Multiple sequence alignment - TraesCS1A01G164700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G164700 chr1A 100.000 5633 0 0 1 5633 297701706 297696074 0.000000e+00 10403.0
1 TraesCS1A01G164700 chr1A 90.323 155 15 0 3322 3476 155857860 155857706 2.660000e-48 204.0
2 TraesCS1A01G164700 chr1A 100.000 63 0 0 5436 5498 297696210 297696148 3.570000e-22 117.0
3 TraesCS1A01G164700 chr1A 100.000 63 0 0 5497 5559 297696271 297696209 3.570000e-22 117.0
4 TraesCS1A01G164700 chr1A 88.372 86 8 2 5181 5265 24572430 24572514 9.980000e-18 102.0
5 TraesCS1A01G164700 chr1B 93.871 3671 136 31 116 3739 328647042 328643414 0.000000e+00 5450.0
6 TraesCS1A01G164700 chr1B 91.344 1756 75 35 3723 5454 328643401 328641699 0.000000e+00 2329.0
7 TraesCS1A01G164700 chr1B 84.994 893 118 9 2140 3021 4789377 4788490 0.000000e+00 893.0
8 TraesCS1A01G164700 chr1B 94.340 53 1 1 5262 5312 328641962 328641910 4.680000e-11 80.5
9 TraesCS1A01G164700 chr1D 96.288 1266 37 5 703 1966 229324737 229323480 0.000000e+00 2069.0
10 TraesCS1A01G164700 chr1D 95.853 1061 41 2 4007 5067 229322396 229321339 0.000000e+00 1712.0
11 TraesCS1A01G164700 chr1D 84.189 974 146 7 2165 3135 120019686 120020654 0.000000e+00 939.0
12 TraesCS1A01G164700 chr1D 85.584 874 119 6 2165 3034 484433184 484432314 0.000000e+00 909.0
13 TraesCS1A01G164700 chr1D 82.432 962 159 7 2165 3124 196027833 196028786 0.000000e+00 832.0
14 TraesCS1A01G164700 chr1D 88.068 528 45 9 3480 4007 229323027 229322518 1.340000e-170 610.0
15 TraesCS1A01G164700 chr1D 85.648 216 11 4 5257 5454 229320887 229320674 5.720000e-50 209.0
16 TraesCS1A01G164700 chr1D 92.373 118 9 0 5516 5633 229320702 229320585 9.710000e-38 169.0
17 TraesCS1A01G164700 chr1D 92.453 53 2 1 5262 5312 229320937 229320885 2.180000e-09 75.0
18 TraesCS1A01G164700 chr3A 84.270 979 143 8 2165 3138 556356375 556357347 0.000000e+00 944.0
19 TraesCS1A01G164700 chr3A 90.446 157 14 1 3321 3477 509865251 509865406 7.400000e-49 206.0
20 TraesCS1A01G164700 chr3A 85.333 75 10 1 5181 5255 40849641 40849568 6.050000e-10 76.8
21 TraesCS1A01G164700 chr7B 85.598 861 117 5 2165 3021 580662476 580663333 0.000000e+00 896.0
22 TraesCS1A01G164700 chr7B 92.308 78 6 0 5181 5258 153744649 153744726 1.660000e-20 111.0
23 TraesCS1A01G164700 chr2D 85.242 847 121 3 2172 3016 493074486 493073642 0.000000e+00 869.0
24 TraesCS1A01G164700 chr6D 82.884 964 148 12 2165 3119 417771460 417772415 0.000000e+00 850.0
25 TraesCS1A01G164700 chr3B 81.481 702 116 12 2433 3127 672714036 672713342 1.060000e-156 564.0
26 TraesCS1A01G164700 chr3B 84.247 146 19 3 2984 3127 561571520 561571377 7.610000e-29 139.0
27 TraesCS1A01G164700 chr3B 86.047 86 12 0 5180 5265 790348292 790348377 6.010000e-15 93.5
28 TraesCS1A01G164700 chr7A 81.197 702 121 8 2433 3127 648373400 648374097 6.380000e-154 555.0
29 TraesCS1A01G164700 chr5A 81.215 708 112 10 2433 3137 7169629 7168940 8.250000e-153 551.0
30 TraesCS1A01G164700 chr4B 92.208 154 11 1 3323 3476 106227561 106227409 3.420000e-52 217.0
31 TraesCS1A01G164700 chr7D 91.558 154 13 0 3323 3476 454079230 454079077 4.420000e-51 213.0
32 TraesCS1A01G164700 chr2A 90.968 155 13 1 3323 3477 141506318 141506471 2.060000e-49 207.0
33 TraesCS1A01G164700 chr3D 90.968 155 11 3 3324 3476 315480578 315480425 7.400000e-49 206.0
