Multiple sequence alignment - TraesCS1A01G166500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G166500 chr1A 100.000 1581 0 0 849 2429 299267823 299269403 0.000000e+00 2920.0
1 TraesCS1A01G166500 chr1A 100.000 671 0 0 1 671 299266975 299267645 0.000000e+00 1240.0
2 TraesCS1A01G166500 chr1A 94.161 411 21 3 2 409 494751707 494752117 7.370000e-175 623.0
3 TraesCS1A01G166500 chr1A 90.220 409 25 11 1 406 256949546 256949150 9.950000e-144 520.0
4 TraesCS1A01G166500 chr1D 96.411 836 27 2 924 1759 247859568 247858736 0.000000e+00 1375.0
5 TraesCS1A01G166500 chr1D 89.831 590 48 10 1835 2417 247858456 247857872 0.000000e+00 747.0
6 TraesCS1A01G166500 chr1D 95.343 408 16 2 1 407 104298392 104298797 0.000000e+00 645.0
7 TraesCS1A01G166500 chr1D 95.094 265 13 0 407 671 247867428 247867164 3.740000e-113 418.0
8 TraesCS1A01G166500 chr1D 82.075 106 18 1 2312 2417 417983080 417983184 3.330000e-14 89.8
9 TraesCS1A01G166500 chr1B 89.782 1008 77 15 1430 2417 329765384 329766385 0.000000e+00 1267.0
10 TraesCS1A01G166500 chr1B 93.950 595 34 2 852 1446 329764642 329765234 0.000000e+00 898.0
11 TraesCS1A01G166500 chr1B 87.938 257 16 3 407 663 329763766 329764007 3.060000e-74 289.0
12 TraesCS1A01G166500 chr2D 93.695 682 41 1 849 1530 60108138 60107459 0.000000e+00 1020.0
13 TraesCS1A01G166500 chr2D 91.418 268 20 2 407 671 60108415 60108148 4.940000e-97 364.0
14 TraesCS1A01G166500 chr2D 76.765 439 75 17 852 1281 60166706 60166286 1.130000e-53 220.0
15 TraesCS1A01G166500 chr2D 96.491 57 2 0 540 596 60078916 60078860 7.150000e-16 95.3
16 TraesCS1A01G166500 chr2B 92.908 705 45 4 849 1551 93933955 93933254 0.000000e+00 1020.0
17 TraesCS1A01G166500 chr2B 79.770 608 103 13 849 1445 94202749 94202151 8.030000e-115 424.0
18 TraesCS1A01G166500 chr2B 92.776 263 19 0 409 671 93934231 93933969 4.900000e-102 381.0
19 TraesCS1A01G166500 chr2B 76.014 567 101 20 849 1405 94224399 94223858 6.660000e-66 261.0
20 TraesCS1A01G166500 chr2B 85.185 135 15 4 1605 1737 93933162 93933031 1.520000e-27 134.0
21 TraesCS1A01G166500 chr2B 76.966 178 29 5 420 594 94203032 94202864 9.250000e-15 91.6
22 TraesCS1A01G166500 chr2A 82.122 867 111 25 849 1696 60100335 60099494 0.000000e+00 702.0
23 TraesCS1A01G166500 chr2A 79.930 568 98 11 849 1408 60609196 60608637 1.050000e-108 403.0
24 TraesCS1A01G166500 chr2A 78.631 599 112 10 849 1438 60195177 60194586 1.360000e-102 383.0
25 TraesCS1A01G166500 chr2A 91.960 199 13 1 407 605 60100660 60100465 2.380000e-70 276.0
26 TraesCS1A01G166500 chr2A 74.870 577 116 24 849 1418 60711237 60710683 4.040000e-58 235.0
27 TraesCS1A01G166500 chr2A 88.889 81 6 2 521 598 60195364 60195284 1.990000e-16 97.1
28 TraesCS1A01G166500 chr2A 87.654 81 7 2 521 598 60609383 60609303 9.250000e-15 91.6
29 TraesCS1A01G166500 chr2A 80.000 110 21 1 2309 2417 759791688 759791797 2.000000e-11 80.5
30 TraesCS1A01G166500 chr3D 95.599 409 16 2 1 407 7504703 7504295 0.000000e+00 654.0
31 TraesCS1A01G166500 chr6A 94.377 409 20 2 2 407 37703069 37703477 2.050000e-175 625.0
32 TraesCS1A01G166500 chr7B 93.873 408 23 2 1 406 242997646 242998053 4.440000e-172 614.0
33 TraesCS1A01G166500 chr7B 90.299 402 33 4 9 409 477995383 477994987 2.770000e-144 521.0
34 TraesCS1A01G166500 chr7B 84.000 100 11 5 2320 2417 732426210 732426306 9.250000e-15 91.6
35 TraesCS1A01G166500 chr5B 93.674 411 23 3 1 409 509658598 509659007 1.600000e-171 612.0
36 TraesCS1A01G166500 chr5B 84.466 103 14 2 2312 2412 541095706 541095604 1.540000e-17 100.0
37 TraesCS1A01G166500 chr7A 93.627 408 25 1 1 407 637676043 637675636 2.070000e-170 608.0
38 TraesCS1A01G166500 chr7A 77.982 109 18 6 2312 2417 595290898 595291003 2.020000e-06 63.9
39 TraesCS1A01G166500 chr5A 83.333 108 15 2 2311 2417 78944546 78944441 1.990000e-16 97.1
40 TraesCS1A01G166500 chr3B 85.135 74 9 2 2310 2382 528135330 528135258 9.310000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G166500 chr1A 299266975 299269403 2428 False 2080.000000 2920 100.000000 1 2429 2 chr1A.!!$F2 2428
1 TraesCS1A01G166500 chr1D 247857872 247859568 1696 True 1061.000000 1375 93.121000 924 2417 2 chr1D.!!$R2 1493
2 TraesCS1A01G166500 chr1B 329763766 329766385 2619 False 818.000000 1267 90.556667 407 2417 3 chr1B.!!$F1 2010
3 TraesCS1A01G166500 chr2D 60107459 60108415 956 True 692.000000 1020 92.556500 407 1530 2 chr2D.!!$R3 1123
4 TraesCS1A01G166500 chr2B 93933031 93934231 1200 True 511.666667 1020 90.289667 409 1737 3 chr2B.!!$R2 1328
5 TraesCS1A01G166500 chr2B 94223858 94224399 541 True 261.000000 261 76.014000 849 1405 1 chr2B.!!$R1 556
6 TraesCS1A01G166500 chr2B 94202151 94203032 881 True 257.800000 424 78.368000 420 1445 2 chr2B.!!$R3 1025
7 TraesCS1A01G166500 chr2A 60099494 60100660 1166 True 489.000000 702 87.041000 407 1696 2 chr2A.!!$R2 1289
8 TraesCS1A01G166500 chr2A 60608637 60609383 746 True 247.300000 403 83.792000 521 1408 2 chr2A.!!$R4 887
9 TraesCS1A01G166500 chr2A 60194586 60195364 778 True 240.050000 383 83.760000 521 1438 2 chr2A.!!$R3 917
10 TraesCS1A01G166500 chr2A 60710683 60711237 554 True 235.000000 235 74.870000 849 1418 1 chr2A.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.036164 TGGTGGAGAAACATGTCCGG 59.964 55.0 0.0 0.0 35.37 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 3007 0.529773 CACACGCACACCACTACACT 60.53 55.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.995511 CGTAAGGATTTGGAACCTTATCAA 57.004 37.500 0.00 0.00 46.09 2.57
28 29 7.385778 CGTAAGGATTTGGAACCTTATCAAA 57.614 36.000 0.00 0.00 46.09 2.69
29 30 7.822658 CGTAAGGATTTGGAACCTTATCAAAA 58.177 34.615 0.00 0.00 46.09 2.44
30 31 8.301002 CGTAAGGATTTGGAACCTTATCAAAAA 58.699 33.333 0.00 0.00 46.09 1.94
31 32 9.419297 GTAAGGATTTGGAACCTTATCAAAAAC 57.581 33.333 0.00 0.00 46.09 2.43
32 33 7.855784 AGGATTTGGAACCTTATCAAAAACT 57.144 32.000 0.00 0.00 34.63 2.66
33 34 7.670364 AGGATTTGGAACCTTATCAAAAACTG 58.330 34.615 0.00 0.00 34.63 3.16
34 35 6.873605 GGATTTGGAACCTTATCAAAAACTGG 59.126 38.462 0.00 0.00 34.63 4.00
35 36 4.864704 TGGAACCTTATCAAAAACTGGC 57.135 40.909 0.00 0.00 0.00 4.85
36 37 4.479158 TGGAACCTTATCAAAAACTGGCT 58.521 39.130 0.00 0.00 0.00 4.75
37 38 4.522789 TGGAACCTTATCAAAAACTGGCTC 59.477 41.667 0.00 0.00 0.00 4.70
38 39 4.379499 GGAACCTTATCAAAAACTGGCTCG 60.379 45.833 0.00 0.00 0.00 5.03
39 40 3.081804 ACCTTATCAAAAACTGGCTCGG 58.918 45.455 0.00 0.00 0.00 4.63
40 41 3.081804 CCTTATCAAAAACTGGCTCGGT 58.918 45.455 0.00 0.00 0.00 4.69
41 42 3.127030 CCTTATCAAAAACTGGCTCGGTC 59.873 47.826 0.00 0.00 0.00 4.79
42 43 2.568623 ATCAAAAACTGGCTCGGTCT 57.431 45.000 0.00 0.00 0.00 3.85
43 44 2.341846 TCAAAAACTGGCTCGGTCTT 57.658 45.000 0.00 0.00 0.00 3.01
