0.00 1.98
166 167 6.628398 CGATCCTTATCCCAACTTAGGCTATC 60.628 46.154 0.00 0.00 0.00 2.08
167 168 5.187967 CGATCCTTATCCCAACTTAGGCTAT 59.812 44.000 0.00 0.00 0.00 2.97
168 169 4.527038 CGATCCTTATCCCAACTTAGGCTA 59.473 45.833 0.00 0.00 0.00 3.93
169 170 3.325135 CGATCCTTATCCCAACTTAGGCT 59.675 47.826 0.00 0.00 0.00 4.58
170 171 3.557264 CCGATCCTTATCCCAACTTAGGC 60.557 52.174 0.00 0.00 0.00 3.93
171 172 3.901844 TCCGATCCTTATCCCAACTTAGG 59.098 47.826 0.00 0.00 0.00 2.69
172 173 4.558898 CGTCCGATCCTTATCCCAACTTAG 60.559 50.000 0.00 0.00 0.00 2.18
173 174 3.319972 CGTCCGATCCTTATCCCAACTTA 59.680 47.826 0.00 0.00 0.00 2.24
174 175 2.102588 CGTCCGATCCTTATCCCAACTT 59.897 50.000 0.00 0.00 0.00 2.66
175 176 1.687123 CGTCCGATCCTTATCCCAACT 59.313 52.381 0.00 0.00 0.00 3.16
176 177 1.684983 TCGTCCGATCCTTATCCCAAC 59.315 52.381 0.00 0.00 0.00 3.77
177 178 1.684983 GTCGTCCGATCCTTATCCCAA 59.315 52.381 0.00 0.00 0.00 4.12
178 179 1.325355 GTCGTCCGATCCTTATCCCA 58.675 55.000 0.00 0.00 0.00 4.37
179 180 0.602060 GGTCGTCCGATCCTTATCCC 59.398 60.000 0.00 0.00 0.00 3.85
180 181 0.602060 GGGTCGTCCGATCCTTATCC 59.398 60.000 11.67 0.00 42.00 2.59
186 187 1.152798 ACCTAGGGTCGTCCGATCC 60.153 63.158 14.81 11.00 45.49 3.36
187 188 2.329244 GACCTAGGGTCGTCCGATC 58.671 63.158 14.81 0.00 43.14 3.69
188 189 4.575180 GACCTAGGGTCGTCCGAT 57.425 61.111 14.81 0.00 43.14 4.18
196 197 0.322648 CGAAAAACCGGACCTAGGGT 59.677 55.000 14.81 0.00 39.44 4.34
197 198 3.148340 CGAAAAACCGGACCTAGGG 57.852 57.895 14.81 0.00 0.00 3.53
206 207 0.733566 TCGTCCGATCCGAAAAACCG 60.734 55.000 0.00 0.00 0.00 4.44
207 208 0.717784 GTCGTCCGATCCGAAAAACC 59.282 55.000 0.00 0.00 35.89 3.27
208 209 0.364515 CGTCGTCCGATCCGAAAAAC 59.635 55.000 0.00 0.00 39.56 2.43
209 210 0.240678 TCGTCGTCCGATCCGAAAAA 59.759 50.000 0.72 0.00 41.60 1.94
210 211 1.875262 TCGTCGTCCGATCCGAAAA 59.125 52.632 0.72 0.00 41.60 2.29
211 212 3.577229 TCGTCGTCCGATCCGAAA 58.423 55.556 0.72 0.00 41.60 3.46
226 227 0.179171 ATGACACTAAGACGCCGTCG 60.179 55.000 12.13 0.00 37.67 5.12
227 228 1.992170 AATGACACTAAGACGCCGTC 58.008 50.000 9.71 9.71 0.00 4.79
228 229 2.450609 AAATGACACTAAGACGCCGT 57.549 45.000 0.00 0.00 0.00 5.68
229 230 3.806316 AAAAATGACACTAAGACGCCG 57.194 42.857 0.00 0.00 0.00 6.46
248 249 2.011222 AGACAACGCCTTCACGAAAAA 58.989 42.857 0.00 0.00 36.70 1.94
249 250 1.658994 AGACAACGCCTTCACGAAAA 58.341 45.000 0.00 0.00 36.70 2.29
250 251 1.329292 CAAGACAACGCCTTCACGAAA 59.671 47.619 0.00 0.00 36.70 3.46
