Multiple sequence alignment - TraesCS1A01G164800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G164800 chr1A 100.000 7751 0 0 1 7751 297751927 297744177 0.000000e+00 14314.0
1 TraesCS1A01G164800 chr1A 87.243 1897 190 29 5215 7091 99658335 99660199 0.000000e+00 2115.0
2 TraesCS1A01G164800 chr1A 88.169 1589 150 18 5226 6788 99699668 99698092 0.000000e+00 1858.0
3 TraesCS1A01G164800 chr1A 87.640 445 49 2 4744 5184 99657894 99658336 5.360000e-141 512.0
4 TraesCS1A01G164800 chr1A 87.699 439 48 4 4751 5185 99700118 99699682 2.500000e-139 507.0
5 TraesCS1A01G164800 chr1A 87.697 317 21 11 4364 4670 99700473 99700165 3.440000e-93 353.0
6 TraesCS1A01G164800 chr1A 84.052 232 27 7 2500 2724 99622324 99622552 1.690000e-51 215.0
7 TraesCS1A01G164800 chr1A 82.917 240 32 7 2501 2736 99701085 99700851 2.830000e-49 207.0
8 TraesCS1A01G164800 chr1A 83.784 222 21 8 4453 4670 99657647 99657857 6.140000e-46 196.0
9 TraesCS1A01G164800 chr1A 90.991 111 10 0 2987 3097 474447164 474447274 4.840000e-32 150.0
10 TraesCS1A01G164800 chr1A 79.817 218 31 10 845 1050 99621630 99621846 6.270000e-31 147.0
11 TraesCS1A01G164800 chr1D 92.770 4122 171 48 3094 7127 229487472 229483390 0.000000e+00 5843.0
12 TraesCS1A01G164800 chr1D 87.802 992 57 27 364 1338 229490015 229489071 0.000000e+00 1103.0
13 TraesCS1A01G164800 chr1D 83.212 822 69 36 1712 2504 229488684 229487903 0.000000e+00 689.0
14 TraesCS1A01G164800 chr1D 91.075 493 22 5 2495 2987 229487946 229487476 0.000000e+00 647.0
15 TraesCS1A01G164800 chr1D 88.219 365 28 8 1 351 229490429 229490066 9.300000e-114 422.0
16 TraesCS1A01G164800 chr1D 89.783 323 11 8 1378 1687 229488986 229488673 2.030000e-105 394.0
17 TraesCS1A01G164800 chr1D 96.875 32 1 0 5184 5215 254443886 254443855 4.000000e-03 54.7
18 TraesCS1A01G164800 chr1B 93.743 1918 95 16 5214 7115 328822368 328820460 0.000000e+00 2854.0
19 TraesCS1A01G164800 chr1B 88.951 1077 72 21 3577 4625 328823883 328822826 0.000000e+00 1286.0
20 TraesCS1A01G164800 chr1B 95.506 623 24 2 7129 7751 72698629 72698011 0.000000e+00 992.0
21 TraesCS1A01G164800 chr1B 82.025 1057 80 44 1949 2992 328825332 328824373 0.000000e+00 798.0
22 TraesCS1A01G164800 chr1B 93.154 482 33 0 4704 5185 328822848 328822367 0.000000e+00 708.0
23 TraesCS1A01G164800 chr1B 86.385 639 29 26 717 1338 328826719 328826122 0.000000e+00 645.0
24 TraesCS1A01G164800 chr1B 89.047 493 27 17 3094 3579 328824377 328823905 3.120000e-163 586.0
25 TraesCS1A01G164800 chr1B 88.325 394 25 9 1378 1757 328826016 328825630 3.300000e-123 453.0
26 TraesCS1A01G164800 chr1B 89.560 364 25 7 373 726 328831756 328831396 4.270000e-122 449.0
27 TraesCS1A01G164800 chr1B 84.097 371 33 12 1 351 328832173 328831809 1.250000e-87 335.0
28 TraesCS1A01G164800 chr5D 87.546 1903 181 37 5215 7091 11433771 11435643 0.000000e+00 2150.0
29 TraesCS1A01G164800 chr5D 86.811 1615 149 22 5226 6788 11531036 11529434 0.000000e+00 1744.0
30 TraesCS1A01G164800 chr5D 85.682 447 54 7 4746 5185 11531493 11531050 5.480000e-126 462.0
31 TraesCS1A01G164800 chr5D 85.235 447 58 4 4744 5185 11433330 11433773 3.300000e-123 453.0
32 TraesCS1A01G164800 chr5D 83.090 479 43 17 4201 4670 11432844 11433293 1.210000e-107 401.0
33 TraesCS1A01G164800 chr5D 87.619 315 25 7 4364 4670 11531844 11531536 3.440000e-93 353.0
34 TraesCS1A01G164800 chr5D 84.979 233 23 9 2500 2724 11432355 11432583 7.830000e-55 226.0
35 TraesCS1A01G164800 chr5D 82.008 239 36 5 2501 2736 11532462 11532228 6.140000e-46 196.0
36 TraesCS1A01G164800 chr5D 81.905 210 28 4 845 1044 11431664 11431873 1.340000e-37 169.0
37 TraesCS1A01G164800 chr5D 96.875 32 1 0 5184 5215 6168096 6168127 4.000000e-03 54.7
38 TraesCS1A01G164800 chr5D 96.875 32 1 0 5184 5215 6267130 6267161 4.000000e-03 54.7
39 TraesCS1A01G164800 chr5D 96.875 32 1 0 5184 5215 12937941 12937910 4.000000e-03 54.7
40 TraesCS1A01G164800 chr5D 96.875 32 1 0 5184 5215 329159126 329159157 4.000000e-03 54.7
41 TraesCS1A01G164800 chr5D 96.875 32 1 0 5184 5215 503300754 503300723 4.000000e-03 54.7
42 TraesCS1A01G164800 chr5B 86.032 1797 172 40 5215 6983 11552226 11550481 0.000000e+00 1855.0
43 TraesCS1A01G164800 chr5B 87.696 1593 150 25 5217 6779 11515602 11517178 0.000000e+00 1814.0
44 TraesCS1A01G164800 chr5B 85.520 442 54 8 4751 5185 11515163 11515601 3.300000e-123 453.0
45 TraesCS1A01G164800 chr5B 82.816 483 52 18 4201 4673 11555392 11554931 3.370000e-108 403.0
46 TraesCS1A01G164800 chr5B 86.792 318 24 9 4364 4669 11514802 11515113 9.630000e-89 339.0
47 TraesCS1A01G164800 chr5B 88.889 261 25 2 4744 5002 11554897 11554639 1.260000e-82 318.0
48 TraesCS1A01G164800 chr5B 86.175 217 18 7 2500 2709 11555711 11555500 2.810000e-54 224.0
49 TraesCS1A01G164800 chr5B 82.845 239 33 4 2501 2736 11514191 11514424 2.830000e-49 207.0
50 TraesCS1A01G164800 chr5B 91.150 113 10 0 2985 3097 669302586 669302698 3.750000e-33 154.0
51 TraesCS1A01G164800 chr5B 80.583 206 24 10 4988 5185 11552421 11552224 2.250000e-30 145.0
52 TraesCS1A01G164800 chr5B 100.000 28 0 0 322 349 693013055 693013082 1.400000e-02 52.8
53 TraesCS1A01G164800 chr2D 97.284 626 16 1 7126 7751 428657451 428658075 0.000000e+00 1061.0
54 TraesCS1A01G164800 chr4D 85.099 302 36 5 4314 4612 505952201 505951906 4.550000e-77 300.0
55 TraesCS1A01G164800 chr4D 96.970 33 1 0 5184 5216 19877307 19877275 1.000000e-03 56.5
56 TraesCS1A01G164800 chr4D 96.875 32 1 0 5184 5215 207038063 207038094 4.000000e-03 54.7
57 TraesCS1A01G164800 chr6A 92.857 112 8 0 2989 3100 608217376 608217265 6.220000e-36 163.0
58 TraesCS1A01G164800 chr7A 92.105 114 9 0 2984 3097 138162438 138162551 2.240000e-35 161.0
59 TraesCS1A01G164800 chr7A 85.000 100 10 3 245 341 180636319 180636416 6.400000e-16 97.1
60 TraesCS1A01G164800 chr2B 92.035 113 8 1 2985 3097 456339338 456339449 2.900000e-34 158.0
61 TraesCS1A01G164800 chrUn 91.667 108 9 0 2990 3097 223726758 223726651 4.840000e-32 150.0
62 TraesCS1A01G164800 chrUn 91.667 108 9 0 2990 3097 308507526 308507633 4.840000e-32 150.0
63 TraesCS1A01G164800 chrUn 91.667 108 9 0 2990 3097 308511613 308511720 4.840000e-32 150.0
64 TraesCS1A01G164800 chr7B 90.179 112 11 0 2986 3097 34609644 34609755 6.270000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G164800 chr1A 297744177 297751927 7750 True 14314.000000 14314 100.000000 1 7751 1 chr1A.!!$R1 7750
1 TraesCS1A01G164800 chr1A 99657647 99660199 2552 False 941.000000 2115 86.222333 4453 7091 3 chr1A.!!$F3 2638
2 TraesCS1A01G164800 chr1A 99698092 99701085 2993 True 731.250000 1858 86.620500 2501 6788 4 chr1A.!!$R2 4287
3 TraesCS1A01G164800 chr1D 229483390 229490429 7039 True 1516.333333 5843 88.810167 1 7127 6 chr1D.!!$R2 7126
4 TraesCS1A01G164800 chr1B 328820460 328826719 6259 True 1047.142857 2854 88.804286 717 7115 7 chr1B.!!$R2 6398
5 TraesCS1A01G164800 chr1B 72698011 72698629 618 True 992.000000 992 95.506000 7129 7751 1 chr1B.!!$R1 622
6 TraesCS1A01G164800 chr1B 328831396 328832173 777 True 392.000000 449 86.828500 1 726 2 chr1B.!!$R3 725
7 TraesCS1A01G164800 chr5D 11529434 11532462 3028 True 688.750000 1744 85.530000 2501 6788 4 chr5D.!!$R3 4287
8 TraesCS1A01G164800 chr5D 11431664 11435643 3979 False 679.800000 2150 84.551000 845 7091 5 chr5D.!!$F4 6246
9 TraesCS1A01G164800 chr5B 11514191 11517178 2987 False 703.250000 1814 85.713250 2501 6779 4 chr5B.!!$F3 4278
10 TraesCS1A01G164800 chr5B 11550481 11555711 5230 True 589.000000 1855 84.899000 2500 6983 5 chr5B.!!$R1 4483
11 TraesCS1A01G164800 chr2D 428657451 428658075 624 False 1061.000000 1061 97.284000 7126 7751 1 chr2D.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 379 0.391263 CTTCGCTAGGTTTTCCCGCT 60.391 55.0 0.00 0.00 41.86 5.52 F
1648 1832 0.323999 TCTGTCCCGCTTGGTAGCTA 60.324 55.0 0.00 0.00 45.51 3.32 F
1651 1835 0.459759 GTCCCGCTTGGTAGCTACAC 60.460 60.0 24.75 14.51 45.51 2.90 F
3043 3702 0.027455 CGTTTCAGACGCTGTGCAAA 59.973 50.0 0.00 0.00 45.86 3.68 F
3625 4337 0.465705 CAGAGATGCCTTTCGCCCTA 59.534 55.0 0.00 0.00 36.24 3.53 F
4222 4971 0.458716 GCGCTAGAACCACTGAGTCC 60.459 60.0 0.00 0.00 0.00 3.85 F