44 45 2.218603 TCAAAAACTGGCTCGGTCTTC 58.781 47.619 0.00 0.00 0.00 2.87
45 46 1.946768 CAAAAACTGGCTCGGTCTTCA 59.053 47.619 0.00 0.00 0.00 3.02
46 47 2.554032 CAAAAACTGGCTCGGTCTTCAT 59.446 45.455 0.00 0.00 0.00 2.57
47 48 1.813513 AAACTGGCTCGGTCTTCATG 58.186 50.000 0.00 0.00 0.00 3.07
48 49 0.687354 AACTGGCTCGGTCTTCATGT 59.313 50.000 0.00 0.00 0.00 3.21
49 50 0.036952 ACTGGCTCGGTCTTCATGTG 60.037 55.000 0.00 0.00 0.00 3.21
50 51 0.247460 CTGGCTCGGTCTTCATGTGA 59.753 55.000 0.00 0.00 0.00 3.58
51 52 0.904649 TGGCTCGGTCTTCATGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
52 53 1.278985 TGGCTCGGTCTTCATGTGATT 59.721 47.619 0.00 0.00 0.00 2.57
53 54 1.667724 GGCTCGGTCTTCATGTGATTG 59.332 52.381 0.00 0.00 0.00 2.67
54 55 2.621338 GCTCGGTCTTCATGTGATTGA 58.379 47.619 0.00 0.00 0.00 2.57
55 56 2.349886 GCTCGGTCTTCATGTGATTGAC 59.650 50.000 0.00 7.63 0.00 3.18
56 57 3.588955 CTCGGTCTTCATGTGATTGACA 58.411 45.455 14.25 0.00 39.53 3.58
66 67 2.036556 GTGATTGACACGGCAACTTG 57.963 50.000 0.00 0.00 42.58 3.16
67 68 0.950836 TGATTGACACGGCAACTTGG 59.049 50.000 0.00 0.00 40.86 3.61
68 69 0.240945 GATTGACACGGCAACTTGGG 59.759 55.000 0.00 0.00 40.86 4.12
69 70 1.178534 ATTGACACGGCAACTTGGGG 61.179 55.000 0.00 0.00 40.86 4.96
70 71 2.112297 GACACGGCAACTTGGGGA 59.888 61.111 0.00 0.00 40.86 4.81
71 72 1.527380 GACACGGCAACTTGGGGAA 60.527 57.895 0.00 0.00 40.86 3.97
72 73 1.792118 GACACGGCAACTTGGGGAAC 61.792 60.000 0.00 0.00 40.86 3.62
87 88 1.802069 GGAACCTTGCACTCACTCTC 58.198 55.000 0.00 0.00 0.00 3.20
88 89 1.423395 GAACCTTGCACTCACTCTCG 58.577 55.000 0.00 0.00 0.00 4.04
89 90 0.601311 AACCTTGCACTCACTCTCGC 60.601 55.000 0.00 0.00 0.00 5.03
90 91 1.005748 CCTTGCACTCACTCTCGCA 60.006 57.895 0.00 0.00 0.00 5.10
91 92 0.390866 CCTTGCACTCACTCTCGCAT 60.391 55.000 0.00 0.00 33.71 4.73
92 93 1.436600 CTTGCACTCACTCTCGCATT 58.563 50.000 0.00 0.00 33.71 3.56
93 94 1.128136 CTTGCACTCACTCTCGCATTG 59.872 52.381 0.00 0.00 33.71 2.82
94 95 0.671472 TGCACTCACTCTCGCATTGG 60.671 55.000 0.00 0.00 0.00 3.16
95 96 0.671781 GCACTCACTCTCGCATTGGT 60.672 55.000 0.00 0.00 0.00 3.67
96 97 1.073964 CACTCACTCTCGCATTGGTG 58.926 55.000 0.00 0.00 0.00 4.17
97 98 0.036952 ACTCACTCTCGCATTGGTGG 60.037 55.000 0.00 0.00 0.00 4.61
98 99 0.247460 CTCACTCTCGCATTGGTGGA 59.753 55.000 0.00 0.00 0.00 4.02
99 100 0.247460 TCACTCTCGCATTGGTGGAG 59.753 55.000 0.00 0.00 0.00 3.86
100 101 0.247460 CACTCTCGCATTGGTGGAGA 59.753 55.000 0.00 0.00 33.50 3.71
101 102 0.976641 ACTCTCGCATTGGTGGAGAA 59.023 50.000 0.00 0.00 33.90 2.87
102 103 1.347707 ACTCTCGCATTGGTGGAGAAA 59.652 47.619 0.00 0.00 33.90 2.52
103 104 1.734465 CTCTCGCATTGGTGGAGAAAC 59.266 52.381 0.00 0.00 33.90 2.78
104 105 1.071542 TCTCGCATTGGTGGAGAAACA 59.928 47.619 0.00 0.00 32.39 2.83
105 106 2.086869 CTCGCATTGGTGGAGAAACAT 58.913 47.619 0.00 0.00 0.00 2.71
106 107 1.811965 TCGCATTGGTGGAGAAACATG 59.188 47.619 0.00 0.00 0.00 3.21
107 108 1.541147 CGCATTGGTGGAGAAACATGT 59.459 47.619 0.00 0.00 0.00 3.21
108 109 2.414559 CGCATTGGTGGAGAAACATGTC 60.415 50.000 0.00 0.00 0.00 3.06
109 110 2.094545 GCATTGGTGGAGAAACATGTCC 60.095 50.000 0.00 0.00 0.00 4.02
110 111 1.890876 TTGGTGGAGAAACATGTCCG 58.109 50.000 0.00 0.00 35.37 4.79
111 112 0.036164 TGGTGGAGAAACATGTCCGG 59.964 55.000 0.00 0.00 35.37 5.14
112 113 0.323629 GGTGGAGAAACATGTCCGGA 59.676 55.000 0.00 0.00 35.37 5.14
113 114 1.271163 GGTGGAGAAACATGTCCGGAA 60.271 52.381 5.23 0.00 35.37 4.30
114 115 2.076863 GTGGAGAAACATGTCCGGAAG 58.923 52.381 5.23 1.18 35.37 3.46
115 116 1.087501 GGAGAAACATGTCCGGAAGC 58.912 55.000 5.23 0.00 0.00 3.86
116 117 1.610624 GGAGAAACATGTCCGGAAGCA 60.611 52.381 5.23 0.00 0.00 3.91
117 118 2.151202 GAGAAACATGTCCGGAAGCAA 58.849 47.619 5.23 0.00 0.00 3.91
118 119 1.880027 AGAAACATGTCCGGAAGCAAC 59.120 47.619 5.23 0.00 0.00 4.17
119 120 1.606668 GAAACATGTCCGGAAGCAACA 59.393 47.619 5.23 0.00 0.00 3.33
120 121 1.909700 AACATGTCCGGAAGCAACAT 58.090 45.000 5.23 2.04 36.71 2.71
121 122 1.453155 ACATGTCCGGAAGCAACATC 58.547 50.000 5.23 0.00 34.89 3.06
122 123 0.734889 CATGTCCGGAAGCAACATCC 59.265 55.000 5.23 0.00 34.89 3.51
123 124 0.394352 ATGTCCGGAAGCAACATCCC 60.394 55.000 5.23 0.00 32.67 3.85
124 125 1.749258 GTCCGGAAGCAACATCCCC 60.749 63.158 5.23 0.00 33.13 4.81
125 126 2.227757 TCCGGAAGCAACATCCCCA 61.228 57.895 0.00 0.00 33.13 4.96
126 127 1.304052 CCGGAAGCAACATCCCCAA 60.304 57.895 0.00 0.00 33.13 4.12
127 128 0.684153 CCGGAAGCAACATCCCCAAT 60.684 55.000 0.00 0.00 33.13 3.16
128 129 1.409521 CCGGAAGCAACATCCCCAATA 60.410 52.381 0.00 0.00 33.13 1.90
129 130 1.949525 CGGAAGCAACATCCCCAATAG 59.050 52.381 0.00 0.00 33.13 1.73
130 131 2.421388 CGGAAGCAACATCCCCAATAGA 60.421 50.000 0.00 0.00 33.13 1.98
131 132 3.631250 GGAAGCAACATCCCCAATAGAA 58.369 45.455 0.00 0.00 0.00 2.10
132 133 4.023291 GGAAGCAACATCCCCAATAGAAA 58.977 43.478 0.00 0.00 0.00 2.52
133 134 4.098501 GGAAGCAACATCCCCAATAGAAAG 59.901 45.833 0.00 0.00 0.00 2.62
134 135 3.635591 AGCAACATCCCCAATAGAAAGG 58.364 45.455 0.00 0.00 0.00 3.11
135 136 2.101415 GCAACATCCCCAATAGAAAGGC 59.899 50.000 0.00 0.00 0.00 4.35
136 137 2.695147 CAACATCCCCAATAGAAAGGCC 59.305 50.000 0.00 0.00 0.00 5.19
137 138 1.929494 ACATCCCCAATAGAAAGGCCA 59.071 47.619 5.01 0.00 0.00 5.36
138 139 2.519691 ACATCCCCAATAGAAAGGCCAT 59.480 45.455 5.01 0.00 0.00 4.40
139 140 2.754012 TCCCCAATAGAAAGGCCATG 57.246 50.000 5.01 0.00 0.00 3.66
140 141 1.217689 TCCCCAATAGAAAGGCCATGG 59.782 52.381 7.63 7.63 0.00 3.66
141 142 1.043022 CCCAATAGAAAGGCCATGGC 58.957 55.000 29.47 29.47 41.06 4.40
142 143 1.688942 CCCAATAGAAAGGCCATGGCA 60.689 52.381 36.56 16.94 44.11 4.92
143 144 2.322658 CCAATAGAAAGGCCATGGCAT 58.677 47.619 36.56 29.47 44.11 4.40
144 145 2.298163 CCAATAGAAAGGCCATGGCATC 59.702 50.000 36.56 28.43 44.11 3.91
145 146 2.298163 CAATAGAAAGGCCATGGCATCC 59.702 50.000 36.56 24.32 44.11 3.51
146 147 0.185901 TAGAAAGGCCATGGCATCCC 59.814 55.000 36.56 23.97 44.11 3.85
147 148 1.075748 GAAAGGCCATGGCATCCCT 60.076 57.895 36.56 22.05 44.11 4.20
148 149 1.075748 AAAGGCCATGGCATCCCTC 60.076 57.895 36.56 18.94 44.11 4.30
149 150 1.877672 AAAGGCCATGGCATCCCTCA 61.878 55.000 36.56 0.00 44.11 3.86
150 151 2.520260 GGCCATGGCATCCCTCAC 60.520 66.667 36.56 14.15 44.11 3.51
151 152 2.520260 GCCATGGCATCCCTCACC 60.520 66.667 32.08 0.00 41.49 4.02
152 153 3.009275 CCATGGCATCCCTCACCA 58.991 61.111 0.00 0.00 37.99 4.17
153 154 1.540166 CCATGGCATCCCTCACCAT 59.460 57.895 0.00 0.00 45.08 3.55
155 156 1.152610 ATGGCATCCCTCACCATGC 60.153 57.895 0.00 0.00 42.59 4.06
156 157 1.652187 ATGGCATCCCTCACCATGCT 61.652 55.000 0.00 0.00 44.20 3.79
