Multiple sequence alignment - TraesCS1A01G164900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G164900 chr1A 100.000 4591 0 0 1 4591 297875838 297871248 0.000000e+00 8479
1 TraesCS1A01G164900 chr1A 90.502 558 49 4 254 809 547602501 547603056 0.000000e+00 734
2 TraesCS1A01G164900 chr1D 86.510 1705 125 60 805 2448 229882761 229881101 0.000000e+00 1777
3 TraesCS1A01G164900 chr1D 92.566 1103 50 18 2542 3626 229881103 229880015 0.000000e+00 1554
4 TraesCS1A01G164900 chr1B 86.474 1279 81 50 1407 2645 328943405 328942179 0.000000e+00 1319
5 TraesCS1A01G164900 chr1B 87.212 1040 75 31 2721 3725 328939716 328938700 0.000000e+00 1131
6 TraesCS1A01G164900 chr1B 89.560 546 36 9 814 1343 328943986 328943446 0.000000e+00 673
7 TraesCS1A01G164900 chr5A 91.187 556 42 6 253 804 510277946 510277394 0.000000e+00 749
8 TraesCS1A01G164900 chr4A 91.408 547 44 3 257 801 666946142 666946687 0.000000e+00 747
9 TraesCS1A01G164900 chr4A 91.468 293 24 1 4299 4591 368583315 368583606 7.150000e-108 401
10 TraesCS1A01G164900 chr4A 90.536 317 10 13 4221 4536 625188005 625187708 7.150000e-108 401
11 TraesCS1A01G164900 chr4A 92.135 267 8 2 3949 4203 625188255 625187990 9.390000e-97 364
12 TraesCS1A01G164900 chr4A 88.312 231 14 5 3947 4165 368583001 368583230 9.790000e-67 265
13 TraesCS1A01G164900 chr4A 80.696 316 37 14 4273 4575 2708728 2708424 1.660000e-54 224
14 TraesCS1A01G164900 chr7A 91.107 551 46 3 256 804 728289470 728290019 0.000000e+00 743
15 TraesCS1A01G164900 chr2D 91.091 550 46 3 260 807 33335908 33335360 0.000000e+00 741
16 TraesCS1A01G164900 chr6A 91.042 547 46 3 260 804 603562618 603562073 0.000000e+00 736
17 TraesCS1A01G164900 chr6A 85.399 363 36 3 4230 4591 1037609 1037263 1.210000e-95 361
18 TraesCS1A01G164900 chr2A 90.909 550 46 4 261 807 24536495 24537043 0.000000e+00 736
19 TraesCS1A01G164900 chr7D 90.859 547 47 3 260 804 576687751 576687206 0.000000e+00 730
20 TraesCS1A01G164900 chr7B 90.416 553 50 3 261 811 606405902 606405351 0.000000e+00 725
21 TraesCS1A01G164900 chr5B 87.556 225 22 4 3949 4173 707429023 707428805 5.890000e-64 255
22 TraesCS1A01G164900 chr3A 85.635 181 22 2 4269 4448 288452644 288452467 2.180000e-43 187
23 TraesCS1A01G164900 chr6B 81.938 227 15 9 3948 4173 28214070 28214271 7.900000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G164900 chr1A 297871248 297875838 4590 True 8479.0 8479 100.000000 1 4591 1 chr1A.!!$R1 4590
1 TraesCS1A01G164900 chr1A 547602501 547603056 555 False 734.0 734 90.502000 254 809 1 chr1A.!!$F1 555
2 TraesCS1A01G164900 chr1D 229880015 229882761 2746 True 1665.5 1777 89.538000 805 3626 2 chr1D.!!$R1 2821
3 TraesCS1A01G164900 chr1B 328938700 328943986 5286 True 1041.0 1319 87.748667 814 3725 3 chr1B.!!$R1 2911
4 TraesCS1A01G164900 chr5A 510277394 510277946 552 True 749.0 749 91.187000 253 804 1 chr5A.!!$R1 551
5 TraesCS1A01G164900 chr4A 666946142 666946687 545 False 747.0 747 91.408000 257 801 1 chr4A.!!$F1 544
6 TraesCS1A01G164900 chr4A 625187708 625188255 547 True 382.5 401 91.335500 3949 4536 2 chr4A.!!$R2 587
7 TraesCS1A01G164900 chr4A 368583001 368583606 605 False 333.0 401 89.890000 3947 4591 2 chr4A.!!$F2 644
8 TraesCS1A01G164900 chr7A 728289470 728290019 549 False 743.0 743 91.107000 256 804 1 chr7A.!!$F1 548
9 TraesCS1A01G164900 chr2D 33335360 33335908 548 True 741.0 741 91.091000 260 807 1 chr2D.!!$R1 547
10 TraesCS1A01G164900 chr6A 603562073 603562618 545 True 736.0 736 91.042000 260 804 1 chr6A.!!$R2 544
11 TraesCS1A01G164900 chr2A 24536495 24537043 548 False 736.0 736 90.909000 261 807 1 chr2A.!!$F1 546
12 TraesCS1A01G164900 chr7D 576687206 576687751 545 True 730.0 730 90.859000 260 804 1 chr7D.!!$R1 544
13 TraesCS1A01G164900 chr7B 606405351 606405902 551 True 725.0 725 90.416000 261 811 1 chr7B.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 908 0.036952 ACACGAGCTCCACCAGAATG 60.037 55.0 8.47 0.0 0.00 2.67 F
2126 2210 0.106268 TTGCTTGCTGGTTTCAGGGA 60.106 50.0 0.00 0.0 41.19 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2498 0.037326 TTCTCCAGCTGTTGCCGTAG 60.037 55.0 13.81 0.0 40.80 3.51 R
3742 6297 0.039617 TTTGGAAATTGCTCACCGCG 60.040 50.0 0.00 0.0 43.27 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.762381 TGGGACAAAATTTAGAAATACACCTAT 57.238 29.630 0.00 0.00 31.92 2.57
36 37 8.657074 TTAGAAATACACCTATTCGTGAATGG 57.343 34.615 5.37 2.33 37.20 3.16
37 38 6.884832 AGAAATACACCTATTCGTGAATGGA 58.115 36.000 7.44 0.00 37.20 3.41
38 39 6.986817 AGAAATACACCTATTCGTGAATGGAG 59.013 38.462 7.44 7.07 37.20 3.86
39 40 3.543680 ACACCTATTCGTGAATGGAGG 57.456 47.619 7.44 8.32 37.20 4.30
40 41 3.104512 ACACCTATTCGTGAATGGAGGA 58.895 45.455 15.19 0.00 37.20 3.71
41 42 3.517901 ACACCTATTCGTGAATGGAGGAA 59.482 43.478 15.19 0.00 37.20 3.36
42 43 4.019681 ACACCTATTCGTGAATGGAGGAAA 60.020 41.667 15.19 0.00 37.20 3.13
43 44 4.941263 CACCTATTCGTGAATGGAGGAAAA 59.059 41.667 15.19 0.00 35.68 2.29
44 45 4.941873 ACCTATTCGTGAATGGAGGAAAAC 59.058 41.667 15.19 0.00 33.07 2.43
45 46 4.941263 CCTATTCGTGAATGGAGGAAAACA 59.059 41.667 7.44 0.00 31.27 2.83
46 47 4.766404 ATTCGTGAATGGAGGAAAACAC 57.234 40.909 0.00 0.00 0.00 3.32
47 48 2.594529 CGTGAATGGAGGAAAACACG 57.405 50.000 0.00 0.00 43.10 4.49
48 49 1.399727 CGTGAATGGAGGAAAACACGC 60.400 52.381 0.00 0.00 42.73 5.34
49 50 1.606668 GTGAATGGAGGAAAACACGCA 59.393 47.619 0.00 0.00 0.00 5.24
50 51 2.228822 GTGAATGGAGGAAAACACGCAT 59.771 45.455 0.00 0.00 0.00 4.73
51 52 2.228582 TGAATGGAGGAAAACACGCATG 59.771 45.455 0.00 0.00 0.00 4.06
52 53 0.527565 ATGGAGGAAAACACGCATGC 59.472 50.000 7.91 7.91 0.00 4.06
53 54 0.821301 TGGAGGAAAACACGCATGCA 60.821 50.000 19.57 0.00 0.00 3.96
54 55 0.313672 GGAGGAAAACACGCATGCAA 59.686 50.000 19.57 0.00 0.00 4.08
55 56 1.067635 GGAGGAAAACACGCATGCAAT 60.068 47.619 19.57 1.32 0.00 3.56
56 57 2.610232 GGAGGAAAACACGCATGCAATT 60.610 45.455 19.57 5.33 0.00 2.32
57 58 3.059166 GAGGAAAACACGCATGCAATTT 58.941 40.909 19.57 11.43 0.00 1.82
58 59 4.233789 GAGGAAAACACGCATGCAATTTA 58.766 39.130 19.57 0.00 0.00 1.40
59 60 4.626042 AGGAAAACACGCATGCAATTTAA 58.374 34.783 19.57 0.00 0.00 1.52
60 61 5.053145 AGGAAAACACGCATGCAATTTAAA 58.947 33.333 19.57 0.00 0.00 1.52
61 62 5.525378 AGGAAAACACGCATGCAATTTAAAA 59.475 32.000 19.57 0.00 0.00 1.52
62 63 6.204495 AGGAAAACACGCATGCAATTTAAAAT 59.796 30.769 19.57 0.00 0.00 1.82
63 64 6.519419 GGAAAACACGCATGCAATTTAAAATC 59.481 34.615 19.57 8.43 0.00 2.17
64 65 6.536731 AAACACGCATGCAATTTAAAATCA 57.463 29.167 19.57 0.00 0.00 2.57
65 66 6.536731 AACACGCATGCAATTTAAAATCAA 57.463 29.167 19.57 0.00 0.00 2.57
66 67 6.536731 ACACGCATGCAATTTAAAATCAAA 57.463 29.167 19.57 0.00 0.00 2.69
67 68 6.361899 ACACGCATGCAATTTAAAATCAAAC 58.638 32.000 19.57 0.00 0.00 2.93
68 69 5.789512 CACGCATGCAATTTAAAATCAAACC 59.210 36.000 19.57 0.00 0.00 3.27
69 70 5.468072 ACGCATGCAATTTAAAATCAAACCA 59.532 32.000 19.57 0.00 0.00 3.67
70 71 5.789512 CGCATGCAATTTAAAATCAAACCAC 59.210 36.000 19.57 0.00 0.00 4.16
71 72 6.565435 CGCATGCAATTTAAAATCAAACCACA 60.565 34.615 19.57 0.00 0.00 4.17
72 73 7.137426 GCATGCAATTTAAAATCAAACCACAA 58.863 30.769 14.21 0.00 0.00 3.33
73 74 7.646922 GCATGCAATTTAAAATCAAACCACAAA 59.353 29.630 14.21 0.00 0.00 2.83
74 75 9.680315 CATGCAATTTAAAATCAAACCACAAAT 57.320 25.926 0.00 0.00 0.00 2.32
75 76 9.680315 ATGCAATTTAAAATCAAACCACAAATG 57.320 25.926 0.00 0.00 0.00 2.32
76 77 8.680903 TGCAATTTAAAATCAAACCACAAATGT 58.319 25.926 0.00 0.00 0.00 2.71
89 90 9.906660 CAAACCACAAATGTACTAATAATGTGT 57.093 29.630 0.00 0.00 35.99 3.72
147 148 9.554395 TCTTTTATAATATGGATTCAACGAGCA 57.446 29.630 0.00 0.00 0.00 4.26
148 149 9.817365 CTTTTATAATATGGATTCAACGAGCAG 57.183 33.333 0.00 0.00 0.00 4.24
149 150 8.902540 TTTATAATATGGATTCAACGAGCAGT 57.097 30.769 0.00 0.00 0.00 4.40
150 151 9.990360 TTTATAATATGGATTCAACGAGCAGTA 57.010 29.630 0.00 0.00 0.00 2.74
151 152 7.891183 ATAATATGGATTCAACGAGCAGTAC 57.109 36.000 0.00 0.00 0.00 2.73
152 153 3.610040 ATGGATTCAACGAGCAGTACA 57.390 42.857 0.00 0.00 0.00 2.90
153 154 3.610040 TGGATTCAACGAGCAGTACAT 57.390 42.857 0.00 0.00 0.00 2.29