5095 8111 0.232303 CTGAAACGAACTGTCACCGC 59.768 55.0 0.00 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 2664 0.038159 CAACCGACACAGAGAGGACC 60.038 60.000 0.00 0.0 0.00 4.46 R
2554 2912 0.108992 GCGACCCATGACGAACTACA 60.109 55.000 0.00 0.0 0.00 2.74 R
3104 3763 0.248012 ACACGTCATTATCACGCCCA 59.752 50.000 0.00 0.0 41.10 5.36 R
4204 4953 0.173708 GGGACTCAGTGGTTCTAGCG 59.826 60.000 0.00 0.0 0.00 4.26 R
4884 5664 1.077212 AAGCGCCTTGATGCCAGAT 60.077 52.632 2.29 0.0 0.00 2.90 R
5383 8423 1.542472 CTCAATGCACTTGTCATGCCA 59.458 47.619 0.00 0.0 42.69 4.92 R
6993 10107 0.254178 TCAGAGAGAAGCCCCAATGC 59.746 55.000 0.00 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 149 7.477144 AAATGATACGAAATATCTCACGCAA 57.523 32.000 0.00 0.00 40.52 4.85
188 195 7.123098 ACAATGGATCTCAATGTGAAATTAGCA 59.877 33.333 4.65 0.00 38.03 3.49
192 199 6.541641 GGATCTCAATGTGAAATTAGCAGTCT 59.458 38.462 0.00 0.00 0.00 3.24
209 216 4.451096 GCAGTCTTTGGTTTCGAGATACAA 59.549 41.667 0.00 0.00 0.00 2.41
215 222 6.757010 TCTTTGGTTTCGAGATACAATCTAGC 59.243 38.462 0.00 0.00 40.38 3.42
222 229 8.917655 GTTTCGAGATACAATCTAGCTAAATCC 58.082 37.037 0.00 0.00 40.38 3.01
230 247 5.128827 ACAATCTAGCTAAATCCCGACTTGA 59.871 40.000 0.00 0.00 0.00 3.02
241 258 5.614324 ATCCCGACTTGATTATGTCTTGA 57.386 39.130 2.66 0.07 0.00 3.02
251 268 7.383572 ACTTGATTATGTCTTGATCGATGCTAC 59.616 37.037 0.54 0.00 0.00 3.58
270 287 9.494271 GATGCTACATTCCTGAGATTTTACATA 57.506 33.333 0.00 0.00 0.00 2.29
273 290 9.202273 GCTACATTCCTGAGATTTTACATAGAG 57.798 37.037 0.00 0.00 0.00 2.43
281 298 6.216569 TGAGATTTTACATAGAGATCCGTGC 58.783 40.000 0.00 0.00 0.00 5.34
291 308 6.150976 ACATAGAGATCCGTGCAAAATTTTCA 59.849 34.615 0.00 0.01 0.00 2.69
333 355 9.135843 CTTTCTTACATGTTACGTCACTTGATA 57.864 33.333 19.16 7.85 0.00 2.15
346 368 5.507077 GTCACTTGATAGAGACTTCGCTAG 58.493 45.833 0.00 0.00 38.49 3.42
351 373 5.916661 TGATAGAGACTTCGCTAGGTTTT 57.083 39.130 0.00 0.00 32.00 2.43
352 374 5.892568 TGATAGAGACTTCGCTAGGTTTTC 58.107 41.667 0.00 0.00 32.00 2.29
353 375 3.596310 AGAGACTTCGCTAGGTTTTCC 57.404 47.619 0.00 0.00 41.05 3.13
354 376 2.234168 AGAGACTTCGCTAGGTTTTCCC 59.766 50.000 0.00 0.00 41.86 3.97
355 377 1.067071 AGACTTCGCTAGGTTTTCCCG 60.067 52.381 0.00 0.00 41.86 5.14
356 378 0.672711 ACTTCGCTAGGTTTTCCCGC 60.673 55.000 0.00 0.00 41.86 6.13
357 379 0.391263 CTTCGCTAGGTTTTCCCGCT 60.391 55.000 0.00 0.00 41.86 5.52
358 380 0.896923 TTCGCTAGGTTTTCCCGCTA 59.103 50.000 0.00 0.00 41.86 4.26
359 381 0.896923 TCGCTAGGTTTTCCCGCTAA 59.103 50.000 0.00 0.00 41.86 3.09
360 382 1.483415 TCGCTAGGTTTTCCCGCTAAT 59.517 47.619 0.00 0.00 41.86 1.73
361 383 2.093341 TCGCTAGGTTTTCCCGCTAATT 60.093 45.455 0.00 0.00 41.86 1.40
377 437 7.596995 TCCCGCTAATTTCAGTTAACATTTTTG 59.403 33.333 8.61 0.00 0.00 2.44
408 468 3.000041 ACATGCATGTAACCTGTACACG 59.000 45.455 30.50 0.00 39.68 4.49
490 554 4.746535 TTCGAATTGCCTGTATCTGGTA 57.253 40.909 0.00 0.00 0.00 3.25
502 566 6.258947 GCCTGTATCTGGTAAGAAATCAGTTC 59.741 42.308 0.00 0.00 35.59 3.01
504 568 8.696374 CCTGTATCTGGTAAGAAATCAGTTCTA 58.304 37.037 0.00 0.00 46.36 2.10
592 669 1.460305 ACGGAGCTGGGGCATATCT 60.460 57.895 0.00 0.00 41.70 1.98
625 708 3.770040 CCACGCCATCCCGTCTCA 61.770 66.667 0.00 0.00 39.83 3.27
710 793 3.476646 CGCGAGCACTGCACTGAG 61.477 66.667 0.00 0.00 0.00 3.35
757 840 0.749649 GTGCATCCACACACCCAAAA 59.250 50.000 0.00 0.00 41.67 2.44
758 841 1.137872 GTGCATCCACACACCCAAAAA 59.862 47.619 0.00 0.00 41.67 1.94
759 842 1.137872 TGCATCCACACACCCAAAAAC 59.862 47.619 0.00 0.00 0.00 2.43
761 844 2.419297 GCATCCACACACCCAAAAACAA 60.419 45.455 0.00 0.00 0.00 2.83
763 846 4.256920 CATCCACACACCCAAAAACAAAA 58.743 39.130 0.00 0.00 0.00 2.44
764 847 4.351874 TCCACACACCCAAAAACAAAAA 57.648 36.364 0.00 0.00 0.00 1.94
765 848 4.065789 TCCACACACCCAAAAACAAAAAC 58.934 39.130 0.00 0.00 0.00 2.43
771 854 6.752351 ACACACCCAAAAACAAAAACAAAAAC 59.248 30.769 0.00 0.00 0.00 2.43
843 926 9.471084 GTACCACATTAACATTAATATTTGGGC 57.529 33.333 16.10 9.43 34.34 5.36
972 1055 4.354943 CCCACCCCACCTCCTCCT 62.355 72.222 0.00 0.00 0.00 3.69
987 1070 0.469144 CTCCTACCTCTGCTCCTCCC 60.469 65.000 0.00 0.00 0.00 4.30
1243 1339 3.580731 CTCTTGTCTTTTCCTCCTCGTC 58.419 50.000 0.00 0.00 0.00 4.20
1260 1356 1.202336 CGTCTTTTCGCCCGGTATAGT 60.202 52.381 0.00 0.00 0.00 2.12
1263 1359 4.083324 CGTCTTTTCGCCCGGTATAGTATA 60.083 45.833 0.00 0.00 0.00 1.47
1264 1360 5.397326 GTCTTTTCGCCCGGTATAGTATAG 58.603 45.833 0.00 0.00 0.00 1.31
1265 1361 3.855689 TTTCGCCCGGTATAGTATAGC 57.144 47.619 8.98 8.98 0.00 2.97
1266 1362 2.495155 TCGCCCGGTATAGTATAGCA 57.505 50.000 17.27 0.00 0.00 3.49
1267 1363 3.008835 TCGCCCGGTATAGTATAGCAT 57.991 47.619 17.27 0.00 0.00 3.79
1268 1364 2.686405 TCGCCCGGTATAGTATAGCATG 59.314 50.000 17.27 9.53 0.00 4.06
1269 1365 2.798499 CGCCCGGTATAGTATAGCATGC 60.798 54.545 10.51 10.51 0.00 4.06
1270 1366 2.167693 GCCCGGTATAGTATAGCATGCA 59.832 50.000 21.98 6.36 0.00 3.96
1271 1367 3.181465 GCCCGGTATAGTATAGCATGCAT 60.181 47.826 21.98 13.55 0.00 3.96
1272 1368 4.683400 GCCCGGTATAGTATAGCATGCATT 60.683 45.833 21.98 9.12 0.00 3.56
1273 1369 5.050490 CCCGGTATAGTATAGCATGCATTC 58.950 45.833 21.98 9.24 0.00 2.67
1274 1370 4.740205 CCGGTATAGTATAGCATGCATTCG 59.260 45.833 21.98 10.33 0.00 3.34
1284 1380 2.874086 AGCATGCATTCGATTCGATTCA 59.126 40.909 21.98 8.47 35.23 2.57
1318 1414 3.272334 CTACGCTGCCGCCCAATC 61.272 66.667 0.00 0.00 38.22 2.67
1319 1415 4.849310 TACGCTGCCGCCCAATCC 62.849 66.667 0.00 0.00 38.22 3.01
1335 1431 0.665835 ATCCGCACGAACAAAGCAAA 59.334 45.000 0.00 0.00 0.00 3.68
1338 1434 1.544686 CGCACGAACAAAGCAAAAGT 58.455 45.000 0.00 0.00 0.00 2.66
1339 1435 1.917303 CGCACGAACAAAGCAAAAGTT 59.083 42.857 0.00 0.00 0.00 2.66
1341 1437 3.181535 CGCACGAACAAAGCAAAAGTTTT 60.182 39.130 0.00 0.00 0.00 2.43
1343 1439 5.276161 CGCACGAACAAAGCAAAAGTTTTAT 60.276 36.000 0.00 0.00 0.00 1.40
1344 1440 6.474364 GCACGAACAAAGCAAAAGTTTTATT 58.526 32.000 0.00 0.00 0.00 1.40
1345 1441 6.407753 GCACGAACAAAGCAAAAGTTTTATTG 59.592 34.615 14.37 14.37 0.00 1.90
1346 1442 7.670916 CACGAACAAAGCAAAAGTTTTATTGA 58.329 30.769 19.41 0.00 0.00 2.57
1350 1446 9.424659 GAACAAAGCAAAAGTTTTATTGACATG 57.575 29.630 19.41 0.00 0.00 3.21
1376 1472 9.509855 GAAAATATAGTAGTATCATCGCTCTGG 57.490 37.037 0.00 0.00 0.00 3.86
1465 1638 1.597663 GAAAGGGACGTTCATATGCGG 59.402 52.381 0.00 0.00 45.77 5.69
1559 1732 0.661552 CTCCGCTTTCATGATGGCTG 59.338 55.000 15.25 10.60 0.00 4.85
1560 1733 0.749091 TCCGCTTTCATGATGGCTGG 60.749 55.000 15.25 16.12 0.00 4.85
1561 1734 1.065273 CGCTTTCATGATGGCTGGC 59.935 57.895 15.25 0.00 0.00 4.85
1562 1735 1.440476 GCTTTCATGATGGCTGGCC 59.560 57.895 4.43 4.43 0.00 5.36
1563 1736 1.731700 CTTTCATGATGGCTGGCCG 59.268 57.895 7.14 0.00 39.42 6.13
1634 1818 4.963953 CACGCGATATTTCCAATTTCTGTC 59.036 41.667 15.93 0.00 0.00 3.51
1641 1825 1.533625 TCCAATTTCTGTCCCGCTTG 58.466 50.000 0.00 0.00 0.00 4.01
1648 1832 0.323999 TCTGTCCCGCTTGGTAGCTA 60.324 55.000 0.00 0.00 45.51 3.32
1651 1835 0.459759 GTCCCGCTTGGTAGCTACAC 60.460 60.000 24.75 14.51 45.51 2.90
1659 1843 2.394930 TGGTAGCTACACGTACGGTA 57.605 50.000 24.75 16.54 0.00 4.02
1662 1846 3.694072 TGGTAGCTACACGTACGGTATTT 59.306 43.478 24.75 11.34 0.00 1.40
1663 1847 4.157656 TGGTAGCTACACGTACGGTATTTT 59.842 41.667 24.75 9.30 0.00 1.82
1664 1848 4.735338 GGTAGCTACACGTACGGTATTTTC 59.265 45.833 24.75 9.41 0.00 2.29
1665 1849 3.774066 AGCTACACGTACGGTATTTTCC 58.226 45.455 21.06 0.05 0.00 3.13
1666 1850 3.445096 AGCTACACGTACGGTATTTTCCT 59.555 43.478 21.06 2.43 0.00 3.36
1667 1851 4.640201 AGCTACACGTACGGTATTTTCCTA 59.360 41.667 21.06 0.00 0.00 2.94
1668 1852 4.735338 GCTACACGTACGGTATTTTCCTAC 59.265 45.833 21.06 0.00 0.00 3.18
1669 1853 3.758300 ACACGTACGGTATTTTCCTACG 58.242 45.455 21.06 0.00 38.82 3.51
1670 1854 3.190535 ACACGTACGGTATTTTCCTACGT 59.809 43.478 21.06 0.00 42.38 3.57
1676 1860 4.737054 ACGGTATTTTCCTACGTACTGTG 58.263 43.478 0.00 0.00 35.83 3.66
1677 1861 4.218417 ACGGTATTTTCCTACGTACTGTGT 59.782 41.667 0.00 0.00 35.83 3.72