157 158 0.987613 TGGCATCCCTCACCATGCTA 60.988 55.000 4.05 0.00 44.20 3.49
158 159 0.250640 GGCATCCCTCACCATGCTAG 60.251 60.000 4.05 0.00 44.20 3.42
159 160 0.471617 GCATCCCTCACCATGCTAGT 59.528 55.000 0.00 0.00 41.93 2.57
160 161 1.542108 GCATCCCTCACCATGCTAGTC 60.542 57.143 0.00 0.00 41.93 2.59
161 162 1.043816 ATCCCTCACCATGCTAGTCG 58.956 55.000 0.00 0.00 0.00 4.18
162 163 1.043116 TCCCTCACCATGCTAGTCGG 61.043 60.000 0.00 0.00 0.00 4.79
163 164 1.227380 CCTCACCATGCTAGTCGGC 60.227 63.158 0.00 0.00 0.00 5.54
164 165 1.680522 CCTCACCATGCTAGTCGGCT 61.681 60.000 0.00 0.00 0.00 5.52
165 166 0.529337 CTCACCATGCTAGTCGGCTG 60.529 60.000 0.00 0.00 0.00 4.85
166 167 1.522355 CACCATGCTAGTCGGCTGG 60.522 63.158 0.00 0.00 36.92 4.85
167 168 1.685765 ACCATGCTAGTCGGCTGGA 60.686 57.895 3.86 0.00 35.78 3.86
168 169 1.227380 CCATGCTAGTCGGCTGGAC 60.227 63.158 3.86 0.00 46.45 4.02
175 176 2.187946 GTCGGCTGGACCATCTGG 59.812 66.667 4.33 0.00 39.90 3.86
176 177 2.038813 TCGGCTGGACCATCTGGA 59.961 61.111 2.55 0.00 39.03 3.86
177 178 1.612146 TCGGCTGGACCATCTGGAA 60.612 57.895 2.55 0.00 39.03 3.53
178 179 1.198094 TCGGCTGGACCATCTGGAAA 61.198 55.000 2.55 0.00 39.03 3.13
179 180 0.745845 CGGCTGGACCATCTGGAAAG 60.746 60.000 2.55 0.00 39.03 2.62
180 181 0.620556 GGCTGGACCATCTGGAAAGA 59.379 55.000 2.55 0.00 38.86 2.52
181 182 1.407989 GGCTGGACCATCTGGAAAGAG 60.408 57.143 2.55 0.00 38.86 2.85
182 183 1.556911 GCTGGACCATCTGGAAAGAGA 59.443 52.381 2.55 0.00 38.94 3.10
183 184 2.419851 GCTGGACCATCTGGAAAGAGAG 60.420 54.545 2.55 0.00 38.94 3.20
184 185 3.102972 CTGGACCATCTGGAAAGAGAGA 58.897 50.000 2.55 0.00 38.94 3.10
185 186 3.517100 CTGGACCATCTGGAAAGAGAGAA 59.483 47.826 2.55 0.00 38.94 2.87
186 187 3.909995 TGGACCATCTGGAAAGAGAGAAA 59.090 43.478 2.55 0.00 38.94 2.52
187 188 4.537688 TGGACCATCTGGAAAGAGAGAAAT 59.462 41.667 2.55 0.00 38.94 2.17
188 189 4.880696 GGACCATCTGGAAAGAGAGAAATG 59.119 45.833 2.55 0.00 38.94 2.32
189 190 4.268359 ACCATCTGGAAAGAGAGAAATGC 58.732 43.478 2.55 0.00 38.94 3.56
190 191 4.018597 ACCATCTGGAAAGAGAGAAATGCT 60.019 41.667 2.55 0.00 38.94 3.79
191 192 4.575645 CCATCTGGAAAGAGAGAAATGCTC 59.424 45.833 0.00 0.00 39.85 4.26
192 193 4.897509 TCTGGAAAGAGAGAAATGCTCA 57.102 40.909 0.00 0.00 46.45 4.26
193 194 5.432680 TCTGGAAAGAGAGAAATGCTCAT 57.567 39.130 0.00 0.00 46.45 2.90
194 195 5.183969 TCTGGAAAGAGAGAAATGCTCATG 58.816 41.667 0.00 0.00 46.45 3.07
195 196 3.693085 TGGAAAGAGAGAAATGCTCATGC 59.307 43.478 0.00 0.00 46.45 4.06
206 207 1.618487 TGCTCATGCATTCCAACACA 58.382 45.000 0.00 0.00 45.31 3.72
207 208 1.962100 TGCTCATGCATTCCAACACAA 59.038 42.857 0.00 0.00 45.31 3.33
208 209 2.364647 TGCTCATGCATTCCAACACAAA 59.635 40.909 0.00 0.00 45.31 2.83
209 210 3.007074 TGCTCATGCATTCCAACACAAAT 59.993 39.130 0.00 0.00 45.31 2.32
210 211 3.615496 GCTCATGCATTCCAACACAAATC 59.385 43.478 0.00 0.00 39.41 2.17
211 212 4.811908 CTCATGCATTCCAACACAAATCA 58.188 39.130 0.00 0.00 0.00 2.57
212 213 5.211174 TCATGCATTCCAACACAAATCAA 57.789 34.783 0.00 0.00 0.00 2.57
213 214 4.989797 TCATGCATTCCAACACAAATCAAC 59.010 37.500 0.00 0.00 0.00 3.18
214 215 4.669206 TGCATTCCAACACAAATCAACT 57.331 36.364 0.00 0.00 0.00 3.16
215 216 4.619973 TGCATTCCAACACAAATCAACTC 58.380 39.130 0.00 0.00 0.00 3.01
216 217 3.989817 GCATTCCAACACAAATCAACTCC 59.010 43.478 0.00 0.00 0.00 3.85
217 218 3.980646 TTCCAACACAAATCAACTCCG 57.019 42.857 0.00 0.00 0.00 4.63
218 219 2.226330 TCCAACACAAATCAACTCCGG 58.774 47.619 0.00 0.00 0.00 5.14
219 220 1.335872 CCAACACAAATCAACTCCGGC 60.336 52.381 0.00 0.00 0.00 6.13
220 221 1.336440 CAACACAAATCAACTCCGGCA 59.664 47.619 0.00 0.00 0.00 5.69
221 222 0.951558 ACACAAATCAACTCCGGCAC 59.048 50.000 0.00 0.00 0.00 5.01
222 223 0.240945 CACAAATCAACTCCGGCACC 59.759 55.000 0.00 0.00 0.00 5.01
223 224 1.234615 ACAAATCAACTCCGGCACCG 61.235 55.000 1.02 1.02 39.44 4.94
233 234 2.264480 CGGCACCGGTCATCTTCA 59.736 61.111 2.59 0.00 35.56 3.02
234 235 1.811266 CGGCACCGGTCATCTTCAG 60.811 63.158 2.59 0.00 35.56 3.02
235 236 1.296715 GGCACCGGTCATCTTCAGT 59.703 57.895 2.59 0.00 0.00 3.41
236 237 0.535335 GGCACCGGTCATCTTCAGTA 59.465 55.000 2.59 0.00 0.00 2.74
237 238 1.139058 GGCACCGGTCATCTTCAGTAT 59.861 52.381 2.59 0.00 0.00 2.12
238 239 2.474816 GCACCGGTCATCTTCAGTATC 58.525 52.381 2.59 0.00 0.00 2.24
239 240 2.159099 GCACCGGTCATCTTCAGTATCA 60.159 50.000 2.59 0.00 0.00 2.15
240 241 3.493350 GCACCGGTCATCTTCAGTATCAT 60.493 47.826 2.59 0.00 0.00 2.45
241 242 4.302455 CACCGGTCATCTTCAGTATCATC 58.698 47.826 2.59 0.00 0.00 2.92
242 243 3.960755 ACCGGTCATCTTCAGTATCATCA 59.039 43.478 0.00 0.00 0.00 3.07
243 244 4.405680 ACCGGTCATCTTCAGTATCATCAA 59.594 41.667 0.00 0.00 0.00 2.57
244 245 5.104941 ACCGGTCATCTTCAGTATCATCAAA 60.105 40.000 0.00 0.00 0.00 2.69
245 246 5.817296 CCGGTCATCTTCAGTATCATCAAAA 59.183 40.000 0.00 0.00 0.00 2.44
246 247 6.018425 CCGGTCATCTTCAGTATCATCAAAAG 60.018 42.308 0.00 0.00 0.00 2.27
247 248 6.018425 CGGTCATCTTCAGTATCATCAAAAGG 60.018 42.308 0.00 0.00 0.00 3.11
248 249 6.261826 GGTCATCTTCAGTATCATCAAAAGGG 59.738 42.308 0.00 0.00 0.00 3.95
249 250 7.050377 GTCATCTTCAGTATCATCAAAAGGGA 58.950 38.462 0.00 0.00 0.00 4.20
250 251 7.226325 GTCATCTTCAGTATCATCAAAAGGGAG 59.774 40.741 0.00 0.00 0.00 4.30
251 252 5.994250 TCTTCAGTATCATCAAAAGGGAGG 58.006 41.667 0.00 0.00 0.00 4.30
252 253 4.156455 TCAGTATCATCAAAAGGGAGGC 57.844 45.455 0.00 0.00 0.00 4.70
253 254 3.782523 TCAGTATCATCAAAAGGGAGGCT 59.217 43.478 0.00 0.00 0.00 4.58
254 255 4.968719 TCAGTATCATCAAAAGGGAGGCTA 59.031 41.667 0.00 0.00 0.00 3.93
255 256 5.070981 TCAGTATCATCAAAAGGGAGGCTAG 59.929 44.000 0.00 0.00 0.00 3.42
256 257 5.070981 CAGTATCATCAAAAGGGAGGCTAGA 59.929 44.000 0.00 0.00 0.00 2.43
257 258 3.914426 TCATCAAAAGGGAGGCTAGAC 57.086 47.619 0.00 0.00 0.00 2.59
258 259 3.454858 TCATCAAAAGGGAGGCTAGACT 58.545 45.455 0.00 0.00 0.00 3.24
259 260 3.846588 TCATCAAAAGGGAGGCTAGACTT 59.153 43.478 0.00 0.00 0.00 3.01
260 261 3.983044 TCAAAAGGGAGGCTAGACTTC 57.017 47.619 0.00 0.00 0.00 3.01
261 262 2.233922 TCAAAAGGGAGGCTAGACTTCG 59.766 50.000 0.00 0.00 0.00 3.79
262 263 1.196012 AAAGGGAGGCTAGACTTCGG 58.804 55.000 0.00 0.00 0.00 4.30
263 264 0.688087 AAGGGAGGCTAGACTTCGGG 60.688 60.000 0.00 0.00 0.00 5.14
264 265 1.381463 GGGAGGCTAGACTTCGGGT 60.381 63.158 0.00 0.00 0.00 5.28
265 266 0.976590 GGGAGGCTAGACTTCGGGTT 60.977 60.000 0.00 0.00 0.00 4.11
266 267 1.687368 GGGAGGCTAGACTTCGGGTTA 60.687 57.143 0.00 0.00 0.00 2.85
267 268 2.317973 GGAGGCTAGACTTCGGGTTAT 58.682 52.381 0.00 0.00 0.00 1.89
268 269 2.296752 GGAGGCTAGACTTCGGGTTATC 59.703 54.545 0.00 0.00 0.00 1.75
269 270 1.955080 AGGCTAGACTTCGGGTTATCG 59.045 52.381 0.00 0.00 0.00 2.92