251 252 0.934496 CAAGACAACGCCTTCACGAA 59.066 50.000 0.00 0.00 36.70 3.85
252 253 0.179094 ACAAGACAACGCCTTCACGA 60.179 50.000 0.00 0.00 36.70 4.35
253 254 0.655733 AACAAGACAACGCCTTCACG 59.344 50.000 0.00 0.00 39.50 4.35
254 255 2.450160 CAAACAAGACAACGCCTTCAC 58.550 47.619 0.00 0.00 0.00 3.18
255 256 1.202245 GCAAACAAGACAACGCCTTCA 60.202 47.619 0.00 0.00 0.00 3.02
256 257 1.065551 AGCAAACAAGACAACGCCTTC 59.934 47.619 0.00 0.00 0.00 3.46
257 258 1.065551 GAGCAAACAAGACAACGCCTT 59.934 47.619 0.00 0.00 0.00 4.35
258 259 0.663153 GAGCAAACAAGACAACGCCT 59.337 50.000 0.00 0.00 0.00 5.52
259 260 0.657368 CGAGCAAACAAGACAACGCC 60.657 55.000 0.00 0.00 0.00 5.68
260 261 1.262166 GCGAGCAAACAAGACAACGC 61.262 55.000 0.00 0.00 38.23 4.84
261 262 0.986874 CGCGAGCAAACAAGACAACG 60.987 55.000 0.00 0.00 0.00 4.10
262 263 0.657368 CCGCGAGCAAACAAGACAAC 60.657 55.000 8.23 0.00 0.00 3.32
263 264 1.092921 ACCGCGAGCAAACAAGACAA 61.093 50.000 8.23 0.00 0.00 3.18
264 265 1.522806 ACCGCGAGCAAACAAGACA 60.523 52.632 8.23 0.00 0.00 3.41
265 266 1.082756 CACCGCGAGCAAACAAGAC 60.083 57.895 8.23 0.00 0.00 3.01
266 267 1.495584 GACACCGCGAGCAAACAAGA 61.496 55.000 8.23 0.00 0.00 3.02
267 268 1.082756 GACACCGCGAGCAAACAAG 60.083 57.895 8.23 0.00 0.00 3.16
268 269 2.539338 GGACACCGCGAGCAAACAA 61.539 57.895 8.23 0.00 0.00 2.83
269 270 2.970324 GGACACCGCGAGCAAACA 60.970 61.111 8.23 0.00 0.00 2.83
270 271 2.665185 AGGACACCGCGAGCAAAC 60.665 61.111 8.23 0.00 0.00 2.93
271 272 2.357034 GAGGACACCGCGAGCAAA 60.357 61.111 8.23 0.00 0.00 3.68
278 279 3.701604 CTAGCACCGAGGACACCGC 62.702 68.421 0.00 0.00 0.00 5.68
279 280 1.384989 ATCTAGCACCGAGGACACCG 61.385 60.000 0.00 0.00 0.00 4.94
280 281 0.103208 CATCTAGCACCGAGGACACC 59.897 60.000 0.00 0.00 0.00 4.16
281 282 0.818296 ACATCTAGCACCGAGGACAC 59.182 55.000 0.00 0.00 0.00 3.67
282 283 0.817654 CACATCTAGCACCGAGGACA 59.182 55.000 0.00 0.00 0.00 4.02
283 284 1.103803 TCACATCTAGCACCGAGGAC 58.896 55.000 0.00 0.00 0.00 3.85
284 285 1.751351 CTTCACATCTAGCACCGAGGA 59.249 52.381 0.00 0.00 0.00 3.71
285 286 1.751351 TCTTCACATCTAGCACCGAGG 59.249 52.381 0.00 0.00 0.00 4.63
286 287 3.181482 ACATCTTCACATCTAGCACCGAG 60.181 47.826 0.00 0.00 0.00 4.63
287 288 2.760650 ACATCTTCACATCTAGCACCGA 59.239 45.455 0.00 0.00 0.00 4.69
288 289 3.170791 ACATCTTCACATCTAGCACCG 57.829 47.619 0.00 0.00 0.00 4.94
289 290 3.624861 CCAACATCTTCACATCTAGCACC 59.375 47.826 0.00 0.00 0.00 5.01
290 291 4.256920 ACCAACATCTTCACATCTAGCAC 58.743 43.478 0.00 0.00 0.00 4.40