154 155 3.937814 TGGATTCAACGAGCAGTACATT 58.062 40.909 0.00 0.00 0.00 2.71
155 156 3.684305 TGGATTCAACGAGCAGTACATTG 59.316 43.478 0.00 0.00 0.00 2.82
156 157 3.684788 GGATTCAACGAGCAGTACATTGT 59.315 43.478 0.00 0.00 0.00 2.71
157 158 4.154195 GGATTCAACGAGCAGTACATTGTT 59.846 41.667 0.00 0.00 0.00 2.83
158 159 5.350365 GGATTCAACGAGCAGTACATTGTTA 59.650 40.000 0.00 0.00 0.00 2.41
159 160 6.037172 GGATTCAACGAGCAGTACATTGTTAT 59.963 38.462 0.00 0.00 0.00 1.89
160 161 7.223971 GGATTCAACGAGCAGTACATTGTTATA 59.776 37.037 0.00 0.00 0.00 0.98
161 162 8.662781 ATTCAACGAGCAGTACATTGTTATAT 57.337 30.769 0.00 0.00 0.00 0.86
162 163 9.758651 ATTCAACGAGCAGTACATTGTTATATA 57.241 29.630 0.00 0.00 0.00 0.86
163 164 9.758651 TTCAACGAGCAGTACATTGTTATATAT 57.241 29.630 0.00 0.00 0.00 0.86
192 193 8.279970 TCACATATGGTCAATCTAACTTTTGG 57.720 34.615 7.80 0.00 0.00 3.28
193 194 7.888021 TCACATATGGTCAATCTAACTTTTGGT 59.112 33.333 7.80 0.00 0.00 3.67
194 195 8.184192 CACATATGGTCAATCTAACTTTTGGTC 58.816 37.037 7.80 0.00 0.00 4.02
195 196 7.339466 ACATATGGTCAATCTAACTTTTGGTCC 59.661 37.037 7.80 0.00 0.00 4.46
196 197 5.055265 TGGTCAATCTAACTTTTGGTCCA 57.945 39.130 0.00 0.00 0.00 4.02
197 198 5.450453 TGGTCAATCTAACTTTTGGTCCAA 58.550 37.500 0.00 0.00 30.56 3.53
198 199 5.894393 TGGTCAATCTAACTTTTGGTCCAAA 59.106 36.000 13.26 13.26 30.56 3.28
199 200 6.381420 TGGTCAATCTAACTTTTGGTCCAAAA 59.619 34.615 24.91 24.91 40.41 2.44
200 201 7.070571 TGGTCAATCTAACTTTTGGTCCAAAAT 59.929 33.333 26.30 16.85 41.53 1.82
201 202 8.581578 GGTCAATCTAACTTTTGGTCCAAAATA 58.418 33.333 26.30 17.05 41.53 1.40
216 217 8.877779 TGGTCCAAAATATAATTTTGAAATGCG 58.122 29.630 21.04 7.99 40.73 4.73
217 218 8.878769 GGTCCAAAATATAATTTTGAAATGCGT 58.121 29.630 21.04 0.00 40.73 5.24
218 219 9.687717 GTCCAAAATATAATTTTGAAATGCGTG 57.312 29.630 21.04 6.91 40.73 5.34
219 220 8.386606 TCCAAAATATAATTTTGAAATGCGTGC 58.613 29.630 21.04 0.00 40.73 5.34
220 221 7.639461 CCAAAATATAATTTTGAAATGCGTGCC 59.361 33.333 21.04 0.00 40.73 5.01
221 222 6.509317 AATATAATTTTGAAATGCGTGCCG 57.491 33.333 0.00 0.00 0.00 5.69
222 223 1.427435 AATTTTGAAATGCGTGCCGG 58.573 45.000 0.00 0.00 0.00 6.13
223 224 0.389687 ATTTTGAAATGCGTGCCGGG 60.390 50.000 2.18 0.00 0.00 5.73
224 225 3.565910 TTTGAAATGCGTGCCGGGC 62.566 57.895 13.32 13.32 0.00 6.13
233 234 2.759560 GTGCCGGGCCCATTCATT 60.760 61.111 24.92 0.00 0.00 2.57
234 235 2.759149 TGCCGGGCCCATTCATTG 60.759 61.111 24.92 2.52 0.00 2.82
235 236 3.539791 GCCGGGCCCATTCATTGG 61.540 66.667 24.92 14.29 46.00 3.16
252 253 9.489084 CATTCATTGGAATTGAAATCATATGCT 57.511 29.630 0.00 0.00 41.78 3.79
258 259 7.849160 TGGAATTGAAATCATATGCTTTGGAA 58.151 30.769 9.18 3.14 0.00 3.53
289 290 4.295051 CAAAAACTACCACATTTCACGGG 58.705 43.478 0.00 0.00 0.00 5.28
293 294 2.105134 ACTACCACATTTCACGGGAACA 59.895 45.455 0.00 0.00 31.35 3.18
299 300 3.191162 CACATTTCACGGGAACATGACAT 59.809 43.478 21.54 2.54 31.35 3.06
307 308 6.231951 TCACGGGAACATGACATAAAACTAA 58.768 36.000 0.00 0.00 0.00 2.24
314 315 9.394477 GGAACATGACATAAAACTAACACTTTC 57.606 33.333 0.00 0.00 0.00 2.62
420 421 0.106519 AAGCACCAAACTGACCAGCT 60.107 50.000 0.00 0.00 0.00 4.24
483 484 3.037249 GTGTTAACGGCGCGTCCA 61.037 61.111 17.57 1.53 39.99 4.02
529 530 3.650070 TGCGTTCAATGCACCAAAATA 57.350 38.095 0.00 0.00 34.76 1.40
532 533 4.172505 GCGTTCAATGCACCAAAATATGA 58.827 39.130 0.00 0.00 0.00 2.15
633 635 1.743623 CACCGTGGCGCCTGAAATA 60.744 57.895 29.70 1.94 0.00 1.40
755 757 9.482627 TTTTCCGCACAAAATTATAAAGTGATT 57.517 25.926 12.18 0.00 32.14 2.57
773 775 4.433304 GTGATTGTTTTCTGTCACGTTTCG 59.567 41.667 0.00 0.00 32.64 3.46
812 815 9.581099 AGTTTTTGTTAAATACTCTGTGGTTTG 57.419 29.630 0.00 0.00 0.00 2.93
843 846 3.315191 GCAGCGCCCTAATTTTGATCTAA 59.685 43.478 2.29 0.00 0.00 2.10
844 847 4.555511 GCAGCGCCCTAATTTTGATCTAAG 60.556 45.833 2.29 0.00 0.00 2.18
872 878 1.548719 TCATAACTGACCCGGAGTGTG 59.451 52.381 0.73 2.08 0.00 3.82
895 902 4.748600 GGTTATATAAACACGAGCTCCACC 59.251 45.833 8.47 0.00 0.00 4.61
901 908 0.036952 ACACGAGCTCCACCAGAATG 60.037 55.000 8.47 0.00 0.00 2.67
976 983 2.149803 TACGTCCAGGTCAACAGGCG 62.150 60.000 0.00 0.00 0.00 5.52
1005 1012 1.111277 TCGGCGAGAGATCAATGGAA 58.889 50.000 4.99 0.00 0.00 3.53
1010 1017 3.181465 GGCGAGAGATCAATGGAAGGTTA 60.181 47.826 0.00 0.00 0.00 2.85
1168 1184 2.203209 CCATGGGGTAAGCTCGCC 60.203 66.667 2.85 1.82 40.24 5.54
1179 1198 2.815647 GCTCGCCGCTGCTTAACT 60.816 61.111 0.00 0.00 35.14 2.24
1192 1211 1.533731 GCTTAACTGCGGTGCAACTTA 59.466 47.619 0.00 0.00 38.41 2.24
1213 1232 8.092521 ACTTAGCATAATCCTTGATCAAATCG 57.907 34.615 9.88 0.00 0.00 3.34
1214 1233 7.933577 ACTTAGCATAATCCTTGATCAAATCGA 59.066 33.333 9.88 5.86 0.00 3.59
1215 1234 8.675705 TTAGCATAATCCTTGATCAAATCGAA 57.324 30.769 9.88 0.00 0.00 3.71
1218 1237 7.025963 GCATAATCCTTGATCAAATCGAATCC 58.974 38.462 9.88 0.00 0.00 3.01
1219 1238 7.533426 CATAATCCTTGATCAAATCGAATCCC 58.467 38.462 9.88 0.00 0.00 3.85
1221 1240 3.459598 TCCTTGATCAAATCGAATCCCCT 59.540 43.478 9.88 0.00 0.00 4.79
1222 1241 4.079787 TCCTTGATCAAATCGAATCCCCTT 60.080 41.667 9.88 0.00 0.00 3.95
1234 1253 5.459505 TCGAATCCCCTTTTCTATCTCTCT 58.540 41.667 0.00 0.00 0.00 3.10
1248 1267 0.539051 CTCTCTTCGGCAGGTGGAAT 59.461 55.000 0.00 0.00 0.00 3.01
1266 1285 2.246719 ATAGCTGGAATCACTTCGCC 57.753 50.000 0.00 0.00 31.75 5.54
1315 1334 1.511768 GAGACCGGTACCAGCTGAC 59.488 63.158 17.39 6.09 0.00 3.51
1318 1337 1.946475 GACCGGTACCAGCTGACCTC 61.946 65.000 17.39 6.68 33.21 3.85
1319 1338 2.490217 CGGTACCAGCTGACCTCG 59.510 66.667 17.39 10.03 33.21 4.63
1343 1362 6.592607 CGTAGTCCCTTTGCTTCTTATTTACA 59.407 38.462 0.00 0.00 0.00 2.41
1344 1363 7.118680 CGTAGTCCCTTTGCTTCTTATTTACAA 59.881 37.037 0.00 0.00 0.00 2.41
1345 1364 7.833285 AGTCCCTTTGCTTCTTATTTACAAA 57.167 32.000 0.00 0.00 0.00 2.83
1346 1365 7.886338 AGTCCCTTTGCTTCTTATTTACAAAG 58.114 34.615 6.77 6.77 44.23 2.77
1347 1366 7.505923 AGTCCCTTTGCTTCTTATTTACAAAGT 59.494 33.333 11.52 0.00 43.50 2.66
1348 1367 8.789762 GTCCCTTTGCTTCTTATTTACAAAGTA 58.210 33.333 11.52 0.00 43.50 2.24
1349 1368 9.010029 TCCCTTTGCTTCTTATTTACAAAGTAG 57.990 33.333 11.52 4.60 43.50 2.57
1350 1369 8.793592 CCCTTTGCTTCTTATTTACAAAGTAGT 58.206 33.333 11.52 0.00 43.50 2.73
1375 1394 6.276832 GTAGTATACTGTTGAACTGTCCCA 57.723 41.667 15.90 0.00 38.91 4.37
1377 1396 5.734720 AGTATACTGTTGAACTGTCCCATG 58.265 41.667 11.16 0.00 32.45 3.66
1378 1397 2.276732 ACTGTTGAACTGTCCCATGG 57.723 50.000 4.14 4.14 0.00 3.66
1379 1398 1.202927 ACTGTTGAACTGTCCCATGGG 60.203 52.381 26.30 26.30 0.00 4.00
1380 1399 0.112218 TGTTGAACTGTCCCATGGGG 59.888 55.000 30.93 17.20 46.11 4.96
1382 1401 1.353022 GTTGAACTGTCCCATGGGGTA 59.647 52.381 30.93 18.21 44.74 3.69
1383 1402 1.748732 TGAACTGTCCCATGGGGTAA 58.251 50.000 30.93 15.13 44.74 2.85
1385 1404 2.447429 TGAACTGTCCCATGGGGTAAAA 59.553 45.455 30.93 8.14 44.74 1.52
1386 1405 3.117093 TGAACTGTCCCATGGGGTAAAAA 60.117 43.478 30.93 7.29 44.74 1.94
1387 1406 2.884320 ACTGTCCCATGGGGTAAAAAC 58.116 47.619 30.93 19.90 44.74 2.43
1388 1407 2.449345 ACTGTCCCATGGGGTAAAAACT 59.551 45.455 30.93 2.50 44.74 2.66
1389 1408 3.089284 CTGTCCCATGGGGTAAAAACTC 58.911 50.000 30.93 10.13 44.74 3.01
1390 1409 2.719705 TGTCCCATGGGGTAAAAACTCT 59.280 45.455 30.93 0.00 44.74 3.24
1391 1410 3.141272 TGTCCCATGGGGTAAAAACTCTT 59.859 43.478 30.93 0.00 44.74 2.85
1392 1411 4.157246 GTCCCATGGGGTAAAAACTCTTT 58.843 43.478 30.93 0.00 44.74 2.52
1393 1412 4.591498 GTCCCATGGGGTAAAAACTCTTTT 59.409 41.667 30.93 0.00 44.74 2.27
1394 1413 5.776208 GTCCCATGGGGTAAAAACTCTTTTA 59.224 40.000 30.93 1.86 44.74 1.52
1507 1540 4.873810 TGGTGCGTTGCTGCCACT 62.874 61.111 2.24 0.00 31.96 4.00
1522 1555 0.671251 CCACTCTCTCATACGCCCTC 59.329 60.000 0.00 0.00 0.00 4.30
1524 1557 1.284408 CTCTCTCATACGCCCTCGC 59.716 63.158 0.00 0.00 39.84 5.03
1556 1592 1.066002 CTGTGTGTGCTTCCCTGTTTG 59.934 52.381 0.00 0.00 0.00 2.93
1559 1595 1.102978 GTGTGCTTCCCTGTTTGTGT 58.897 50.000 0.00 0.00 0.00 3.72
1560 1596 1.476488 GTGTGCTTCCCTGTTTGTGTT 59.524 47.619 0.00 0.00 0.00 3.32