270 271 1.602416 GGCTAGACTTCGGGTTATCGC 60.602 57.143 0.00 0.00 0.00 4.58
303 304 5.862678 AAATTGGGAAACATAATACCGGG 57.137 39.130 6.32 0.00 0.00 5.73
304 305 4.799715 ATTGGGAAACATAATACCGGGA 57.200 40.909 6.32 0.00 0.00 5.14
305 306 3.849563 TGGGAAACATAATACCGGGAG 57.150 47.619 6.32 0.00 0.00 4.30
306 307 3.386063 TGGGAAACATAATACCGGGAGA 58.614 45.455 6.32 0.00 0.00 3.71
307 308 3.389983 TGGGAAACATAATACCGGGAGAG 59.610 47.826 6.32 0.00 0.00 3.20
308 309 3.390311 GGGAAACATAATACCGGGAGAGT 59.610 47.826 6.32 0.00 0.00 3.24
309 310 4.590222 GGGAAACATAATACCGGGAGAGTA 59.410 45.833 6.32 0.00 0.00 2.59
310 311 5.070847 GGGAAACATAATACCGGGAGAGTAA 59.929 44.000 6.32 0.00 0.00 2.24
311 312 6.239800 GGGAAACATAATACCGGGAGAGTAAT 60.240 42.308 6.32 0.00 0.00 1.89
312 313 6.649557 GGAAACATAATACCGGGAGAGTAATG 59.350 42.308 6.32 0.47 0.00 1.90
313 314 6.989155 AACATAATACCGGGAGAGTAATGA 57.011 37.500 6.32 0.00 0.00 2.57
314 315 6.342338 ACATAATACCGGGAGAGTAATGAC 57.658 41.667 6.32 0.00 0.00 3.06
315 316 6.075984 ACATAATACCGGGAGAGTAATGACT 58.924 40.000 6.32 0.00 39.20 3.41
316 317 6.553852 ACATAATACCGGGAGAGTAATGACTT 59.446 38.462 6.32 0.00 35.45 3.01
317 318 5.952347 AATACCGGGAGAGTAATGACTTT 57.048 39.130 6.32 0.00 35.45 2.66
318 319 5.952347 ATACCGGGAGAGTAATGACTTTT 57.048 39.130 6.32 0.00 35.45 2.27
319 320 4.635699 ACCGGGAGAGTAATGACTTTTT 57.364 40.909 6.32 0.00 35.45 1.94
320 321 4.576879 ACCGGGAGAGTAATGACTTTTTC 58.423 43.478 6.32 0.00 35.45 2.29
321 322 4.286291 ACCGGGAGAGTAATGACTTTTTCT 59.714 41.667 6.32 0.00 35.45 2.52
322 323 5.482878 ACCGGGAGAGTAATGACTTTTTCTA 59.517 40.000 6.32 0.00 35.45 2.10
323 324 6.156429 ACCGGGAGAGTAATGACTTTTTCTAT 59.844 38.462 6.32 0.00 35.45 1.98
324 325 7.343833 ACCGGGAGAGTAATGACTTTTTCTATA 59.656 37.037 6.32 0.00 35.45 1.31
325 326 8.368668 CCGGGAGAGTAATGACTTTTTCTATAT 58.631 37.037 0.00 0.00 35.45 0.86
326 327 9.765795 CGGGAGAGTAATGACTTTTTCTATATT 57.234 33.333 0.00 0.00 35.45 1.28
335 336 9.533831 AATGACTTTTTCTATATTTGAGGTGGT 57.466 29.630 0.00 0.00 0.00 4.16
336 337 8.335532 TGACTTTTTCTATATTTGAGGTGGTG 57.664 34.615 0.00 0.00 0.00 4.17
337 338 7.942341 TGACTTTTTCTATATTTGAGGTGGTGT 59.058 33.333 0.00 0.00 0.00 4.16
338 339 8.110860 ACTTTTTCTATATTTGAGGTGGTGTG 57.889 34.615 0.00 0.00 0.00 3.82
339 340 7.724061 ACTTTTTCTATATTTGAGGTGGTGTGT 59.276 33.333 0.00 0.00 0.00 3.72
340 341 9.226606 CTTTTTCTATATTTGAGGTGGTGTGTA 57.773 33.333 0.00 0.00 0.00 2.90
341 342 9.575868 TTTTTCTATATTTGAGGTGGTGTGTAA 57.424 29.630 0.00 0.00 0.00 2.41
342 343 8.556213 TTTCTATATTTGAGGTGGTGTGTAAC 57.444 34.615 0.00 0.00 37.35 2.50
378 379 9.159254 TCTCCTTCTTAATTAATAGATGAGGCA 57.841 33.333 0.00 0.00 0.00 4.75
379 380 9.784531 CTCCTTCTTAATTAATAGATGAGGCAA 57.215 33.333 0.00 0.00 0.00 4.52
382 383 9.890352 CTTCTTAATTAATAGATGAGGCAAAGC 57.110 33.333 0.00 0.00 0.00 3.51
383 384 9.632638 TTCTTAATTAATAGATGAGGCAAAGCT 57.367 29.630 0.00 0.00 0.00 3.74
384 385 9.632638 TCTTAATTAATAGATGAGGCAAAGCTT 57.367 29.630 0.00 0.00 0.00 3.74
388 389 5.702349 AATAGATGAGGCAAAGCTTATGC 57.298 39.130 19.20 19.20 43.08 3.14
389 390 1.945394 AGATGAGGCAAAGCTTATGCG 59.055 47.619 20.07 4.69 44.75 4.73
390 391 1.672881 GATGAGGCAAAGCTTATGCGT 59.327 47.619 20.79 20.79 44.75 5.24
392 393 3.558674 AGGCAAAGCTTATGCGTCT 57.441 47.368 20.07 13.26 44.75 4.18
393 394 1.089920 AGGCAAAGCTTATGCGTCTG 58.910 50.000 20.07 7.40 44.75 3.51
394 395 0.804989 GGCAAAGCTTATGCGTCTGT 59.195 50.000 20.07 0.00 44.75 3.41
395 396 1.200020 GGCAAAGCTTATGCGTCTGTT 59.800 47.619 20.07 0.00 44.75 3.16
396 397 2.351738 GGCAAAGCTTATGCGTCTGTTT 60.352 45.455 20.07 0.00 44.75 2.83
397 398 2.911102 GCAAAGCTTATGCGTCTGTTTC 59.089 45.455 14.80 0.00 45.42 2.78
398 399 3.155998 CAAAGCTTATGCGTCTGTTTCG 58.844 45.455 0.00 0.00 45.42 3.46
399 400 2.363788 AGCTTATGCGTCTGTTTCGA 57.636 45.000 0.00 0.00 45.42 3.71
400 401 2.683968 AGCTTATGCGTCTGTTTCGAA 58.316 42.857 0.00 0.00 45.42 3.71
401 402 3.064207 AGCTTATGCGTCTGTTTCGAAA 58.936 40.909 6.47 6.47 45.42 3.46
402 403 3.496884 AGCTTATGCGTCTGTTTCGAAAA 59.503 39.130 13.10 2.56 45.42 2.29
403 404 4.024387 AGCTTATGCGTCTGTTTCGAAAAA 60.024 37.500 13.10 6.34 45.42 1.94
508 509 3.362706 AGAAGGATGTAGAAGCCGTGTA 58.637 45.455 0.00 0.00 0.00 2.90
606 610 1.591158 TCGCGGTAAGAAAATGATCGC 59.409 47.619 6.13 0.00 38.56 4.58
921 1526 0.391661 CTAGCGTGACACAGGCCAAT 60.392 55.000 5.01 0.00 44.91 3.16
922 1527 0.036164 TAGCGTGACACAGGCCAATT 59.964 50.000 5.01 0.00 44.91 2.32
1072 1677 1.538876 AGGGGCAGGCTCTACAACA 60.539 57.895 0.00 0.00 0.00 3.33
1218 1829 4.957296 ACAACGACTACTTCATCAACCTT 58.043 39.130 0.00 0.00 0.00 3.50
1506 2289 1.433534 CTGCTTTGAGAGTCGAACCC 58.566 55.000 0.00 0.00 0.00 4.11
1507 2290 0.034896 TGCTTTGAGAGTCGAACCCC 59.965 55.000 0.00 0.00 0.00 4.95
1531 2314 1.850377 TTTTGCTGCACAATGAACCG 58.150 45.000 0.00 0.00 38.31 4.44
1535 2347 0.661187 GCTGCACAATGAACCGTGTG 60.661 55.000 0.00 0.00 46.40 3.82
1550 2362 1.109323 GTGTGCTTTCAGCCCCTTGT 61.109 55.000 0.00 0.00 41.51 3.16
1798 2647 2.607635 TCACTTCAGTCGCACACTTTTC 59.392 45.455 0.00 0.00 30.26 2.29
1818 2667 7.448161 ACTTTTCACATGTTCCATATCTGTTCA 59.552 33.333 0.00 0.00 0.00 3.18
1927 2967 0.659417 TTTCTCGAGACGTGTCGTGC 60.659 55.000 30.67 0.00 41.37 5.34
1983 3028 1.034356 TAGTGTAGTGGTGTGCGTGT 58.966 50.000 0.00 0.00 0.00 4.49
2042 3087 6.591062 TGTTTTACGACCTGTATCCATGTAAC 59.409 38.462 0.00 0.00 31.81 2.50
2050 3095 4.588951 CCTGTATCCATGTAACTGAGGCTA 59.411 45.833 0.00 0.00 0.00 3.93
2052 3097 6.239714 CCTGTATCCATGTAACTGAGGCTAAT 60.240 42.308 0.00 0.00 0.00 1.73
2053 3098 7.136822 TGTATCCATGTAACTGAGGCTAATT 57.863 36.000 0.00 0.00 0.00 1.40
2054 3099 7.573710 TGTATCCATGTAACTGAGGCTAATTT 58.426 34.615 0.00 0.00 0.00 1.82
2056 3101 7.961326 ATCCATGTAACTGAGGCTAATTTTT 57.039 32.000 0.00 0.00 0.00 1.94
2116 3162 4.041938 TCCTTATTTCTACGTTGTTGGGGT 59.958 41.667 0.00 0.00 0.00 4.95
2117 3163 4.155280 CCTTATTTCTACGTTGTTGGGGTG 59.845 45.833 0.00 0.00 0.00 4.61
2158 3204 6.995511 AACCTTGCTATATTAAACTTGCGA 57.004 33.333 0.00 0.00 0.00 5.10
2210 3256 9.481340 TCATGAGTACATCTATTATGCAAACTC 57.519 33.333 0.00 0.00 34.15 3.01
2213 3259 9.665719 TGAGTACATCTATTATGCAAACTCAAA 57.334 29.630 12.34 0.00 35.54 2.69
2245 3291 8.696043 ATTACAAGGCTAGATTATTTGATGCA 57.304 30.769 0.00 0.00 0.00 3.96
2260 3306 4.409718 TGATGCAAATATTTGGCATGCT 57.590 36.364 27.69 14.90 38.57 3.79
2353 3400 9.087424 GAATTTTATAGGGTCAAAAACAGCATC 57.913 33.333 0.00 0.00 0.00 3.91
2373 3420 5.047377 GCATCAAGAGGATACAAACCCAAAA 60.047 40.000 0.00 0.00 41.41 2.44
2386 3433 2.665165 ACCCAAAAAGCACACATCTGA 58.335 42.857 0.00 0.00 0.00 3.27