34 TraesCS1A01G164700 chr4D 90.385 156 13 2 3322 3476 119822901 119822747 2.660000e-48 204.0
35 TraesCS1A01G164700 chr2B 89.937 159 14 2 3320 3477 190022887 190023044 2.660000e-48 204.0
36 TraesCS1A01G164700 chr2B 86.517 89 8 3 5184 5268 781783496 781783584 1.670000e-15 95.3
37 TraesCS1A01G164700 chr2B 88.608 79 8 1 5181 5258 781783579 781783501 1.670000e-15 95.3
38 TraesCS1A01G164700 chr6B 93.590 78 5 0 5181 5258 719861553 719861630 3.570000e-22 117.0
39 TraesCS1A01G164700 chr4A 89.744 78 8 0 5181 5258 669583271 669583194 3.590000e-17 100.0
40 TraesCS1A01G164700 chr4A 90.323 62 3 3 5181 5241 20263342 20263283 1.680000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G164700 chr1A 297696074 297701706 5632 True 10403.000000 10403 100.0000 1 5633 1 chr1A.!!$R2 5632
1 TraesCS1A01G164700 chr1B 328641699 328647042 5343 True 2619.833333 5450 93.1850 116 5454 3 chr1B.!!$R2 5338
2 TraesCS1A01G164700 chr1B 4788490 4789377 887 True 893.000000 893 84.9940 2140 3021 1 chr1B.!!$R1 881
3 TraesCS1A01G164700 chr1D 120019686 120020654 968 False 939.000000 939 84.1890 2165 3135 1 chr1D.!!$F1 970
4 TraesCS1A01G164700 chr1D 484432314 484433184 870 True 909.000000 909 85.5840 2165 3034 1 chr1D.!!$R1 869
5 TraesCS1A01G164700 chr1D 196027833 196028786 953 False 832.000000 832 82.4320 2165 3124 1 chr1D.!!$F2 959
6 TraesCS1A01G164700 chr1D 229320585 229324737 4152 True 807.333333 2069 91.7805 703 5633 6 chr1D.!!$R2 4930
7 TraesCS1A01G164700 chr3A 556356375 556357347 972 False 944.000000 944 84.2700 2165 3138 1 chr3A.!!$F2 973
8 TraesCS1A01G164700 chr7B 580662476 580663333 857 False 896.000000 896 85.5980 2165 3021 1 chr7B.!!$F2 856
9 TraesCS1A01G164700 chr2D 493073642 493074486 844 True 869.000000 869 85.2420 2172 3016 1 chr2D.!!$R1 844
10 TraesCS1A01G164700 chr6D 417771460 417772415 955 False 850.000000 850 82.8840 2165 3119 1 chr6D.!!$F1 954
11 TraesCS1A01G164700 chr3B 672713342 672714036 694 True 564.000000 564 81.4810 2433 3127 1 chr3B.!!$R2 694
12 TraesCS1A01G164700 chr7A 648373400 648374097 697 False 555.000000 555 81.1970 2433 3127 1 chr7A.!!$F1 694
13 TraesCS1A01G164700 chr5A 7168940 7169629 689 True 551.000000 551 81.2150 2433 3137 1 chr5A.!!$R1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.591170 CGGACCTCACGCACAAAATT 59.409 50.000 0.00 0.0 0.00 1.82 F
637 641 0.615331 ACAGAGATTGTGGGCGATGT 59.385 50.000 0.00 0.0 38.99 3.06 F
1724 1730 0.179156 GCTTGCCATCGTGGTTGATG 60.179 55.000 6.02 0.0 44.29 3.07 F
2284 2454 1.299850 GTGTTTTTGCTCCCCGTGC 60.300 57.895 0.00 0.0 0.00 5.34 F
2670 2847 0.460987 GGCCTGACTTGACATCTCCG 60.461 60.000 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1721 0.037326 TCGTCAGCTCCATCAACCAC 60.037 55.000 0.0 0.0 0.0 4.16 R
2431 2602 0.107508 CGGACTGGCAAGGATGATGT 60.108 55.000 0.0 0.0 0.0 3.06 R
2654 2831 0.803768 CGGCGGAGATGTCAAGTCAG 60.804 60.000 0.0 0.0 0.0 3.51 R
4278 4619 1.615392 GCATTGAACTGGTTGGAAGCT 59.385 47.619 0.0 0.0 0.0 3.74 R
4667 5008 0.670546 CAGTGAAGTGCAGTACCCGG 60.671 60.000 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.295253 AAATTAGAGCGGACCTCACG 57.705 50.000 0.00 0.00 43.31 4.35
27 28 3.725819 CGGACCTCACGCACAAAA 58.274 55.556 0.00 0.00 0.00 2.44
28 29 2.244000 CGGACCTCACGCACAAAAT 58.756 52.632 0.00 0.00 0.00 1.82