291 292 4.507710 GACCAACATCTTCACATCTAGCA 58.492 43.478 0.00 0.00 0.00 3.49
292 293 3.553511 CGACCAACATCTTCACATCTAGC 59.446 47.826 0.00 0.00 0.00 3.42
293 294 4.748892 ACGACCAACATCTTCACATCTAG 58.251 43.478 0.00 0.00 0.00 2.43
294 295 4.462834 AGACGACCAACATCTTCACATCTA 59.537 41.667 0.00 0.00 0.00 1.98
295 296 3.259374 AGACGACCAACATCTTCACATCT 59.741 43.478 0.00 0.00 0.00 2.90
296 297 3.589988 AGACGACCAACATCTTCACATC 58.410 45.455 0.00 0.00 0.00 3.06
297 298 3.685139 AGACGACCAACATCTTCACAT 57.315 42.857 0.00 0.00 0.00 3.21
298 299 3.572682 ACTAGACGACCAACATCTTCACA 59.427 43.478 0.00 0.00 0.00 3.58
299 300 4.175787 ACTAGACGACCAACATCTTCAC 57.824 45.455 0.00 0.00 0.00 3.18
300 301 4.038763 ACAACTAGACGACCAACATCTTCA 59.961 41.667 0.00 0.00 0.00 3.02
301 302 4.557205 ACAACTAGACGACCAACATCTTC 58.443 43.478 0.00 0.00 0.00 2.87
302 303 4.602340 ACAACTAGACGACCAACATCTT 57.398 40.909 0.00 0.00 0.00 2.40
303 304 4.307432 CAACAACTAGACGACCAACATCT 58.693 43.478 0.00 0.00 0.00 2.90
304 305 3.120649 GCAACAACTAGACGACCAACATC 60.121 47.826 0.00 0.00 0.00 3.06
305 306 2.806244 GCAACAACTAGACGACCAACAT 59.194 45.455 0.00 0.00 0.00 2.71
306 307 2.159014 AGCAACAACTAGACGACCAACA 60.159 45.455 0.00 0.00 0.00 3.33
307 308 2.480845 AGCAACAACTAGACGACCAAC 58.519 47.619 0.00 0.00 0.00 3.77
308 309 2.869801 CAAGCAACAACTAGACGACCAA 59.130 45.455 0.00 0.00 0.00 3.67
309 310 2.479837 CAAGCAACAACTAGACGACCA 58.520 47.619 0.00 0.00 0.00 4.02
310 311 1.798813 CCAAGCAACAACTAGACGACC 59.201 52.381 0.00 0.00 0.00 4.79
311 312 1.798813 CCCAAGCAACAACTAGACGAC 59.201 52.381 0.00 0.00 0.00 4.34
312 313 1.414919 ACCCAAGCAACAACTAGACGA 59.585 47.619 0.00 0.00 0.00 4.20
313 314 1.878953 ACCCAAGCAACAACTAGACG 58.121 50.000 0.00 0.00 0.00 4.18
314 315 2.287608 GCAACCCAAGCAACAACTAGAC 60.288 50.000 0.00 0.00 0.00 2.59
315 316 1.953686 GCAACCCAAGCAACAACTAGA 59.046 47.619 0.00 0.00 0.00 2.43
316 317 1.956477 AGCAACCCAAGCAACAACTAG 59.044 47.619 0.00 0.00 0.00 2.57
317 318 2.065899 AGCAACCCAAGCAACAACTA 57.934 45.000 0.00 0.00 0.00 2.24
318 319 1.136891 GAAGCAACCCAAGCAACAACT 59.863 47.619 0.00 0.00 0.00 3.16
319 320 1.570813 GAAGCAACCCAAGCAACAAC 58.429 50.000 0.00 0.00 0.00 3.32
320 321 0.463620 GGAAGCAACCCAAGCAACAA 59.536 50.000 0.00 0.00 0.00 2.83
321 322 2.123409 GGAAGCAACCCAAGCAACA 58.877 52.632 0.00 0.00 0.00 3.33
330 331 2.574018 GCCAACCTGGGAAGCAACC 61.574 63.158 0.00 0.00 38.19 3.77
331 332 2.919494 CGCCAACCTGGGAAGCAAC 61.919 63.158 0.00 0.00 38.19 4.17