2387 3434 3.233507 ACCCAAAAAGCACACATCTGAT 58.766 40.909 0.00 0.00 0.00 2.90
2417 3464 7.268199 CATAATTAGGATGCACACAGTCAAT 57.732 36.000 0.00 0.00 0.00 2.57
2418 3465 8.382030 CATAATTAGGATGCACACAGTCAATA 57.618 34.615 0.00 0.00 0.00 1.90
2419 3466 8.839343 CATAATTAGGATGCACACAGTCAATAA 58.161 33.333 0.00 0.00 0.00 1.40
2420 3467 6.932356 ATTAGGATGCACACAGTCAATAAG 57.068 37.500 0.00 0.00 0.00 1.73
2421 3468 4.292186 AGGATGCACACAGTCAATAAGT 57.708 40.909 0.00 0.00 0.00 2.24
2422 3469 4.005650 AGGATGCACACAGTCAATAAGTG 58.994 43.478 0.00 0.00 39.12 3.16
2423 3470 3.753272 GGATGCACACAGTCAATAAGTGT 59.247 43.478 0.00 0.00 46.54 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.640826 AGGTTCCAAATCCTTACGGTGA 59.359 45.455 0.00 0.00 0.00 4.02
1 2 3.067684 AGGTTCCAAATCCTTACGGTG 57.932 47.619 0.00 0.00 0.00 4.94
2 3 3.801307 AAGGTTCCAAATCCTTACGGT 57.199 42.857 0.00 0.00 41.55 4.83
3 4 5.433526 TGATAAGGTTCCAAATCCTTACGG 58.566 41.667 5.92 0.00 45.28 4.02
4 5 6.995511 TTGATAAGGTTCCAAATCCTTACG 57.004 37.500 5.92 0.00 45.28 3.18
5 6 9.419297 GTTTTTGATAAGGTTCCAAATCCTTAC 57.581 33.333 5.92 2.67 45.28 2.34
6 7 9.374711 AGTTTTTGATAAGGTTCCAAATCCTTA 57.625 29.630 6.20 6.20 46.11 2.69
7 8 8.150296 CAGTTTTTGATAAGGTTCCAAATCCTT 58.850 33.333 0.00 0.00 44.81 3.36
8 9 7.256296 CCAGTTTTTGATAAGGTTCCAAATCCT 60.256 37.037 0.00 0.00 35.34 3.24
9 10 6.873605 CCAGTTTTTGATAAGGTTCCAAATCC 59.126 38.462 0.00 0.00 30.98 3.01
10 11 6.368791 GCCAGTTTTTGATAAGGTTCCAAATC 59.631 38.462 0.00 0.00 30.98 2.17
11 12 6.043127 AGCCAGTTTTTGATAAGGTTCCAAAT 59.957 34.615 0.00 0.00 30.98 2.32
12 13 5.365314 AGCCAGTTTTTGATAAGGTTCCAAA 59.635 36.000 0.00 0.00 0.00 3.28
13 14 4.898861 AGCCAGTTTTTGATAAGGTTCCAA 59.101 37.500 0.00 0.00 0.00 3.53
14 15 4.479158 AGCCAGTTTTTGATAAGGTTCCA 58.521 39.130 0.00 0.00 0.00 3.53
15 16 4.379499 CGAGCCAGTTTTTGATAAGGTTCC 60.379 45.833 0.00 0.00 0.00 3.62
16 17 4.379499 CCGAGCCAGTTTTTGATAAGGTTC 60.379 45.833 0.00 0.00 0.00 3.62
17 18 3.506067 CCGAGCCAGTTTTTGATAAGGTT 59.494 43.478 0.00 0.00 0.00 3.50
18 19 3.081804 CCGAGCCAGTTTTTGATAAGGT 58.918 45.455 0.00 0.00 0.00 3.50
19 20 3.081804 ACCGAGCCAGTTTTTGATAAGG 58.918 45.455 0.00 0.00 0.00 2.69
20 21 4.003648 AGACCGAGCCAGTTTTTGATAAG 58.996 43.478 0.00 0.00 0.00 1.73
21 22 4.015872 AGACCGAGCCAGTTTTTGATAA 57.984 40.909 0.00 0.00 0.00 1.75
22 23 3.695830 AGACCGAGCCAGTTTTTGATA 57.304 42.857 0.00 0.00 0.00 2.15
23 24 2.568623 AGACCGAGCCAGTTTTTGAT 57.431 45.000 0.00 0.00 0.00 2.57
24 25 2.218603 GAAGACCGAGCCAGTTTTTGA 58.781 47.619 0.00 0.00 0.00 2.69
25 26 1.946768 TGAAGACCGAGCCAGTTTTTG 59.053 47.619 0.00 0.00 0.00 2.44
26 27 2.341846 TGAAGACCGAGCCAGTTTTT 57.658 45.000 0.00 0.00 0.00 1.94
27 28 2.154462 CATGAAGACCGAGCCAGTTTT 58.846 47.619 0.00 0.00 0.00 2.43
28 29 1.072331 ACATGAAGACCGAGCCAGTTT 59.928 47.619 0.00 0.00 0.00 2.66
29 30 0.687354 ACATGAAGACCGAGCCAGTT 59.313 50.000 0.00 0.00 0.00 3.16
30 31 0.036952 CACATGAAGACCGAGCCAGT 60.037 55.000 0.00 0.00 0.00 4.00
31 32 0.247460 TCACATGAAGACCGAGCCAG 59.753 55.000 0.00 0.00 0.00 4.85
32 33 0.904649 ATCACATGAAGACCGAGCCA 59.095 50.000 0.00 0.00 0.00 4.75
33 34 1.667724 CAATCACATGAAGACCGAGCC 59.332 52.381 0.00 0.00 0.00 4.70
34 35 2.349886 GTCAATCACATGAAGACCGAGC 59.650 50.000 0.00 0.00 31.28 5.03
35 36 3.369147 GTGTCAATCACATGAAGACCGAG 59.631 47.826 0.00 0.00 45.51 4.63
36 37 3.325870 GTGTCAATCACATGAAGACCGA 58.674 45.455 0.00 0.00 45.51 4.69
37 38 2.092681 CGTGTCAATCACATGAAGACCG 59.907 50.000 0.00 11.60 43.96 4.79
38 39 2.416547 CCGTGTCAATCACATGAAGACC 59.583 50.000 0.00 6.10 43.96 3.85
39 40 2.159653 GCCGTGTCAATCACATGAAGAC 60.160 50.000 0.00 9.63 43.96 3.01
40 41 2.076100 GCCGTGTCAATCACATGAAGA 58.924 47.619 0.00 0.00 43.96 2.87
41 42 1.805943 TGCCGTGTCAATCACATGAAG 59.194 47.619 0.00 0.00 43.96 3.02
42 43 1.889545 TGCCGTGTCAATCACATGAA 58.110 45.000 0.00 0.00 43.96 2.57
43 44 1.535028 GTTGCCGTGTCAATCACATGA 59.465 47.619 0.00 0.00 43.96 3.07
44 45 1.536766 AGTTGCCGTGTCAATCACATG 59.463 47.619 0.00 0.00 46.44 3.21
45 46 1.896220 AGTTGCCGTGTCAATCACAT 58.104 45.000 0.00 0.00 46.44 3.21
46 47 1.333308 CAAGTTGCCGTGTCAATCACA 59.667 47.619 0.00 0.00 46.44 3.58
47 48 1.334960 CCAAGTTGCCGTGTCAATCAC 60.335 52.381 0.00 0.00 43.03 3.06
48 49 0.950836 CCAAGTTGCCGTGTCAATCA 59.049 50.000 0.00 0.00 0.00 2.57
49 50 0.240945 CCCAAGTTGCCGTGTCAATC 59.759 55.000 0.00 0.00 0.00 2.67
50 51 1.178534 CCCCAAGTTGCCGTGTCAAT 61.179 55.000 0.00 0.00 0.00 2.57
51 52 1.826054 CCCCAAGTTGCCGTGTCAA 60.826 57.895 0.00 0.00 0.00 3.18
52 53 2.203280 CCCCAAGTTGCCGTGTCA 60.203 61.111 0.00 0.00 0.00 3.58
53 54 1.527380 TTCCCCAAGTTGCCGTGTC 60.527 57.895 0.00 0.00 0.00 3.67
54 55 1.826487 GTTCCCCAAGTTGCCGTGT 60.826 57.895 0.00 0.00 0.00 4.49
55 56 2.561037 GGTTCCCCAAGTTGCCGTG 61.561 63.158 0.00 0.00 0.00 4.94
56 57 2.203437 GGTTCCCCAAGTTGCCGT 60.203 61.111 0.00 0.00 0.00 5.68
57 58 1.530655 AAGGTTCCCCAAGTTGCCG 60.531 57.895 0.00 0.00 0.00 5.69
58 59 2.049435 CAAGGTTCCCCAAGTTGCC 58.951 57.895 0.00 0.00 0.00 4.52
59 60 1.367471 GCAAGGTTCCCCAAGTTGC 59.633 57.895 0.00 0.00 37.00 4.17
60 61 0.389025 GTGCAAGGTTCCCCAAGTTG 59.611 55.000 0.00 0.00 0.00 3.16
61 62 0.261696 AGTGCAAGGTTCCCCAAGTT 59.738 50.000 0.00 0.00 0.00 2.66
62 63 0.178990 GAGTGCAAGGTTCCCCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
63 64 0.178992 TGAGTGCAAGGTTCCCCAAG 60.179 55.000 0.00 0.00 0.00 3.61
64 65 0.467290 GTGAGTGCAAGGTTCCCCAA 60.467 55.000 0.00 0.00 0.00 4.12
65 66 1.150536 GTGAGTGCAAGGTTCCCCA 59.849 57.895 0.00 0.00 0.00 4.96
66 67 0.606673 GAGTGAGTGCAAGGTTCCCC 60.607 60.000 0.00 0.00 0.00 4.81
67 68 0.398318 AGAGTGAGTGCAAGGTTCCC 59.602 55.000 0.00 0.00 0.00 3.97
68 69 1.802069 GAGAGTGAGTGCAAGGTTCC 58.198 55.000 0.00 0.00 0.00 3.62
69 70 1.423395 CGAGAGTGAGTGCAAGGTTC 58.577 55.000 0.00 0.00 0.00 3.62
70 71 0.601311 GCGAGAGTGAGTGCAAGGTT 60.601 55.000 0.00 0.00 0.00 3.50
71 72 1.005630 GCGAGAGTGAGTGCAAGGT 60.006 57.895 0.00 0.00 0.00 3.50
72 73 0.390866 ATGCGAGAGTGAGTGCAAGG 60.391 55.000 0.00 0.00 41.22 3.61
73 74 1.128136 CAATGCGAGAGTGAGTGCAAG 59.872 52.381 0.00 0.00 41.22 4.01
74 75 1.150827 CAATGCGAGAGTGAGTGCAA 58.849 50.000 0.00 0.00 41.22 4.08
75 76 0.671472 CCAATGCGAGAGTGAGTGCA 60.671 55.000 0.00 0.00 42.22 4.57
76 77 0.671781 ACCAATGCGAGAGTGAGTGC 60.672 55.000 0.00 0.00 0.00 4.40
77 78 1.073964 CACCAATGCGAGAGTGAGTG 58.926 55.000 0.00 0.00 31.79 3.51
78 79 0.036952 CCACCAATGCGAGAGTGAGT 60.037 55.000 0.00 0.00 31.79 3.41
79 80 0.247460 TCCACCAATGCGAGAGTGAG 59.753 55.000 0.00 0.00 31.79 3.51
80 81 0.247460 CTCCACCAATGCGAGAGTGA 59.753 55.000 0.00 0.00 31.79 3.41