29 30 0.591170 CGGACCTCACGCACAAAATT 59.409 50.000 0.00 0.00 0.00 1.82
30 31 1.001815 CGGACCTCACGCACAAAATTT 60.002 47.619 0.00 0.00 0.00 1.82
31 32 2.542824 CGGACCTCACGCACAAAATTTT 60.543 45.455 0.00 0.00 0.00 1.82
32 33 3.453424 GGACCTCACGCACAAAATTTTT 58.547 40.909 0.00 0.00 0.00 1.94
81 82 6.693315 TTTGTGACTTCTTTTCTAACCAGG 57.307 37.500 0.00 0.00 0.00 4.45
82 83 5.367945 TGTGACTTCTTTTCTAACCAGGT 57.632 39.130 0.00 0.00 0.00 4.00
83 84 5.123227 TGTGACTTCTTTTCTAACCAGGTG 58.877 41.667 0.00 0.00 0.00 4.00
84 85 4.023963 GTGACTTCTTTTCTAACCAGGTGC 60.024 45.833 0.00 0.00 0.00 5.01
85 86 4.134563 GACTTCTTTTCTAACCAGGTGCA 58.865 43.478 0.00 0.00 0.00 4.57
86 87 4.137543 ACTTCTTTTCTAACCAGGTGCAG 58.862 43.478 0.00 0.00 0.00 4.41
87 88 4.141482 ACTTCTTTTCTAACCAGGTGCAGA 60.141 41.667 0.00 0.00 0.00 4.26
88 89 4.640771 TCTTTTCTAACCAGGTGCAGAT 57.359 40.909 0.00 0.00 0.00 2.90
89 90 5.755409 TCTTTTCTAACCAGGTGCAGATA 57.245 39.130 0.00 0.00 0.00 1.98
90 91 6.121776 TCTTTTCTAACCAGGTGCAGATAA 57.878 37.500 0.00 0.32 0.00 1.75
91 92 6.539173 TCTTTTCTAACCAGGTGCAGATAAA 58.461 36.000 0.00 3.10 0.00 1.40
92 93 6.430000 TCTTTTCTAACCAGGTGCAGATAAAC 59.570 38.462 0.00 0.00 0.00 2.01
93 94 4.901197 TCTAACCAGGTGCAGATAAACA 57.099 40.909 0.00 0.00 0.00 2.83
94 95 4.575885 TCTAACCAGGTGCAGATAAACAC 58.424 43.478 0.00 0.00 36.03 3.32
95 96 3.508845 AACCAGGTGCAGATAAACACT 57.491 42.857 0.00 0.00 36.99 3.55
96 97 4.634012 AACCAGGTGCAGATAAACACTA 57.366 40.909 0.00 0.00 36.99 2.74
97 98 3.939066 ACCAGGTGCAGATAAACACTAC 58.061 45.455 0.00 0.00 36.99 2.73
98 99 3.326588 ACCAGGTGCAGATAAACACTACA 59.673 43.478 0.00 0.00 36.99 2.74
99 100 3.684788 CCAGGTGCAGATAAACACTACAC 59.315 47.826 0.00 0.00 36.99 2.90
100 101 4.563580 CCAGGTGCAGATAAACACTACACT 60.564 45.833 0.00 0.00 36.99 3.55
101 102 4.627467 CAGGTGCAGATAAACACTACACTC 59.373 45.833 0.00 0.00 36.99 3.51
102 103 3.612860 GGTGCAGATAAACACTACACTCG 59.387 47.826 0.00 0.00 36.99 4.18
103 104 4.235360 GTGCAGATAAACACTACACTCGT 58.765 43.478 0.00 0.00 33.92 4.18
104 105 4.684703 GTGCAGATAAACACTACACTCGTT 59.315 41.667 0.00 0.00 33.92 3.85
105 106 5.176958 GTGCAGATAAACACTACACTCGTTT 59.823 40.000 0.00 0.00 36.79 3.60
106 107 5.176774 TGCAGATAAACACTACACTCGTTTG 59.823 40.000 0.00 0.00 34.78 2.93
107 108 5.389516 GCAGATAAACACTACACTCGTTTGG 60.390 44.000 0.00 0.00 34.78 3.28
108 109 5.924254 CAGATAAACACTACACTCGTTTGGA 59.076 40.000 0.00 0.00 34.78 3.53
128 129 6.569127 TGGAGTTATTTAAGACTGGGCATA 57.431 37.500 0.00 0.00 0.00 3.14
129 130 6.591935 TGGAGTTATTTAAGACTGGGCATAG 58.408 40.000 0.00 0.00 0.00 2.23
133 134 8.507524 AGTTATTTAAGACTGGGCATAGAAAC 57.492 34.615 0.00 0.00 0.00 2.78
134 135 8.107095 AGTTATTTAAGACTGGGCATAGAAACA 58.893 33.333 0.00 0.00 0.00 2.83
159 160 5.470845 ACACTCGTTTCTCACTTCTTTTG 57.529 39.130 0.00 0.00 0.00 2.44
164 165 3.363178 GTTTCTCACTTCTTTTGTGGCG 58.637 45.455 0.00 0.00 36.21 5.69
167 168 3.067106 TCTCACTTCTTTTGTGGCGATC 58.933 45.455 0.00 0.00 36.21 3.69
173 174 3.896648 TCTTTTGTGGCGATCTTGTTC 57.103 42.857 0.00 0.00 0.00 3.18
178 179 4.647424 TTGTGGCGATCTTGTTCTTTTT 57.353 36.364 0.00 0.00 0.00 1.94
192 193 8.303876 TCTTGTTCTTTTTATATGGGAACTTGC 58.696 33.333 0.00 0.00 37.66 4.01
229 230 5.186992 TCATCTAGACCAATTCCGAGTTCAA 59.813 40.000 0.00 0.00 0.00 2.69