1681 1865 7.513132 GGTATTTTCCTACGTACTGTGTTTTC 58.487 38.462 0.00 0.00 0.00 2.29
1683 1867 4.942761 TTCCTACGTACTGTGTTTTCCT 57.057 40.909 0.00 0.00 0.00 3.36
1751 1937 6.183361 TGGATATAGGATGAGATATTTGGCGG 60.183 42.308 0.00 0.00 0.00 6.13
1770 1956 2.103094 CGGTAAGATGAGGGATTGAGCA 59.897 50.000 0.00 0.00 0.00 4.26
1772 1958 3.879892 GGTAAGATGAGGGATTGAGCAAC 59.120 47.826 0.00 0.00 0.00 4.17
1777 1963 1.339438 TGAGGGATTGAGCAACTGAGC 60.339 52.381 0.00 0.00 0.00 4.26
1797 1983 3.561725 AGCGGAGTAAGATAAATGCTTGC 59.438 43.478 0.00 0.00 0.00 4.01
1798 1984 3.561725 GCGGAGTAAGATAAATGCTTGCT 59.438 43.478 0.00 0.00 40.30 3.91
1800 1986 5.505286 CGGAGTAAGATAAATGCTTGCTTG 58.495 41.667 0.00 0.00 38.22 4.01
1801 1987 5.504665 CGGAGTAAGATAAATGCTTGCTTGG 60.505 44.000 0.00 0.00 38.22 3.61
1870 2056 3.511934 GCTTCCCTCGTCCAGTCATATAT 59.488 47.826 0.00 0.00 0.00 0.86
1873 2063 5.516059 TCCCTCGTCCAGTCATATATACT 57.484 43.478 0.00 0.00 0.00 2.12
1874 2064 5.498393 TCCCTCGTCCAGTCATATATACTC 58.502 45.833 0.00 0.00 0.00 2.59
1929 2232 7.017645 GCATTTATATTGGAACGAGCATGTAG 58.982 38.462 0.00 0.00 0.00 2.74
1955 2258 2.092484 TCCAGATTTCGCATGGATCCAA 60.092 45.455 20.67 0.22 38.19 3.53
1977 2311 5.986004 ACAGTGTTTGTTTCTGCTAGTAC 57.014 39.130 0.00 0.00 36.31 2.73
1978 2312 5.671493 ACAGTGTTTGTTTCTGCTAGTACT 58.329 37.500 0.00 0.00 36.31 2.73
1979 2313 6.812998 ACAGTGTTTGTTTCTGCTAGTACTA 58.187 36.000 1.89 1.89 36.31 1.82
2002 2336 9.249053 ACTATATATTGATCGGTGACTTCATCT 57.751 33.333 0.95 0.00 0.00 2.90
2044 2380 6.918569 AGTGATCTTCGTCTATAATTGAACGG 59.081 38.462 0.00 0.00 0.00 4.44
2055 2391 9.887406 GTCTATAATTGAACGGAAAAGAACAAA 57.113 29.630 0.00 0.00 0.00 2.83
2117 2453 2.044946 CCGCCCAAAGAAGAGGGG 60.045 66.667 0.00 0.00 45.58 4.79
2153 2490 4.055094 ACCCTCCCCTTTATCTATGCTTT 58.945 43.478 0.00 0.00 0.00 3.51
2159 2496 7.201857 CCTCCCCTTTATCTATGCTTTCTTTTG 60.202 40.741 0.00 0.00 0.00 2.44
2229 2568 2.353145 GCGCTGCATGCACATAGC 60.353 61.111 18.46 17.71 43.06 2.97
2253 2592 6.373779 CAGTATTTTAACTGTGCAACCTGAG 58.626 40.000 0.00 0.00 41.63 3.35
2263 2602 1.885157 CAACCTGAGCCGTACGGTA 59.115 57.895 33.34 19.56 37.65 4.02
2327 2668 3.109240 GAGTCGCCTACTCGGTCC 58.891 66.667 0.00 0.00 45.05 4.46
2329 2670 1.438562 GAGTCGCCTACTCGGTCCTC 61.439 65.000 0.00 0.00 45.05 3.71
2330 2671 1.451747 GTCGCCTACTCGGTCCTCT 60.452 63.158 0.00 0.00 34.25 3.69
2351 2700 2.299013 TCTGTGTCGGTTGCTCAATACT 59.701 45.455 0.00 0.00 0.00 2.12
2352 2701 3.508402 TCTGTGTCGGTTGCTCAATACTA 59.492 43.478 0.00 0.00 0.00 1.82
2354 2703 3.257375 TGTGTCGGTTGCTCAATACTACT 59.743 43.478 0.00 0.00 0.00 2.57
2356 2705 5.035443 GTGTCGGTTGCTCAATACTACTAG 58.965 45.833 0.00 0.00 0.00 2.57
2357 2706 4.703575 TGTCGGTTGCTCAATACTACTAGT 59.296 41.667 0.00 0.00 0.00 2.57
2360 2709 5.416639 TCGGTTGCTCAATACTACTAGTCAA 59.583 40.000 0.00 0.00 0.00 3.18
2362 2711 7.283807 TCGGTTGCTCAATACTACTAGTCAATA 59.716 37.037 0.00 0.00 0.00 1.90
2363 2712 7.378995 CGGTTGCTCAATACTACTAGTCAATAC 59.621 40.741 0.00 0.00 0.00 1.89
2364 2713 8.195436 GGTTGCTCAATACTACTAGTCAATACA 58.805 37.037 0.00 0.00 0.00 2.29
2365 2714 9.239002 GTTGCTCAATACTACTAGTCAATACAG 57.761 37.037 0.00 0.00 0.00 2.74
2366 2715 8.521170 TGCTCAATACTACTAGTCAATACAGT 57.479 34.615 0.00 0.00 0.00 3.55
2367 2716 9.623000 TGCTCAATACTACTAGTCAATACAGTA 57.377 33.333 0.00 0.54 0.00 2.74
2375 2724 8.728337 CTACTAGTCAATACAGTAGTACCACA 57.272 38.462 0.00 0.00 37.86 4.17
2376 2725 9.339850 CTACTAGTCAATACAGTAGTACCACAT 57.660 37.037 0.00 0.00 37.86 3.21
2377 2726 8.591114 ACTAGTCAATACAGTAGTACCACATT 57.409 34.615 0.00 0.00 31.76 2.71
2378 2727 8.467598 ACTAGTCAATACAGTAGTACCACATTG 58.532 37.037 0.00 4.66 31.76 2.82
2379 2728 6.640518 AGTCAATACAGTAGTACCACATTGG 58.359 40.000 13.92 0.00 45.02 3.16
2380 2729 5.293569 GTCAATACAGTAGTACCACATTGGC 59.706 44.000 13.92 10.65 42.67 4.52
2381 2730 2.781681 ACAGTAGTACCACATTGGCC 57.218 50.000 0.00 0.00 42.67 5.36
2382 2731 2.266279 ACAGTAGTACCACATTGGCCT 58.734 47.619 3.32 0.00 42.67 5.19
2383 2732 2.642807 ACAGTAGTACCACATTGGCCTT 59.357 45.455 3.32 0.00 42.67 4.35
2384 2733 3.270877 CAGTAGTACCACATTGGCCTTC 58.729 50.000 3.32 0.00 42.67 3.46
2385 2734 2.910319 AGTAGTACCACATTGGCCTTCA 59.090 45.455 3.32 0.00 42.67 3.02
2454 2806 2.216940 CGCAAGCATCGGCAATAATTTG 59.783 45.455 0.00 0.00 44.61 2.32
2455 2807 3.446799 GCAAGCATCGGCAATAATTTGA 58.553 40.909 0.00 0.00 44.61 2.69
2466 2818 1.003851 ATAATTTGACGTGGGTCGCG 58.996 50.000 0.00 0.00 46.49 5.87
2472 2824 1.286354 TGACGTGGGTCGCGATTTTC 61.286 55.000 14.06 0.00 46.49 2.29
2475 2827 1.296056 CGTGGGTCGCGATTTTCCTT 61.296 55.000 14.06 0.00 39.94 3.36
2476 2828 0.879090 GTGGGTCGCGATTTTCCTTT 59.121 50.000 14.06 0.00 0.00 3.11
2477 2829 0.878416 TGGGTCGCGATTTTCCTTTG 59.122 50.000 14.06 0.00 0.00 2.77
2478 2830 1.161843 GGGTCGCGATTTTCCTTTGA 58.838 50.000 14.06 0.00 0.00 2.69
2479 2831 1.135774 GGGTCGCGATTTTCCTTTGAC 60.136 52.381 14.06 0.00 0.00 3.18
2480 2832 1.533731 GGTCGCGATTTTCCTTTGACA 59.466 47.619 14.06 0.00 0.00 3.58
2481 2833 2.031508 GGTCGCGATTTTCCTTTGACAA 60.032 45.455 14.06 0.00 0.00 3.18
2482 2834 3.226347 GTCGCGATTTTCCTTTGACAAG 58.774 45.455 14.06 0.00 0.00 3.16
2483 2835 1.978782 CGCGATTTTCCTTTGACAAGC 59.021 47.619 0.00 0.00 0.00 4.01
2484 2836 2.328473 GCGATTTTCCTTTGACAAGCC 58.672 47.619 0.00 0.00 0.00 4.35
2485 2837 2.029918 GCGATTTTCCTTTGACAAGCCT 60.030 45.455 0.00 0.00 0.00 4.58
2486 2838 3.826466 CGATTTTCCTTTGACAAGCCTC 58.174 45.455 0.00 0.00 0.00 4.70
2487 2839 3.667960 CGATTTTCCTTTGACAAGCCTCG 60.668 47.826 0.00 0.00 0.00 4.63
2488 2840 2.341846 TTTCCTTTGACAAGCCTCGT 57.658 45.000 0.00 0.00 0.00 4.18
2489 2841 1.878953 TTCCTTTGACAAGCCTCGTC 58.121 50.000 0.00 0.00 0.00 4.20
2490 2842 0.756294 TCCTTTGACAAGCCTCGTCA 59.244 50.000 0.00 0.00 41.53 4.35
2491 2843 1.347707 TCCTTTGACAAGCCTCGTCAT 59.652 47.619 1.73 0.00 42.69 3.06
2492 2844 1.466167 CCTTTGACAAGCCTCGTCATG 59.534 52.381 1.73 0.00 42.69 3.07
2493 2845 2.416747 CTTTGACAAGCCTCGTCATGA 58.583 47.619 0.00 0.00 42.69 3.07
2494 2846 2.768253 TTGACAAGCCTCGTCATGAT 57.232 45.000 0.00 0.00 42.69 2.45
2495 2847 2.299993 TGACAAGCCTCGTCATGATC 57.700 50.000 0.00 0.00 38.45 2.92
2496 2848 1.203928 GACAAGCCTCGTCATGATCG 58.796 55.000 0.00 5.00 33.43 3.69
2497 2849 0.807667 ACAAGCCTCGTCATGATCGC 60.808 55.000 0.00 0.00 0.00 4.58
2498 2850 1.227380 AAGCCTCGTCATGATCGCC 60.227 57.895 0.00 0.00 0.00 5.54
2499 2851 1.960040 AAGCCTCGTCATGATCGCCA 61.960 55.000 0.00 0.00 0.00 5.69
2500 2852 1.301244 GCCTCGTCATGATCGCCAT 60.301 57.895 0.00 0.00 35.44 4.40
2501 2853 0.882042 GCCTCGTCATGATCGCCATT 60.882 55.000 0.00 0.00 31.94 3.16
2502 2854 1.586422 CCTCGTCATGATCGCCATTT 58.414 50.000 0.00 0.00 31.94 2.32
2503 2855 1.942657 CCTCGTCATGATCGCCATTTT 59.057 47.619 0.00 0.00 31.94 1.82
2504 2856 2.355756 CCTCGTCATGATCGCCATTTTT 59.644 45.455 0.00 0.00 31.94 1.94
2505 2857 3.546815 CCTCGTCATGATCGCCATTTTTC 60.547 47.826 0.00 0.00 31.94 2.29
2506 2858 2.354510 TCGTCATGATCGCCATTTTTCC 59.645 45.455 0.00 0.00 31.94 3.13
2507 2859 2.097304 CGTCATGATCGCCATTTTTCCA 59.903 45.455 0.00 0.00 31.94 3.53
2508 2860 3.427368 CGTCATGATCGCCATTTTTCCAA 60.427 43.478 0.00 0.00 31.94 3.53
2509 2861 4.107622 GTCATGATCGCCATTTTTCCAAG 58.892 43.478 0.00 0.00 31.94 3.61
2514 2866 0.596082 CGCCATTTTTCCAAGGACGT 59.404 50.000 0.00 0.00 0.00 4.34
2534 2886 1.583967 CCTCGTCATGAGTCGCGAC 60.584 63.158 31.30 31.30 43.64 5.19
2554 2912 6.645415 CGCGACTTTCCTTTTGACCTATATAT 59.355 38.462 0.00 0.00 0.00 0.86
2555 2913 7.359264 CGCGACTTTCCTTTTGACCTATATATG 60.359 40.741 0.00 0.00 0.00 1.78
2556 2914 7.441458 GCGACTTTCCTTTTGACCTATATATGT 59.559 37.037 0.00 0.00 0.00 2.29
2580 2938 1.066071 TCGTCATGGGTCGCCATTTTA 60.066 47.619 0.00 0.00 0.00 1.52
2593 2969 7.229907 GGGTCGCCATTTTATCCTCTAATTTAA 59.770 37.037 0.00 0.00 0.00 1.52
2737 3123 0.176910 CTCGCTCCTTCCTTCCTTCC 59.823 60.000 0.00 0.00 0.00 3.46
2738 3124 1.222113 CGCTCCTTCCTTCCTTCCC 59.778 63.158 0.00 0.00 0.00 3.97
2739 3125 1.553690 CGCTCCTTCCTTCCTTCCCA 61.554 60.000 0.00 0.00 0.00 4.37