81 82 0.247460 TCTCCACCAATGCGAGAGTG 59.753 55.000 0.00 0.00 32.01 3.51
82 83 0.976641 TTCTCCACCAATGCGAGAGT 59.023 50.000 0.00 0.00 35.15 3.24
83 84 1.734465 GTTTCTCCACCAATGCGAGAG 59.266 52.381 0.00 0.00 35.15 3.20
84 85 1.071542 TGTTTCTCCACCAATGCGAGA 59.928 47.619 0.00 0.00 33.13 4.04
85 86 1.522668 TGTTTCTCCACCAATGCGAG 58.477 50.000 0.00 0.00 0.00 5.03
86 87 1.811965 CATGTTTCTCCACCAATGCGA 59.188 47.619 0.00 0.00 0.00 5.10
87 88 1.541147 ACATGTTTCTCCACCAATGCG 59.459 47.619 0.00 0.00 0.00 4.73
88 89 2.094545 GGACATGTTTCTCCACCAATGC 60.095 50.000 0.00 0.00 0.00 3.56
89 90 2.162208 CGGACATGTTTCTCCACCAATG 59.838 50.000 0.00 0.00 0.00 2.82
90 91 2.436417 CGGACATGTTTCTCCACCAAT 58.564 47.619 0.00 0.00 0.00 3.16
91 92 1.544537 CCGGACATGTTTCTCCACCAA 60.545 52.381 0.00 0.00 0.00 3.67
92 93 0.036164 CCGGACATGTTTCTCCACCA 59.964 55.000 0.00 0.00 0.00 4.17
93 94 0.323629 TCCGGACATGTTTCTCCACC 59.676 55.000 0.00 0.00 0.00 4.61
94 95 2.076863 CTTCCGGACATGTTTCTCCAC 58.923 52.381 1.83 0.00 0.00 4.02
95 96 1.610624 GCTTCCGGACATGTTTCTCCA 60.611 52.381 1.83 0.00 0.00 3.86
96 97 1.087501 GCTTCCGGACATGTTTCTCC 58.912 55.000 1.83 0.00 0.00 3.71
97 98 1.808411 TGCTTCCGGACATGTTTCTC 58.192 50.000 1.83 0.00 0.00 2.87
98 99 1.880027 GTTGCTTCCGGACATGTTTCT 59.120 47.619 1.83 0.00 0.00 2.52
99 100 1.606668 TGTTGCTTCCGGACATGTTTC 59.393 47.619 1.83 0.00 0.00 2.78
100 101 1.686355 TGTTGCTTCCGGACATGTTT 58.314 45.000 1.83 0.00 0.00 2.83
101 102 1.812571 GATGTTGCTTCCGGACATGTT 59.187 47.619 1.83 0.00 34.38 2.71
102 103 1.453155 GATGTTGCTTCCGGACATGT 58.547 50.000 1.83 0.00 34.38 3.21
103 104 0.734889 GGATGTTGCTTCCGGACATG 59.265 55.000 1.83 0.00 34.38 3.21
104 105 0.394352 GGGATGTTGCTTCCGGACAT 60.394 55.000 1.83 4.10 36.76 3.06
105 106 1.002624 GGGATGTTGCTTCCGGACA 60.003 57.895 1.83 0.00 33.82 4.02
106 107 1.749258 GGGGATGTTGCTTCCGGAC 60.749 63.158 1.83 0.00 33.82 4.79
107 108 1.784301 TTGGGGATGTTGCTTCCGGA 61.784 55.000 0.00 0.00 33.82 5.14
108 109 0.684153 ATTGGGGATGTTGCTTCCGG 60.684 55.000 0.00 0.00 33.82 5.14
109 110 1.949525 CTATTGGGGATGTTGCTTCCG 59.050 52.381 0.00 0.00 33.82 4.30
110 111 3.297134 TCTATTGGGGATGTTGCTTCC 57.703 47.619 0.00 0.00 0.00 3.46
111 112 4.098501 CCTTTCTATTGGGGATGTTGCTTC 59.901 45.833 0.00 0.00 0.00 3.86
112 113 4.026052 CCTTTCTATTGGGGATGTTGCTT 58.974 43.478 0.00 0.00 0.00 3.91
113 114 3.635591 CCTTTCTATTGGGGATGTTGCT 58.364 45.455 0.00 0.00 0.00 3.91
114 115 2.101415 GCCTTTCTATTGGGGATGTTGC 59.899 50.000 0.00 0.00 0.00 4.17
115 116 2.695147 GGCCTTTCTATTGGGGATGTTG 59.305 50.000 0.00 0.00 0.00 3.33
116 117 2.314549 TGGCCTTTCTATTGGGGATGTT 59.685 45.455 3.32 0.00 0.00 2.71
117 118 1.929494 TGGCCTTTCTATTGGGGATGT 59.071 47.619 3.32 0.00 0.00 3.06
118 119 2.754012 TGGCCTTTCTATTGGGGATG 57.246 50.000 3.32 0.00 0.00 3.51
119 120 2.158264 CCATGGCCTTTCTATTGGGGAT 60.158 50.000 3.32 0.00 0.00 3.85
120 121 1.217689 CCATGGCCTTTCTATTGGGGA 59.782 52.381 3.32 0.00 0.00 4.81
121 122 1.708341 CCATGGCCTTTCTATTGGGG 58.292 55.000 3.32 0.00 0.00 4.96
122 123 1.043022 GCCATGGCCTTTCTATTGGG 58.957 55.000 27.24 0.00 34.56 4.12
123 124 1.779221 TGCCATGGCCTTTCTATTGG 58.221 50.000 33.44 0.00 41.09 3.16
124 125 2.298163 GGATGCCATGGCCTTTCTATTG 59.702 50.000 33.44 0.00 41.09 1.90
125 126 2.601905 GGATGCCATGGCCTTTCTATT 58.398 47.619 33.44 8.13 41.09 1.73
126 127 1.203100 GGGATGCCATGGCCTTTCTAT 60.203 52.381 33.44 19.11 41.09 1.98
127 128 0.185901 GGGATGCCATGGCCTTTCTA 59.814 55.000 33.44 14.74 41.09 2.10
128 129 1.075748 GGGATGCCATGGCCTTTCT 60.076 57.895 33.44 13.04 41.09 2.52
129 130 1.075748 AGGGATGCCATGGCCTTTC 60.076 57.895 33.44 24.83 41.09 2.62
130 131 1.075748 GAGGGATGCCATGGCCTTT 60.076 57.895 33.44 18.47 41.09 3.11
131 132 2.318966 TGAGGGATGCCATGGCCTT 61.319 57.895 33.44 21.18 41.09 4.35
132 133 2.697263 TGAGGGATGCCATGGCCT 60.697 61.111 33.44 24.85 41.09 5.19
133 134 2.520260 GTGAGGGATGCCATGGCC 60.520 66.667 33.44 18.99 41.09 5.36
134 135 2.520260 GGTGAGGGATGCCATGGC 60.520 66.667 30.54 30.54 42.35 4.40
135 136 1.540166 ATGGTGAGGGATGCCATGG 59.460 57.895 7.63 7.63 41.05 3.66
137 138 1.152610 GCATGGTGAGGGATGCCAT 60.153 57.895 5.86 0.00 43.14 4.40
138 139 0.987613 TAGCATGGTGAGGGATGCCA 60.988 55.000 7.89 0.00 45.13 4.92
139 140 0.250640 CTAGCATGGTGAGGGATGCC 60.251 60.000 7.89 0.00 45.13 4.40
140 141 0.471617 ACTAGCATGGTGAGGGATGC 59.528 55.000 7.89 0.00 44.49 3.91
141 142 1.269988 CGACTAGCATGGTGAGGGATG 60.270 57.143 7.89 0.00 0.00 3.51
142 143 1.043816 CGACTAGCATGGTGAGGGAT 58.956 55.000 7.89 0.00 0.00 3.85
143 144 1.043116 CCGACTAGCATGGTGAGGGA 61.043 60.000 7.89 0.00 0.00 4.20
144 145 1.443407 CCGACTAGCATGGTGAGGG 59.557 63.158 7.89 0.00 0.00 4.30
145 146 1.227380 GCCGACTAGCATGGTGAGG 60.227 63.158 7.89 6.54 0.00 3.86
146 147 0.529337 CAGCCGACTAGCATGGTGAG 60.529 60.000 7.89 3.93 34.23 3.51
147 148 1.517361 CAGCCGACTAGCATGGTGA 59.483 57.895 7.89 0.00 34.23 4.02
148 149 1.522355 CCAGCCGACTAGCATGGTG 60.522 63.158 7.89 0.11 34.23 4.17
149 150 1.685765 TCCAGCCGACTAGCATGGT 60.686 57.895 1.62 1.62 34.56 3.55
150 151 1.227380 GTCCAGCCGACTAGCATGG 60.227 63.158 0.00 0.00 38.57 3.66
151 152 1.227380 GGTCCAGCCGACTAGCATG 60.227 63.158 1.90 0.00 41.64 4.06
152 153 1.050988 ATGGTCCAGCCGACTAGCAT 61.051 55.000 0.00 0.00 41.64 3.79
153 154 1.676678 GATGGTCCAGCCGACTAGCA 61.677 60.000 0.00 0.00 38.19 3.49
154 155 1.068250 GATGGTCCAGCCGACTAGC 59.932 63.158 0.00 0.00 41.64 3.42
155 156 0.387202 CAGATGGTCCAGCCGACTAG 59.613 60.000 2.75 0.00 41.64 2.57
156 157 1.043116 CCAGATGGTCCAGCCGACTA 61.043 60.000 2.75 0.00 41.64 2.59
157 158 2.362369 CCAGATGGTCCAGCCGACT 61.362 63.158 2.75 0.00 41.64 4.18
158 159 1.899437 TTCCAGATGGTCCAGCCGAC 61.899 60.000 2.75 0.00 41.21 4.79
159 160 1.198094 TTTCCAGATGGTCCAGCCGA 61.198 55.000 2.75 0.00 41.21 5.54
160 161 0.745845 CTTTCCAGATGGTCCAGCCG 60.746 60.000 2.75 0.00 41.21 5.52
161 162 0.620556 TCTTTCCAGATGGTCCAGCC 59.379 55.000 2.75 0.00 36.34 4.85
162 163 1.556911 TCTCTTTCCAGATGGTCCAGC 59.443 52.381 0.00 0.00 36.34 4.85
163 164 3.102972 TCTCTCTTTCCAGATGGTCCAG 58.897 50.000 0.00 0.00 36.34 3.86
164 165 3.190383 TCTCTCTTTCCAGATGGTCCA 57.810 47.619 0.00 0.00 36.34 4.02
165 166 4.559862 TTTCTCTCTTTCCAGATGGTCC 57.440 45.455 0.00 0.00 36.34 4.46
166 167 4.335037 GCATTTCTCTCTTTCCAGATGGTC 59.665 45.833 0.00 0.00 36.34 4.02
167 168 4.018597 AGCATTTCTCTCTTTCCAGATGGT 60.019 41.667 0.00 0.00 36.34 3.55
168 169 4.525024 AGCATTTCTCTCTTTCCAGATGG 58.475 43.478 0.00 0.00 0.00 3.51
169 170 5.183969 TGAGCATTTCTCTCTTTCCAGATG 58.816 41.667 0.00 0.00 42.38 2.90
170 171 5.432680 TGAGCATTTCTCTCTTTCCAGAT 57.567 39.130 0.00 0.00 42.38 2.90
171 172 4.897509 TGAGCATTTCTCTCTTTCCAGA 57.102 40.909 0.00 0.00 42.38 3.86