235 236 7.703058 AGACCAATTCCGAGTTCAATAATTT 57.297 32.000 0.00 0.00 0.00 1.82
236 237 7.538575 AGACCAATTCCGAGTTCAATAATTTG 58.461 34.615 0.00 0.00 0.00 2.32
341 342 4.954933 GCAGATCGCCTAACCCAA 57.045 55.556 0.00 0.00 32.94 4.12
410 414 1.596477 GAGATCGAGGCCCATGCAC 60.596 63.158 0.00 0.00 40.13 4.57
468 472 2.956964 CGTAGCTAGCTGCACGGC 60.957 66.667 28.85 11.13 45.94 5.68
490 494 3.202097 TCTTCGACACACAAGCATTTCA 58.798 40.909 0.00 0.00 0.00 2.69
571 575 7.775561 TCACATTAGAGCTAGAAGTCATCTGTA 59.224 37.037 0.00 0.00 39.30 2.74
591 595 8.632906 TCTGTATTTTAATTTTGGGTCCGTTA 57.367 30.769 0.00 0.00 0.00 3.18
637 641 0.615331 ACAGAGATTGTGGGCGATGT 59.385 50.000 0.00 0.00 38.99 3.06
670 674 7.455641 AGGGAGATCGTGTATTAGTATCTTG 57.544 40.000 0.00 0.00 0.00 3.02
672 676 7.040340 AGGGAGATCGTGTATTAGTATCTTGTG 60.040 40.741 0.00 0.00 0.00 3.33
877 883 4.103103 CTGAGCTCGACACGCCGA 62.103 66.667 9.64 0.00 37.03 5.54
1431 1437 4.753877 CTCGTCGTCGCCTTCGCA 62.754 66.667 0.00 0.00 36.96 5.10
1525 1531 1.033746 CGCATGCTTCCAGGTGGATT 61.034 55.000 17.13 0.00 44.98 3.01
1533 1539 4.068599 GCTTCCAGGTGGATTTAGATAGC 58.931 47.826 0.00 0.22 44.98 2.97
1619 1625 1.959282 CTTTTGCAGGGCTTTCTCACT 59.041 47.619 0.00 0.00 0.00 3.41
1684 1690 3.383620 AACTCTCTGTGCTGTTCTCTG 57.616 47.619 0.00 0.00 0.00 3.35
1685 1691 1.617850 ACTCTCTGTGCTGTTCTCTGG 59.382 52.381 0.00 0.00 0.00 3.86
1692 1698 1.293498 GCTGTTCTCTGGCTCCGAA 59.707 57.895 0.00 0.00 0.00 4.30
1714 1720 1.465777 GCAAACAATTGGCTTGCCATC 59.534 47.619 25.65 8.37 39.62 3.51
1715 1721 1.727880 CAAACAATTGGCTTGCCATCG 59.272 47.619 15.58 9.18 38.50 3.84
1720 1726 0.899717 ATTGGCTTGCCATCGTGGTT 60.900 50.000 15.58 0.00 40.46 3.67
1721 1727 1.804396 TTGGCTTGCCATCGTGGTTG 61.804 55.000 15.58 0.00 40.46 3.77
1724 1730 0.179156 GCTTGCCATCGTGGTTGATG 60.179 55.000 6.02 0.00 44.29 3.07
2112 2266 2.413112 CGCAACAGTTTCGATGACTCAT 59.587 45.455 0.00 0.00 0.00 2.90
2113 2267 3.612423 CGCAACAGTTTCGATGACTCATA 59.388 43.478 0.00 0.00 0.00 2.15
2114 2268 4.490959 CGCAACAGTTTCGATGACTCATAC 60.491 45.833 0.00 0.00 0.00 2.39
2122 2276 7.545965 CAGTTTCGATGACTCATACTTAGGTTT 59.454 37.037 0.00 0.00 0.00 3.27
2128 2282 8.765219 CGATGACTCATACTTAGGTTTAAATGG 58.235 37.037 0.00 0.00 0.00 3.16
2130 2284 8.786826 TGACTCATACTTAGGTTTAAATGGTG 57.213 34.615 0.00 0.00 0.00 4.17
2252 2421 2.290641 GCCACCACTCACACTTACAAAG 59.709 50.000 0.00 0.00 0.00 2.77
2271 2441 5.763204 ACAAAGTCGATAATGTGGAGTGTTT 59.237 36.000 0.00 0.00 0.00 2.83
2281 2451 1.956802 GGAGTGTTTTTGCTCCCCG 59.043 57.895 0.00 0.00 44.06 5.73
2284 2454 1.299850 GTGTTTTTGCTCCCCGTGC 60.300 57.895 0.00 0.00 0.00 5.34
2425 2596 1.555075 TCGACCCATCTTCAGGAAAGG 59.445 52.381 0.00 0.00 35.54 3.11
2431 2602 2.511218 CCATCTTCAGGAAAGGGATCCA 59.489 50.000 15.23 0.00 42.27 3.41
2631 2807 4.701663 CCGAACAGGCATGACACT 57.298 55.556 4.84 0.00 0.00 3.55
2670 2847 0.460987 GGCCTGACTTGACATCTCCG 60.461 60.000 0.00 0.00 0.00 4.63
2810 2990 5.492524 TGGAAGACCAGATCCTAGGATTTTT 59.507 40.000 25.25 10.79 41.77 1.94
2853 3033 6.864685 GGGTCGACAATAATTACACGATGATA 59.135 38.462 18.91 0.00 32.78 2.15
2929 3109 2.348888 ACCGGCAACTAGGTCTCCG 61.349 63.158 0.00 10.30 35.50 4.63
3045 3227 1.332195 CACCGGCCAGATCAGATCTA 58.668 55.000 12.88 0.00 37.58 1.98
3091 3273 3.047877 GACCCTCCACGCCGTTTG 61.048 66.667 0.00 0.00 0.00 2.93