2742 3128 1.705186 CTCCTTCCTTCCTTCCCACAA 59.295 52.381 0.00 0.00 0.00 3.33
2743 3129 1.423921 TCCTTCCTTCCTTCCCACAAC 59.576 52.381 0.00 0.00 0.00 3.32
2744 3130 1.547901 CCTTCCTTCCTTCCCACAACC 60.548 57.143 0.00 0.00 0.00 3.77
2745 3131 1.144913 CTTCCTTCCTTCCCACAACCA 59.855 52.381 0.00 0.00 0.00 3.67
2746 3132 0.476771 TCCTTCCTTCCCACAACCAC 59.523 55.000 0.00 0.00 0.00 4.16
2748 3134 1.545651 CCTTCCTTCCCACAACCACTC 60.546 57.143 0.00 0.00 0.00 3.51
2749 3135 0.476771 TTCCTTCCCACAACCACTCC 59.523 55.000 0.00 0.00 0.00 3.85
2781 3394 1.675641 CCCCGTTTCAAGCCTCAGG 60.676 63.158 0.00 0.00 0.00 3.86
2906 3562 2.034305 CGCCCAACGCTACTCTATAACT 59.966 50.000 0.00 0.00 34.21 2.24
2961 3617 4.441634 GGATAACTCACCAGTACGCTTCAT 60.442 45.833 0.00 0.00 30.14 2.57
2993 3652 8.475331 TTGCTAAACTGCTGTTTATAGTACTC 57.525 34.615 23.85 7.87 44.57 2.59
2994 3653 7.039882 TGCTAAACTGCTGTTTATAGTACTCC 58.960 38.462 23.85 7.59 44.57 3.85
2996 3655 6.622427 AAACTGCTGTTTATAGTACTCCCT 57.378 37.500 18.85 0.00 43.76 4.20
2997 3656 5.855740 ACTGCTGTTTATAGTACTCCCTC 57.144 43.478 0.00 0.00 0.00 4.30
3000 3659 5.767670 TGCTGTTTATAGTACTCCCTCTCT 58.232 41.667 0.00 0.00 0.00 3.10
3001 3660 6.195700 TGCTGTTTATAGTACTCCCTCTCTT 58.804 40.000 0.00 0.00 0.00 2.85
3002 3661 6.321690 TGCTGTTTATAGTACTCCCTCTCTTC 59.678 42.308 0.00 0.00 0.00 2.87
3003 3662 6.321690 GCTGTTTATAGTACTCCCTCTCTTCA 59.678 42.308 0.00 0.00 0.00 3.02
3004 3663 7.642082 TGTTTATAGTACTCCCTCTCTTCAC 57.358 40.000 0.00 0.00 0.00 3.18
3005 3664 7.411808 TGTTTATAGTACTCCCTCTCTTCACT 58.588 38.462 0.00 0.00 0.00 3.41
3006 3665 7.894364 TGTTTATAGTACTCCCTCTCTTCACTT 59.106 37.037 0.00 0.00 0.00 3.16
3007 3666 8.751242 GTTTATAGTACTCCCTCTCTTCACTTT 58.249 37.037 0.00 0.00 0.00 2.66
3008 3667 8.896722 TTATAGTACTCCCTCTCTTCACTTTT 57.103 34.615 0.00 0.00 0.00 2.27
3009 3668 9.986157 TTATAGTACTCCCTCTCTTCACTTTTA 57.014 33.333 0.00 0.00 0.00 1.52
3012 3671 8.896722 AGTACTCCCTCTCTTCACTTTTATAA 57.103 34.615 0.00 0.00 0.00 0.98
3013 3672 8.973182 AGTACTCCCTCTCTTCACTTTTATAAG 58.027 37.037 0.00 0.00 37.40 1.73
3014 3673 7.189079 ACTCCCTCTCTTCACTTTTATAAGG 57.811 40.000 0.00 0.00 35.61 2.69
3015 3674 5.990668 TCCCTCTCTTCACTTTTATAAGGC 58.009 41.667 0.00 0.00 35.61 4.35
3016 3675 5.726793 TCCCTCTCTTCACTTTTATAAGGCT 59.273 40.000 0.00 0.00 35.61 4.58
3017 3676 6.901300 TCCCTCTCTTCACTTTTATAAGGCTA 59.099 38.462 0.00 0.00 35.61 3.93
3018 3677 7.569111 TCCCTCTCTTCACTTTTATAAGGCTAT 59.431 37.037 0.00 0.00 35.61 2.97
3019 3678 7.659390 CCCTCTCTTCACTTTTATAAGGCTATG 59.341 40.741 0.00 0.00 35.61 2.23
3020 3679 8.207545 CCTCTCTTCACTTTTATAAGGCTATGT 58.792 37.037 0.00 0.00 35.61 2.29
3021 3680 8.948631 TCTCTTCACTTTTATAAGGCTATGTG 57.051 34.615 0.00 0.00 35.61 3.21
3022 3681 7.987458 TCTCTTCACTTTTATAAGGCTATGTGG 59.013 37.037 0.00 0.00 35.61 4.17
3023 3682 7.857456 TCTTCACTTTTATAAGGCTATGTGGA 58.143 34.615 0.00 0.00 35.61 4.02
3024 3683 7.769044 TCTTCACTTTTATAAGGCTATGTGGAC 59.231 37.037 0.00 0.00 35.61 4.02
3025 3684 6.046593 TCACTTTTATAAGGCTATGTGGACG 58.953 40.000 0.00 0.00 35.61 4.79
3026 3685 5.815740 CACTTTTATAAGGCTATGTGGACGT 59.184 40.000 0.00 0.00 35.61 4.34
3027 3686 6.315393 CACTTTTATAAGGCTATGTGGACGTT 59.685 38.462 0.00 0.00 35.61 3.99
3028 3687 6.882678 ACTTTTATAAGGCTATGTGGACGTTT 59.117 34.615 0.00 0.00 35.61 3.60
3029 3688 6.913873 TTTATAAGGCTATGTGGACGTTTC 57.086 37.500 0.00 0.00 0.00 2.78
3030 3689 2.851263 AAGGCTATGTGGACGTTTCA 57.149 45.000 0.00 0.00 0.00 2.69
3031 3690 2.386661 AGGCTATGTGGACGTTTCAG 57.613 50.000 0.00 0.00 0.00 3.02
3032 3691 1.899814 AGGCTATGTGGACGTTTCAGA 59.100 47.619 0.00 0.00 0.00 3.27
3033 3692 2.000447 GGCTATGTGGACGTTTCAGAC 59.000 52.381 0.00 0.00 0.00 3.51
3041 3700 3.318875 CGTTTCAGACGCTGTGCA 58.681 55.556 6.72 0.00 45.86 4.57
3042 3701 1.641140 CGTTTCAGACGCTGTGCAA 59.359 52.632 0.00 0.00 45.86 4.08
3043 3702 0.027455 CGTTTCAGACGCTGTGCAAA 59.973 50.000 0.00 0.00 45.86 3.68
3044 3703 1.530852 CGTTTCAGACGCTGTGCAAAA 60.531 47.619 0.00 0.00 45.86 2.44
3045 3704 1.846175 GTTTCAGACGCTGTGCAAAAC 59.154 47.619 0.00 6.49 32.61 2.43
3046 3705 1.090728 TTCAGACGCTGTGCAAAACA 58.909 45.000 0.00 0.00 37.22 2.83
3057 3716 4.462508 TGTGCAAAACAGGACAATTTCA 57.537 36.364 0.00 0.00 36.89 2.69
3058 3717 4.180057 TGTGCAAAACAGGACAATTTCAC 58.820 39.130 0.00 0.00 36.89 3.18
3059 3718 4.081752 TGTGCAAAACAGGACAATTTCACT 60.082 37.500 0.00 0.00 36.89 3.41
3060 3719 4.869861 GTGCAAAACAGGACAATTTCACTT 59.130 37.500 0.00 0.00 0.00 3.16
3061 3720 4.869297 TGCAAAACAGGACAATTTCACTTG 59.131 37.500 0.00 0.00 0.00 3.16
3062 3721 4.869861 GCAAAACAGGACAATTTCACTTGT 59.130 37.500 0.00 0.00 41.92 3.16
3071 3730 5.811399 ACAATTTCACTTGTCTGAAACGA 57.189 34.783 0.00 0.00 41.76 3.85
3072 3731 5.569413 ACAATTTCACTTGTCTGAAACGAC 58.431 37.500 0.00 0.00 41.76 4.34
3073 3732 5.354234 ACAATTTCACTTGTCTGAAACGACT 59.646 36.000 0.00 0.00 41.76 4.18
3074 3733 6.128007 ACAATTTCACTTGTCTGAAACGACTT 60.128 34.615 0.00 0.00 41.76 3.01
3075 3734 7.065324 ACAATTTCACTTGTCTGAAACGACTTA 59.935 33.333 0.00 0.00 41.76 2.24
3076 3735 7.730364 ATTTCACTTGTCTGAAACGACTTAT 57.270 32.000 0.00 0.00 41.76 1.73
3077 3736 8.827177 ATTTCACTTGTCTGAAACGACTTATA 57.173 30.769 0.00 0.00 41.76 0.98
3078 3737 8.651391 TTTCACTTGTCTGAAACGACTTATAA 57.349 30.769 0.00 0.00 35.63 0.98
3079 3738 8.651391 TTCACTTGTCTGAAACGACTTATAAA 57.349 30.769 0.00 0.00 35.00 1.40
3080 3739 8.651391 TCACTTGTCTGAAACGACTTATAAAA 57.349 30.769 0.00 0.00 35.00 1.52
3081 3740 9.100554 TCACTTGTCTGAAACGACTTATAAAAA 57.899 29.630 0.00 0.00 35.00 1.94
3082 3741 9.878599 CACTTGTCTGAAACGACTTATAAAAAT 57.121 29.630 0.00 0.00 35.00 1.82
3091 3750 9.481800 GAAACGACTTATAAAAATAAACGGAGG 57.518 33.333 0.00 0.00 0.00 4.30
3092 3751 7.543947 ACGACTTATAAAAATAAACGGAGGG 57.456 36.000 0.00 0.00 0.00 4.30
3093 3752 7.330262 ACGACTTATAAAAATAAACGGAGGGA 58.670 34.615 0.00 0.00 0.00 4.20
3094 3753 7.493645 ACGACTTATAAAAATAAACGGAGGGAG 59.506 37.037 0.00 0.00 0.00 4.30
3095 3754 7.493645 CGACTTATAAAAATAAACGGAGGGAGT 59.506 37.037 0.00 0.00 0.00 3.85
3096 3755 9.822185 GACTTATAAAAATAAACGGAGGGAGTA 57.178 33.333 0.00 0.00 0.00 2.59
3097 3756 9.605275 ACTTATAAAAATAAACGGAGGGAGTAC 57.395 33.333 0.00 0.00 0.00 2.73
3098 3757 8.962884 TTATAAAAATAAACGGAGGGAGTACC 57.037 34.615 0.00 0.00 40.67 3.34
3099 3758 4.914177 AAAATAAACGGAGGGAGTACCA 57.086 40.909 0.00 0.00 43.89 3.25
3100 3759 4.482952 AAATAAACGGAGGGAGTACCAG 57.517 45.455 0.00 0.00 43.89 4.00
3101 3760 1.188863 TAAACGGAGGGAGTACCAGC 58.811 55.000 0.00 0.00 43.89 4.85
3102 3761 1.885163 AAACGGAGGGAGTACCAGCG 61.885 60.000 0.00 0.00 43.89 5.18
3103 3762 2.754658 CGGAGGGAGTACCAGCGT 60.755 66.667 0.00 0.00 43.89 5.07
3104 3763 2.348888 CGGAGGGAGTACCAGCGTT 61.349 63.158 0.00 0.00 43.89 4.84
3105 3764 1.218316 GGAGGGAGTACCAGCGTTG 59.782 63.158 0.00 0.00 43.89 4.10
3145 3804 1.906824 TGACACTGACCCGGAGACC 60.907 63.158 0.73 0.00 0.00 3.85
3146 3805 1.606889 GACACTGACCCGGAGACCT 60.607 63.158 0.73 0.00 0.00 3.85
3147 3806 1.878656 GACACTGACCCGGAGACCTG 61.879 65.000 0.73 0.00 0.00 4.00
3148 3807 1.908793 CACTGACCCGGAGACCTGT 60.909 63.158 0.73 0.00 0.00 4.00
3221 3884 1.067821 CCCTCGCCAACAGACTAGATC 59.932 57.143 0.00 0.00 0.00 2.75
3371 4049 3.773154 GGCCTCTCCCTCCCTCCT 61.773 72.222 0.00 0.00 0.00 3.69
3372 4050 2.123033 GCCTCTCCCTCCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
3438 4116 4.771903 TGTTAGTTGTTGCCAGTTACAGA 58.228 39.130 0.00 0.00 0.00 3.41
3439 4117 4.814234 TGTTAGTTGTTGCCAGTTACAGAG 59.186 41.667 0.00 0.00 0.00 3.35
3440 4118 3.560636 AGTTGTTGCCAGTTACAGAGT 57.439 42.857 0.00 0.00 0.00 3.24
3500 4179 0.830444 TACAAGGGACACGACAGCCT 60.830 55.000 0.00 0.00 0.00 4.58
3559 4247 2.423538 CCAACCTTTATTCCTTGAGCCG 59.576 50.000 0.00 0.00 0.00 5.52
3563 4251 2.880890 CCTTTATTCCTTGAGCCGGATG 59.119 50.000 5.05 0.00 0.00 3.51
3594 4306 2.033194 CACGGACGCCTTTTCTCCC 61.033 63.158 0.00 0.00 0.00 4.30
3601 4313 1.954382 ACGCCTTTTCTCCCTTTCAAC 59.046 47.619 0.00 0.00 0.00 3.18