332 333 2.597217 CGCCAACCTGGGAAGCAA 60.597 61.111 0.00 0.00 38.19 3.91
333 334 3.551496 CTCGCCAACCTGGGAAGCA 62.551 63.158 0.00 0.00 38.19 3.91
334 335 2.747855 CTCGCCAACCTGGGAAGC 60.748 66.667 0.00 0.00 38.19 3.86
335 336 0.537371 AAACTCGCCAACCTGGGAAG 60.537 55.000 0.00 0.00 38.19 3.46
336 337 0.766131 TAAACTCGCCAACCTGGGAA 59.234 50.000 0.00 0.00 38.19 3.97
337 338 0.323629 CTAAACTCGCCAACCTGGGA 59.676 55.000 0.00 0.00 38.19 4.37
338 339 1.305930 GCTAAACTCGCCAACCTGGG 61.306 60.000 0.00 0.00 38.19 4.45
339 340 0.321653 AGCTAAACTCGCCAACCTGG 60.322 55.000 0.00 0.00 41.55 4.45
340 341 0.798776 CAGCTAAACTCGCCAACCTG 59.201 55.000 0.00 0.00 0.00 4.00
341 342 0.396811 ACAGCTAAACTCGCCAACCT 59.603 50.000 0.00 0.00 0.00 3.50
342 343 0.517316 CACAGCTAAACTCGCCAACC 59.483 55.000 0.00 0.00 0.00 3.77
343 344 1.226746 ACACAGCTAAACTCGCCAAC 58.773 50.000 0.00 0.00 0.00 3.77
344 345 1.961793 AACACAGCTAAACTCGCCAA 58.038 45.000 0.00 0.00 0.00 4.52
345 346 1.961793 AAACACAGCTAAACTCGCCA 58.038 45.000 0.00 0.00 0.00 5.69
346 347 3.003378 AGAAAAACACAGCTAAACTCGCC 59.997 43.478 0.00 0.00 0.00 5.54
347 348 4.210832 AGAAAAACACAGCTAAACTCGC 57.789 40.909 0.00 0.00 0.00 5.03
348 349 6.027749 ACAAAGAAAAACACAGCTAAACTCG 58.972 36.000 0.00 0.00 0.00 4.18
349 350 7.812309 AACAAAGAAAAACACAGCTAAACTC 57.188 32.000 0.00 0.00 0.00 3.01
350 351 7.117667 CCAAACAAAGAAAAACACAGCTAAACT 59.882 33.333 0.00 0.00 0.00 2.66
351 352 7.233689 CCAAACAAAGAAAAACACAGCTAAAC 58.766 34.615 0.00 0.00 0.00 2.01
352 353 6.370166 CCCAAACAAAGAAAAACACAGCTAAA 59.630 34.615 0.00 0.00 0.00 1.85
353 354 5.872070 CCCAAACAAAGAAAAACACAGCTAA 59.128 36.000 0.00 0.00 0.00 3.09
354 355 5.046950 ACCCAAACAAAGAAAAACACAGCTA 60.047 36.000 0.00 0.00 0.00 3.32
355 356 4.252878 CCCAAACAAAGAAAAACACAGCT 58.747 39.130 0.00 0.00 0.00 4.24
356 357 4.000325 ACCCAAACAAAGAAAAACACAGC 59.000 39.130 0.00 0.00 0.00 4.40
357 358 4.326009 CGACCCAAACAAAGAAAAACACAG 59.674 41.667 0.00 0.00 0.00 3.66
358 359 4.022242 TCGACCCAAACAAAGAAAAACACA 60.022 37.500 0.00 0.00 0.00 3.72
359 360 4.487019 TCGACCCAAACAAAGAAAAACAC 58.513 39.130 0.00 0.00 0.00 3.32
360 361 4.739195 CTCGACCCAAACAAAGAAAAACA 58.261 39.130 0.00 0.00 0.00 2.83
361 362 3.550275 GCTCGACCCAAACAAAGAAAAAC 59.450 43.478 0.00 0.00 0.00 2.43
362 363 3.445805 AGCTCGACCCAAACAAAGAAAAA 59.554 39.130 0.00 0.00 0.00 1.94
363 364 3.020984 AGCTCGACCCAAACAAAGAAAA 58.979 40.909 0.00 0.00 0.00 2.29
364 365 2.650322 AGCTCGACCCAAACAAAGAAA 58.350 42.857 0.00 0.00 0.00 2.52