1561 1597 1.476085 TGTGCTTCCCTGTTTGTGTTG 59.524 47.619 0.00 0.00 0.00 3.33
1564 1602 1.067060 GCTTCCCTGTTTGTGTTGGAC 59.933 52.381 0.00 0.00 0.00 4.02
1568 1606 1.746220 CCCTGTTTGTGTTGGACGAAA 59.254 47.619 0.00 0.00 29.12 3.46
1570 1608 3.566322 CCCTGTTTGTGTTGGACGAAATA 59.434 43.478 0.00 0.00 29.12 1.40
1579 1617 6.364261 TGTGTTGGACGAAATATTTTACGTG 58.636 36.000 16.81 2.82 39.04 4.49
1580 1618 6.202379 TGTGTTGGACGAAATATTTTACGTGA 59.798 34.615 16.81 4.01 39.04 4.35
1581 1619 7.095144 TGTGTTGGACGAAATATTTTACGTGAT 60.095 33.333 16.81 0.00 39.04 3.06
1630 1668 3.319122 ACAAAGTGGATTGAGCCAACTTC 59.681 43.478 0.00 0.00 40.20 3.01
1637 1675 1.013596 TTGAGCCAACTTCGTGTGTG 58.986 50.000 0.00 0.00 0.00 3.82
1638 1676 0.107897 TGAGCCAACTTCGTGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
1639 1677 0.304705 GAGCCAACTTCGTGTGTGTG 59.695 55.000 0.00 0.00 0.00 3.82
1640 1678 0.107897 AGCCAACTTCGTGTGTGTGA 60.108 50.000 0.00 0.00 0.00 3.58
1644 1682 3.733684 GCCAACTTCGTGTGTGTGATTTT 60.734 43.478 0.00 0.00 0.00 1.82
1702 1741 2.222213 CGTGATGCGAAGGTTTGTACAA 59.778 45.455 3.59 3.59 44.77 2.41
1745 1787 3.735237 TGTCTGAACACTCTTCTGGAC 57.265 47.619 0.00 0.00 0.00 4.02
1746 1788 3.300388 TGTCTGAACACTCTTCTGGACT 58.700 45.455 0.00 0.00 0.00 3.85
1747 1789 3.068732 TGTCTGAACACTCTTCTGGACTG 59.931 47.826 0.00 0.00 0.00 3.51
1748 1790 2.036475 TCTGAACACTCTTCTGGACTGC 59.964 50.000 0.00 0.00 0.00 4.40
1750 1792 2.139118 GAACACTCTTCTGGACTGCAC 58.861 52.381 0.00 0.00 0.00 4.57
1753 1816 2.074576 CACTCTTCTGGACTGCACATG 58.925 52.381 0.00 0.00 0.00 3.21
1757 1820 2.568509 TCTTCTGGACTGCACATGATCA 59.431 45.455 0.00 0.00 0.00 2.92
1763 1826 2.871022 GGACTGCACATGATCATCTGTC 59.129 50.000 17.54 17.54 0.00 3.51
1764 1827 3.528532 GACTGCACATGATCATCTGTCA 58.471 45.455 19.43 13.75 0.00 3.58
1768 1831 3.004862 GCACATGATCATCTGTCACACA 58.995 45.455 4.86 0.00 0.00 3.72
1818 1881 0.782384 CGAACAAGAAGACGTTCCCG 59.218 55.000 0.00 0.00 38.63 5.14
1922 1988 2.159037 TGACTGTCGTCGTAGTAAGCTG 59.841 50.000 2.98 0.00 43.21 4.24
1938 2004 2.981898 AGCTGTGACGGTAATTTACCC 58.018 47.619 17.92 7.32 46.27 3.69
1949 2015 5.661759 ACGGTAATTTACCCTTCTCTGATCT 59.338 40.000 17.92 0.00 46.27 2.75
1951 2017 7.343833 ACGGTAATTTACCCTTCTCTGATCTTA 59.656 37.037 17.92 0.00 46.27 2.10
1952 2018 8.202137 CGGTAATTTACCCTTCTCTGATCTTAA 58.798 37.037 17.92 0.00 46.27 1.85
1989 2055 2.749044 ACATGCGCCAAGGCTCAG 60.749 61.111 4.18 4.80 39.28 3.35
2034 2100 2.626780 GGACGCCAAGACCTTTGCC 61.627 63.158 1.01 0.00 0.00 4.52
2050 2116 3.036429 GCCTCCTGGGTGAGCGATT 62.036 63.158 0.00 0.00 37.43 3.34
2054 2120 0.911769 TCCTGGGTGAGCGATTGATT 59.088 50.000 0.00 0.00 0.00 2.57
2056 2122 1.303309 CTGGGTGAGCGATTGATTCC 58.697 55.000 0.00 0.00 0.00 3.01
2057 2123 0.617935 TGGGTGAGCGATTGATTCCA 59.382 50.000 0.00 0.00 0.00 3.53
2058 2124 1.004161 TGGGTGAGCGATTGATTCCAA 59.996 47.619 0.00 0.00 36.61 3.53
2059 2125 2.091541 GGGTGAGCGATTGATTCCAAA 58.908 47.619 0.00 0.00 35.67 3.28
2065 2148 4.278170 TGAGCGATTGATTCCAAAACTTGT 59.722 37.500 0.00 0.00 35.67 3.16
2085 2168 6.432162 ACTTGTGCATATCTCTGATGTGTTTT 59.568 34.615 0.00 0.00 0.00 2.43
2126 2210 0.106268 TTGCTTGCTGGTTTCAGGGA 60.106 50.000 0.00 0.00 41.19 4.20
2127 2211 0.538057 TGCTTGCTGGTTTCAGGGAG 60.538 55.000 0.00 0.00 41.19 4.30
2301 2392 2.596452 CGTAGCTGATTCGAGTTGTGT 58.404 47.619 0.00 0.00 0.00 3.72
2332 2433 3.020984 GAGTTCCTCATTCTCGTCCTCT 58.979 50.000 0.00 0.00 0.00 3.69
2430 2531 1.142060 TGGAGAACCACCAACGACATT 59.858 47.619 0.00 0.00 41.77 2.71
2477 2580 2.579657 GGCCCGTTTCCCCTTTTGG 61.580 63.158 0.00 0.00 39.97 3.28
2478 2581 3.056458 CCCGTTTCCCCTTTTGGC 58.944 61.111 0.00 0.00 38.58 4.52
2479 2582 2.579657 CCCGTTTCCCCTTTTGGCC 61.580 63.158 0.00 0.00 38.58 5.36
2480 2583 1.834822 CCGTTTCCCCTTTTGGCCA 60.835 57.895 0.00 0.00 38.58 5.36
2481 2584 1.191489 CCGTTTCCCCTTTTGGCCAT 61.191 55.000 6.09 0.00 38.58 4.40
2482 2585 0.246360 CGTTTCCCCTTTTGGCCATC 59.754 55.000 6.09 0.00 38.58 3.51
2483 2586 0.613260 GTTTCCCCTTTTGGCCATCC 59.387 55.000 6.09 0.00 38.58 3.51
2484 2587 0.491371 TTTCCCCTTTTGGCCATCCT 59.509 50.000 6.09 0.00 38.58 3.24
2485 2588 0.252193 TTCCCCTTTTGGCCATCCTG 60.252 55.000 6.09 0.00 38.58 3.86
2486 2589 2.361567 CCCCTTTTGGCCATCCTGC 61.362 63.158 6.09 0.00 38.58 4.85
2487 2590 1.305549 CCCTTTTGGCCATCCTGCT 60.306 57.895 6.09 0.00 38.58 4.24
2488 2591 1.610554 CCCTTTTGGCCATCCTGCTG 61.611 60.000 6.09 0.00 38.58 4.41
2489 2592 1.610554 CCTTTTGGCCATCCTGCTGG 61.611 60.000 6.09 2.58 39.45 4.85
2497 2600 4.043100 ATCCTGCTGGCTGCTGCA 62.043 61.111 17.89 16.73 43.37 4.41
2505 2608 1.575576 CTGGCTGCTGCAACTCTGTC 61.576 60.000 17.89 0.00 41.91 3.51
2636 2739 2.104963 AGTCAGTCCCTGGAACAAACTC 59.895 50.000 0.00 0.00 38.70 3.01
2646 2749 4.938226 CCTGGAACAAACTCCTCATCTTAC 59.062 45.833 0.00 0.00 38.70 2.34
2650 2753 5.470047 AACAAACTCCTCATCTTACGAGT 57.530 39.130 0.00 0.00 37.17 4.18
2712 5213 0.319211 TTTGACGCTCTGGTACGTGG 60.319 55.000 0.00 0.00 43.71 4.94
2713 5214 2.506438 GACGCTCTGGTACGTGGC 60.506 66.667 0.00 0.00 43.71 5.01
2798 5309 2.413142 GCACTTCAGCATCTGGGCC 61.413 63.158 0.00 0.00 31.51 5.80
2877 5392 6.645415 TCGTTCTTTTCTTCTCTGAATGTACC 59.355 38.462 0.00 0.00 0.00 3.34
2999 5514 3.353836 CGCCGTCAACCAAGGTGG 61.354 66.667 0.00 0.00 45.02 4.61
3017 5533 0.462759 GGTCTTCAGATCCCCTTGCG 60.463 60.000 0.00 0.00 0.00 4.85
3019 5535 1.222936 CTTCAGATCCCCTTGCGCT 59.777 57.895 9.73 0.00 0.00 5.92
3029 5545 1.205064 CCTTGCGCTTGTCAGTTCG 59.795 57.895 9.73 0.00 0.00 3.95
3035 5551 2.035442 GCTTGTCAGTTCGGGCTCC 61.035 63.158 0.00 0.00 0.00 4.70
3055 5571 2.148365 GCTCTCGCGTTTGCATTGC 61.148 57.895 5.77 0.46 42.97 3.56
3058 5574 1.798725 CTCGCGTTTGCATTGCCAG 60.799 57.895 5.77 0.00 42.97 4.85
3060 5576 2.356075 GCGTTTGCATTGCCAGCA 60.356 55.556 6.12 0.00 42.15 4.41
3061 5577 2.377310 GCGTTTGCATTGCCAGCAG 61.377 57.895 6.12 0.00 43.75 4.24
3062 5578 1.735198 CGTTTGCATTGCCAGCAGG 60.735 57.895 6.12 0.00 43.75 4.85
3064 5580 1.837947 TTTGCATTGCCAGCAGGGT 60.838 52.632 6.12 0.00 43.75 4.34
3065 5581 2.102109 TTTGCATTGCCAGCAGGGTG 62.102 55.000 6.12 0.00 43.75 4.61
3076 5600 0.247736 AGCAGGGTGAACTGATCGAC 59.752 55.000 0.00 0.00 40.97 4.20
3082 5606 1.080093 TGAACTGATCGACCGTGGC 60.080 57.895 0.00 0.00 0.00 5.01
3087 5611 1.683790 CTGATCGACCGTGGCGTTTC 61.684 60.000 0.00 0.00 0.00 2.78
3093 5617 1.441732 GACCGTGGCGTTTCTTGGTT 61.442 55.000 0.00 0.00 0.00 3.67
3094 5618 1.033202 ACCGTGGCGTTTCTTGGTTT 61.033 50.000 0.00 0.00 0.00 3.27
3110 5634 1.952296 GGTTTAGATCCTCTCGGCGTA 59.048 52.381 6.85 0.00 0.00 4.42
3159 5683 3.768632 GCGAGGTAACAGACGCTG 58.231 61.111 9.14 5.47 46.39 5.18
3160 5684 2.445438 GCGAGGTAACAGACGCTGC 61.445 63.158 9.14 0.00 46.39 5.25
3161 5685 1.080772 CGAGGTAACAGACGCTGCA 60.081 57.895 0.00 0.00 41.41 4.41
3162 5686 1.344942 CGAGGTAACAGACGCTGCAC 61.345 60.000 0.00 5.55 41.41 4.57
3163 5687 1.004918 AGGTAACAGACGCTGCACC 60.005 57.895 16.53 16.53 39.02 5.01
3185 5709 2.748605 CACTGCACTCTCCGATAATCC 58.251 52.381 0.00 0.00 0.00 3.01
3204 5728 2.299582 TCCGAACTTCCCACATCGTAAA 59.700 45.455 0.00 0.00 33.65 2.01
3216 5740 4.319477 CCACATCGTAAACCAAGAACTGTG 60.319 45.833 0.00 0.00 30.18 3.66
3224 5748 2.919228 ACCAAGAACTGTGACTGAACC 58.081 47.619 0.00 0.00 0.00 3.62
3406 5938 3.354467 CTGGTACGTCTCTACCTTTCCT 58.646 50.000 6.77 0.00 37.63 3.36
3409 5941 2.197283 ACGTCTCTACCTTTCCTCGT 57.803 50.000 0.00 0.00 0.00 4.18
3411 5943 2.082231 CGTCTCTACCTTTCCTCGTCA 58.918 52.381 0.00 0.00 0.00 4.35
3413 5945 2.093106 TCTCTACCTTTCCTCGTCAGC 58.907 52.381 0.00 0.00 0.00 4.26
3414 5946 1.819288 CTCTACCTTTCCTCGTCAGCA 59.181 52.381 0.00 0.00 0.00 4.41
3416 5948 2.231478 TCTACCTTTCCTCGTCAGCAAG 59.769 50.000 0.00 0.00 0.00 4.01
3420 5952 1.603802 CTTTCCTCGTCAGCAAGCAAA 59.396 47.619 0.00 0.00 0.00 3.68
3422 5954 0.179059 TCCTCGTCAGCAAGCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
3423 5955 0.236711 CCTCGTCAGCAAGCAAACAG 59.763 55.000 0.00 0.00 0.00 3.16
3424 5956 1.220529 CTCGTCAGCAAGCAAACAGA 58.779 50.000 0.00 0.00 0.00 3.41