3622 4334 1.601430 GATTCAGAGATGCCTTTCGCC 59.399 52.381 0.00 0.00 36.24 5.54
3624 4336 1.222936 CAGAGATGCCTTTCGCCCT 59.777 57.895 0.00 0.00 36.24 5.19
3625 4337 0.465705 CAGAGATGCCTTTCGCCCTA 59.534 55.000 0.00 0.00 36.24 3.53
3628 4349 0.839946 AGATGCCTTTCGCCCTACAT 59.160 50.000 0.00 0.00 36.24 2.29
3670 4391 3.911661 GCTAATGGAGCCATGCTTTAG 57.088 47.619 2.18 3.37 46.41 1.85
3674 4395 4.510167 AATGGAGCCATGCTTTAGTACT 57.490 40.909 2.18 0.00 39.88 2.73
3777 4498 2.231964 TCACGTCACAACTATACCCACC 59.768 50.000 0.00 0.00 0.00 4.61
3781 4502 2.756760 GTCACAACTATACCCACCGAGA 59.243 50.000 0.00 0.00 0.00 4.04
3783 4504 2.758979 CACAACTATACCCACCGAGAGT 59.241 50.000 0.00 0.00 0.00 3.24
3784 4505 2.758979 ACAACTATACCCACCGAGAGTG 59.241 50.000 0.00 0.00 46.83 3.51
3834 4556 6.173339 TGCCCTACAGACTTCTTTATTTCTG 58.827 40.000 0.00 0.00 41.14 3.02
3835 4557 6.013725 TGCCCTACAGACTTCTTTATTTCTGA 60.014 38.462 4.51 0.00 38.19 3.27
3836 4558 7.051000 GCCCTACAGACTTCTTTATTTCTGAT 58.949 38.462 4.51 0.00 38.19 2.90
3837 4559 7.011857 GCCCTACAGACTTCTTTATTTCTGATG 59.988 40.741 4.51 0.00 38.19 3.07
3838 4560 8.260818 CCCTACAGACTTCTTTATTTCTGATGA 58.739 37.037 4.51 0.00 38.19 2.92
3938 4675 4.097892 ACATTTAAGGCCAACCGATCAATC 59.902 41.667 5.01 0.00 42.76 2.67
3939 4676 3.358111 TTAAGGCCAACCGATCAATCA 57.642 42.857 5.01 0.00 42.76 2.57
3974 4722 4.697352 CAGATCAGATTTTCCGGTCTTTGT 59.303 41.667 0.00 0.00 0.00 2.83
3997 4746 4.638421 TGGTCCGATGGATAAACAAATCAC 59.362 41.667 0.00 0.00 32.73 3.06
4047 4796 4.040217 GGTCTCTCTGCAATCTATCCACAT 59.960 45.833 0.00 0.00 0.00 3.21
4199 4948 6.462487 CCCATCGACACATAACTATGGTTAGT 60.462 42.308 7.76 0.43 40.65 2.24
4204 4953 7.703621 TCGACACATAACTATGGTTAGTTTAGC 59.296 37.037 7.76 0.00 44.48 3.09
4222 4971 0.458716 GCGCTAGAACCACTGAGTCC 60.459 60.000 0.00 0.00 0.00 3.85
4381 5144 0.731417 CCTTTCCTTCAGCTGATGCG 59.269 55.000 19.04 13.41 45.42 4.73
4446 5209 1.000283 CATCGGTATGGACTGCTCTCC 60.000 57.143 0.00 0.00 0.00 3.71
4622 5395 6.571150 GCATTGCTAACCATCCCTATCATTTC 60.571 42.308 0.16 0.00 0.00 2.17
4623 5396 5.645056 TGCTAACCATCCCTATCATTTCA 57.355 39.130 0.00 0.00 0.00 2.69
4624 5397 5.624159 TGCTAACCATCCCTATCATTTCAG 58.376 41.667 0.00 0.00 0.00 3.02
4625 5398 5.132648 TGCTAACCATCCCTATCATTTCAGT 59.867 40.000 0.00 0.00 0.00 3.41
4626 5399 6.328934 TGCTAACCATCCCTATCATTTCAGTA 59.671 38.462 0.00 0.00 0.00 2.74
4661 5439 7.540745 ACTGCGGAATTATGTTTTTACACAATC 59.459 33.333 0.00 0.00 0.00 2.67
4884 5664 5.423886 GTTCCAAACAAAAGAACATTCCCA 58.576 37.500 0.00 0.00 39.71 4.37
5047 8062 5.148651 TCACTAGCCCAAGAAAACTAGAC 57.851 43.478 0.00 0.00 36.45 2.59
5055 8071 6.431234 AGCCCAAGAAAACTAGACTTTGTATG 59.569 38.462 0.00 0.00 0.00 2.39
5083 8099 7.081349 TGATAAACTGGCAATAAACTGAAACG 58.919 34.615 0.00 0.00 0.00 3.60
5095 8111 0.232303 CTGAAACGAACTGTCACCGC 59.768 55.000 0.00 0.00 0.00 5.68
5097 8113 1.485032 GAAACGAACTGTCACCGCGT 61.485 55.000 4.92 0.00 36.68 6.01
5098 8114 1.758319 AAACGAACTGTCACCGCGTG 61.758 55.000 4.92 3.64 35.16 5.34
5174 8195 2.032178 GCAAGACGTGAAGACTTTTGCT 59.968 45.455 11.16 0.00 32.78 3.91
5224 8245 4.008074 ACTGAATCGCATATACCCCTTG 57.992 45.455 0.00 0.00 0.00 3.61
5275 8300 7.254727 CCAAACCAAAACTGACACCATAAATTG 60.255 37.037 0.00 0.00 0.00 2.32
5276 8301 6.723298 ACCAAAACTGACACCATAAATTGA 57.277 33.333 0.00 0.00 0.00 2.57
5350 8390 1.451028 GATGCTGGCAGGAGTGTCC 60.451 63.158 17.64 0.00 36.58 4.02
5383 8423 4.351111 AGGGAGAACAATACCTCAAACTGT 59.649 41.667 0.00 0.00 0.00 3.55
5402 8446 1.270274 GTGGCATGACAAGTGCATTGA 59.730 47.619 0.58 0.00 44.25 2.57
5762 8814 3.742640 GCAGGACTGATCATGGTTACCTC 60.743 52.174 2.07 0.00 37.11 3.85
5952 9031 5.187381 TCCAATCTCAGATCCTGATATGCTC 59.813 44.000 0.00 0.00 39.92 4.26
6030 9112 1.176527 CACTTGCCAAGGTACCCATG 58.823 55.000 8.74 8.35 0.00 3.66
6032 9114 1.271926 ACTTGCCAAGGTACCCATGAC 60.272 52.381 8.74 1.14 0.00 3.06
6049 9131 2.355197 TGACGTCCCATGTGCATTTAG 58.645 47.619 14.12 0.00 0.00 1.85
6216 9322 1.447317 CGCTGTCAACCAAGGCAAGT 61.447 55.000 0.00 0.00 0.00 3.16
6227 9333 2.939103 CCAAGGCAAGTATTCTCTTCCG 59.061 50.000 0.00 0.00 0.00 4.30
6231 9337 3.010420 GGCAAGTATTCTCTTCCGCTTT 58.990 45.455 0.00 0.00 0.00 3.51
6287 9393 9.291664 GATTTTCAGTGTACTCATACTACAGTC 57.708 37.037 0.00 0.00 32.00 3.51
6288 9394 7.754851 TTTCAGTGTACTCATACTACAGTCA 57.245 36.000 0.00 0.00 32.00 3.41
6653 9762 5.010012 GGTTTCATCATCACAACAACTTCCT 59.990 40.000 0.00 0.00 0.00 3.36
6654 9763 6.206634 GGTTTCATCATCACAACAACTTCCTA 59.793 38.462 0.00 0.00 0.00 2.94
6779 9889 2.219674 CGAAAGCATAGCAAGTCGATCC 59.780 50.000 0.00 0.00 32.82 3.36
6843 9957 2.266554 CTGAGACGAGGTGAATTGAGC 58.733 52.381 0.00 0.00 0.00 4.26
6848 9962 2.744202 GACGAGGTGAATTGAGCAATGT 59.256 45.455 0.00 0.00 0.00 2.71
6851 9965 1.547372 AGGTGAATTGAGCAATGTGGC 59.453 47.619 0.00 0.00 0.00 5.01
6859 9973 1.068895 TGAGCAATGTGGCTTTGGTTG 59.931 47.619 0.00 0.00 45.99 3.77
6903 10017 1.396996 GCTGTATGTAAAGTGCCGTGG 59.603 52.381 0.00 0.00 0.00 4.94
6991 10105 0.509929 GTTTTCGTAGCGCCGTCTTT 59.490 50.000 2.29 0.00 0.00 2.52
6993 10107 0.509499 TTTCGTAGCGCCGTCTTTTG 59.491 50.000 2.29 0.00 0.00 2.44
7002 10117 1.079888 CCGTCTTTTGCATTGGGGC 60.080 57.895 0.00 0.00 0.00 5.80
7154 10269 6.013379 TGGCAAATGTAAGATAAACTGGGAA 58.987 36.000 0.00 0.00 0.00 3.97
7258 10373 0.400213 TGGTTCGAATGGCAAGTCCT 59.600 50.000 0.00 0.00 35.26 3.85
7318 10433 1.616865 AGAACGACCGGAACATCTTCA 59.383 47.619 9.46 0.00 0.00 3.02
7324 10439 0.389817 CCGGAACATCTTCACTGCGA 60.390 55.000 0.00 0.00 0.00 5.10
7634 10749 3.849951 CCAGTACTCCGCGGCCAT 61.850 66.667 23.51 10.81 0.00 4.40
7726 10841 3.137544 TCCTCCCAAGTGCAAGTTCTTTA 59.862 43.478 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 97 9.611284 TTTTCATCTATGAGAACAAACATTTCG 57.389 29.630 0.00 0.00 38.19 3.46
188 195 6.702329 AGATTGTATCTCGAAACCAAAGACT 58.298 36.000 0.00 0.00 33.42 3.24
192 199 6.640518 AGCTAGATTGTATCTCGAAACCAAA 58.359 36.000 0.00 0.00 40.76 3.28
209 216 6.426646 AATCAAGTCGGGATTTAGCTAGAT 57.573 37.500 0.00 0.00 31.10 1.98
215 222 7.710907 TCAAGACATAATCAAGTCGGGATTTAG 59.289 37.037 0.00 0.00 39.67 1.85
222 229 5.281727 TCGATCAAGACATAATCAAGTCGG 58.718 41.667 0.00 0.00 39.67 4.79
230 247 7.332926 GGAATGTAGCATCGATCAAGACATAAT 59.667 37.037 0.00 0.00 0.00 1.28
241 258 5.480642 AATCTCAGGAATGTAGCATCGAT 57.519 39.130 0.00 0.00 0.00 3.59
251 268 9.434420 GGATCTCTATGTAAAATCTCAGGAATG 57.566 37.037 0.00 0.00 0.00 2.67
270 287 5.649782 ATGAAAATTTTGCACGGATCTCT 57.350 34.783 8.47 0.00 0.00 3.10
273 290 6.365789 TCTGAAATGAAAATTTTGCACGGATC 59.634 34.615 8.47 4.60 0.00 3.36
306 328 7.204604 TCAAGTGACGTAACATGTAAGAAAGA 58.795 34.615 5.68 0.00 0.00 2.52
333 355 2.234168 GGGAAAACCTAGCGAAGTCTCT 59.766 50.000 0.00 0.00 35.85 3.10
346 368 4.514781 AACTGAAATTAGCGGGAAAACC 57.485 40.909 0.00 0.00 0.00 3.27
351 373 6.827586 AAATGTTAACTGAAATTAGCGGGA 57.172 33.333 7.22 0.00 0.00 5.14
352 374 7.383843 ACAAAAATGTTAACTGAAATTAGCGGG 59.616 33.333 7.22 0.00 0.00 6.13
353 375 8.213812 CACAAAAATGTTAACTGAAATTAGCGG 58.786 33.333 7.22 0.00 0.00 5.52
354 376 8.751335 ACACAAAAATGTTAACTGAAATTAGCG 58.249 29.630 7.22 0.00 0.00 4.26
388 448 3.000041 ACGTGTACAGGTTACATGCATG 59.000 45.455 25.09 25.09 37.83 4.06
390 450 2.823924 ACGTGTACAGGTTACATGCA 57.176 45.000 15.24 0.00 37.83 3.96
460 523 1.676006 AGGCAATTCGAAATTAGCGGG 59.324 47.619 0.00 0.00 0.00 6.13
512 576 6.565811 CGAATGATTTCTCACAACCTTTCGAA 60.566 38.462 0.00 0.00 38.06 3.71
514 578 5.082059 CGAATGATTTCTCACAACCTTTCG 58.918 41.667 0.00 0.00 33.03 3.46
660 743 3.195698 GGATCCAGCCGTGCGTTC 61.196 66.667 6.95 0.00 0.00 3.95
710 793 4.980805 TGACTTGTGTCGCCGGGC 62.981 66.667 9.54 9.54 45.70 6.13
751 834 9.478019 GTTTTTGTTTTTGTTTTTGTTTTTGGG 57.522 25.926 0.00 0.00 0.00 4.12
798 881 9.667107 TGTGGTACAATTATTTTCTTCTAGGAG 57.333 33.333 0.00 0.00 44.16 3.69
819 902 8.317776 AGCCCAAATATTAATGTTAATGTGGT 57.682 30.769 10.65 0.00 35.20 4.16
836 919 8.729756 GCAGTTTTCAAAATATTAAGCCCAAAT 58.270 29.630 0.00 0.00 0.00 2.32
837 920 7.095439 CGCAGTTTTCAAAATATTAAGCCCAAA 60.095 33.333 0.00 0.00 0.00 3.28