365 366 2.341846 AGCTCGACCCAAACAAAGAA 57.658 45.000 0.00 0.00 0.00 2.52
366 367 2.158813 AGAAGCTCGACCCAAACAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
367 368 2.222027 AGAAGCTCGACCCAAACAAAG 58.778 47.619 0.00 0.00 0.00 2.77
368 369 2.218603 GAGAAGCTCGACCCAAACAAA 58.781 47.619 0.00 0.00 0.00 2.83
369 370 1.140052 TGAGAAGCTCGACCCAAACAA 59.860 47.619 0.00 0.00 32.35 2.83
370 371 0.756294 TGAGAAGCTCGACCCAAACA 59.244 50.000 0.00 0.00 32.35 2.83
371 372 1.734465 CATGAGAAGCTCGACCCAAAC 59.266 52.381 0.00 0.00 32.35 2.93
372 373 1.347707 ACATGAGAAGCTCGACCCAAA 59.652 47.619 0.00 0.00 32.35 3.28
373 374 0.976641 ACATGAGAAGCTCGACCCAA 59.023 50.000 0.00 0.00 32.35 4.12
374 375 0.532573 GACATGAGAAGCTCGACCCA 59.467 55.000 0.00 0.00 32.35 4.51
375 376 0.820871 AGACATGAGAAGCTCGACCC 59.179 55.000 0.00 0.00 32.35 4.46
376 377 1.748493 AGAGACATGAGAAGCTCGACC 59.252 52.381 0.00 0.00 32.35 4.79
377 378 3.502191 AAGAGACATGAGAAGCTCGAC 57.498 47.619 0.00 0.00 32.35 4.20
378 379 3.256879 ACAAAGAGACATGAGAAGCTCGA 59.743 43.478 0.00 0.00 32.35 4.04
379 380 3.583806 ACAAAGAGACATGAGAAGCTCG 58.416 45.455 0.00 0.00 32.35 5.03
380 381 5.389307 CGAAACAAAGAGACATGAGAAGCTC 60.389 44.000 0.00 0.00 0.00 4.09
381 382 4.450419 CGAAACAAAGAGACATGAGAAGCT 59.550 41.667 0.00 0.00 0.00 3.74
382 383 4.377841 CCGAAACAAAGAGACATGAGAAGC 60.378 45.833 0.00 0.00 0.00 3.86
383 384 4.377841 GCCGAAACAAAGAGACATGAGAAG 60.378 45.833 0.00 0.00 0.00 2.85
384 385 3.498397 GCCGAAACAAAGAGACATGAGAA 59.502 43.478 0.00 0.00 0.00 2.87
385 386 3.067106 GCCGAAACAAAGAGACATGAGA 58.933 45.455 0.00 0.00 0.00 3.27
386 387 2.807967 TGCCGAAACAAAGAGACATGAG 59.192 45.455 0.00 0.00 0.00 2.90
387 388 2.844946 TGCCGAAACAAAGAGACATGA 58.155 42.857 0.00 0.00 0.00 3.07
388 389 3.300009 GTTGCCGAAACAAAGAGACATG 58.700 45.455 0.00 0.00 38.75 3.21
389 390 2.293399 GGTTGCCGAAACAAAGAGACAT 59.707 45.455 3.80 0.00 40.86 3.06
390 391 1.673920 GGTTGCCGAAACAAAGAGACA 59.326 47.619 3.80 0.00 40.86 3.41
391 392 1.001706 GGGTTGCCGAAACAAAGAGAC 60.002 52.381 3.80 0.00 40.86 3.36
392 393 1.133915 AGGGTTGCCGAAACAAAGAGA 60.134 47.619 3.80 0.00 40.86 3.10
393 394 1.001378 CAGGGTTGCCGAAACAAAGAG 60.001 52.381 3.80 0.00 40.86 2.85
394 395 1.028905 CAGGGTTGCCGAAACAAAGA 58.971 50.000 3.80 0.00 40.86 2.52
395 396 0.744281 ACAGGGTTGCCGAAACAAAG 59.256 50.000 3.80 0.00 40.86 2.77
396 397 1.135333 GAACAGGGTTGCCGAAACAAA 59.865 47.619 3.80 0.00 40.86 2.83
397 398 0.741915 GAACAGGGTTGCCGAAACAA 59.258 50.000 3.80 0.00 40.86 2.83