3247 3437 3.180449 TGGGACACTGGGACTGAAT 57.820 52.632 0.00 0.00 0.00 2.57
3249 3439 2.187958 TGGGACACTGGGACTGAATAG 58.812 52.381 0.00 0.00 0.00 1.73
3260 3450 6.071672 ACTGGGACTGAATAGATGACATATCG 60.072 42.308 0.00 0.00 0.00 2.92
3297 3487 6.717997 GGTGAGAAGTTCCTTTATGGGTAAAA 59.282 38.462 0.00 0.00 36.20 1.52
3318 3508 3.096489 TGGTGAAATGTTGCTCTTTGC 57.904 42.857 0.00 0.00 43.25 3.68
3332 3522 3.134804 GCTCTTTGCTTATACTCCCTCCA 59.865 47.826 0.00 0.00 38.95 3.86
3411 3601 9.651913 AAATGAGTGAACAAACACATTAAAACT 57.348 25.926 0.00 0.00 39.46 2.66
3493 3683 9.236006 GAGGGAGTATGAATTATTATTGTGCAT 57.764 33.333 0.00 0.00 0.00 3.96
3863 4082 2.054799 TCCAGGAGTGCTAAGTTGGTT 58.945 47.619 0.00 0.00 0.00 3.67
3978 4197 3.548014 CGTCAAATGAAACTTGAACCGCT 60.548 43.478 0.00 0.00 0.00 5.52
4134 4475 8.190784 GGATTCCTTTGTTGGTTATATCTGTTG 58.809 37.037 0.00 0.00 0.00 3.33
4270 4611 7.101652 TCTACAATGCTACAAGAGGTAAGAG 57.898 40.000 0.00 0.00 0.00 2.85
4278 4619 6.436218 TGCTACAAGAGGTAAGAGTGATGTTA 59.564 38.462 0.00 0.00 0.00 2.41
4333 4674 6.317140 TCTCCACAATTTATTCTCATCAGCAC 59.683 38.462 0.00 0.00 0.00 4.40
4513 4854 0.110486 TTTTGGTCTGGGCACTCCTC 59.890 55.000 0.00 0.00 36.20 3.71
4647 4988 6.562455 GCGAGAAGTAAGAGACTGTCAAAAAC 60.562 42.308 10.88 3.24 38.87 2.43
4655 4996 7.736447 AAGAGACTGTCAAAAACTTGATAGG 57.264 36.000 10.88 1.70 42.27 2.57
4667 5008 2.012673 CTTGATAGGTTCTGTGCCAGC 58.987 52.381 0.00 0.00 0.00 4.85
4704 5045 1.740296 GGAGCACATGTAACGGCGT 60.740 57.895 6.77 6.77 0.00 5.68
4778 5119 1.003464 TGCACAGCTTGAAGAGGCATA 59.997 47.619 0.00 0.00 0.00 3.14
4801 5142 0.376852 CATGTGCGTCCCCGTATTTG 59.623 55.000 0.00 0.00 36.15 2.32
4860 5201 6.892310 TCTGTCATCTGTCAAACATAATCG 57.108 37.500 0.00 0.00 0.00 3.34
4869 5210 4.803613 TGTCAAACATAATCGGATGACTCG 59.196 41.667 7.06 0.00 38.34 4.18
4922 5263 3.179443 TGTCGAGGATAAAGTCATGCC 57.821 47.619 0.00 0.00 0.00 4.40
4924 5265 3.181475 TGTCGAGGATAAAGTCATGCCTC 60.181 47.826 0.00 0.00 41.29 4.70
4964 5305 2.613026 TCTCACGTGGAGCTGAAAAA 57.387 45.000 17.00 0.00 43.70 1.94
4971 5312 3.243839 ACGTGGAGCTGAAAAATGCAAAT 60.244 39.130 0.00 0.00 0.00 2.32
4984 5325 9.512435 TGAAAAATGCAAATAAAACCAATTGTG 57.488 25.926 4.43 0.00 0.00 3.33
5031 5373 6.767423 TGCATAATAGCTGATGTGTTGTACAT 59.233 34.615 0.00 0.00 43.19 2.29
5077 5419 4.755266 ACAAGTAGTTGTAGCCCCTATG 57.245 45.455 14.37 0.00 45.48 2.23
5078 5420 4.101856 ACAAGTAGTTGTAGCCCCTATGT 58.898 43.478 14.37 0.00 45.48 2.29
5079 5421 5.274822 ACAAGTAGTTGTAGCCCCTATGTA 58.725 41.667 14.37 0.00 45.48 2.29
5080 5422 5.128335 ACAAGTAGTTGTAGCCCCTATGTAC 59.872 44.000 14.37 0.00 45.48 2.90
5081 5423 4.875389 AGTAGTTGTAGCCCCTATGTACA 58.125 43.478 0.00 0.00 0.00 2.90
5082 5424 5.274822 AGTAGTTGTAGCCCCTATGTACAA 58.725 41.667 0.00 0.00 34.94 2.41
5083 5425 4.755266 AGTTGTAGCCCCTATGTACAAG 57.245 45.455 0.00 0.00 37.34 3.16
5084 5426 4.101856 AGTTGTAGCCCCTATGTACAAGT 58.898 43.478 0.00 0.00 37.34 3.16
5085 5427 5.274822 AGTTGTAGCCCCTATGTACAAGTA 58.725 41.667 0.00 0.00 38.14 2.24
5086 5428 5.363005 AGTTGTAGCCCCTATGTACAAGTAG 59.637 44.000 0.00 0.00 38.14 2.57
5087 5429 4.875389 TGTAGCCCCTATGTACAAGTAGT 58.125 43.478 0.00 0.00 0.00 2.73
5088 5430 5.274822 TGTAGCCCCTATGTACAAGTAGTT 58.725 41.667 0.00 0.00 0.00 2.24