840 923 5.290885 CCGCAGTTTTCAAAATATTAAGCCC 59.709 40.000 0.00 0.00 0.00 5.19
841 924 5.220397 GCCGCAGTTTTCAAAATATTAAGCC 60.220 40.000 0.00 0.00 0.00 4.35
842 925 5.220397 GGCCGCAGTTTTCAAAATATTAAGC 60.220 40.000 0.00 0.00 0.00 3.09
843 926 5.290885 GGGCCGCAGTTTTCAAAATATTAAG 59.709 40.000 0.00 0.00 0.00 1.85
972 1055 2.279073 CGGGGAGGAGCAGAGGTA 59.721 66.667 0.00 0.00 0.00 3.08
1187 1283 3.414700 GCGGCGTGAGTGGAAGTG 61.415 66.667 9.37 0.00 0.00 3.16
1243 1339 4.171754 GCTATACTATACCGGGCGAAAAG 58.828 47.826 6.32 0.00 0.00 2.27
1260 1356 5.868801 TGAATCGAATCGAATGCATGCTATA 59.131 36.000 20.33 0.00 39.99 1.31
1263 1359 2.874086 TGAATCGAATCGAATGCATGCT 59.126 40.909 20.33 0.00 39.99 3.79
1264 1360 3.257745 TGAATCGAATCGAATGCATGC 57.742 42.857 10.12 11.82 39.99 4.06
1265 1361 6.036844 AGGATATGAATCGAATCGAATGCATG 59.963 38.462 20.38 0.00 39.99 4.06
1266 1362 6.111382 AGGATATGAATCGAATCGAATGCAT 58.889 36.000 10.12 14.94 39.99 3.96
1267 1363 5.482006 AGGATATGAATCGAATCGAATGCA 58.518 37.500 10.12 8.60 39.99 3.96
1268 1364 5.006165 GGAGGATATGAATCGAATCGAATGC 59.994 44.000 10.12 3.47 39.99 3.56
1269 1365 5.230936 CGGAGGATATGAATCGAATCGAATG 59.769 44.000 10.12 0.00 39.99 2.67
1270 1366 5.344066 CGGAGGATATGAATCGAATCGAAT 58.656 41.667 10.12 0.00 39.99 3.34
1271 1367 4.733850 CGGAGGATATGAATCGAATCGAA 58.266 43.478 10.12 0.00 39.99 3.71
1272 1368 3.427638 GCGGAGGATATGAATCGAATCGA 60.428 47.826 8.12 8.12 41.13 3.59
1273 1369 2.854777 GCGGAGGATATGAATCGAATCG 59.145 50.000 0.00 0.00 32.44 3.34
1274 1370 3.118956 AGGCGGAGGATATGAATCGAATC 60.119 47.826 0.00 0.00 32.44 2.52
1284 1380 3.052081 GCGTGAGGCGGAGGATAT 58.948 61.111 0.00 0.00 41.69 1.63
1315 1411 0.665835 TTGCTTTGTTCGTGCGGATT 59.334 45.000 0.00 0.00 0.00 3.01
1318 1414 0.845768 CTTTTGCTTTGTTCGTGCGG 59.154 50.000 0.00 0.00 0.00 5.69
1319 1415 1.544686 ACTTTTGCTTTGTTCGTGCG 58.455 45.000 0.00 0.00 0.00 5.34
1350 1446 9.509855 CCAGAGCGATGATACTACTATATTTTC 57.490 37.037 0.00 0.00 0.00 2.29
1357 1453 5.230323 ACTCCAGAGCGATGATACTACTA 57.770 43.478 0.00 0.00 0.00 1.82
1362 1458 3.413327 TCCTACTCCAGAGCGATGATAC 58.587 50.000 0.00 0.00 0.00 2.24
1363 1459 3.073209 ACTCCTACTCCAGAGCGATGATA 59.927 47.826 0.00 0.00 33.18 2.15
1367 1463 2.224670 CCTACTCCTACTCCAGAGCGAT 60.225 54.545 0.00 0.00 33.18 4.58
1368 1464 1.141254 CCTACTCCTACTCCAGAGCGA 59.859 57.143 0.00 0.00 33.18 4.93
1369 1465 1.600023 CCTACTCCTACTCCAGAGCG 58.400 60.000 0.00 0.00 33.18 5.03
1370 1466 1.989706 CCCTACTCCTACTCCAGAGC 58.010 60.000 0.00 0.00 33.18 4.09
1371 1467 1.497286 AGCCCTACTCCTACTCCAGAG 59.503 57.143 0.00 0.00 36.16 3.35
1372 1468 1.215673 CAGCCCTACTCCTACTCCAGA 59.784 57.143 0.00 0.00 0.00 3.86
1374 1470 1.063867 GTCAGCCCTACTCCTACTCCA 60.064 57.143 0.00 0.00 0.00 3.86
1376 1472 1.694844 GGTCAGCCCTACTCCTACTC 58.305 60.000 0.00 0.00 0.00 2.59
1443 1614 1.947456 GCATATGAACGTCCCTTTCCC 59.053 52.381 6.97 0.00 0.00 3.97
1465 1638 3.191539 CTTCCTCCGCAAGCGAGC 61.192 66.667 16.97 0.00 42.83 5.03
1477 1650 1.220206 CATGCACCTCTCGCTTCCT 59.780 57.895 0.00 0.00 0.00 3.36
1561 1734 2.197605 AAAAGCGTCCAAACCCCGG 61.198 57.895 0.00 0.00 0.00 5.73
1562 1735 1.007849 CAAAAGCGTCCAAACCCCG 60.008 57.895 0.00 0.00 0.00 5.73
1563 1736 0.462375 AACAAAAGCGTCCAAACCCC 59.538 50.000 0.00 0.00 0.00 4.95
1598 1771 2.746277 GCGTGCGGGAATGGAAGT 60.746 61.111 0.00 0.00 0.00 3.01
1641 1825 3.971032 AATACCGTACGTGTAGCTACC 57.029 47.619 21.01 11.25 0.00 3.18
1648 1832 3.190535 ACGTAGGAAAATACCGTACGTGT 59.809 43.478 15.21 13.81 42.40 4.49
1651 1835 4.963953 CAGTACGTAGGAAAATACCGTACG 59.036 45.833 8.69 8.69 38.80 3.67
1659 1843 6.293698 AGGAAAACACAGTACGTAGGAAAAT 58.706 36.000 0.00 0.00 0.00 1.82
1662 1846 4.942761 AGGAAAACACAGTACGTAGGAA 57.057 40.909 0.00 0.00 0.00 3.36
1663 1847 4.942761 AAGGAAAACACAGTACGTAGGA 57.057 40.909 0.00 0.00 0.00 2.94
1664 1848 5.996669 AAAAGGAAAACACAGTACGTAGG 57.003 39.130 0.00 0.00 0.00 3.18
1705 1889 1.268625 GCCAAAAGAAAGTACGTGGGG 59.731 52.381 0.00 0.00 0.00 4.96
1706 1890 2.031157 CAGCCAAAAGAAAGTACGTGGG 60.031 50.000 0.00 0.00 0.00 4.61
1708 1892 2.875933 TCCAGCCAAAAGAAAGTACGTG 59.124 45.455 0.00 0.00 0.00 4.49
1714 1898 7.000472 TCATCCTATATCCAGCCAAAAGAAAG 59.000 38.462 0.00 0.00 0.00 2.62
1751 1937 4.574013 CAGTTGCTCAATCCCTCATCTTAC 59.426 45.833 0.00 0.00 0.00 2.34
1770 1956 4.811557 GCATTTATCTTACTCCGCTCAGTT 59.188 41.667 0.00 0.00 0.00 3.16
1772 1958 4.626042 AGCATTTATCTTACTCCGCTCAG 58.374 43.478 0.00 0.00 0.00 3.35
1777 1963 5.504665 CCAAGCAAGCATTTATCTTACTCCG 60.505 44.000 0.00 0.00 0.00 4.63
1838 2024 1.273886 ACGAGGGAAGCAGAGAGAAAC 59.726 52.381 0.00 0.00 0.00 2.78
1842 2028 0.967887 TGGACGAGGGAAGCAGAGAG 60.968 60.000 0.00 0.00 0.00 3.20
1894 2084 5.916318 TCCAATATAAATGCTGGCCAAAAG 58.084 37.500 7.01 0.00 0.00 2.27
1929 2232 0.379669 CATGCGAAATCTGGAGCACC 59.620 55.000 0.00 0.00 42.73 5.01
1955 2258 5.671493 AGTACTAGCAGAAACAAACACTGT 58.329 37.500 0.00 0.00 41.27 3.55
1976 2310 9.249053 AGATGAAGTCACCGATCAATATATAGT 57.751 33.333 0.00 0.00 0.00 2.12
1977 2311 9.513727 CAGATGAAGTCACCGATCAATATATAG 57.486 37.037 0.00 0.00 0.00 1.31
1978 2312 9.025041 ACAGATGAAGTCACCGATCAATATATA 57.975 33.333 0.00 0.00 0.00 0.86
1979 2313 7.901029 ACAGATGAAGTCACCGATCAATATAT 58.099 34.615 0.00 0.00 0.00 0.86
1985 2319 5.351458 CATTACAGATGAAGTCACCGATCA 58.649 41.667 0.00 0.00 0.00 2.92
1990 2324 5.627499 TTTGCATTACAGATGAAGTCACC 57.373 39.130 0.00 0.00 0.00 4.02
2055 2391 1.600485 CCTCGGTTGTTACGCAGTTTT 59.400 47.619 0.00 0.00 37.78 2.43
2117 2453 2.747989 GGGAGGGTCGTCAAATCTTTTC 59.252 50.000 0.00 0.00 0.00 2.29
2153 2490 4.680440 GCCAACAGAGAAAAAGGCAAAAGA 60.680 41.667 0.00 0.00 41.63 2.52
2159 2496 1.332195 AGGCCAACAGAGAAAAAGGC 58.668 50.000 5.01 0.00 41.29 4.35
2243 2582 2.048597 CGTACGGCTCAGGTTGCA 60.049 61.111 7.57 0.00 0.00 4.08
2312 2653 1.438562 GAGAGGACCGAGTAGGCGAC 61.439 65.000 0.00 0.00 46.52 5.19
2314 2655 1.153127 AGAGAGGACCGAGTAGGCG 60.153 63.158 0.00 0.00 46.52 5.52
2318 2659 1.675116 CGACACAGAGAGGACCGAGTA 60.675 57.143 0.00 0.00 0.00 2.59
2319 2660 0.956410 CGACACAGAGAGGACCGAGT 60.956 60.000 0.00 0.00 0.00 4.18
2320 2661 1.649390 CCGACACAGAGAGGACCGAG 61.649 65.000 0.00 0.00 0.00 4.63
2323 2664 0.038159 CAACCGACACAGAGAGGACC 60.038 60.000 0.00 0.00 0.00 4.46
2326 2667 0.389166 GAGCAACCGACACAGAGAGG 60.389 60.000 0.00 0.00 0.00 3.69
2327 2668 0.315251 TGAGCAACCGACACAGAGAG 59.685 55.000 0.00 0.00 0.00 3.20
2329 2670 1.800805 ATTGAGCAACCGACACAGAG 58.199 50.000 0.00 0.00 0.00 3.35
2330 2671 2.299013 AGTATTGAGCAACCGACACAGA 59.701 45.455 0.00 0.00 0.00 3.41
2351 2700 9.690913 AATGTGGTACTACTGTATTGACTAGTA 57.309 33.333 10.95 0.00 0.00 1.82
2352 2701 8.467598 CAATGTGGTACTACTGTATTGACTAGT 58.532 37.037 10.95 0.00 0.00 2.57
2354 2703 7.632028 GCCAATGTGGTACTACTGTATTGACTA 60.632 40.741 17.25 0.00 40.46 2.59
2356 2705 5.293569 GCCAATGTGGTACTACTGTATTGAC 59.706 44.000 17.25 6.87 40.46 3.18
2357 2706 5.424757 GCCAATGTGGTACTACTGTATTGA 58.575 41.667 17.25 0.00 40.46 2.57
2360 2709 4.037927 AGGCCAATGTGGTACTACTGTAT 58.962 43.478 5.01 0.00 40.46 2.29
2362 2711 2.266279 AGGCCAATGTGGTACTACTGT 58.734 47.619 5.01 0.00 40.46 3.55
2363 2712 3.270877 GAAGGCCAATGTGGTACTACTG 58.729 50.000 5.01 1.47 40.46 2.74
2364 2713 2.910319 TGAAGGCCAATGTGGTACTACT 59.090 45.455 5.01 0.00 40.46 2.57
2365 2714 3.343941 TGAAGGCCAATGTGGTACTAC 57.656 47.619 5.01 1.77 40.46 2.73
2366 2715 4.374689 TTTGAAGGCCAATGTGGTACTA 57.625 40.909 5.01 0.00 40.46 1.82
2367 2716 2.969821 TTGAAGGCCAATGTGGTACT 57.030 45.000 5.01 0.00 40.46 2.73
2368 2717 4.329462 TTTTTGAAGGCCAATGTGGTAC 57.671 40.909 5.01 0.00 40.46 3.34
2403 2755 6.319658 ACATATTTGCTTCTAGACCAATGTGG 59.680 38.462 0.00 0.00 45.02 4.17
2404 2756 7.066163 TGACATATTTGCTTCTAGACCAATGTG 59.934 37.037 11.72 9.45 0.00 3.21
2415 2767 2.684374 TGCGCATGACATATTTGCTTCT 59.316 40.909 5.66 0.00 34.23 2.85
2445 2797 2.780993 GCGACCCACGTCAAATTATTG 58.219 47.619 0.00 0.00 44.60 1.90
2446 2798 1.395608 CGCGACCCACGTCAAATTATT 59.604 47.619 0.00 0.00 44.60 1.40