398 399 0.394488 TGAACAGGGTTGCCGAAACA 60.394 50.000 3.80 0.00 40.86 2.83
399 400 0.030235 GTGAACAGGGTTGCCGAAAC 59.970 55.000 0.00 0.00 38.12 2.78
400 401 1.440938 CGTGAACAGGGTTGCCGAAA 61.441 55.000 0.00 0.00 0.00 3.46
401 402 1.890041 CGTGAACAGGGTTGCCGAA 60.890 57.895 0.00 0.00 0.00 4.30
402 403 2.280524 CGTGAACAGGGTTGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
403 404 4.025401 GCGTGAACAGGGTTGCCG 62.025 66.667 0.00 0.00 0.00 5.69
404 405 3.670377 GGCGTGAACAGGGTTGCC 61.670 66.667 0.00 0.00 35.04 4.52
405 406 2.594592 AGGCGTGAACAGGGTTGC 60.595 61.111 0.00 0.00 0.00 4.17
406 407 0.535102 AAGAGGCGTGAACAGGGTTG 60.535 55.000 0.00 0.00 0.00 3.77
407 408 0.535102 CAAGAGGCGTGAACAGGGTT 60.535 55.000 0.00 0.00 0.00 4.11
408 409 1.071471 CAAGAGGCGTGAACAGGGT 59.929 57.895 0.00 0.00 0.00 4.34
409 410 2.328099 GCAAGAGGCGTGAACAGGG 61.328 63.158 0.00 0.00 0.00 4.45
410 411 3.257933 GCAAGAGGCGTGAACAGG 58.742 61.111 0.00 0.00 0.00 4.00
419 420 1.291877 ATGACACGAACGCAAGAGGC 61.292 55.000 0.00 0.00 43.62 4.70
420 421 0.439985 CATGACACGAACGCAAGAGG 59.560 55.000 0.00 0.00 43.62 3.69
421 422 0.439985 CCATGACACGAACGCAAGAG 59.560 55.000 0.00 0.00 43.62 2.85
422 423 0.948623 CCCATGACACGAACGCAAGA 60.949 55.000 0.00 0.00 43.62 3.02
424 425 0.816018 AACCCATGACACGAACGCAA 60.816 50.000 0.00 0.00 0.00 4.85
425 426 1.227704 AACCCATGACACGAACGCA 60.228 52.632 0.00 0.00 0.00 5.24
426 427 1.206578 CAACCCATGACACGAACGC 59.793 57.895 0.00 0.00 0.00 4.84
427 428 1.458064 GTACAACCCATGACACGAACG 59.542 52.381 0.00 0.00 0.00 3.95
428 429 2.762745 AGTACAACCCATGACACGAAC 58.237 47.619 0.00 0.00 0.00 3.95
429 430 3.181464 TGAAGTACAACCCATGACACGAA 60.181 43.478 0.00 0.00 0.00 3.85
430 431 2.365941 TGAAGTACAACCCATGACACGA 59.634 45.455 0.00 0.00 0.00 4.35
431 432 2.478894 GTGAAGTACAACCCATGACACG 59.521 50.000 0.00 0.00 0.00 4.49
432 433 3.498397 CAGTGAAGTACAACCCATGACAC 59.502 47.826 0.00 0.00 0.00 3.67
433 434 3.135712 ACAGTGAAGTACAACCCATGACA 59.864 43.478 0.00 0.00 0.00 3.58
434 435 3.740115 ACAGTGAAGTACAACCCATGAC 58.260 45.455 0.00 0.00 0.00 3.06
435 436 5.755409 ATACAGTGAAGTACAACCCATGA 57.245 39.130 0.00 0.00 0.00 3.07
436 437 5.937540 TGAATACAGTGAAGTACAACCCATG 59.062 40.000 0.00 0.00 0.00 3.66
437 438 6.121776 TGAATACAGTGAAGTACAACCCAT 57.878 37.500 0.00 0.00 0.00 4.00
438 439 5.554437 TGAATACAGTGAAGTACAACCCA 57.446 39.130 0.00 0.00 0.00 4.51
439 440 6.879458 AGAATGAATACAGTGAAGTACAACCC 59.121 38.462 0.00 0.00 0.00 4.11