5089 5431 4.755266 AGCCCCTATGTACAAGTAGTTG 57.245 45.455 8.81 8.81 39.82 3.16
5090 5432 3.118371 AGCCCCTATGTACAAGTAGTTGC 60.118 47.826 10.30 3.36 37.14 4.17
5091 5433 3.118371 GCCCCTATGTACAAGTAGTTGCT 60.118 47.826 10.30 1.02 37.14 3.91
5119 5461 7.862372 GCATGGAAATATCTAATGAGCGAAAAA 59.138 33.333 0.00 0.00 0.00 1.94
5128 5470 6.086222 TCTAATGAGCGAAAAAGCAATTGTC 58.914 36.000 7.40 0.00 40.15 3.18
5182 5836 5.694910 TCGTCTTTGTTTTCCTCACAGATAC 59.305 40.000 0.00 0.00 0.00 2.24
5184 5838 6.128795 CGTCTTTGTTTTCCTCACAGATACTC 60.129 42.308 0.00 0.00 0.00 2.59
5185 5839 6.147985 GTCTTTGTTTTCCTCACAGATACTCC 59.852 42.308 0.00 0.00 0.00 3.85
5186 5840 4.553330 TGTTTTCCTCACAGATACTCCC 57.447 45.455 0.00 0.00 0.00 4.30
5187 5841 4.168101 TGTTTTCCTCACAGATACTCCCT 58.832 43.478 0.00 0.00 0.00 4.20
5188 5842 4.223032 TGTTTTCCTCACAGATACTCCCTC 59.777 45.833 0.00 0.00 0.00 4.30
5189 5843 2.757894 TCCTCACAGATACTCCCTCC 57.242 55.000 0.00 0.00 0.00 4.30
5190 5844 1.133761 TCCTCACAGATACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
5191 5845 1.410365 CCTCACAGATACTCCCTCCGT 60.410 57.143 0.00 0.00 0.00 4.69
5193 5847 2.099921 CTCACAGATACTCCCTCCGTTG 59.900 54.545 0.00 0.00 0.00 4.10
5194 5848 0.824759 ACAGATACTCCCTCCGTTGC 59.175 55.000 0.00 0.00 0.00 4.17
5196 5850 1.207089 CAGATACTCCCTCCGTTGCAA 59.793 52.381 0.00 0.00 0.00 4.08
5198 5852 2.304761 AGATACTCCCTCCGTTGCAAAA 59.695 45.455 0.00 0.00 0.00 2.44
5199 5853 2.871096 TACTCCCTCCGTTGCAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
5201 5855 2.711542 ACTCCCTCCGTTGCAAAATAG 58.288 47.619 0.00 0.00 0.00 1.73
5203 5857 3.054361 ACTCCCTCCGTTGCAAAATAGAT 60.054 43.478 0.00 0.00 0.00 1.98
5204 5858 3.278574 TCCCTCCGTTGCAAAATAGATG 58.721 45.455 0.00 0.00 0.00 2.90
5206 5860 3.694072 CCCTCCGTTGCAAAATAGATGAA 59.306 43.478 0.00 0.00 0.00 2.57
5207 5861 4.438744 CCCTCCGTTGCAAAATAGATGAAC 60.439 45.833 0.00 0.00 0.00 3.18
5210 5864 4.520874 TCCGTTGCAAAATAGATGAACCAA 59.479 37.500 0.00 0.00 0.00 3.67
5211 5865 4.621034 CCGTTGCAAAATAGATGAACCAAC 59.379 41.667 0.00 0.00 0.00 3.77
5213 5867 5.920273 CGTTGCAAAATAGATGAACCAACTT 59.080 36.000 0.00 0.00 31.70 2.66
5214 5868 6.420604 CGTTGCAAAATAGATGAACCAACTTT 59.579 34.615 0.00 0.00 31.70 2.66
5257 5911 9.893305 AAAGTTGAGTCATTTATTTTAGAACGG 57.107 29.630 0.00 0.00 0.00 4.44
5258 5912 8.040716 AGTTGAGTCATTTATTTTAGAACGGG 57.959 34.615 0.00 0.00 0.00 5.28
5259 5913 7.881232 AGTTGAGTCATTTATTTTAGAACGGGA 59.119 33.333 0.00 0.00 0.00 5.14
5260 5914 7.843490 TGAGTCATTTATTTTAGAACGGGAG 57.157 36.000 0.00 0.00 0.00 4.30
5309 5965 5.590530 TGCACATAAACTGGTCACTTTTT 57.409 34.783 0.00 0.00 0.00 1.94
5334 5990 4.106925 GCTGCTGCTACAGGGGCT 62.107 66.667 8.53 0.00 38.16 5.19
5361 6017 1.432024 GGTGGGCCTAGACTATAGGGA 59.568 57.143 4.53 0.00 35.29 4.20
5365 6021 3.602922 TGGGCCTAGACTATAGGGATGAT 59.397 47.826 4.53 0.00 35.29 2.45
5446 6118 0.961019 TACCGCGTACTCAACACCTT 59.039 50.000 4.92 0.00 0.00 3.50
5454 6126 0.108585 ACTCAACACCTTGCGGTCAT 59.891 50.000 0.00 0.00 43.24 3.06
5455 6127 1.238439 CTCAACACCTTGCGGTCATT 58.762 50.000 0.00 0.00 43.24 2.57
5456 6128 1.608590 CTCAACACCTTGCGGTCATTT 59.391 47.619 0.00 0.00 43.24 2.32
5457 6129 2.811431 CTCAACACCTTGCGGTCATTTA 59.189 45.455 0.00 0.00 43.24 1.40
5458 6130 2.550606 TCAACACCTTGCGGTCATTTAC 59.449 45.455 0.00 0.00 43.24 2.01