172 173 4.201930 GCATGAGCATTTCTCTCTTTCCAG 60.202 45.833 0.00 0.00 42.38 3.86
173 174 3.693085 GCATGAGCATTTCTCTCTTTCCA 59.307 43.478 0.00 0.00 42.38 3.53
174 175 4.290104 GCATGAGCATTTCTCTCTTTCC 57.710 45.455 0.00 0.00 42.38 3.13
188 189 2.728690 TTGTGTTGGAATGCATGAGC 57.271 45.000 0.00 0.00 42.57 4.26
189 190 4.811908 TGATTTGTGTTGGAATGCATGAG 58.188 39.130 0.00 0.00 0.00 2.90
190 191 4.868314 TGATTTGTGTTGGAATGCATGA 57.132 36.364 0.00 0.00 0.00 3.07
191 192 4.992319 AGTTGATTTGTGTTGGAATGCATG 59.008 37.500 0.00 0.00 0.00 4.06
192 193 5.217978 AGTTGATTTGTGTTGGAATGCAT 57.782 34.783 0.00 0.00 0.00 3.96
193 194 4.501229 GGAGTTGATTTGTGTTGGAATGCA 60.501 41.667 0.00 0.00 0.00 3.96
194 195 3.989817 GGAGTTGATTTGTGTTGGAATGC 59.010 43.478 0.00 0.00 0.00 3.56
195 196 4.229096 CGGAGTTGATTTGTGTTGGAATG 58.771 43.478 0.00 0.00 0.00 2.67
196 197 3.255642 CCGGAGTTGATTTGTGTTGGAAT 59.744 43.478 0.00 0.00 0.00 3.01
197 198 2.621055 CCGGAGTTGATTTGTGTTGGAA 59.379 45.455 0.00 0.00 0.00 3.53
198 199 2.226330 CCGGAGTTGATTTGTGTTGGA 58.774 47.619 0.00 0.00 0.00 3.53
199 200 1.335872 GCCGGAGTTGATTTGTGTTGG 60.336 52.381 5.05 0.00 0.00 3.77
200 201 1.336440 TGCCGGAGTTGATTTGTGTTG 59.664 47.619 5.05 0.00 0.00 3.33
201 202 1.336755 GTGCCGGAGTTGATTTGTGTT 59.663 47.619 5.05 0.00 0.00 3.32
202 203 0.951558 GTGCCGGAGTTGATTTGTGT 59.048 50.000 5.05 0.00 0.00 3.72
203 204 0.240945 GGTGCCGGAGTTGATTTGTG 59.759 55.000 5.05 0.00 0.00 3.33
204 205 1.234615 CGGTGCCGGAGTTGATTTGT 61.235 55.000 5.05 0.00 35.56 2.83
205 206 1.501741 CGGTGCCGGAGTTGATTTG 59.498 57.895 5.05 0.00 35.56 2.32
206 207 3.981308 CGGTGCCGGAGTTGATTT 58.019 55.556 5.05 0.00 35.56 2.17
216 217 1.811266 CTGAAGATGACCGGTGCCG 60.811 63.158 14.63 3.25 39.44 5.69
217 218 0.535335 TACTGAAGATGACCGGTGCC 59.465 55.000 14.63 0.00 0.00 5.01
218 219 2.159099 TGATACTGAAGATGACCGGTGC 60.159 50.000 14.63 4.13 0.00 5.01
219 220 3.801114 TGATACTGAAGATGACCGGTG 57.199 47.619 14.63 0.00 0.00 4.94
220 221 3.960755 TGATGATACTGAAGATGACCGGT 59.039 43.478 6.92 6.92 0.00 5.28
221 222 4.590850 TGATGATACTGAAGATGACCGG 57.409 45.455 0.00 0.00 0.00 5.28
222 223 6.018425 CCTTTTGATGATACTGAAGATGACCG 60.018 42.308 0.00 0.00 0.00 4.79
223 224 6.261826 CCCTTTTGATGATACTGAAGATGACC 59.738 42.308 0.00 0.00 0.00 4.02
224 225 7.050377 TCCCTTTTGATGATACTGAAGATGAC 58.950 38.462 0.00 0.00 0.00 3.06
225 226 7.199167 TCCCTTTTGATGATACTGAAGATGA 57.801 36.000 0.00 0.00 0.00 2.92
226 227 6.485984 CCTCCCTTTTGATGATACTGAAGATG 59.514 42.308 0.00 0.00 0.00 2.90
227 228 6.599445 CCTCCCTTTTGATGATACTGAAGAT 58.401 40.000 0.00 0.00 0.00 2.40
228 229 5.630069 GCCTCCCTTTTGATGATACTGAAGA 60.630 44.000 0.00 0.00 0.00 2.87
229 230 4.578105 GCCTCCCTTTTGATGATACTGAAG 59.422 45.833 0.00 0.00 0.00 3.02
230 231 4.228210 AGCCTCCCTTTTGATGATACTGAA 59.772 41.667 0.00 0.00 0.00 3.02
231 232 3.782523 AGCCTCCCTTTTGATGATACTGA 59.217 43.478 0.00 0.00 0.00 3.41
232 233 4.162040 AGCCTCCCTTTTGATGATACTG 57.838 45.455 0.00 0.00 0.00 2.74
233 234 5.071115 GTCTAGCCTCCCTTTTGATGATACT 59.929 44.000 0.00 0.00 0.00 2.12
234 235 5.071115 AGTCTAGCCTCCCTTTTGATGATAC 59.929 44.000 0.00 0.00 0.00 2.24
235 236 5.219739 AGTCTAGCCTCCCTTTTGATGATA 58.780 41.667 0.00 0.00 0.00 2.15
236 237 4.043596 AGTCTAGCCTCCCTTTTGATGAT 58.956 43.478 0.00 0.00 0.00 2.45
237 238 3.454858 AGTCTAGCCTCCCTTTTGATGA 58.545 45.455 0.00 0.00 0.00 2.92
238 239 3.922171 AGTCTAGCCTCCCTTTTGATG 57.078 47.619 0.00 0.00 0.00 3.07
239 240 3.118592 CGAAGTCTAGCCTCCCTTTTGAT 60.119 47.826 0.00 0.00 0.00 2.57
240 241 2.233922 CGAAGTCTAGCCTCCCTTTTGA 59.766 50.000 0.00 0.00 0.00 2.69
241 242 2.622436 CGAAGTCTAGCCTCCCTTTTG 58.378 52.381 0.00 0.00 0.00 2.44
242 243 1.555533 CCGAAGTCTAGCCTCCCTTTT 59.444 52.381 0.00 0.00 0.00 2.27
243 244 1.196012 CCGAAGTCTAGCCTCCCTTT 58.804 55.000 0.00 0.00 0.00 3.11
244 245 0.688087 CCCGAAGTCTAGCCTCCCTT 60.688 60.000 0.00 0.00 0.00 3.95
245 246 1.075896 CCCGAAGTCTAGCCTCCCT 60.076 63.158 0.00 0.00 0.00 4.20
246 247 0.976590 AACCCGAAGTCTAGCCTCCC 60.977 60.000 0.00 0.00 0.00 4.30
247 248 1.772836 TAACCCGAAGTCTAGCCTCC 58.227 55.000 0.00 0.00 0.00 4.30
248 249 2.030981 CGATAACCCGAAGTCTAGCCTC 60.031 54.545 0.00 0.00 0.00 4.70
249 250 1.955080 CGATAACCCGAAGTCTAGCCT 59.045 52.381 0.00 0.00 0.00 4.58
250 251 1.602416 GCGATAACCCGAAGTCTAGCC 60.602 57.143 0.00 0.00 0.00 3.93
251 252 1.768510 GCGATAACCCGAAGTCTAGC 58.231 55.000 0.00 0.00 0.00 3.42
252 253 1.334779 CCGCGATAACCCGAAGTCTAG 60.335 57.143 8.23 0.00 0.00 2.43
253 254 0.664761 CCGCGATAACCCGAAGTCTA 59.335 55.000 8.23 0.00 0.00 2.59
254 255 1.436336 CCGCGATAACCCGAAGTCT 59.564 57.895 8.23 0.00 0.00 3.24
255 256 1.590792 CCCGCGATAACCCGAAGTC 60.591 63.158 8.23 0.00 0.00 3.01
256 257 2.353610 ACCCGCGATAACCCGAAGT 61.354 57.895 8.23 0.00 0.00 3.01
257 258 1.881252 CACCCGCGATAACCCGAAG 60.881 63.158 8.23 0.00 0.00 3.79
258 259 2.184836 CACCCGCGATAACCCGAA 59.815 61.111 8.23 0.00 0.00 4.30
259 260 4.517815 GCACCCGCGATAACCCGA 62.518 66.667 8.23 0.00 0.00 5.14
279 280 6.440965 TCCCGGTATTATGTTTCCCAATTTTT 59.559 34.615 0.00 0.00 0.00 1.94
280 281 5.958987 TCCCGGTATTATGTTTCCCAATTTT 59.041 36.000 0.00 0.00 0.00 1.82
281 282 5.520751 TCCCGGTATTATGTTTCCCAATTT 58.479 37.500 0.00 0.00 0.00 1.82
282 283 5.103855 TCTCCCGGTATTATGTTTCCCAATT 60.104 40.000 0.00 0.00 0.00 2.32
283 284 4.414182 TCTCCCGGTATTATGTTTCCCAAT 59.586 41.667 0.00 0.00 0.00 3.16
284 285 3.781407 TCTCCCGGTATTATGTTTCCCAA 59.219 43.478 0.00 0.00 0.00 4.12
285 286 3.386063 TCTCCCGGTATTATGTTTCCCA 58.614 45.455 0.00 0.00 0.00 4.37
286 287 3.390311 ACTCTCCCGGTATTATGTTTCCC 59.610 47.826 0.00 0.00 0.00 3.97
287 288 4.684484 ACTCTCCCGGTATTATGTTTCC 57.316 45.455 0.00 0.00 0.00 3.13
288 289 7.384387 GTCATTACTCTCCCGGTATTATGTTTC 59.616 40.741 0.00 0.00 0.00 2.78
289 290 7.070821 AGTCATTACTCTCCCGGTATTATGTTT 59.929 37.037 0.00 0.00 0.00 2.83
290 291 6.553852 AGTCATTACTCTCCCGGTATTATGTT 59.446 38.462 0.00 0.00 0.00 2.71
291 292 6.075984 AGTCATTACTCTCCCGGTATTATGT 58.924 40.000 0.00 0.00 0.00 2.29
292 293 6.591750 AGTCATTACTCTCCCGGTATTATG 57.408 41.667 0.00 0.00 0.00 1.90
293 294 7.613551 AAAGTCATTACTCTCCCGGTATTAT 57.386 36.000 0.00 0.00 33.75 1.28
294 295 7.427989 AAAAGTCATTACTCTCCCGGTATTA 57.572 36.000 0.00 0.00 33.75 0.98
295 296 5.952347 AAAGTCATTACTCTCCCGGTATT 57.048 39.130 0.00 0.00 33.75 1.89
296 297 5.952347 AAAAGTCATTACTCTCCCGGTAT 57.048 39.130 0.00 0.00 33.75 2.73
297 298 5.482878 AGAAAAAGTCATTACTCTCCCGGTA 59.517 40.000 0.00 0.00 33.75 4.02
298 299 4.286291 AGAAAAAGTCATTACTCTCCCGGT 59.714 41.667 0.00 0.00 33.75 5.28
299 300 4.833390 AGAAAAAGTCATTACTCTCCCGG 58.167 43.478 0.00 0.00 33.75 5.73