3459 5991 4.635765 TGGATGAATCATCTTGACCGTTTC 59.364 41.667 21.04 3.09 40.39 2.78
3464 5996 1.069513 TCATCTTGACCGTTTCGTGGT 59.930 47.619 0.00 0.00 44.10 4.16
3465 5997 1.871039 CATCTTGACCGTTTCGTGGTT 59.129 47.619 0.00 0.00 40.63 3.67
3466 5998 2.027003 TCTTGACCGTTTCGTGGTTT 57.973 45.000 0.00 0.00 40.63 3.27
3467 5999 2.358015 TCTTGACCGTTTCGTGGTTTT 58.642 42.857 0.00 0.00 40.63 2.43
3621 6154 3.131478 GGGTTGATGCCCGTTCCG 61.131 66.667 0.00 0.00 39.17 4.30
3626 6159 2.011222 GTTGATGCCCGTTCCGAAATA 58.989 47.619 0.00 0.00 0.00 1.40
3628 6161 3.755112 TGATGCCCGTTCCGAAATATA 57.245 42.857 0.00 0.00 0.00 0.86
3631 6164 3.478857 TGCCCGTTCCGAAATATACAT 57.521 42.857 0.00 0.00 0.00 2.29
3632 6165 3.811083 TGCCCGTTCCGAAATATACATT 58.189 40.909 0.00 0.00 0.00 2.71
3633 6166 4.200874 TGCCCGTTCCGAAATATACATTT 58.799 39.130 0.00 0.00 37.06 2.32
3635 6168 5.209977 GCCCGTTCCGAAATATACATTTTC 58.790 41.667 0.00 0.00 34.44 2.29
3636 6169 5.754778 CCCGTTCCGAAATATACATTTTCC 58.245 41.667 0.00 0.00 34.44 3.13
3637 6170 5.278120 CCCGTTCCGAAATATACATTTTCCC 60.278 44.000 0.00 0.00 34.44 3.97
3638 6171 5.278120 CCGTTCCGAAATATACATTTTCCCC 60.278 44.000 0.00 0.00 34.44 4.81
3639 6172 5.278120 CGTTCCGAAATATACATTTTCCCCC 60.278 44.000 0.00 0.00 34.44 5.40
3640 6173 5.656549 TCCGAAATATACATTTTCCCCCT 57.343 39.130 0.00 0.00 34.44 4.79
3641 6174 5.381757 TCCGAAATATACATTTTCCCCCTG 58.618 41.667 0.00 0.00 34.44 4.45
3642 6175 4.022329 CCGAAATATACATTTTCCCCCTGC 60.022 45.833 0.00 0.00 34.44 4.85
3643 6176 4.827284 CGAAATATACATTTTCCCCCTGCT 59.173 41.667 0.00 0.00 34.44 4.24
3645 6178 6.072673 CGAAATATACATTTTCCCCCTGCTAC 60.073 42.308 0.00 0.00 34.44 3.58
3646 6179 6.530601 AATATACATTTTCCCCCTGCTACT 57.469 37.500 0.00 0.00 0.00 2.57
3648 6181 3.087370 ACATTTTCCCCCTGCTACTTC 57.913 47.619 0.00 0.00 0.00 3.01
3649 6182 2.649816 ACATTTTCCCCCTGCTACTTCT 59.350 45.455 0.00 0.00 0.00 2.85
3651 6184 4.478686 ACATTTTCCCCCTGCTACTTCTAT 59.521 41.667 0.00 0.00 0.00 1.98
3653 6186 5.530176 TTTTCCCCCTGCTACTTCTATTT 57.470 39.130 0.00 0.00 0.00 1.40
3725 6280 9.386010 TGACAACTTTTAGTGTGTGTAATAAGT 57.614 29.630 0.00 0.00 0.00 2.24
3735 6290 7.039882 AGTGTGTGTAATAAGTAGTACCATGC 58.960 38.462 0.00 0.00 0.00 4.06
3736 6291 6.814644 GTGTGTGTAATAAGTAGTACCATGCA 59.185 38.462 0.00 0.00 0.00 3.96
3737 6292 7.010183 GTGTGTGTAATAAGTAGTACCATGCAG 59.990 40.741 0.00 0.00 0.00 4.41
3738 6293 6.018994 GTGTGTAATAAGTAGTACCATGCAGC 60.019 42.308 0.00 0.00 0.00 5.25
3739 6294 6.046593 GTGTAATAAGTAGTACCATGCAGCA 58.953 40.000 0.00 0.00 0.00 4.41
3740 6295 6.201044 GTGTAATAAGTAGTACCATGCAGCAG 59.799 42.308 0.00 0.00 0.00 4.24
3741 6296 2.698855 AAGTAGTACCATGCAGCAGG 57.301 50.000 0.00 0.00 0.00 4.85
3742 6297 0.179000 AGTAGTACCATGCAGCAGGC 59.821 55.000 0.09 0.00 45.13 4.85
3764 6319 3.574284 CGGTGAGCAATTTCCAAATCA 57.426 42.857 0.00 0.00 0.00 2.57
3765 6320 4.114058 CGGTGAGCAATTTCCAAATCAT 57.886 40.909 0.00 0.00 0.00 2.45
3766 6321 4.497300 CGGTGAGCAATTTCCAAATCATT 58.503 39.130 0.00 0.00 0.00 2.57
3767 6322 4.931002 CGGTGAGCAATTTCCAAATCATTT 59.069 37.500 0.00 0.00 0.00 2.32
3768 6323 5.409214 CGGTGAGCAATTTCCAAATCATTTT 59.591 36.000 0.00 0.00 0.00 1.82
3769 6324 6.589523 CGGTGAGCAATTTCCAAATCATTTTA 59.410 34.615 0.00 0.00 0.00 1.52
3770 6325 7.117523 CGGTGAGCAATTTCCAAATCATTTTAA 59.882 33.333 0.00 0.00 0.00 1.52
3771 6326 8.782144 GGTGAGCAATTTCCAAATCATTTTAAA 58.218 29.630 0.00 0.00 0.00 1.52
3855 6410 9.868277 TTTCTTTTGACATCAACATAAACAACT 57.132 25.926 0.00 0.00 35.28 3.16
3858 6413 9.950680 CTTTTGACATCAACATAAACAACTAGT 57.049 29.630 0.00 0.00 35.28 2.57
3859 6414 9.944663 TTTTGACATCAACATAAACAACTAGTC 57.055 29.630 0.00 0.00 35.28 2.59
3860 6415 8.669946 TTGACATCAACATAAACAACTAGTCA 57.330 30.769 0.00 0.00 0.00 3.41
3861 6416 8.083462 TGACATCAACATAAACAACTAGTCAC 57.917 34.615 0.00 0.00 0.00 3.67
3862 6417 7.931407 TGACATCAACATAAACAACTAGTCACT 59.069 33.333 0.00 0.00 0.00 3.41
3863 6418 8.677148 ACATCAACATAAACAACTAGTCACTT 57.323 30.769 0.00 0.00 0.00 3.16
3864 6419 8.559536 ACATCAACATAAACAACTAGTCACTTG 58.440 33.333 0.00 0.00 0.00 3.16
3865 6420 8.559536 CATCAACATAAACAACTAGTCACTTGT 58.440 33.333 0.00 0.00 31.76 3.16
3866 6421 7.915508 TCAACATAAACAACTAGTCACTTGTG 58.084 34.615 0.00 1.30 30.88 3.33
3867 6422 7.766738 TCAACATAAACAACTAGTCACTTGTGA 59.233 33.333 0.00 0.00 30.88 3.58
3868 6423 7.715265 ACATAAACAACTAGTCACTTGTGAG 57.285 36.000 3.45 0.00 30.88 3.51
3869 6424 6.706270 ACATAAACAACTAGTCACTTGTGAGG 59.294 38.462 3.45 1.12 30.88 3.86
3870 6425 4.755266 AACAACTAGTCACTTGTGAGGT 57.245 40.909 3.45 1.69 30.88 3.85
3871 6426 4.323553 ACAACTAGTCACTTGTGAGGTC 57.676 45.455 3.45 0.00 0.00 3.85
3872 6427 3.704566 ACAACTAGTCACTTGTGAGGTCA 59.295 43.478 3.45 0.00 0.00 4.02
3873 6428 4.345257 ACAACTAGTCACTTGTGAGGTCAT 59.655 41.667 3.45 0.00 0.00 3.06
3874 6429 5.538813 ACAACTAGTCACTTGTGAGGTCATA 59.461 40.000 3.45 0.00 0.00 2.15
3875 6430 5.906113 ACTAGTCACTTGTGAGGTCATAG 57.094 43.478 3.45 5.02 0.00 2.23
3876 6431 4.707448 ACTAGTCACTTGTGAGGTCATAGG 59.293 45.833 3.45 0.00 0.00 2.57
3877 6432 2.234908 AGTCACTTGTGAGGTCATAGGC 59.765 50.000 3.45 0.00 0.00 3.93
3878 6433 2.234908 GTCACTTGTGAGGTCATAGGCT 59.765 50.000 3.45 0.00 0.00 4.58
3879 6434 2.906389 TCACTTGTGAGGTCATAGGCTT 59.094 45.455 0.00 0.00 0.00 4.35
3880 6435 3.327757 TCACTTGTGAGGTCATAGGCTTT 59.672 43.478 0.00 0.00 0.00 3.51
3881 6436 3.686726 CACTTGTGAGGTCATAGGCTTTC 59.313 47.826 0.00 0.00 0.00 2.62
3882 6437 2.672961 TGTGAGGTCATAGGCTTTCG 57.327 50.000 0.00 0.00 0.00 3.46
3883 6438 1.899814 TGTGAGGTCATAGGCTTTCGT 59.100 47.619 0.00 0.00 0.00 3.85
3884 6439 2.301870 TGTGAGGTCATAGGCTTTCGTT 59.698 45.455 0.00 0.00 0.00 3.85
3885 6440 3.244422 TGTGAGGTCATAGGCTTTCGTTT 60.244 43.478 0.00 0.00 0.00 3.60
3886 6441 3.371285 GTGAGGTCATAGGCTTTCGTTTC 59.629 47.826 0.00 0.00 0.00 2.78
3887 6442 2.603560 GAGGTCATAGGCTTTCGTTTCG 59.396 50.000 0.00 0.00 0.00 3.46
3888 6443 2.232941 AGGTCATAGGCTTTCGTTTCGA 59.767 45.455 0.00 0.00 0.00 3.71
3889 6444 2.347755 GGTCATAGGCTTTCGTTTCGAC 59.652 50.000 0.00 0.00 34.89 4.20
3890 6445 2.991190 GTCATAGGCTTTCGTTTCGACA 59.009 45.455 0.00 0.00 34.89 4.35
3891 6446 2.991190 TCATAGGCTTTCGTTTCGACAC 59.009 45.455 0.00 0.00 34.89 3.67
3892 6447 2.806608 TAGGCTTTCGTTTCGACACT 57.193 45.000 0.00 0.00 34.89 3.55
3893 6448 1.949465 AGGCTTTCGTTTCGACACTT 58.051 45.000 0.00 0.00 34.89 3.16
3894 6449 1.597663 AGGCTTTCGTTTCGACACTTG 59.402 47.619 0.00 0.00 34.89 3.16
3895 6450 1.333791 GGCTTTCGTTTCGACACTTGG 60.334 52.381 0.00 0.00 34.89 3.61
3896 6451 1.595794 GCTTTCGTTTCGACACTTGGA 59.404 47.619 0.00 0.00 34.89 3.53
3897 6452 2.031191 GCTTTCGTTTCGACACTTGGAA 59.969 45.455 0.00 0.00 34.89 3.53
3898 6453 3.303791 GCTTTCGTTTCGACACTTGGAAT 60.304 43.478 0.00 0.00 34.89 3.01
3899 6454 4.788521 GCTTTCGTTTCGACACTTGGAATT 60.789 41.667 0.00 0.00 34.89 2.17
3900 6455 4.886247 TTCGTTTCGACACTTGGAATTT 57.114 36.364 0.00 0.00 34.89 1.82
3901 6456 4.886247 TCGTTTCGACACTTGGAATTTT 57.114 36.364 0.00 0.00 0.00 1.82
3902 6457 5.987777 TCGTTTCGACACTTGGAATTTTA 57.012 34.783 0.00 0.00 0.00 1.52
3903 6458 5.981174 TCGTTTCGACACTTGGAATTTTAG 58.019 37.500 0.00 0.00 0.00 1.85
3904 6459 5.754406 TCGTTTCGACACTTGGAATTTTAGA 59.246 36.000 0.00 0.00 0.00 2.10
3905 6460 6.071463 CGTTTCGACACTTGGAATTTTAGAG 58.929 40.000 0.00 0.00 0.00 2.43
3906 6461 6.371389 GTTTCGACACTTGGAATTTTAGAGG 58.629 40.000 0.00 0.00 0.00 3.69
3907 6462 5.477607 TCGACACTTGGAATTTTAGAGGA 57.522 39.130 0.00 0.00 0.00 3.71
3908 6463 5.860611 TCGACACTTGGAATTTTAGAGGAA 58.139 37.500 0.00 0.00 0.00 3.36
3909 6464 6.292923 TCGACACTTGGAATTTTAGAGGAAA 58.707 36.000 0.00 0.00 0.00 3.13
3910 6465 6.426937 TCGACACTTGGAATTTTAGAGGAAAG 59.573 38.462 0.00 0.00 0.00 2.62
3911 6466 6.348540 CGACACTTGGAATTTTAGAGGAAAGG 60.349 42.308 0.00 0.00 0.00 3.11
3912 6467 6.373759 ACACTTGGAATTTTAGAGGAAAGGT 58.626 36.000 0.00 0.00 0.00 3.50
3913 6468 7.523415 ACACTTGGAATTTTAGAGGAAAGGTA 58.477 34.615 0.00 0.00 0.00 3.08
3914 6469 7.665974 ACACTTGGAATTTTAGAGGAAAGGTAG 59.334 37.037 0.00 0.00 0.00 3.18