2454 2806 1.418755 GAAAATCGCGACCCACGTC 59.581 57.895 12.93 0.00 44.60 4.34
2455 2807 2.030958 GGAAAATCGCGACCCACGT 61.031 57.895 12.93 0.00 44.60 4.49
2458 2810 0.878416 CAAAGGAAAATCGCGACCCA 59.122 50.000 12.93 0.00 0.00 4.51
2466 2818 3.253432 ACGAGGCTTGTCAAAGGAAAATC 59.747 43.478 0.18 0.00 33.68 2.17
2472 2824 3.305709 TGACGAGGCTTGTCAAAGG 57.694 52.632 30.66 0.00 42.99 3.11
2477 2829 1.203928 CGATCATGACGAGGCTTGTC 58.796 55.000 25.10 25.10 36.88 3.18
2478 2830 0.807667 GCGATCATGACGAGGCTTGT 60.808 55.000 7.22 7.22 0.00 3.16
2479 2831 1.493950 GGCGATCATGACGAGGCTTG 61.494 60.000 17.91 0.00 0.00 4.01
2480 2832 1.227380 GGCGATCATGACGAGGCTT 60.227 57.895 17.91 0.00 0.00 4.35
2481 2833 1.752358 ATGGCGATCATGACGAGGCT 61.752 55.000 17.91 0.00 34.22 4.58
2482 2834 0.882042 AATGGCGATCATGACGAGGC 60.882 55.000 17.91 14.86 35.99 4.70
2483 2835 1.586422 AAATGGCGATCATGACGAGG 58.414 50.000 17.91 1.75 35.99 4.63
2484 2836 3.546815 GGAAAAATGGCGATCATGACGAG 60.547 47.826 17.91 5.86 35.99 4.18
2485 2837 2.354510 GGAAAAATGGCGATCATGACGA 59.645 45.455 17.91 2.82 35.99 4.20
2486 2838 2.097304 TGGAAAAATGGCGATCATGACG 59.903 45.455 0.00 5.41 35.99 4.35
2487 2839 3.781079 TGGAAAAATGGCGATCATGAC 57.219 42.857 0.00 0.00 35.99 3.06
2488 2840 3.130869 CCTTGGAAAAATGGCGATCATGA 59.869 43.478 0.00 0.00 35.99 3.07
2489 2841 3.130869 TCCTTGGAAAAATGGCGATCATG 59.869 43.478 0.00 0.00 35.99 3.07
2490 2842 3.131046 GTCCTTGGAAAAATGGCGATCAT 59.869 43.478 0.00 0.00 37.79 2.45
2491 2843 2.491693 GTCCTTGGAAAAATGGCGATCA 59.508 45.455 0.00 0.00 0.00 2.92
2492 2844 2.477863 CGTCCTTGGAAAAATGGCGATC 60.478 50.000 0.00 0.00 0.00 3.69
2493 2845 1.472480 CGTCCTTGGAAAAATGGCGAT 59.528 47.619 0.00 0.00 0.00 4.58
2494 2846 0.878416 CGTCCTTGGAAAAATGGCGA 59.122 50.000 0.00 0.00 0.00 5.54
2495 2847 0.596082 ACGTCCTTGGAAAAATGGCG 59.404 50.000 0.00 0.00 0.00 5.69
2496 2848 1.934849 GCACGTCCTTGGAAAAATGGC 60.935 52.381 0.00 0.00 0.00 4.40
2497 2849 1.336795 GGCACGTCCTTGGAAAAATGG 60.337 52.381 0.00 0.00 0.00 3.16
2498 2850 1.613437 AGGCACGTCCTTGGAAAAATG 59.387 47.619 1.23 0.00 44.75 2.32
2499 2851 1.995376 AGGCACGTCCTTGGAAAAAT 58.005 45.000 1.23 0.00 44.75 1.82
2500 2852 3.505835 AGGCACGTCCTTGGAAAAA 57.494 47.368 1.23 0.00 44.75 1.94
2554 2912 0.108992 GCGACCCATGACGAACTACA 60.109 55.000 0.00 0.00 0.00 2.74
2555 2913 0.804933 GGCGACCCATGACGAACTAC 60.805 60.000 0.00 0.00 0.00 2.73
2556 2914 1.252215 TGGCGACCCATGACGAACTA 61.252 55.000 0.00 0.00 35.79 2.24
2737 3123 0.396417 TTGGGTTGGAGTGGTTGTGG 60.396 55.000 0.00 0.00 0.00 4.17
2738 3124 0.744281 GTTGGGTTGGAGTGGTTGTG 59.256 55.000 0.00 0.00 0.00 3.33
2739 3125 0.396556 GGTTGGGTTGGAGTGGTTGT 60.397 55.000 0.00 0.00 0.00 3.32
2742 3128 1.585651 TTGGGTTGGGTTGGAGTGGT 61.586 55.000 0.00 0.00 0.00 4.16
2743 3129 1.112916 GTTGGGTTGGGTTGGAGTGG 61.113 60.000 0.00 0.00 0.00 4.00
2744 3130 1.112916 GGTTGGGTTGGGTTGGAGTG 61.113 60.000 0.00 0.00 0.00 3.51
2745 3131 1.231928 GGTTGGGTTGGGTTGGAGT 59.768 57.895 0.00 0.00 0.00 3.85
2746 3132 1.533033 GGGTTGGGTTGGGTTGGAG 60.533 63.158 0.00 0.00 0.00 3.86
2748 3134 2.525629 GGGGTTGGGTTGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
2749 3135 2.525629 GGGGGTTGGGTTGGGTTG 60.526 66.667 0.00 0.00 0.00 3.77
2781 3394 1.789523 TGCAGGTAGGACCATAGGAC 58.210 55.000 0.00 0.00 41.95 3.85
2809 3452 0.329596 CAAGTGGAAAGGGAGGGAGG 59.670 60.000 0.00 0.00 0.00 4.30
2810 3453 1.068121 ACAAGTGGAAAGGGAGGGAG 58.932 55.000 0.00 0.00 0.00 4.30
2811 3454 1.423921 GAACAAGTGGAAAGGGAGGGA 59.576 52.381 0.00 0.00 0.00 4.20
2812 3455 1.144913 TGAACAAGTGGAAAGGGAGGG 59.855 52.381 0.00 0.00 0.00 4.30
2906 3562 4.217550 GGCTGAATGTTTTGCTAACCTACA 59.782 41.667 0.82 0.00 0.00 2.74
2944 3600 1.204704 TCCATGAAGCGTACTGGTGAG 59.795 52.381 0.00 0.00 0.00 3.51
2961 3617 4.935352 ACAGCAGTTTAGCAAAAATCCA 57.065 36.364 0.00 0.00 36.85 3.41
2993 3652 5.995446 AGCCTTATAAAAGTGAAGAGAGGG 58.005 41.667 0.00 0.00 0.00 4.30
2994 3653 8.207545 ACATAGCCTTATAAAAGTGAAGAGAGG 58.792 37.037 0.00 0.00 0.00 3.69
2996 3655 7.987458 CCACATAGCCTTATAAAAGTGAAGAGA 59.013 37.037 0.00 0.00 0.00 3.10
2997 3656 7.987458 TCCACATAGCCTTATAAAAGTGAAGAG 59.013 37.037 0.00 0.00 0.00 2.85
3000 3659 6.537301 CGTCCACATAGCCTTATAAAAGTGAA 59.463 38.462 0.00 0.00 0.00 3.18
3001 3660 6.046593 CGTCCACATAGCCTTATAAAAGTGA 58.953 40.000 0.00 0.00 0.00 3.41
3002 3661 5.815740 ACGTCCACATAGCCTTATAAAAGTG 59.184 40.000 0.00 0.00 0.00 3.16
3003 3662 5.985911 ACGTCCACATAGCCTTATAAAAGT 58.014 37.500 0.00 0.00 0.00 2.66
3004 3663 6.920569 AACGTCCACATAGCCTTATAAAAG 57.079 37.500 0.00 0.00 0.00 2.27
3005 3664 6.879993 TGAAACGTCCACATAGCCTTATAAAA 59.120 34.615 0.00 0.00 0.00 1.52
3006 3665 6.408035 TGAAACGTCCACATAGCCTTATAAA 58.592 36.000 0.00 0.00 0.00 1.40
3007 3666 5.979993 TGAAACGTCCACATAGCCTTATAA 58.020 37.500 0.00 0.00 0.00 0.98
3008 3667 5.361571 TCTGAAACGTCCACATAGCCTTATA 59.638 40.000 0.00 0.00 0.00 0.98
3009 3668 4.161565 TCTGAAACGTCCACATAGCCTTAT 59.838 41.667 0.00 0.00 0.00 1.73
3010 3669 3.512329 TCTGAAACGTCCACATAGCCTTA 59.488 43.478 0.00 0.00 0.00 2.69
3011 3670 2.301870 TCTGAAACGTCCACATAGCCTT 59.698 45.455 0.00 0.00 0.00 4.35
3012 3671 1.899814 TCTGAAACGTCCACATAGCCT 59.100 47.619 0.00 0.00 0.00 4.58
3013 3672 2.000447 GTCTGAAACGTCCACATAGCC 59.000 52.381 0.00 0.00 0.00 3.93
3014 3673 1.654105 CGTCTGAAACGTCCACATAGC 59.346 52.381 0.00 0.00 46.42 2.97
3025 3684 1.846175 GTTTTGCACAGCGTCTGAAAC 59.154 47.619 12.77 9.03 35.18 2.78
3026 3685 1.470494 TGTTTTGCACAGCGTCTGAAA 59.530 42.857 12.77 2.17 35.18 2.69
3027 3686 1.063912 CTGTTTTGCACAGCGTCTGAA 59.936 47.619 12.77 0.00 46.70 3.02
3028 3687 0.657312 CTGTTTTGCACAGCGTCTGA 59.343 50.000 12.77 0.00 46.70 3.27
3029 3688 3.153364 CTGTTTTGCACAGCGTCTG 57.847 52.632 5.47 5.47 46.70 3.51
3036 3695 4.081752 AGTGAAATTGTCCTGTTTTGCACA 60.082 37.500 0.00 0.00 0.00 4.57
3037 3696 4.432712 AGTGAAATTGTCCTGTTTTGCAC 58.567 39.130 0.00 0.00 0.00 4.57
3038 3697 4.734398 AGTGAAATTGTCCTGTTTTGCA 57.266 36.364 0.00 0.00 0.00 4.08
3039 3698 4.869861 ACAAGTGAAATTGTCCTGTTTTGC 59.130 37.500 0.00 0.00 39.13 3.68
3049 3708 5.354234 AGTCGTTTCAGACAAGTGAAATTGT 59.646 36.000 2.59 0.00 45.71 2.71
3050 3709 5.810525 AGTCGTTTCAGACAAGTGAAATTG 58.189 37.500 2.59 0.24 45.71 2.32
3051 3710 6.436843 AAGTCGTTTCAGACAAGTGAAATT 57.563 33.333 2.59 0.00 45.71 1.82
3052 3711 7.730364 ATAAGTCGTTTCAGACAAGTGAAAT 57.270 32.000 2.59 0.00 45.71 2.17
3053 3712 8.651391 TTATAAGTCGTTTCAGACAAGTGAAA 57.349 30.769 0.00 0.00 42.79 2.69
3054 3713 8.651391 TTTATAAGTCGTTTCAGACAAGTGAA 57.349 30.769 0.00 0.00 43.24 3.18
3055 3714 8.651391 TTTTATAAGTCGTTTCAGACAAGTGA 57.349 30.769 0.00 0.00 43.24 3.41
3056 3715 9.878599 ATTTTTATAAGTCGTTTCAGACAAGTG 57.121 29.630 0.00 0.00 43.24 3.16
3065 3724 9.481800 CCTCCGTTTATTTTTATAAGTCGTTTC 57.518 33.333 0.00 0.00 0.00 2.78
3066 3725 8.453320 CCCTCCGTTTATTTTTATAAGTCGTTT 58.547 33.333 0.00 0.00 0.00 3.60
3067 3726 7.823799 TCCCTCCGTTTATTTTTATAAGTCGTT 59.176 33.333 0.00 0.00 0.00 3.85
3068 3727 7.330262 TCCCTCCGTTTATTTTTATAAGTCGT 58.670 34.615 0.00 0.00 0.00 4.34
3069 3728 7.493645 ACTCCCTCCGTTTATTTTTATAAGTCG 59.506 37.037 0.00 0.00 0.00 4.18
3070 3729 8.728337 ACTCCCTCCGTTTATTTTTATAAGTC 57.272 34.615 0.00 0.00 0.00 3.01
3071 3730 9.605275 GTACTCCCTCCGTTTATTTTTATAAGT 57.395 33.333 0.00 0.00 0.00 2.24
3072 3731 9.049523 GGTACTCCCTCCGTTTATTTTTATAAG 57.950 37.037 0.00 0.00 0.00 1.73
3073 3732 8.547173 TGGTACTCCCTCCGTTTATTTTTATAA 58.453 33.333 0.00 0.00 0.00 0.98
3074 3733 8.088463 TGGTACTCCCTCCGTTTATTTTTATA 57.912 34.615 0.00 0.00 0.00 0.98
3075 3734 6.961042 TGGTACTCCCTCCGTTTATTTTTAT 58.039 36.000 0.00 0.00 0.00 1.40
3076 3735 6.371595 TGGTACTCCCTCCGTTTATTTTTA 57.628 37.500 0.00 0.00 0.00 1.52
3077 3736 5.245584 TGGTACTCCCTCCGTTTATTTTT 57.754 39.130 0.00 0.00 0.00 1.94
3078 3737 4.840271 CTGGTACTCCCTCCGTTTATTTT 58.160 43.478 0.00 0.00 0.00 1.82
3079 3738 3.370209 GCTGGTACTCCCTCCGTTTATTT 60.370 47.826 0.00 0.00 0.00 1.40
3080 3739 2.169978 GCTGGTACTCCCTCCGTTTATT 59.830 50.000 0.00 0.00 0.00 1.40