440 441 7.907214 AGAATGAATACAGTGAAGTACAACC 57.093 36.000 0.00 0.00 0.00 3.77
465 466 8.768955 GCGTATCATTCATTGATAGAAGAAGTT 58.231 33.333 0.00 0.00 45.74 2.66
466 467 7.928167 TGCGTATCATTCATTGATAGAAGAAGT 59.072 33.333 0.00 0.00 45.74 3.01
467 468 8.302965 TGCGTATCATTCATTGATAGAAGAAG 57.697 34.615 0.00 0.00 45.74 2.85
468 469 8.661352 TTGCGTATCATTCATTGATAGAAGAA 57.339 30.769 0.00 0.00 45.74 2.52
469 470 7.095481 GCTTGCGTATCATTCATTGATAGAAGA 60.095 37.037 10.34 0.00 45.74 2.87
470 471 7.014115 GCTTGCGTATCATTCATTGATAGAAG 58.986 38.462 0.00 1.83 45.74 2.85
471 472 6.707608 AGCTTGCGTATCATTCATTGATAGAA 59.292 34.615 0.00 0.00 45.74 2.10
472 473 6.226052 AGCTTGCGTATCATTCATTGATAGA 58.774 36.000 0.00 0.00 45.74 1.98
473 474 6.477669 AGCTTGCGTATCATTCATTGATAG 57.522 37.500 0.00 0.00 45.74 2.08
474 475 6.866010 AAGCTTGCGTATCATTCATTGATA 57.134 33.333 0.00 0.00 43.43 2.15
475 476 5.762825 AAGCTTGCGTATCATTCATTGAT 57.237 34.783 0.00 0.00 46.86 2.57
476 477 5.334319 CAAAGCTTGCGTATCATTCATTGA 58.666 37.500 0.00 0.00 39.12 2.57
477 478 5.615495 CAAAGCTTGCGTATCATTCATTG 57.385 39.130 0.00 0.00 0.00 2.82
512 513 4.528206 CCTGCCTTATCCCAACTTCTTTTT 59.472 41.667 0.00 0.00 0.00 1.94
513 514 4.089361 CCTGCCTTATCCCAACTTCTTTT 58.911 43.478 0.00 0.00 0.00 2.27
514 515 3.333680 TCCTGCCTTATCCCAACTTCTTT 59.666 43.478 0.00 0.00 0.00 2.52
515 516 2.919602 TCCTGCCTTATCCCAACTTCTT 59.080 45.455 0.00 0.00 0.00 2.52
516 517 2.507471 CTCCTGCCTTATCCCAACTTCT 59.493 50.000 0.00 0.00 0.00 2.85
517 518 2.505819 TCTCCTGCCTTATCCCAACTTC 59.494 50.000 0.00 0.00 0.00 3.01
523 524 1.071542 GCTCTTCTCCTGCCTTATCCC 59.928 57.143 0.00 0.00 0.00 3.85
549 551 1.672898 CTGTGGGGGTTGCCAAATG 59.327 57.895 0.00 0.00 0.00 2.32
550 552 1.536174 CCTGTGGGGGTTGCCAAAT 60.536 57.895 0.00 0.00 0.00 2.32
551 553 2.123077 CCTGTGGGGGTTGCCAAA 60.123 61.111 0.00 0.00 0.00 3.28
552 554 3.434179 ACCTGTGGGGGTTGCCAA 61.434 61.111 0.00 0.00 40.03 4.52
553 555 4.217210 CACCTGTGGGGGTTGCCA 62.217 66.667 0.00 0.00 37.52 4.92
566 568 4.522689 TGCGTGACACGTGCACCT 62.523 61.111 27.32 6.79 44.73 4.00
608 610 6.351711 CATCAGATCCTGGAAAACACTGATA 58.648 40.000 21.14 7.27 40.19 2.15
614 616 4.868172 ATCCATCAGATCCTGGAAAACA 57.132 40.909 11.94 0.00 44.41 2.83
623 640 8.954350 CCATATCTTTGTTTATCCATCAGATCC 58.046 37.037 0.00 0.00 36.33 3.36
629 646 7.945134 ACAAGCCATATCTTTGTTTATCCATC 58.055 34.615 0.00 0.00 0.00 3.51
699 719 3.250040 GCACATACTTGTCCGTTTGTCTT 59.750 43.478 0.00 0.00 32.34 3.01