3915 6470 7.121315 CACTTGGAATTTTAGAGGAAAGGTAGG 59.879 40.741 0.00 0.00 0.00 3.18
3916 6471 6.074698 TGGAATTTTAGAGGAAAGGTAGGG 57.925 41.667 0.00 0.00 0.00 3.53
3917 6472 4.888239 GGAATTTTAGAGGAAAGGTAGGGC 59.112 45.833 0.00 0.00 0.00 5.19
3918 6473 4.521536 ATTTTAGAGGAAAGGTAGGGCC 57.478 45.455 0.00 0.00 37.58 5.80
3936 6491 9.363401 GGTAGGGCCTGATTTTATAAATAAAGT 57.637 33.333 18.53 0.00 34.13 2.66
3939 6494 9.487442 AGGGCCTGATTTTATAAATAAAGTCAA 57.513 29.630 4.50 6.24 43.57 3.18
3940 6495 9.529325 GGGCCTGATTTTATAAATAAAGTCAAC 57.471 33.333 16.57 12.90 43.57 3.18
3941 6496 9.529325 GGCCTGATTTTATAAATAAAGTCAACC 57.471 33.333 16.57 16.21 43.57 3.77
3942 6497 9.233232 GCCTGATTTTATAAATAAAGTCAACCG 57.767 33.333 16.57 10.73 43.57 4.44
3943 6498 9.730420 CCTGATTTTATAAATAAAGTCAACCGG 57.270 33.333 16.57 0.00 43.57 5.28
4185 6767 5.051816 GCAGGGTTGTTAGTAACGCATATA 58.948 41.667 8.47 0.00 43.52 0.86
4203 6785 5.611374 CATATACACGTCCCTCAAAAGGAT 58.389 41.667 0.00 0.00 46.67 3.24
4204 6786 2.474410 ACACGTCCCTCAAAAGGATC 57.526 50.000 0.00 0.00 46.67 3.36
4205 6787 1.697432 ACACGTCCCTCAAAAGGATCA 59.303 47.619 0.00 0.00 46.67 2.92
4206 6788 2.289694 ACACGTCCCTCAAAAGGATCAG 60.290 50.000 0.00 0.00 46.67 2.90
4207 6789 1.339151 ACGTCCCTCAAAAGGATCAGC 60.339 52.381 0.00 0.00 46.67 4.26
4208 6790 1.065854 CGTCCCTCAAAAGGATCAGCT 60.066 52.381 0.00 0.00 46.67 4.24
4209 6791 2.637947 GTCCCTCAAAAGGATCAGCTC 58.362 52.381 0.00 0.00 46.67 4.09
4210 6792 2.026822 GTCCCTCAAAAGGATCAGCTCA 60.027 50.000 0.00 0.00 46.67 4.26
4211 6793 2.644299 TCCCTCAAAAGGATCAGCTCAA 59.356 45.455 0.00 0.00 46.67 3.02
4212 6794 3.074390 TCCCTCAAAAGGATCAGCTCAAA 59.926 43.478 0.00 0.00 46.67 2.69
4213 6795 3.828451 CCCTCAAAAGGATCAGCTCAAAA 59.172 43.478 0.00 0.00 46.67 2.44
4214 6796 4.281688 CCCTCAAAAGGATCAGCTCAAAAA 59.718 41.667 0.00 0.00 46.67 1.94
4239 6821 5.607939 AAAACGTCCCTCAAAAGGAAAAT 57.392 34.783 0.00 0.00 46.67 1.82
4260 6842 6.816134 AATAATAATGCATATCCACGCACA 57.184 33.333 0.00 0.00 41.79 4.57
4284 6866 1.283181 CGGATCGAGGAGTTAGCGG 59.717 63.158 0.00 0.00 0.00 5.52
4285 6867 1.007154 GGATCGAGGAGTTAGCGGC 60.007 63.158 0.00 0.00 0.00 6.53
4286 6868 1.370657 GATCGAGGAGTTAGCGGCG 60.371 63.158 0.51 0.51 0.00 6.46
4287 6869 2.734756 GATCGAGGAGTTAGCGGCGG 62.735 65.000 9.78 0.00 0.00 6.13
4288 6870 3.515286 CGAGGAGTTAGCGGCGGA 61.515 66.667 9.78 0.00 0.00 5.54
4289 6871 2.846652 CGAGGAGTTAGCGGCGGAT 61.847 63.158 9.78 0.00 0.00 4.18
4290 6872 1.007154 GAGGAGTTAGCGGCGGATC 60.007 63.158 9.78 0.00 0.00 3.36
4291 6873 2.354773 GGAGTTAGCGGCGGATCG 60.355 66.667 9.78 0.00 0.00 3.69
4292 6874 2.719979 GAGTTAGCGGCGGATCGA 59.280 61.111 9.78 0.00 0.00 3.59
4293 6875 1.657794 GAGTTAGCGGCGGATCGAC 60.658 63.158 9.78 0.00 0.00 4.20
4294 6876 2.061182 GAGTTAGCGGCGGATCGACT 62.061 60.000 9.78 2.03 29.68 4.18
4295 6877 1.944676 GTTAGCGGCGGATCGACTG 60.945 63.158 9.78 0.00 29.68 3.51
4296 6878 2.116533 TTAGCGGCGGATCGACTGA 61.117 57.895 9.78 0.00 29.68 3.41
4297 6879 1.452953 TTAGCGGCGGATCGACTGAT 61.453 55.000 9.78 0.00 37.60 2.90
4375 6957 2.479560 GCTATTGCCGGGTGTCAATTTC 60.480 50.000 2.18 0.00 34.95 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.104965 CCATTCACGAATAGGTGTATTTCTAAA 57.895 33.333 0.00 0.00 39.00 1.85
11 12 8.479689 TCCATTCACGAATAGGTGTATTTCTAA 58.520 33.333 0.00 0.00 39.00 2.10
12 13 8.014070 TCCATTCACGAATAGGTGTATTTCTA 57.986 34.615 0.00 0.00 39.00 2.10
13 14 6.884832 TCCATTCACGAATAGGTGTATTTCT 58.115 36.000 0.00 0.00 39.00 2.52
14 15 6.202954 CCTCCATTCACGAATAGGTGTATTTC 59.797 42.308 0.00 0.00 39.00 2.17
15 16 6.055588 CCTCCATTCACGAATAGGTGTATTT 58.944 40.000 0.00 0.00 39.00 1.40
16 17 5.365605 TCCTCCATTCACGAATAGGTGTATT 59.634 40.000 7.97 0.00 39.00 1.89
17 18 4.899457 TCCTCCATTCACGAATAGGTGTAT 59.101 41.667 7.97 0.00 39.00 2.29
18 19 4.283337 TCCTCCATTCACGAATAGGTGTA 58.717 43.478 7.97 0.00 39.00 2.90
19 20 3.104512 TCCTCCATTCACGAATAGGTGT 58.895 45.455 7.97 0.00 39.00 4.16
20 21 3.819564 TCCTCCATTCACGAATAGGTG 57.180 47.619 7.97 6.14 39.29 4.00
21 22 4.837093 TTTCCTCCATTCACGAATAGGT 57.163 40.909 7.97 0.00 31.53 3.08
22 23 4.941263 TGTTTTCCTCCATTCACGAATAGG 59.059 41.667 0.00 3.16 31.04 2.57
23 24 5.869350 GTGTTTTCCTCCATTCACGAATAG 58.131 41.667 0.00 0.00 0.00 1.73
24 25 5.873179 GTGTTTTCCTCCATTCACGAATA 57.127 39.130 0.00 0.00 0.00 1.75
25 26 4.766404 GTGTTTTCCTCCATTCACGAAT 57.234 40.909 0.00 0.00 0.00 3.34
28 29 1.399727 GCGTGTTTTCCTCCATTCACG 60.400 52.381 10.41 10.41 46.97 4.35
29 30 1.606668 TGCGTGTTTTCCTCCATTCAC 59.393 47.619 0.00 0.00 0.00 3.18
30 31 1.974265 TGCGTGTTTTCCTCCATTCA 58.026 45.000 0.00 0.00 0.00 2.57
31 32 2.867429 CATGCGTGTTTTCCTCCATTC 58.133 47.619 0.00 0.00 0.00 2.67
32 33 1.067635 GCATGCGTGTTTTCCTCCATT 60.068 47.619 0.00 0.00 0.00 3.16
33 34 0.527565 GCATGCGTGTTTTCCTCCAT 59.472 50.000 0.00 0.00 0.00 3.41
34 35 0.821301 TGCATGCGTGTTTTCCTCCA 60.821 50.000 14.09 0.00 0.00 3.86
35 36 0.313672 TTGCATGCGTGTTTTCCTCC 59.686 50.000 14.09 0.00 0.00 4.30
36 37 2.352503 ATTGCATGCGTGTTTTCCTC 57.647 45.000 14.09 0.00 0.00 3.71
37 38 2.818130 AATTGCATGCGTGTTTTCCT 57.182 40.000 14.09 0.00 0.00 3.36
38 39 4.981389 TTAAATTGCATGCGTGTTTTCC 57.019 36.364 14.09 0.00 0.00 3.13
39 40 7.068341 TGATTTTAAATTGCATGCGTGTTTTC 58.932 30.769 14.09 8.48 0.00 2.29
40 41 6.952743 TGATTTTAAATTGCATGCGTGTTTT 58.047 28.000 14.09 11.84 0.00 2.43
41 42 6.536731 TGATTTTAAATTGCATGCGTGTTT 57.463 29.167 14.09 15.16 0.00 2.83
42 43 6.536731 TTGATTTTAAATTGCATGCGTGTT 57.463 29.167 14.09 8.88 0.00 3.32
43 44 6.361899 GTTTGATTTTAAATTGCATGCGTGT 58.638 32.000 14.09 1.74 0.00 4.49
44 45 5.789512 GGTTTGATTTTAAATTGCATGCGTG 59.210 36.000 14.09 0.09 0.00 5.34
45 46 5.468072 TGGTTTGATTTTAAATTGCATGCGT 59.532 32.000 14.09 0.67 0.00 5.24
46 47 5.789512 GTGGTTTGATTTTAAATTGCATGCG 59.210 36.000 14.09 0.00 0.00 4.73
47 48 6.666417 TGTGGTTTGATTTTAAATTGCATGC 58.334 32.000 11.82 11.82 0.00 4.06
48 49 9.680315 ATTTGTGGTTTGATTTTAAATTGCATG 57.320 25.926 0.00 0.00 0.00 4.06
49 50 9.680315 CATTTGTGGTTTGATTTTAAATTGCAT 57.320 25.926 0.00 0.00 0.00 3.96
50 51 8.680903 ACATTTGTGGTTTGATTTTAAATTGCA 58.319 25.926 0.00 0.00 0.00 4.08
63 64 9.906660 ACACATTATTAGTACATTTGTGGTTTG 57.093 29.630 0.00 0.00 37.80 2.93
121 122 9.554395 TGCTCGTTGAATCCATATTATAAAAGA 57.446 29.630 0.00 0.00 0.00 2.52
122 123 9.817365 CTGCTCGTTGAATCCATATTATAAAAG 57.183 33.333 0.00 0.00 0.00 2.27
123 124 9.337396 ACTGCTCGTTGAATCCATATTATAAAA 57.663 29.630 0.00 0.00 0.00 1.52
124 125 8.902540 ACTGCTCGTTGAATCCATATTATAAA 57.097 30.769 0.00 0.00 0.00 1.40
125 126 9.419297 GTACTGCTCGTTGAATCCATATTATAA 57.581 33.333 0.00 0.00 0.00 0.98
126 127 8.581578 TGTACTGCTCGTTGAATCCATATTATA 58.418 33.333 0.00 0.00 0.00 0.98
127 128 7.441836 TGTACTGCTCGTTGAATCCATATTAT 58.558 34.615 0.00 0.00 0.00 1.28
128 129 6.811954 TGTACTGCTCGTTGAATCCATATTA 58.188 36.000 0.00 0.00 0.00 0.98
129 130 5.670485 TGTACTGCTCGTTGAATCCATATT 58.330 37.500 0.00 0.00 0.00 1.28
130 131 5.276461 TGTACTGCTCGTTGAATCCATAT 57.724 39.130 0.00 0.00 0.00 1.78
131 132 4.729227 TGTACTGCTCGTTGAATCCATA 57.271 40.909 0.00 0.00 0.00 2.74
132 133 3.610040 TGTACTGCTCGTTGAATCCAT 57.390 42.857 0.00 0.00 0.00 3.41
133 134 3.610040 ATGTACTGCTCGTTGAATCCA 57.390 42.857 0.00 0.00 0.00 3.41
134 135 3.684788 ACAATGTACTGCTCGTTGAATCC 59.315 43.478 10.19 0.00 36.19 3.01
135 136 4.928661 ACAATGTACTGCTCGTTGAATC 57.071 40.909 10.19 0.00 36.19 2.52
136 137 6.985188 ATAACAATGTACTGCTCGTTGAAT 57.015 33.333 10.19 3.32 36.19 2.57
137 138 9.758651 ATATATAACAATGTACTGCTCGTTGAA 57.241 29.630 10.19 1.68 36.19 2.69
166 167 8.739039 CCAAAAGTTAGATTGACCATATGTGAA 58.261 33.333 1.24 0.00 0.00 3.18
167 168 7.888021 ACCAAAAGTTAGATTGACCATATGTGA 59.112 33.333 1.24 0.00 0.00 3.58
168 169 8.055279 ACCAAAAGTTAGATTGACCATATGTG 57.945 34.615 1.24 0.00 0.00 3.21
169 170 7.339466 GGACCAAAAGTTAGATTGACCATATGT 59.661 37.037 1.24 0.00 0.00 2.29
170 171 7.339212 TGGACCAAAAGTTAGATTGACCATATG 59.661 37.037 0.00 0.00 32.40 1.78
171 172 7.410174 TGGACCAAAAGTTAGATTGACCATAT 58.590 34.615 0.00 0.00 32.40 1.78
172 173 6.785076 TGGACCAAAAGTTAGATTGACCATA 58.215 36.000 0.00 0.00 32.40 2.74