3081 3740 1.761198 GCTGGTACTCCCTCCGTTTAT 59.239 52.381 0.00 0.00 0.00 1.40
3082 3741 1.188863 GCTGGTACTCCCTCCGTTTA 58.811 55.000 0.00 0.00 0.00 2.01
3083 3742 1.885163 CGCTGGTACTCCCTCCGTTT 61.885 60.000 0.00 0.00 0.00 3.60
3084 3743 2.348888 CGCTGGTACTCCCTCCGTT 61.349 63.158 0.00 0.00 0.00 4.44
3085 3744 2.754658 CGCTGGTACTCCCTCCGT 60.755 66.667 0.00 0.00 0.00 4.69
3086 3745 2.348888 AACGCTGGTACTCCCTCCG 61.349 63.158 0.00 0.00 34.80 4.63
3087 3746 1.218316 CAACGCTGGTACTCCCTCC 59.782 63.158 0.00 0.00 0.00 4.30
3088 3747 1.218316 CCAACGCTGGTACTCCCTC 59.782 63.158 0.00 0.00 38.00 4.30
3089 3748 2.291043 CCCAACGCTGGTACTCCCT 61.291 63.158 3.77 0.00 41.72 4.20
3090 3749 2.267961 CCCAACGCTGGTACTCCC 59.732 66.667 3.77 0.00 41.72 4.30
3091 3750 2.436115 GCCCAACGCTGGTACTCC 60.436 66.667 3.77 0.00 41.72 3.85
3092 3751 2.813908 CGCCCAACGCTGGTACTC 60.814 66.667 3.77 0.00 41.72 2.59
3102 3761 1.062002 CACGTCATTATCACGCCCAAC 59.938 52.381 0.00 0.00 41.10 3.77
3103 3762 1.338294 ACACGTCATTATCACGCCCAA 60.338 47.619 0.00 0.00 41.10 4.12
3104 3763 0.248012 ACACGTCATTATCACGCCCA 59.752 50.000 0.00 0.00 41.10 5.36
3105 3764 0.928229 GACACGTCATTATCACGCCC 59.072 55.000 0.00 0.00 41.10 6.13
3145 3804 7.510549 TCTTTCCTTGTTTCCTGATAAACAG 57.489 36.000 0.00 0.00 46.77 3.16
3146 3805 7.176690 GGATCTTTCCTTGTTTCCTGATAAACA 59.823 37.037 0.00 0.00 41.25 2.83
3147 3806 7.176690 TGGATCTTTCCTTGTTTCCTGATAAAC 59.823 37.037 0.00 0.00 43.07 2.01
3148 3807 7.237982 TGGATCTTTCCTTGTTTCCTGATAAA 58.762 34.615 0.00 0.00 43.07 1.40
3351 4029 4.101077 AGGGAGGGAGAGGCCTGG 62.101 72.222 12.00 0.00 36.66 4.45
3371 4049 4.293648 CCGGCCGACAGTGTGTGA 62.294 66.667 30.73 0.00 0.00 3.58
3438 4116 3.411446 TGCAAGCTGTAACATGCTTACT 58.589 40.909 7.30 0.00 46.29 2.24
3439 4117 3.829886 TGCAAGCTGTAACATGCTTAC 57.170 42.857 7.30 2.09 46.29 2.34
3440 4118 3.366273 GCTTGCAAGCTGTAACATGCTTA 60.366 43.478 37.97 0.00 46.29 3.09
3475 4153 2.073816 GTCGTGTCCCTTGTATGGTTG 58.926 52.381 0.00 0.00 0.00 3.77
3559 4247 2.289320 CCGTGATTCCCAGATCTCATCC 60.289 54.545 0.00 0.00 0.00 3.51
3563 4251 1.269309 CGTCCGTGATTCCCAGATCTC 60.269 57.143 0.00 0.00 0.00 2.75
3594 4306 3.937706 AGGCATCTCTGAATCGTTGAAAG 59.062 43.478 0.00 0.00 0.00 2.62
3601 4313 1.260033 GCGAAAGGCATCTCTGAATCG 59.740 52.381 0.00 0.00 42.87 3.34
3625 4337 7.761249 GCCTGTTTTTCTTATGCAGATTTATGT 59.239 33.333 0.00 0.00 0.00 2.29
3628 4349 7.466746 AGCCTGTTTTTCTTATGCAGATTTA 57.533 32.000 0.00 0.00 0.00 1.40
3760 4481 2.756760 TCTCGGTGGGTATAGTTGTGAC 59.243 50.000 0.00 0.00 0.00 3.67
3777 4498 1.592223 GTGTTCCTCCCCACTCTCG 59.408 63.158 0.00 0.00 0.00 4.04
3781 4502 2.526873 AGCGTGTTCCTCCCCACT 60.527 61.111 0.00 0.00 0.00 4.00
3783 4504 2.525629 TGAGCGTGTTCCTCCCCA 60.526 61.111 0.00 0.00 0.00 4.96
3784 4505 2.047179 GTGAGCGTGTTCCTCCCC 60.047 66.667 0.00 0.00 0.00 4.81
3785 4506 1.021390 CATGTGAGCGTGTTCCTCCC 61.021 60.000 0.00 0.00 0.00 4.30
3786 4507 1.639298 GCATGTGAGCGTGTTCCTCC 61.639 60.000 0.00 0.00 34.24 4.30
3834 4556 6.071840 AGGGTCTACATATCTTACGCTTCATC 60.072 42.308 0.00 0.00 30.12 2.92
3835 4557 5.775701 AGGGTCTACATATCTTACGCTTCAT 59.224 40.000 0.00 0.00 30.12 2.57
3836 4558 5.138276 AGGGTCTACATATCTTACGCTTCA 58.862 41.667 0.00 0.00 30.12 3.02
3837 4559 5.708877 AGGGTCTACATATCTTACGCTTC 57.291 43.478 0.00 0.00 30.12 3.86
3838 4560 5.363005 ACAAGGGTCTACATATCTTACGCTT 59.637 40.000 0.00 0.00 42.06 4.68
3938 4675 2.436646 ATCTGCCGCCCTTTCGTG 60.437 61.111 0.00 0.00 0.00 4.35
3939 4676 2.125106 GATCTGCCGCCCTTTCGT 60.125 61.111 0.00 0.00 0.00 3.85
3974 4722 4.638421 GTGATTTGTTTATCCATCGGACCA 59.362 41.667 0.00 0.00 32.98 4.02
4047 4796 7.553044 CCTATCCTGATACGTACATCTGTCATA 59.447 40.741 0.00 0.00 0.00 2.15
4114 4863 6.320164 TGCCTGCTCTTGTTAGAACTTAAAAA 59.680 34.615 0.00 0.00 0.00 1.94
4199 4948 2.561419 ACTCAGTGGTTCTAGCGCTAAA 59.439 45.455 19.37 12.52 34.32 1.85
4204 4953 0.173708 GGGACTCAGTGGTTCTAGCG 59.826 60.000 0.00 0.00 0.00 4.26
4222 4971 2.504367 CACCAACAACCCAACTCTAGG 58.496 52.381 0.00 0.00 0.00 3.02
4381 5144 1.156736 CCAGACCGGTGTTGATCAAC 58.843 55.000 28.10 28.10 41.50 3.18
4446 5209 3.207265 TGTCATGGGAAATATGGTCCG 57.793 47.619 0.00 0.00 35.86 4.79
4531 5300 4.142447 CCAGCAATCATCTGAAACAAGAGG 60.142 45.833 0.00 0.00 33.54 3.69
4622 5395 4.614555 TTCCGCAGTTGCAATATTACTG 57.385 40.909 0.59 6.78 42.21 2.74
4623 5396 5.835113 AATTCCGCAGTTGCAATATTACT 57.165 34.783 0.59 0.00 42.21 2.24
4624 5397 7.138736 ACATAATTCCGCAGTTGCAATATTAC 58.861 34.615 0.59 0.00 42.21 1.89
4625 5398 7.270757 ACATAATTCCGCAGTTGCAATATTA 57.729 32.000 0.59 4.98 42.21 0.98
4626 5399 6.147864 ACATAATTCCGCAGTTGCAATATT 57.852 33.333 0.59 3.07 42.21 1.28
4661 5439 6.317789 TGTCTCTTGCACTTAATTTCTTGG 57.682 37.500 0.00 0.00 0.00 3.61
4884 5664 1.077212 AAGCGCCTTGATGCCAGAT 60.077 52.632 2.29 0.00 0.00 2.90
4932 5712 3.316588 CAGCATCACTGTAGATACCGAGT 59.683 47.826 0.00 0.00 41.86 4.18
5008 8023 4.078639 AGTGAAGAGTTTAGTTGCTGCT 57.921 40.909 0.00 0.00 0.00 4.24
5083 8099 2.645510 CGACACGCGGTGACAGTTC 61.646 63.158 12.47 0.00 36.96 3.01
5174 8195 9.170890 ACAGAATATAGATTCCATACCCAAGAA 57.829 33.333 6.47 0.00 42.25 2.52
5204 8225 4.008074 ACAAGGGGTATATGCGATTCAG 57.992 45.455 0.00 0.00 0.00 3.02
5211 8232 9.749340 AGGTAAATAATTACAAGGGGTATATGC 57.251 33.333 3.21 0.00 42.66 3.14
5224 8245 5.007332 CACCAGCCGTCAGGTAAATAATTAC 59.993 44.000 0.00 0.00 40.60 1.89
5290 8321 3.775316 AGATAATCAACTCCCTGGAACGT 59.225 43.478 0.00 0.00 0.00 3.99
5350 8390 3.396260 TTGTTCTCCCTACCTTTCGTG 57.604 47.619 0.00 0.00 0.00 4.35
5383 8423 1.542472 CTCAATGCACTTGTCATGCCA 59.458 47.619 0.00 0.00 42.69 4.92
5402 8446 6.398918 ACTTTGCGATCTAACACATAAGACT 58.601 36.000 0.00 0.00 0.00 3.24
5438 8483 6.484364 TCATCCTAGTGTATCTGCATCAAA 57.516 37.500 0.00 0.00 0.00 2.69
5762 8814 2.609459 GGGATGTCATGCTGAAGTAACG 59.391 50.000 4.18 0.00 0.00 3.18
5952 9031 1.904287 TCCCACCATTTCCAACTTCG 58.096 50.000 0.00 0.00 0.00 3.79
6030 9112 2.356135 ACTAAATGCACATGGGACGTC 58.644 47.619 7.13 7.13 0.00 4.34
6032 9114 4.847633 CATTACTAAATGCACATGGGACG 58.152 43.478 0.00 0.00 36.35 4.79
6049 9131 9.677567 TCTTTTTGAGAATTGTAACAGCATTAC 57.322 29.630 4.38 4.38 0.00 1.89
6060 9166 8.897872 ATGCAGAATTTCTTTTTGAGAATTGT 57.102 26.923 0.00 0.00 43.65 2.71
6231 9337 6.003326 TGAAGAAGGTGTATCATGAGCAAAA 58.997 36.000 0.09 0.00 0.00 2.44
6237 9343 6.558394 TCCCATATGAAGAAGGTGTATCATGA 59.442 38.462 3.65 0.00 34.54 3.07
6287 9393 3.613671 CGCCTAGGCTATCTGTTCAGATG 60.614 52.174 30.55 6.66 39.32 2.90
6288 9394 2.560542 CGCCTAGGCTATCTGTTCAGAT 59.439 50.000 30.55 17.55 39.32 2.90
6557 9666 1.717032 AGCTTACCGCCCATAGATCA 58.283 50.000 0.00 0.00 40.39 2.92
6653 9762 1.556591 CGAGTGCTGCGCAACAAGTA 61.557 55.000 16.20 0.00 41.47 2.24
6654 9763 2.885676 CGAGTGCTGCGCAACAAGT 61.886 57.895 16.20 5.80 41.47 3.16
6779 9889 1.771255 CCCTTCCCCCTGAACTAGATG 59.229 57.143 0.00 0.00 0.00 2.90
6843 9957 4.236935 GTCATACAACCAAAGCCACATTG 58.763 43.478 0.00 0.00 0.00 2.82
6848 9962 2.969821 AGGTCATACAACCAAAGCCA 57.030 45.000 0.00 0.00 42.12 4.75
6859 9973 6.293135 GCTGCAGCTTATTTCTAAGGTCATAC 60.293 42.308 31.33 0.00 42.35 2.39
6924 10038 6.306837 CGTTACAACTTGCAAACTTCAGAAAA 59.693 34.615 0.00 0.00 0.00 2.29
6991 10105 0.700564 AGAGAGAAGCCCCAATGCAA 59.299 50.000 0.00 0.00 0.00 4.08
6993 10107 0.254178 TCAGAGAGAAGCCCCAATGC 59.746 55.000 0.00 0.00 0.00 3.56
7002 10117 7.536855 CCCAAGAATTTCATTTCAGAGAGAAG 58.463 38.462 0.00 0.00 37.57 2.85
7115 10230 5.951747 ACATTTGCCACCTGTATTATGAACT 59.048 36.000 0.00 0.00 0.00 3.01
7127 10242 5.418840 CCAGTTTATCTTACATTTGCCACCT 59.581 40.000 0.00 0.00 0.00 4.00
7154 10269 3.668447 CAGCTTTGATCTACACACCTGT 58.332 45.455 0.00 0.00 0.00 4.00
7236 10351 1.812571 GACTTGCCATTCGAACCACAT 59.187 47.619 0.00 0.00 0.00 3.21
7265 10380 2.201210 CCAAACCCACCCAAGGCT 59.799 61.111 0.00 0.00 0.00 4.58
7318 10433 0.108585 ATGACCTTGGTTGTCGCAGT 59.891 50.000 0.00 0.00 35.46 4.40
7354 10469 0.552848 GATTCCCAGAAGGATGCCCA 59.447 55.000 0.00 0.00 46.94 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.