5459 6131 1.530323 ACACCTTGCGGTCATTTACC 58.470 50.000 0.00 0.00 43.24 2.85
5472 6144 5.260027 GTCATTTACCACGTACTCAACAC 57.740 43.478 0.00 0.00 0.00 3.32
5473 6145 4.151157 GTCATTTACCACGTACTCAACACC 59.849 45.833 0.00 0.00 0.00 4.16
5474 6146 4.039488 TCATTTACCACGTACTCAACACCT 59.961 41.667 0.00 0.00 0.00 4.00
5475 6147 4.405116 TTTACCACGTACTCAACACCTT 57.595 40.909 0.00 0.00 0.00 3.50
5476 6148 5.528043 TTTACCACGTACTCAACACCTTA 57.472 39.130 0.00 0.00 0.00 2.69
5477 6149 3.375782 ACCACGTACTCAACACCTTAC 57.624 47.619 0.00 0.00 0.00 2.34
5478 6150 2.287788 ACCACGTACTCAACACCTTACG 60.288 50.000 0.00 0.00 42.36 3.18
5479 6151 2.322161 CACGTACTCAACACCTTACGG 58.678 52.381 5.15 0.00 41.25 4.02
5481 6153 2.030805 ACGTACTCAACACCTTACGGTC 60.031 50.000 5.15 0.00 43.24 4.79
5482 6154 2.030893 CGTACTCAACACCTTACGGTCA 60.031 50.000 0.00 0.00 43.24 4.02
5483 6155 2.814280 ACTCAACACCTTACGGTCAG 57.186 50.000 0.00 0.00 43.24 3.51
5484 6156 2.313317 ACTCAACACCTTACGGTCAGA 58.687 47.619 0.00 0.00 43.24 3.27
5485 6157 2.296471 ACTCAACACCTTACGGTCAGAG 59.704 50.000 8.76 8.76 43.24 3.35
5486 6158 1.000506 TCAACACCTTACGGTCAGAGC 59.999 52.381 0.00 0.00 43.24 4.09
5487 6159 1.045407 AACACCTTACGGTCAGAGCA 58.955 50.000 0.00 0.00 43.24 4.26
5488 6160 1.045407 ACACCTTACGGTCAGAGCAA 58.955 50.000 0.00 0.00 43.24 3.91
5489 6161 1.414919 ACACCTTACGGTCAGAGCAAA 59.585 47.619 0.00 0.00 43.24 3.68
5490 6162 2.038557 ACACCTTACGGTCAGAGCAAAT 59.961 45.455 0.00 0.00 43.24 2.32
5491 6163 3.259876 ACACCTTACGGTCAGAGCAAATA 59.740 43.478 0.00 0.00 43.24 1.40
5492 6164 3.617263 CACCTTACGGTCAGAGCAAATAC 59.383 47.826 0.00 0.00 43.24 1.89
5493 6165 3.259876 ACCTTACGGTCAGAGCAAATACA 59.740 43.478 0.00 0.00 40.27 2.29
5494 6166 3.617263 CCTTACGGTCAGAGCAAATACAC 59.383 47.826 0.00 0.00 0.00 2.90
5495 6167 2.094762 ACGGTCAGAGCAAATACACC 57.905 50.000 0.00 0.00 0.00 4.16
5496 6168 1.346395 ACGGTCAGAGCAAATACACCA 59.654 47.619 0.00 0.00 0.00 4.17
5497 6169 1.732259 CGGTCAGAGCAAATACACCAC 59.268 52.381 0.00 0.00 0.00 4.16
5498 6170 2.612972 CGGTCAGAGCAAATACACCACT 60.613 50.000 0.00 0.00 0.00 4.00
5499 6171 3.003480 GGTCAGAGCAAATACACCACTC 58.997 50.000 0.00 0.00 0.00 3.51
5500 6172 3.557054 GGTCAGAGCAAATACACCACTCA 60.557 47.826 0.00 0.00 0.00 3.41
5501 6173 4.065088 GTCAGAGCAAATACACCACTCAA 58.935 43.478 0.00 0.00 0.00 3.02
5502 6174 4.065088 TCAGAGCAAATACACCACTCAAC 58.935 43.478 0.00 0.00 0.00 3.18
5503 6175 3.814842 CAGAGCAAATACACCACTCAACA 59.185 43.478 0.00 0.00 0.00 3.33
5504 6176 3.815401 AGAGCAAATACACCACTCAACAC 59.185 43.478 0.00 0.00 0.00 3.32
5505 6177 2.884639 AGCAAATACACCACTCAACACC 59.115 45.455 0.00 0.00 0.00 4.16
5506 6178 2.884639 GCAAATACACCACTCAACACCT 59.115 45.455 0.00 0.00 0.00 4.00
5507 6179 3.317993 GCAAATACACCACTCAACACCTT 59.682 43.478 0.00 0.00 0.00 3.50
5508 6180 4.792704 GCAAATACACCACTCAACACCTTG 60.793 45.833 0.00 0.00 0.00 3.61
5509 6181 1.961793 TACACCACTCAACACCTTGC 58.038 50.000 0.00 0.00 0.00 4.01
5510 6182 1.095228 ACACCACTCAACACCTTGCG 61.095 55.000 0.00 0.00 0.00 4.85
5511 6183 1.525995 ACCACTCAACACCTTGCGG 60.526 57.895 0.00 0.00 0.00 5.69
5513 6185 1.507141 CCACTCAACACCTTGCGGTC 61.507 60.000 0.00 0.00 43.24 4.79
5514 6186 0.813610 CACTCAACACCTTGCGGTCA 60.814 55.000 0.00 0.00 43.24 4.02