173 174 5.640147 TGGACCAAAAGTTAGATTGACCAT 58.360 37.500 0.00 0.00 32.40 3.55
174 175 5.055265 TGGACCAAAAGTTAGATTGACCA 57.945 39.130 0.00 0.00 33.74 4.02
175 176 6.399639 TTTGGACCAAAAGTTAGATTGACC 57.600 37.500 17.47 0.00 29.89 4.02
190 191 8.877779 CGCATTTCAAAATTATATTTTGGACCA 58.122 29.630 19.22 0.00 39.25 4.02
191 192 8.878769 ACGCATTTCAAAATTATATTTTGGACC 58.121 29.630 19.22 6.41 39.25 4.46
192 193 9.687717 CACGCATTTCAAAATTATATTTTGGAC 57.312 29.630 19.22 4.49 39.25 4.02
193 194 8.386606 GCACGCATTTCAAAATTATATTTTGGA 58.613 29.630 19.22 11.76 39.25 3.53
194 195 7.639461 GGCACGCATTTCAAAATTATATTTTGG 59.361 33.333 19.22 8.75 39.25 3.28
195 196 8.532408 GGCACGCATTTCAAAATTATATTTTG 57.468 30.769 15.34 15.34 39.90 2.44
216 217 2.759560 AATGAATGGGCCCGGCAC 60.760 61.111 19.37 8.63 0.00 5.01
217 218 2.759149 CAATGAATGGGCCCGGCA 60.759 61.111 19.37 15.54 0.00 5.69
218 219 3.539791 CCAATGAATGGGCCCGGC 61.540 66.667 19.37 9.52 46.27 6.13
226 227 9.489084 AGCATATGATTTCAATTCCAATGAATG 57.511 29.630 6.97 0.00 40.34 2.67
228 229 9.893634 AAAGCATATGATTTCAATTCCAATGAA 57.106 25.926 13.06 0.00 35.11 2.57
229 230 9.320352 CAAAGCATATGATTTCAATTCCAATGA 57.680 29.630 15.79 0.00 30.39 2.57
230 231 8.556194 CCAAAGCATATGATTTCAATTCCAATG 58.444 33.333 15.79 2.29 30.39 2.82
231 232 8.487848 TCCAAAGCATATGATTTCAATTCCAAT 58.512 29.630 15.79 0.00 30.39 3.16
232 233 7.849160 TCCAAAGCATATGATTTCAATTCCAA 58.151 30.769 15.79 0.00 30.39 3.53
233 234 7.421087 TCCAAAGCATATGATTTCAATTCCA 57.579 32.000 15.79 0.00 30.39 3.53
234 235 8.897872 ATTCCAAAGCATATGATTTCAATTCC 57.102 30.769 15.79 0.00 30.39 3.01
248 249 9.791801 AGTTTTTGGTTAAATATTCCAAAGCAT 57.208 25.926 15.55 6.91 46.91 3.79
289 290 9.394477 GGAAAGTGTTAGTTTTATGTCATGTTC 57.606 33.333 0.00 0.00 0.00 3.18
293 294 7.972832 TCGGAAAGTGTTAGTTTTATGTCAT 57.027 32.000 0.00 0.00 0.00 3.06
299 300 7.432838 GCACAAAATCGGAAAGTGTTAGTTTTA 59.567 33.333 0.00 0.00 32.99 1.52
307 308 2.399396 CGCACAAAATCGGAAAGTGT 57.601 45.000 0.00 0.00 32.99 3.55
314 315 2.415697 AGTTTTCCGCACAAAATCGG 57.584 45.000 0.00 0.00 46.52 4.18
335 336 4.004982 GCCACGGATTAGGACAAAAGTAA 58.995 43.478 0.00 0.00 0.00 2.24
336 337 3.008157 TGCCACGGATTAGGACAAAAGTA 59.992 43.478 0.00 0.00 0.00 2.24
364 365 1.403780 CCGGTTTCGAGACTTGGTAGG 60.404 57.143 6.02 0.00 39.00 3.18
420 421 1.327303 GCACCTGAAACATGGAACCA 58.673 50.000 0.00 0.00 0.00 3.67
424 425 0.888736 CGTGGCACCTGAAACATGGA 60.889 55.000 12.86 0.00 0.00 3.41
529 530 1.064463 ACATCAAATGGCCGGTCTCAT 60.064 47.619 7.97 4.34 33.60 2.90
532 533 1.176527 CAACATCAAATGGCCGGTCT 58.823 50.000 7.97 0.00 33.60 3.85
744 746 8.373048 ACGTGACAGAAAACAATCACTTTATA 57.627 30.769 0.00 0.00 39.45 0.98
745 747 7.259290 ACGTGACAGAAAACAATCACTTTAT 57.741 32.000 0.00 0.00 39.45 1.40
755 757 2.094575 CACCGAAACGTGACAGAAAACA 59.905 45.455 0.00 0.00 35.68 2.83
773 775 8.705048 TTTAACAAAAACTACCACATTTCACC 57.295 30.769 0.00 0.00 0.00 4.02
821 824 1.678101 AGATCAAAATTAGGGCGCTGC 59.322 47.619 14.51 0.00 0.00 5.25
843 846 4.585162 CCGGGTCAGTTATGAAGTCTATCT 59.415 45.833 0.00 0.00 37.14 1.98
844 847 4.583489 TCCGGGTCAGTTATGAAGTCTATC 59.417 45.833 0.00 0.00 37.14 2.08
858 864 0.902531 ATAACCACACTCCGGGTCAG 59.097 55.000 0.00 0.00 36.05 3.51
862 868 4.812626 GTGTTTATATAACCACACTCCGGG 59.187 45.833 15.93 0.00 37.21 5.73
872 878 4.748600 GGTGGAGCTCGTGTTTATATAACC 59.251 45.833 7.83 0.00 0.00 2.85
895 902 6.234177 GGGAGGAATATTGTAGACCATTCTG 58.766 44.000 0.00 0.00 32.75 3.02
901 908 2.289506 GGCGGGAGGAATATTGTAGACC 60.290 54.545 0.00 0.00 0.00 3.85
910 917 2.365901 AACGGGGCGGGAGGAATA 60.366 61.111 0.00 0.00 0.00 1.75
1005 1012 4.171103 GGCCGGCCACGATAACCT 62.171 66.667 40.73 0.00 44.60 3.50
1179 1198 1.814793 TTATGCTAAGTTGCACCGCA 58.185 45.000 0.00 0.00 46.33 5.69
1192 1211 7.094463 GGATTCGATTTGATCAAGGATTATGCT 60.094 37.037 8.41 0.00 0.00 3.79
1197 1216 4.829492 GGGGATTCGATTTGATCAAGGATT 59.171 41.667 8.41 4.65 0.00 3.01
1213 1232 6.220201 CGAAGAGAGATAGAAAAGGGGATTC 58.780 44.000 0.00 0.00 0.00 2.52
1214 1233 5.071115 CCGAAGAGAGATAGAAAAGGGGATT 59.929 44.000 0.00 0.00 0.00 3.01
1215 1234 4.591072 CCGAAGAGAGATAGAAAAGGGGAT 59.409 45.833 0.00 0.00 0.00 3.85
1218 1237 3.133003 TGCCGAAGAGAGATAGAAAAGGG 59.867 47.826 0.00 0.00 0.00 3.95
1219 1238 4.367450 CTGCCGAAGAGAGATAGAAAAGG 58.633 47.826 0.00 0.00 0.00 3.11
1221 1240 3.769844 ACCTGCCGAAGAGAGATAGAAAA 59.230 43.478 0.00 0.00 0.00 2.29
1222 1241 3.131223 CACCTGCCGAAGAGAGATAGAAA 59.869 47.826 0.00 0.00 0.00 2.52
1234 1253 0.107703 CAGCTATTCCACCTGCCGAA 60.108 55.000 0.00 0.00 0.00 4.30
1248 1267 1.134699 CAGGCGAAGTGATTCCAGCTA 60.135 52.381 0.00 0.00 0.00 3.32
1308 1327 0.681564 AGGGACTACGAGGTCAGCTG 60.682 60.000 7.63 7.63 36.02 4.24
1315 1334 1.550976 AGAAGCAAAGGGACTACGAGG 59.449 52.381 0.00 0.00 38.49 4.63
1318 1337 6.592607 TGTAAATAAGAAGCAAAGGGACTACG 59.407 38.462 0.00 0.00 38.49 3.51
1319 1338 7.916914 TGTAAATAAGAAGCAAAGGGACTAC 57.083 36.000 0.00 0.00 38.49 2.73
1345 1364 9.956640 ACAGTTCAACAGTATACTACTACTACT 57.043 33.333 4.74 2.95 37.23 2.57
1347 1366 9.388506 GGACAGTTCAACAGTATACTACTACTA 57.611 37.037 4.74 0.00 37.23 1.82
1348 1367 7.338957 GGGACAGTTCAACAGTATACTACTACT 59.661 40.741 4.74 2.77 37.23 2.57
1349 1368 7.121759 TGGGACAGTTCAACAGTATACTACTAC 59.878 40.741 4.74 3.51 37.23 2.73
1350 1369 7.177184 TGGGACAGTTCAACAGTATACTACTA 58.823 38.462 4.74 0.00 37.23 1.82
1351 1370 6.014647 TGGGACAGTTCAACAGTATACTACT 58.985 40.000 4.74 2.15 40.28 2.57
1352 1371 6.276832 TGGGACAGTTCAACAGTATACTAC 57.723 41.667 4.74 0.00 0.00 2.73
1412 1445 5.221342 GGCTGCTCAAGTAGACATACATAGT 60.221 44.000 0.00 0.00 35.71 2.12
1413 1446 5.226396 GGCTGCTCAAGTAGACATACATAG 58.774 45.833 0.00 0.00 35.71 2.23
1507 1540 0.752009 AAGCGAGGGCGTATGAGAGA 60.752 55.000 0.00 0.00 46.35 3.10
1536 1572 1.066002 CAAACAGGGAAGCACACACAG 59.934 52.381 0.00 0.00 0.00 3.66
1556 1592 6.592166 TCACGTAAAATATTTCGTCCAACAC 58.408 36.000 10.90 0.00 40.01 3.32
1559 1595 7.598189 TCATCACGTAAAATATTTCGTCCAA 57.402 32.000 10.90 2.91 40.01 3.53
1560 1596 7.598189 TTCATCACGTAAAATATTTCGTCCA 57.402 32.000 10.90 3.54 40.01 4.02
1561 1597 9.155053 GATTTCATCACGTAAAATATTTCGTCC 57.845 33.333 10.90 0.00 40.01 4.79
1564 1602 8.965905 TCGATTTCATCACGTAAAATATTTCG 57.034 30.769 0.10 4.53 35.70 3.46
1650 1689 1.309950 CCCAGCAATCATCTGCAGAG 58.690 55.000 22.96 13.90 45.18 3.35
1725 1767 3.068732 CAGTCCAGAAGAGTGTTCAGACA 59.931 47.826 19.03 0.00 40.54 3.41
1743 1785 3.309138 GTGACAGATGATCATGTGCAGTC 59.691 47.826 27.76 19.54 35.71 3.51
1745 1787 3.063588 GTGTGACAGATGATCATGTGCAG 59.936 47.826 27.76 9.49 35.71 4.41
1746 1788 3.004862 GTGTGACAGATGATCATGTGCA 58.995 45.455 27.76 22.89 35.71 4.57
1747 1789 3.004862 TGTGTGACAGATGATCATGTGC 58.995 45.455 27.76 21.02 35.71 4.57
1748 1790 4.634443 ACATGTGTGACAGATGATCATGTG 59.366 41.667 26.65 26.59 41.39 3.21
1750 1792 5.813080 AACATGTGTGACAGATGATCATG 57.187 39.130 26.65 17.41 37.32 3.07
1753 1816 6.037940 AGCATAAACATGTGTGACAGATGATC 59.962 38.462 26.65 5.66 37.32 2.92
1757 1820 4.142534 GCAGCATAAACATGTGTGACAGAT 60.143 41.667 0.00 0.00 0.00 2.90
1763 1826 2.256174 GCAGCAGCATAAACATGTGTG 58.744 47.619 0.00 0.04 41.58 3.82
1764 1827 2.642139 GCAGCAGCATAAACATGTGT 57.358 45.000 0.00 0.00 41.58 3.72
1818 1881 1.429148 CGAGTGCCTTTATCCCGTGC 61.429 60.000 0.00 0.00 0.00 5.34
1906 1969 2.503871 GTCACAGCTTACTACGACGAC 58.496 52.381 0.00 0.00 0.00 4.34
1907 1970 1.127397 CGTCACAGCTTACTACGACGA 59.873 52.381 0.00 0.00 45.59 4.20
1908 1971 1.521411 CGTCACAGCTTACTACGACG 58.479 55.000 0.00 0.00 40.89 5.12
1938 2004 9.823098 CTTCACACAAAATTAAGATCAGAGAAG 57.177 33.333 0.00 0.00 0.00 2.85
1951 2017 7.596248 GCATGTCTTGTATCTTCACACAAAATT 59.404 33.333 0.00 0.00 34.43 1.82
1952 2018 7.086376 GCATGTCTTGTATCTTCACACAAAAT 58.914 34.615 0.00 0.00 34.43 1.82
2034 2100 0.467384 ATCAATCGCTCACCCAGGAG 59.533 55.000 0.00 0.00 37.97 3.69
2050 2116 6.660521 AGAGATATGCACAAGTTTTGGAATCA 59.339 34.615 0.00 0.00 34.12 2.57
2054 2120 5.559770 TCAGAGATATGCACAAGTTTTGGA 58.440 37.500 0.00 0.00 34.12 3.53