300 301 9.765795 AATATAGAAAAAGTCATTACTCTCCCG 57.234 33.333 0.00 0.00 33.75 5.14
309 310 9.533831 ACCACCTCAAATATAGAAAAAGTCATT 57.466 29.630 0.00 0.00 0.00 2.57
310 311 8.960591 CACCACCTCAAATATAGAAAAAGTCAT 58.039 33.333 0.00 0.00 0.00 3.06
311 312 7.942341 ACACCACCTCAAATATAGAAAAAGTCA 59.058 33.333 0.00 0.00 0.00 3.41
312 313 8.237267 CACACCACCTCAAATATAGAAAAAGTC 58.763 37.037 0.00 0.00 0.00 3.01
313 314 7.724061 ACACACCACCTCAAATATAGAAAAAGT 59.276 33.333 0.00 0.00 0.00 2.66
314 315 8.110860 ACACACCACCTCAAATATAGAAAAAG 57.889 34.615 0.00 0.00 0.00 2.27
315 316 9.575868 TTACACACCACCTCAAATATAGAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
316 317 9.005777 GTTACACACCACCTCAAATATAGAAAA 57.994 33.333 0.00 0.00 0.00 2.29
317 318 8.158132 TGTTACACACCACCTCAAATATAGAAA 58.842 33.333 0.00 0.00 0.00 2.52
318 319 7.681679 TGTTACACACCACCTCAAATATAGAA 58.318 34.615 0.00 0.00 0.00 2.10
319 320 7.247456 TGTTACACACCACCTCAAATATAGA 57.753 36.000 0.00 0.00 0.00 1.98
320 321 7.915293 TTGTTACACACCACCTCAAATATAG 57.085 36.000 0.00 0.00 0.00 1.31
321 322 8.871629 ATTTGTTACACACCACCTCAAATATA 57.128 30.769 0.00 0.00 34.00 0.86
322 323 7.775053 ATTTGTTACACACCACCTCAAATAT 57.225 32.000 0.00 0.00 34.00 1.28
323 324 7.589958 AATTTGTTACACACCACCTCAAATA 57.410 32.000 0.00 0.00 34.44 1.40
324 325 6.478512 AATTTGTTACACACCACCTCAAAT 57.521 33.333 0.00 0.00 36.18 2.32
325 326 5.923733 AATTTGTTACACACCACCTCAAA 57.076 34.783 0.00 0.00 0.00 2.69
326 327 5.923733 AAATTTGTTACACACCACCTCAA 57.076 34.783 0.00 0.00 0.00 3.02
327 328 5.923733 AAAATTTGTTACACACCACCTCA 57.076 34.783 0.00 0.00 0.00 3.86
328 329 8.357402 AGAATAAAATTTGTTACACACCACCTC 58.643 33.333 0.00 0.00 0.00 3.85
329 330 8.245195 AGAATAAAATTTGTTACACACCACCT 57.755 30.769 0.00 0.00 0.00 4.00
330 331 7.597369 GGAGAATAAAATTTGTTACACACCACC 59.403 37.037 0.00 0.00 0.00 4.61
331 332 8.357402 AGGAGAATAAAATTTGTTACACACCAC 58.643 33.333 0.00 0.00 0.00 4.16
332 333 8.472007 AGGAGAATAAAATTTGTTACACACCA 57.528 30.769 0.00 0.00 0.00 4.17
333 334 9.406828 GAAGGAGAATAAAATTTGTTACACACC 57.593 33.333 0.00 0.00 0.00 4.16
352 353 9.159254 TGCCTCATCTATTAATTAAGAAGGAGA 57.841 33.333 10.97 6.00 32.89 3.71
353 354 9.784531 TTGCCTCATCTATTAATTAAGAAGGAG 57.215 33.333 10.97 10.42 31.83 3.69
356 357 9.890352 GCTTTGCCTCATCTATTAATTAAGAAG 57.110 33.333 3.94 4.35 0.00 2.85
357 358 9.632638 AGCTTTGCCTCATCTATTAATTAAGAA 57.367 29.630 3.94 0.00 0.00 2.52
358 359 9.632638 AAGCTTTGCCTCATCTATTAATTAAGA 57.367 29.630 3.94 0.00 0.00 2.10
362 363 8.302438 GCATAAGCTTTGCCTCATCTATTAATT 58.698 33.333 17.56 0.00 37.91 1.40
363 364 7.361542 CGCATAAGCTTTGCCTCATCTATTAAT 60.362 37.037 20.54 0.00 39.10 1.40
364 365 6.073058 CGCATAAGCTTTGCCTCATCTATTAA 60.073 38.462 20.54 0.00 39.10 1.40
365 366 5.409520 CGCATAAGCTTTGCCTCATCTATTA 59.590 40.000 20.54 0.00 39.10 0.98
366 367 4.214971 CGCATAAGCTTTGCCTCATCTATT 59.785 41.667 20.54 0.00 39.10 1.73
367 368 3.750130 CGCATAAGCTTTGCCTCATCTAT 59.250 43.478 20.54 0.00 39.10 1.98
368 369 3.133691 CGCATAAGCTTTGCCTCATCTA 58.866 45.455 20.54 0.00 39.10 1.98
369 370 1.945394 CGCATAAGCTTTGCCTCATCT 59.055 47.619 20.54 0.00 39.10 2.90
370 371 1.672881 ACGCATAAGCTTTGCCTCATC 59.327 47.619 20.54 1.93 39.10 2.92
371 372 1.672881 GACGCATAAGCTTTGCCTCAT 59.327 47.619 20.54 9.48 39.10 2.90
372 373 1.086696 GACGCATAAGCTTTGCCTCA 58.913 50.000 20.54 0.00 39.10 3.86
373 374 1.063174 CAGACGCATAAGCTTTGCCTC 59.937 52.381 20.54 18.55 39.10 4.70
374 375 1.089920 CAGACGCATAAGCTTTGCCT 58.910 50.000 20.54 13.22 39.10 4.75
375 376 0.804989 ACAGACGCATAAGCTTTGCC 59.195 50.000 20.54 11.99 39.10 4.52
376 377 2.619013 AACAGACGCATAAGCTTTGC 57.381 45.000 18.09 18.09 39.10 3.68
377 378 3.120683 TCGAAACAGACGCATAAGCTTTG 60.121 43.478 3.20 4.23 39.10 2.77
378 379 3.064207 TCGAAACAGACGCATAAGCTTT 58.936 40.909 3.20 0.00 39.10 3.51
379 380 2.683968 TCGAAACAGACGCATAAGCTT 58.316 42.857 3.48 3.48 39.10 3.74
380 381 2.363788 TCGAAACAGACGCATAAGCT 57.636 45.000 0.00 0.00 39.10 3.74
381 382 3.449322 TTTCGAAACAGACGCATAAGC 57.551 42.857 6.47 0.00 37.42 3.09
402 403 1.892209 CCACCCACGCTAGTCTTTTT 58.108 50.000 0.00 0.00 0.00 1.94
403 404 0.605589 GCCACCCACGCTAGTCTTTT 60.606 55.000 0.00 0.00 0.00 2.27
404 405 1.003718 GCCACCCACGCTAGTCTTT 60.004 57.895 0.00 0.00 0.00 2.52
405 406 1.764571 TTGCCACCCACGCTAGTCTT 61.765 55.000 0.00 0.00 0.00 3.01
456 457 2.357034 GACCTCGAAGCCACGCAA 60.357 61.111 0.00 0.00 0.00 4.85
508 509 3.851976 TGTTGTTGTACGGCTTTTTGT 57.148 38.095 0.00 0.00 0.00 2.83
606 610 1.732259 ACACGAGCAAATTTAGGCGAG 59.268 47.619 11.20 7.03 34.54 5.03
1072 1677 0.951558 GCCGTGTTGATGTTGGACTT 59.048 50.000 0.00 0.00 0.00 3.01
1218 1829 1.682684 GAGGCCCTTCTCGGACTGA 60.683 63.158 0.00 0.00 43.41 3.41
1506 2289 3.573598 TCATTGTGCAGCAAAAATACGG 58.426 40.909 0.95 0.00 40.91 4.02
1507 2290 4.143347 GGTTCATTGTGCAGCAAAAATACG 60.143 41.667 0.95 0.00 40.91 3.06
1550 2362 5.858876 AATGGAATATATAGGTGGCACCA 57.141 39.130 36.28 22.90 41.95 4.17
1787 2636 2.223456 TGGAACATGTGAAAAGTGTGCG 60.223 45.455 0.00 0.00 0.00 5.34
1927 2967 7.429630 CGTGTAACAAGATCTACACTCTACATG 59.570 40.741 19.36 12.07 43.72 3.21
1962 3004 2.036733 ACACGCACACCACTACACTAAT 59.963 45.455 0.00 0.00 0.00 1.73
1965 3007 0.529773 CACACGCACACCACTACACT 60.530 55.000 0.00 0.00 0.00 3.55
1966 3008 0.808453 ACACACGCACACCACTACAC 60.808 55.000 0.00 0.00 0.00 2.90
1989 3034 2.863132 TGTATAACACACACCCCACC 57.137 50.000 0.00 0.00 30.04 4.61
2009 3054 4.369182 ACAGGTCGTAAAACAGAACAGAG 58.631 43.478 0.00 0.00 0.00 3.35
2061 3107 9.778741 CCTGTCATAAATCTGGCTAAAACTATA 57.221 33.333 0.00 0.00 0.00 1.31
2097 3143 4.354893 ACACCCCAACAACGTAGAAATA 57.645 40.909 0.00 0.00 0.00 1.40
2116 3162 6.849085 AGGTTATGATGTGCCATAAAAACA 57.151 33.333 0.00 0.00 39.76 2.83
2117 3163 6.035975 GCAAGGTTATGATGTGCCATAAAAAC 59.964 38.462 0.00 0.00 39.76 2.43
2158 3204 0.111253 CCTCTGTGGGCCTCTTTTGT 59.889 55.000 4.53 0.00 0.00 2.83
2245 3291 7.823310 TGTCAACAATTAGCATGCCAAATATTT 59.177 29.630 15.66 8.46 0.00 1.40
2316 3362 8.112822 TGACCCTATAAAATTCATCCTTTGTCA 58.887 33.333 0.00 0.00 0.00 3.58
2325 3371 8.592809 TGCTGTTTTTGACCCTATAAAATTCAT 58.407 29.630 0.00 0.00 0.00 2.57
2336 3382 3.565307 TCTTGATGCTGTTTTTGACCCT 58.435 40.909 0.00 0.00 0.00 4.34
2339 3385 4.836125 TCCTCTTGATGCTGTTTTTGAC 57.164 40.909 0.00 0.00 0.00 3.18
2347 3393 3.629398 GGGTTTGTATCCTCTTGATGCTG 59.371 47.826 0.00 0.00 37.04 4.41
2353 3400 5.221422 TGCTTTTTGGGTTTGTATCCTCTTG 60.221 40.000 0.00 0.00 0.00 3.02
2373 3420 2.027469 TGCAGAGATCAGATGTGTGCTT 60.027 45.455 24.80 0.00 42.32 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.