815 835 3.861840 ACCATGGACTGTAGAACAATCG 58.138 45.455 21.47 0.00 0.00 3.34
870 890 4.104102 TGGTAGGGTGAGTTCAGTCAAAAT 59.896 41.667 0.00 0.00 0.00 1.82
881 901 0.252696 TGCCTGATGGTAGGGTGAGT 60.253 55.000 0.00 0.00 38.32 3.41
884 904 0.250038 CGATGCCTGATGGTAGGGTG 60.250 60.000 0.00 0.00 38.32 4.61
887 907 1.302033 GCCGATGCCTGATGGTAGG 60.302 63.158 0.00 0.00 40.95 3.18
923 943 3.334691 TGTGATTTGCTACCTGTGCTAC 58.665 45.455 0.00 0.00 0.00 3.58
933 953 3.081061 GTGGTGTGGATGTGATTTGCTA 58.919 45.455 0.00 0.00 0.00 3.49
990 1011 3.436704 CCTGAAGCTTCATTTTGTAGCGA 59.563 43.478 28.57 2.12 44.13 4.93
1131 1152 0.343372 TCTTGGAGTATGGGAGGCCT 59.657 55.000 3.86 3.86 0.00 5.19
1219 1240 2.261671 GGTGACGGCATCGACAGT 59.738 61.111 0.00 0.00 41.09 3.55
1616 1652 1.641577 CACGTTCTTCCCGAGAATCC 58.358 55.000 0.00 0.00 45.66 3.01
1684 1720 3.623060 CGTGAAGGACCCATCAACTTATG 59.377 47.826 0.00 0.00 0.00 1.90
1791 1829 3.192844 TCTTTCACTACAGAGCGTAAGGG 59.807 47.826 0.00 0.00 38.28 3.95
1859 1897 6.674694 TCGCCAACTTAAGACTACTAGTAG 57.325 41.667 25.30 25.30 39.04 2.57
1867 1905 3.192001 TCACGTATCGCCAACTTAAGACT 59.808 43.478 10.09 0.00 0.00 3.24
1868 1906 3.504863 TCACGTATCGCCAACTTAAGAC 58.495 45.455 10.09 0.00 0.00 3.01
1869 1907 3.192001 ACTCACGTATCGCCAACTTAAGA 59.808 43.478 10.09 0.00 0.00 2.10
2114 2184 8.771920 TGAATTTGTATCCAACACTAGTACAG 57.228 34.615 0.00 0.00 38.00 2.74
2152 2222 2.699954 TCAAAACTAGCTGCCACTAGC 58.300 47.619 9.42 0.00 42.91 3.42
2187 2257 7.821846 GGGATGCATTCAACAAAACCTAATTTA 59.178 33.333 7.43 0.00 0.00 1.40
2293 2365 4.033358 GCTTCGACCTACTTGTCATCAATG 59.967 45.833 0.00 0.00 34.88 2.82
2301 2373 1.629043 TCCAGCTTCGACCTACTTGT 58.371 50.000 0.00 0.00 0.00 3.16
2345 2417 1.167851 CAGCAAAAGCTCATTCCCGA 58.832 50.000 0.00 0.00 0.00 5.14
2350 2422 1.001633 CTTGGCCAGCAAAAGCTCATT 59.998 47.619 5.11 0.00 0.00 2.57
2433 2505 0.597637 CTGTCGTCAGTTCCAACGCT 60.598 55.000 1.16 0.00 38.72 5.07
2463 2535 3.496870 CCTTGCCTTTAGGAAGTCACTGT 60.497 47.826 0.00 0.00 37.39 3.55
2468 2540 2.941860 GCCTCCTTGCCTTTAGGAAGTC 60.942 54.545 0.00 0.00 41.13 3.01
2490 2562 5.300286 CCACATGAGAATCTTAATTGGGACC 59.700 44.000 0.00 0.00 34.92 4.46
2509 2581 1.380785 CCTCTGCCATTGCCCACAT 60.381 57.895 0.00 0.00 36.33 3.21
2532 2604 1.065636 TGTCGACGGTATGGAGACTCT 60.066 52.381 11.62 0.00 33.40 3.24
2553 2625 2.758327 TCATACCAGCGGGCTCGT 60.758 61.111 8.30 0.00 37.90 4.18
2636 2709 0.249073 CATCACCTCGTCGACATCCC 60.249 60.000 17.16 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.