2056 2122 6.745907 CACATCAGAGATATGCACAAGTTTTG 59.254 38.462 0.00 0.00 0.00 2.44
2057 2123 6.432162 ACACATCAGAGATATGCACAAGTTTT 59.568 34.615 0.00 0.00 0.00 2.43
2058 2124 5.942236 ACACATCAGAGATATGCACAAGTTT 59.058 36.000 0.00 0.00 0.00 2.66
2059 2125 5.494724 ACACATCAGAGATATGCACAAGTT 58.505 37.500 0.00 0.00 0.00 2.66
2065 2148 6.822667 ACAAAAACACATCAGAGATATGCA 57.177 33.333 0.00 0.00 0.00 3.96
2126 2210 2.999355 GTCGTACTTGAGGTAGTCGACT 59.001 50.000 23.66 23.66 40.86 4.18
2127 2211 2.738846 TGTCGTACTTGAGGTAGTCGAC 59.261 50.000 7.70 7.70 42.38 4.20
2222 2306 2.290577 GCAGAGGTTGAAGAAGATGGGT 60.291 50.000 0.00 0.00 0.00 4.51
2328 2429 2.747855 GCCGGCAAGGACAAGAGG 60.748 66.667 24.80 0.00 45.00 3.69
2397 2498 0.037326 TTCTCCAGCTGTTGCCGTAG 60.037 55.000 13.81 0.00 40.80 3.51
2430 2531 2.452116 CCTGTTCCAGGTGTCCTCA 58.548 57.895 1.99 0.00 45.82 3.86
2451 2552 1.605753 GGGAAACGGGCCAAGATATC 58.394 55.000 4.39 0.00 0.00 1.63
2459 2562 2.579657 CCAAAAGGGGAAACGGGCC 61.580 63.158 0.00 0.00 0.00 5.80
2485 2588 2.672307 AGAGTTGCAGCAGCCAGC 60.672 61.111 5.49 0.49 46.19 4.85
2486 2589 1.575576 GACAGAGTTGCAGCAGCCAG 61.576 60.000 5.49 0.00 41.13 4.85
2487 2590 1.598962 GACAGAGTTGCAGCAGCCA 60.599 57.895 5.49 0.00 41.13 4.75
2488 2591 0.959372 ATGACAGAGTTGCAGCAGCC 60.959 55.000 5.49 0.00 41.13 4.85
2489 2592 0.879765 AATGACAGAGTTGCAGCAGC 59.120 50.000 2.55 0.00 42.57 5.25
2505 2608 6.038382 CCATTCTCCTCTGAACAATCTGAATG 59.962 42.308 0.00 0.00 38.41 2.67
2650 2753 4.895889 AGATAAGACGAGTCCATCCATGAA 59.104 41.667 0.00 0.00 0.00 2.57
2665 2768 5.842907 ACCAAAAACAAGCCAAGATAAGAC 58.157 37.500 0.00 0.00 0.00 3.01
2798 5309 4.263018 TCAGTGACTGACCTTTGAGATG 57.737 45.455 11.93 0.00 35.39 2.90
2877 5392 1.949847 ATCCAGCAGAGACGGTTCGG 61.950 60.000 0.00 0.00 0.00 4.30
2999 5514 1.092345 GCGCAAGGGGATCTGAAGAC 61.092 60.000 0.30 0.00 38.28 3.01
3006 5521 1.372087 CTGACAAGCGCAAGGGGATC 61.372 60.000 11.47 0.00 38.28 3.36
3008 5523 2.032528 CTGACAAGCGCAAGGGGA 59.967 61.111 11.47 0.00 38.28 4.81
3009 5524 1.856265 GAACTGACAAGCGCAAGGGG 61.856 60.000 11.47 0.00 38.28 4.79
3017 5533 2.035442 GGAGCCCGAACTGACAAGC 61.035 63.158 0.00 0.00 0.00 4.01
3019 5535 2.747686 GGGAGCCCGAACTGACAA 59.252 61.111 0.00 0.00 0.00 3.18
3044 5560 1.735198 CCTGCTGGCAATGCAAACG 60.735 57.895 7.79 0.00 40.13 3.60
3051 5567 0.896940 CAGTTCACCCTGCTGGCAAT 60.897 55.000 3.63 0.00 37.83 3.56
3055 5571 0.742281 CGATCAGTTCACCCTGCTGG 60.742 60.000 1.89 1.89 41.37 4.85
3058 5574 0.741221 GGTCGATCAGTTCACCCTGC 60.741 60.000 0.00 0.00 32.32 4.85
3060 5576 0.898789 ACGGTCGATCAGTTCACCCT 60.899 55.000 0.00 0.00 0.00 4.34
3061 5577 0.736325 CACGGTCGATCAGTTCACCC 60.736 60.000 0.00 0.00 0.00 4.61
3062 5578 0.736325 CCACGGTCGATCAGTTCACC 60.736 60.000 0.00 0.00 0.00 4.02
3064 5580 1.080093 GCCACGGTCGATCAGTTCA 60.080 57.895 0.00 0.00 0.00 3.18
3065 5581 2.158959 CGCCACGGTCGATCAGTTC 61.159 63.158 0.00 0.00 0.00 3.01
3076 5600 0.945813 TAAACCAAGAAACGCCACGG 59.054 50.000 0.00 0.00 0.00 4.94
3110 5634 2.118403 TCCTCACTTTCTTCCCCTGT 57.882 50.000 0.00 0.00 0.00 4.00
3159 5683 3.418068 GAGAGTGCAGTGCGGTGC 61.418 66.667 11.20 3.18 44.27 5.01
3160 5684 2.740055 GGAGAGTGCAGTGCGGTG 60.740 66.667 11.20 0.00 0.00 4.94
3161 5685 4.363990 CGGAGAGTGCAGTGCGGT 62.364 66.667 11.20 0.00 0.00 5.68
3162 5686 2.004808 TATCGGAGAGTGCAGTGCGG 62.005 60.000 11.20 0.00 43.63 5.69
3163 5687 0.179137 TTATCGGAGAGTGCAGTGCG 60.179 55.000 11.20 0.00 43.63 5.34
3185 5709 2.414138 GGTTTACGATGTGGGAAGTTCG 59.586 50.000 0.00 0.00 37.60 3.95
3204 5728 2.741878 CGGTTCAGTCACAGTTCTTGGT 60.742 50.000 0.00 0.00 0.00 3.67
3216 5740 2.736144 TACCACATCACGGTTCAGTC 57.264 50.000 0.00 0.00 37.99 3.51
3224 5748 2.345876 TCTGTTGCATACCACATCACG 58.654 47.619 0.00 0.00 0.00 4.35
3406 5938 1.662517 TTCTGTTTGCTTGCTGACGA 58.337 45.000 0.00 0.00 0.00 4.20
3409 5941 3.016031 TCTGTTTCTGTTTGCTTGCTGA 58.984 40.909 0.00 0.00 0.00 4.26
3411 5943 2.223340 CGTCTGTTTCTGTTTGCTTGCT 60.223 45.455 0.00 0.00 0.00 3.91
3413 5945 2.719798 CCGTCTGTTTCTGTTTGCTTG 58.280 47.619 0.00 0.00 0.00 4.01
3414 5946 1.065551 GCCGTCTGTTTCTGTTTGCTT 59.934 47.619 0.00 0.00 0.00 3.91
3416 5948 0.380378 TGCCGTCTGTTTCTGTTTGC 59.620 50.000 0.00 0.00 0.00 3.68
3420 5952 0.396435 TCCATGCCGTCTGTTTCTGT 59.604 50.000 0.00 0.00 0.00 3.41
3422 5954 1.278985 TCATCCATGCCGTCTGTTTCT 59.721 47.619 0.00 0.00 0.00 2.52
3423 5955 1.737838 TCATCCATGCCGTCTGTTTC 58.262 50.000 0.00 0.00 0.00 2.78
3424 5956 2.198827 TTCATCCATGCCGTCTGTTT 57.801 45.000 0.00 0.00 0.00 2.83
3465 5997 1.728971 CTGCGGCAACAACAACAAAAA 59.271 42.857 3.44 0.00 0.00 1.94
3466 5998 1.354040 CTGCGGCAACAACAACAAAA 58.646 45.000 3.44 0.00 0.00 2.44
3467 5999 1.080995 GCTGCGGCAACAACAACAAA 61.081 50.000 14.08 0.00 38.54 2.83
3470 6002 2.103934 TGCTGCGGCAACAACAAC 59.896 55.556 20.23 0.00 46.36 3.32
3501 6033 1.197721 CATCTTGTCCGTGAACTTGGC 59.802 52.381 0.00 0.00 0.00 4.52
3587 6119 4.517453 TCAACCCATGTCGTTTTTCCTTAG 59.483 41.667 0.00 0.00 0.00 2.18
3621 6154 7.004691 AGTAGCAGGGGGAAAATGTATATTTC 58.995 38.462 0.00 0.00 35.50 2.17
3626 6159 4.478686 AGAAGTAGCAGGGGGAAAATGTAT 59.521 41.667 0.00 0.00 0.00 2.29
3628 6161 2.649816 AGAAGTAGCAGGGGGAAAATGT 59.350 45.455 0.00 0.00 0.00 2.71
3631 6164 5.530176 AAATAGAAGTAGCAGGGGGAAAA 57.470 39.130 0.00 0.00 0.00 2.29
3632 6165 5.530176 AAAATAGAAGTAGCAGGGGGAAA 57.470 39.130 0.00 0.00 0.00 3.13
3633 6166 5.530176 AAAAATAGAAGTAGCAGGGGGAA 57.470 39.130 0.00 0.00 0.00 3.97
3653 6186 6.063404 ACCACTTCCAAACTATTACGGAAAA 58.937 36.000 0.00 0.00 37.10 2.29
3665 6217 3.794564 CACGCTAAAAACCACTTCCAAAC 59.205 43.478 0.00 0.00 0.00 2.93
3672 6224 9.752961 AAAAATTATTACACGCTAAAAACCACT 57.247 25.926 0.00 0.00 0.00 4.00
3709 6262 8.192774 GCATGGTACTACTTATTACACACACTA 58.807 37.037 0.00 0.00 0.00 2.74
3710 6263 7.039882 GCATGGTACTACTTATTACACACACT 58.960 38.462 0.00 0.00 0.00 3.55
3711 6264 6.814644 TGCATGGTACTACTTATTACACACAC 59.185 38.462 0.00 0.00 0.00 3.82
3712 6265 6.937392 TGCATGGTACTACTTATTACACACA 58.063 36.000 0.00 0.00 0.00 3.72
3725 6280 1.143838 CGCCTGCTGCATGGTACTA 59.856 57.895 1.31 0.00 41.33 1.82
3726 6281 2.124983 CGCCTGCTGCATGGTACT 60.125 61.111 1.31 0.00 41.33 2.73
3727 6282 3.880846 GCGCCTGCTGCATGGTAC 61.881 66.667 1.31 0.44 41.33 3.34
3738 6293 2.855728 GAAATTGCTCACCGCGCCTG 62.856 60.000 0.00 0.00 43.27 4.85
3739 6294 2.672996 AAATTGCTCACCGCGCCT 60.673 55.556 0.00 0.00 43.27 5.52
3740 6295 2.202479 GAAATTGCTCACCGCGCC 60.202 61.111 0.00 0.00 43.27 6.53
3741 6296 2.202479 GGAAATTGCTCACCGCGC 60.202 61.111 0.00 0.00 43.27 6.86
3742 6297 0.039617 TTTGGAAATTGCTCACCGCG 60.040 50.000 0.00 0.00 43.27 6.46
3743 6298 2.262211 GATTTGGAAATTGCTCACCGC 58.738 47.619 0.00 0.00 39.77 5.68
3744 6299 3.574284 TGATTTGGAAATTGCTCACCG 57.426 42.857 0.00 0.00 0.00 4.94
3745 6300 6.806388 AAAATGATTTGGAAATTGCTCACC 57.194 33.333 0.00 0.00 0.00 4.02
3829 6384 9.868277 AGTTGTTTATGTTGATGTCAAAAGAAA 57.132 25.926 2.47 2.47 37.63 2.52
3832 6387 9.950680 ACTAGTTGTTTATGTTGATGTCAAAAG 57.049 29.630 0.00 0.00 37.63 2.27
3833 6388 9.944663 GACTAGTTGTTTATGTTGATGTCAAAA 57.055 29.630 0.00 0.00 37.63 2.44
3834 6389 9.114952 TGACTAGTTGTTTATGTTGATGTCAAA 57.885 29.630 0.00 0.00 37.63 2.69
3835 6390 8.556194 GTGACTAGTTGTTTATGTTGATGTCAA 58.444 33.333 0.00 0.00 32.56 3.18
3836 6391 7.931407 AGTGACTAGTTGTTTATGTTGATGTCA 59.069 33.333 0.00 0.00 0.00 3.58
3837 6392 8.311650 AGTGACTAGTTGTTTATGTTGATGTC 57.688 34.615 0.00 0.00 0.00 3.06
3838 6393 8.559536 CAAGTGACTAGTTGTTTATGTTGATGT 58.440 33.333 0.00 0.00 33.47 3.06
3839 6394 8.559536 ACAAGTGACTAGTTGTTTATGTTGATG 58.440 33.333 0.00 0.00 45.76 3.07
3840 6395 8.559536 CACAAGTGACTAGTTGTTTATGTTGAT 58.440 33.333 0.00 0.00 45.76 2.57
3841 6396 7.766738 TCACAAGTGACTAGTTGTTTATGTTGA 59.233 33.333 0.00 0.00 45.76 3.18
3842 6397 7.915508 TCACAAGTGACTAGTTGTTTATGTTG 58.084 34.615 0.00 0.00 45.76 3.33
3843 6398 7.226720 CCTCACAAGTGACTAGTTGTTTATGTT 59.773 37.037 0.00 0.00 45.76 2.71
3844 6399 6.706270 CCTCACAAGTGACTAGTTGTTTATGT 59.294 38.462 0.00 0.00 45.76 2.29
3845 6400 6.706270 ACCTCACAAGTGACTAGTTGTTTATG 59.294 38.462 0.00 0.00 45.76 1.90
3846 6401 6.827727 ACCTCACAAGTGACTAGTTGTTTAT 58.172 36.000 0.00 0.00 45.76 1.40
3847 6402 6.127281 TGACCTCACAAGTGACTAGTTGTTTA 60.127 38.462 0.00 0.00 45.76 2.01
3848 6403 5.099042 ACCTCACAAGTGACTAGTTGTTT 57.901 39.130 0.00 0.00 45.76 2.83
3849 6404 4.161565 TGACCTCACAAGTGACTAGTTGTT 59.838 41.667 0.00 0.00 45.76 2.83
3851 6406 4.322080 TGACCTCACAAGTGACTAGTTG 57.678 45.455 0.00 0.00 41.90 3.16
3852 6407 5.186021 CCTATGACCTCACAAGTGACTAGTT 59.814 44.000 0.00 0.00 35.46 2.24
3853 6408 4.707448 CCTATGACCTCACAAGTGACTAGT 59.293 45.833 0.00 0.00 35.46 2.57
3854 6409 4.440802 GCCTATGACCTCACAAGTGACTAG 60.441 50.000 0.00 0.00 35.46 2.57
3855 6410 3.447586 GCCTATGACCTCACAAGTGACTA 59.552 47.826 0.00 0.00 35.46 2.59
3856 6411 2.234908 GCCTATGACCTCACAAGTGACT 59.765 50.000 0.00 0.00 35.46 3.41
3857 6412 2.234908 AGCCTATGACCTCACAAGTGAC 59.765 50.000 0.00 0.00 35.46 3.67
3858 6413 2.540383 AGCCTATGACCTCACAAGTGA 58.460 47.619 2.56 2.56 38.06 3.41
3859 6414 3.340814 AAGCCTATGACCTCACAAGTG 57.659 47.619 0.00 0.00 0.00 3.16
3860 6415 3.617531 CGAAAGCCTATGACCTCACAAGT 60.618 47.826 0.00 0.00 0.00 3.16
3861 6416 2.932614 CGAAAGCCTATGACCTCACAAG 59.067 50.000 0.00 0.00 0.00 3.16
3862 6417 2.301870 ACGAAAGCCTATGACCTCACAA 59.698 45.455 0.00 0.00 0.00 3.33
3863 6418 1.899814 ACGAAAGCCTATGACCTCACA 59.100 47.619 0.00 0.00 0.00 3.58
3864 6419 2.674796 ACGAAAGCCTATGACCTCAC 57.325 50.000 0.00 0.00 0.00 3.51
3865 6420 3.596214 GAAACGAAAGCCTATGACCTCA 58.404 45.455 0.00 0.00 0.00 3.86
3866 6421 2.603560 CGAAACGAAAGCCTATGACCTC 59.396 50.000 0.00 0.00 0.00 3.85
3867 6422 2.232941 TCGAAACGAAAGCCTATGACCT 59.767 45.455 0.00 0.00 31.06 3.85
3868 6423 2.347755 GTCGAAACGAAAGCCTATGACC 59.652 50.000 0.00 0.00 37.72 4.02
3869 6424 2.991190 TGTCGAAACGAAAGCCTATGAC 59.009 45.455 0.00 0.00 37.72 3.06
3870 6425 2.991190 GTGTCGAAACGAAAGCCTATGA 59.009 45.455 0.00 0.00 37.72 2.15
3871 6426 2.993899 AGTGTCGAAACGAAAGCCTATG 59.006 45.455 0.00 0.00 37.72 2.23
3872 6427 3.314541 AGTGTCGAAACGAAAGCCTAT 57.685 42.857 0.00 0.00 37.72 2.57
3873 6428 2.798283 CAAGTGTCGAAACGAAAGCCTA 59.202 45.455 0.00 0.00 37.72 3.93
3874 6429 1.597663 CAAGTGTCGAAACGAAAGCCT 59.402 47.619 0.00 0.00 37.72 4.58
3875 6430 1.333791 CCAAGTGTCGAAACGAAAGCC 60.334 52.381 0.00 0.00 37.72 4.35
3876 6431 1.595794 TCCAAGTGTCGAAACGAAAGC 59.404 47.619 0.00 0.00 37.72 3.51
3877 6432 3.936902 TTCCAAGTGTCGAAACGAAAG 57.063 42.857 0.00 0.00 37.72 2.62
3878 6433 4.886247 AATTCCAAGTGTCGAAACGAAA 57.114 36.364 0.00 0.00 37.72 3.46
3879 6434 4.886247 AAATTCCAAGTGTCGAAACGAA 57.114 36.364 0.00 0.00 37.72 3.85
3880 6435 4.886247 AAAATTCCAAGTGTCGAAACGA 57.114 36.364 0.00 0.00 0.00 3.85
3881 6436 5.981174 TCTAAAATTCCAAGTGTCGAAACG 58.019 37.500 0.00 0.00 0.00 3.60
3882 6437 6.204108 TCCTCTAAAATTCCAAGTGTCGAAAC 59.796 38.462 0.00 0.00 0.00 2.78
3883 6438 6.292923 TCCTCTAAAATTCCAAGTGTCGAAA 58.707 36.000 0.00 0.00 0.00 3.46
3884 6439 5.860611 TCCTCTAAAATTCCAAGTGTCGAA 58.139 37.500 0.00 0.00 0.00 3.71
3885 6440 5.477607 TCCTCTAAAATTCCAAGTGTCGA 57.522 39.130 0.00 0.00 0.00 4.20
3886 6441 6.348540 CCTTTCCTCTAAAATTCCAAGTGTCG 60.349 42.308 0.00 0.00 0.00 4.35
3887 6442 6.490381 ACCTTTCCTCTAAAATTCCAAGTGTC 59.510 38.462 0.00 0.00 0.00 3.67
3888 6443 6.373759 ACCTTTCCTCTAAAATTCCAAGTGT 58.626 36.000 0.00 0.00 0.00 3.55
3889 6444 6.901081 ACCTTTCCTCTAAAATTCCAAGTG 57.099 37.500 0.00 0.00 0.00 3.16
3890 6445 7.175797 CCTACCTTTCCTCTAAAATTCCAAGT 58.824 38.462 0.00 0.00 0.00 3.16
3891 6446 6.603599 CCCTACCTTTCCTCTAAAATTCCAAG 59.396 42.308 0.00 0.00 0.00 3.61
3892 6447 6.490492 CCCTACCTTTCCTCTAAAATTCCAA 58.510 40.000 0.00 0.00 0.00 3.53
3893 6448 5.574948 GCCCTACCTTTCCTCTAAAATTCCA 60.575 44.000 0.00 0.00 0.00 3.53
3894 6449 4.888239 GCCCTACCTTTCCTCTAAAATTCC 59.112 45.833 0.00 0.00 0.00 3.01
3895 6450 4.888239 GGCCCTACCTTTCCTCTAAAATTC 59.112 45.833 0.00 0.00 34.51 2.17
3896 6451 4.868268 GGCCCTACCTTTCCTCTAAAATT 58.132 43.478 0.00 0.00 34.51 1.82
3897 6452 4.521536 GGCCCTACCTTTCCTCTAAAAT 57.478 45.455 0.00 0.00 34.51 1.82
3908 6463 9.945633 TTTATTTATAAAATCAGGCCCTACCTT 57.054 29.630 0.00 0.00 36.59 3.50
3909 6464 9.588096 CTTTATTTATAAAATCAGGCCCTACCT 57.412 33.333 0.00 0.00 39.51 3.08
3910 6465 9.363401 ACTTTATTTATAAAATCAGGCCCTACC 57.637 33.333 0.00 0.00 33.41 3.18
3913 6468 9.487442 TTGACTTTATTTATAAAATCAGGCCCT 57.513 29.630 0.00 0.00 38.96 5.19
3914 6469 9.529325 GTTGACTTTATTTATAAAATCAGGCCC 57.471 33.333 0.00 0.00 38.96 5.80
3915 6470 9.529325 GGTTGACTTTATTTATAAAATCAGGCC 57.471 33.333 1.21 0.00 38.96 5.19
3916 6471 9.233232 CGGTTGACTTTATTTATAAAATCAGGC 57.767 33.333 1.21 1.38 38.96 4.85
3917 6472 9.730420 CCGGTTGACTTTATTTATAAAATCAGG 57.270 33.333 1.21 2.85 38.96 3.86
3922 6477 8.238631 GCTCACCGGTTGACTTTATTTATAAAA 58.761 33.333 2.97 0.00 32.39 1.52
3923 6478 7.390996 TGCTCACCGGTTGACTTTATTTATAAA 59.609 33.333 2.97 0.00 0.00 1.40
3924 6479 6.879993 TGCTCACCGGTTGACTTTATTTATAA 59.120 34.615 2.97 0.00 0.00 0.98
3925 6480 6.408035 TGCTCACCGGTTGACTTTATTTATA 58.592 36.000 2.97 0.00 0.00 0.98
3926 6481 5.250200 TGCTCACCGGTTGACTTTATTTAT 58.750 37.500 2.97 0.00 0.00 1.40
3927 6482 4.643463 TGCTCACCGGTTGACTTTATTTA 58.357 39.130 2.97 0.00 0.00 1.40
3928 6483 3.482436 TGCTCACCGGTTGACTTTATTT 58.518 40.909 2.97 0.00 0.00 1.40
3929 6484 3.074412 CTGCTCACCGGTTGACTTTATT 58.926 45.455 2.97 0.00 0.00 1.40
3930 6485 2.615493 CCTGCTCACCGGTTGACTTTAT 60.615 50.000 2.97 0.00 0.00 1.40
3931 6486 1.270625 CCTGCTCACCGGTTGACTTTA 60.271 52.381 2.97 0.00 0.00 1.85
3932 6487 0.535102 CCTGCTCACCGGTTGACTTT 60.535 55.000 2.97 0.00 0.00 2.66
3933 6488 1.071471 CCTGCTCACCGGTTGACTT 59.929 57.895 2.97 0.00 0.00 3.01
3934 6489 2.743718 CCTGCTCACCGGTTGACT 59.256 61.111 2.97 0.00 0.00 3.41
3935 6490 2.358737 CCCTGCTCACCGGTTGAC 60.359 66.667 2.97 0.00 0.00 3.18
3936 6491 4.329545 GCCCTGCTCACCGGTTGA 62.330 66.667 2.97 5.36 0.00 3.18
4185 6767 1.697432 TGATCCTTTTGAGGGACGTGT 59.303 47.619 0.00 0.00 35.51 4.49
4211 6793 7.114866 TCCTTTTGAGGGACGTTTTATTTTT 57.885 32.000 0.00 0.00 0.00 1.94
4212 6794 6.718522 TCCTTTTGAGGGACGTTTTATTTT 57.281 33.333 0.00 0.00 0.00 1.82
4213 6795 6.718522 TTCCTTTTGAGGGACGTTTTATTT 57.281 33.333 0.00 0.00 31.94 1.40
4214 6796 6.718522 TTTCCTTTTGAGGGACGTTTTATT 57.281 33.333 0.00 0.00 31.94 1.40
4215 6797 6.718522 TTTTCCTTTTGAGGGACGTTTTAT 57.281 33.333 0.00 0.00 31.94 1.40
4216 6798 6.718522 ATTTTCCTTTTGAGGGACGTTTTA 57.281 33.333 0.00 0.00 31.94 1.52
4217 6799 5.607939 ATTTTCCTTTTGAGGGACGTTTT 57.392 34.783 0.00 0.00 31.94 2.43
4218 6800 6.718522 TTATTTTCCTTTTGAGGGACGTTT 57.281 33.333 0.00 0.00 31.94 3.60
4219 6801 6.911250 ATTATTTTCCTTTTGAGGGACGTT 57.089 33.333 0.00 0.00 31.94 3.99
4220 6802 8.466798 CATTATTATTTTCCTTTTGAGGGACGT 58.533 33.333 0.00 0.00 31.94 4.34
4221 6803 7.435192 GCATTATTATTTTCCTTTTGAGGGACG 59.565 37.037 0.00 0.00 31.94 4.79
4222 6804 8.257306 TGCATTATTATTTTCCTTTTGAGGGAC 58.743 33.333 0.00 0.00 31.94 4.46
4223 6805 8.372877 TGCATTATTATTTTCCTTTTGAGGGA 57.627 30.769 0.00 0.00 0.00 4.20
4232 6814 7.176515 TGCGTGGATATGCATTATTATTTTCCT 59.823 33.333 3.54 0.00 43.60 3.36
4291 6873 0.528466 TGCTGAATCGCCGATCAGTC 60.528 55.000 20.01 15.04 33.17 3.51
4292 6874 0.807667 GTGCTGAATCGCCGATCAGT 60.808 55.000 20.01 0.00 33.17 3.41
4293 6875 1.493950 GGTGCTGAATCGCCGATCAG 61.494 60.000 16.88 16.88 0.00 2.90
4294 6876 1.521457 GGTGCTGAATCGCCGATCA 60.521 57.895 0.00 0.00 0.00 2.92
4295 6877 0.882042 ATGGTGCTGAATCGCCGATC 60.882 55.000 0.00 0.00 39.42 3.69
4296 6878 0.882042 GATGGTGCTGAATCGCCGAT 60.882 55.000 0.00 0.00 39.42 4.18
4297 6879 1.521457 GATGGTGCTGAATCGCCGA 60.521 57.895 0.00 0.00 39.42 5.54
4298 6880 1.815003 TGATGGTGCTGAATCGCCG 60.815 57.895 0.00 0.00 39.42 6.46
4299 6881 1.723870 GTGATGGTGCTGAATCGCC 59.276 57.895 0.00 0.00 37.15 5.54
4375 6957 3.221771 CAGACTGTAGGAGATGAGGAGG 58.778 54.545 0.00 0.00 0.00 4.30
4513 7095 0.385751 CATCTGGCGTACGTGAGGAT 59.614 55.000 17.90 12.17 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.