5515 6187 0.108585 ACTCAACACCTTGCGGTCAT 59.891 50.000 0.00 0.00 43.24 3.06
5516 6188 1.238439 CTCAACACCTTGCGGTCATT 58.762 50.000 0.00 0.00 43.24 2.57
5517 6189 1.608590 CTCAACACCTTGCGGTCATTT 59.391 47.619 0.00 0.00 43.24 2.32
5518 6190 2.811431 CTCAACACCTTGCGGTCATTTA 59.189 45.455 0.00 0.00 43.24 1.40
5519 6191 2.550606 TCAACACCTTGCGGTCATTTAC 59.449 45.455 0.00 0.00 43.24 2.01
5520 6192 1.530323 ACACCTTGCGGTCATTTACC 58.470 50.000 0.00 0.00 43.24 2.85
5533 6205 5.260027 GTCATTTACCACGTACTCAACAC 57.740 43.478 0.00 0.00 0.00 3.32
5534 6206 4.151157 GTCATTTACCACGTACTCAACACC 59.849 45.833 0.00 0.00 0.00 4.16
5535 6207 4.039488 TCATTTACCACGTACTCAACACCT 59.961 41.667 0.00 0.00 0.00 4.00
5536 6208 4.405116 TTTACCACGTACTCAACACCTT 57.595 40.909 0.00 0.00 0.00 3.50
5537 6209 5.528043 TTTACCACGTACTCAACACCTTA 57.472 39.130 0.00 0.00 0.00 2.69
5538 6210 3.375782 ACCACGTACTCAACACCTTAC 57.624 47.619 0.00 0.00 0.00 2.34
5539 6211 2.287788 ACCACGTACTCAACACCTTACG 60.288 50.000 0.00 0.00 42.36 3.18
5540 6212 2.322161 CACGTACTCAACACCTTACGG 58.678 52.381 5.15 0.00 41.25 4.02
5542 6214 2.030805 ACGTACTCAACACCTTACGGTC 60.031 50.000 5.15 0.00 43.24 4.79
5543 6215 2.030893 CGTACTCAACACCTTACGGTCA 60.031 50.000 0.00 0.00 43.24 4.02
5544 6216 2.814280 ACTCAACACCTTACGGTCAG 57.186 50.000 0.00 0.00 43.24 3.51
5562 6234 3.815401 GTCAGAGCAAATACACCACAAGT 59.185 43.478 0.00 0.00 0.00 3.16
5604 6276 4.722535 TCCCCGGCAAGAGCTCCT 62.723 66.667 10.93 0.00 41.70 3.69
5620 6292 1.298953 TCCTGGCATAAAAGGAGGCT 58.701 50.000 0.00 0.00 37.68 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.618053 CGTGAGGTCCGCTCTAATTTT 58.382 47.619 0.00 0.00 0.00 1.82
1 2 2.295253 CGTGAGGTCCGCTCTAATTT 57.705 50.000 0.00 0.00 0.00 1.82
10 11 0.591170 AATTTTGTGCGTGAGGTCCG 59.409 50.000 0.00 0.00 0.00 4.79
11 12 2.793278 AAATTTTGTGCGTGAGGTCC 57.207 45.000 0.00 0.00 0.00 4.46
55 56 8.846211 CCTGGTTAGAAAAGAAGTCACAAATAA 58.154 33.333 0.00 0.00 0.00 1.40
56 57 7.996644 ACCTGGTTAGAAAAGAAGTCACAAATA 59.003 33.333 0.00 0.00 0.00 1.40
57 58 6.833933 ACCTGGTTAGAAAAGAAGTCACAAAT 59.166 34.615 0.00 0.00 0.00 2.32
58 59 6.094881 CACCTGGTTAGAAAAGAAGTCACAAA 59.905 38.462 0.00 0.00 0.00 2.83
59 60 5.588648 CACCTGGTTAGAAAAGAAGTCACAA 59.411 40.000 0.00 0.00 0.00 3.33
60 61 5.123227 CACCTGGTTAGAAAAGAAGTCACA 58.877 41.667 0.00 0.00 0.00 3.58
61 62 4.023963 GCACCTGGTTAGAAAAGAAGTCAC 60.024 45.833 0.00 0.00 0.00 3.67
62 63 4.134563 GCACCTGGTTAGAAAAGAAGTCA 58.865 43.478 0.00 0.00 0.00 3.41
63 64 4.134563 TGCACCTGGTTAGAAAAGAAGTC 58.865 43.478 0.00 0.00 0.00 3.01
64 65 4.137543 CTGCACCTGGTTAGAAAAGAAGT 58.862 43.478 0.00 0.00 0.00 3.01
65 66 4.389374 TCTGCACCTGGTTAGAAAAGAAG 58.611 43.478 0.00 0.00 0.00 2.85
66 67 4.431416 TCTGCACCTGGTTAGAAAAGAA 57.569 40.909 0.00 0.00 0.00 2.52
67 68 4.640771 ATCTGCACCTGGTTAGAAAAGA 57.359 40.909 12.91 4.19 0.00 2.52
68 69 6.206634 TGTTTATCTGCACCTGGTTAGAAAAG 59.793 38.462 12.91 0.00 0.00 2.27
69 70 6.016610 GTGTTTATCTGCACCTGGTTAGAAAA 60.017 38.462 12.91 11.51 0.00 2.29
70 71 5.472137 GTGTTTATCTGCACCTGGTTAGAAA 59.528 40.000 12.91 7.55 0.00 2.52
71 72 5.001232 GTGTTTATCTGCACCTGGTTAGAA 58.999 41.667 12.91 3.04 0.00 2.10
72 73 4.286032 AGTGTTTATCTGCACCTGGTTAGA 59.714 41.667 11.67 11.67 36.35 2.10
73 74 4.579869 AGTGTTTATCTGCACCTGGTTAG 58.420 43.478 0.00 0.00 36.35 2.34
74 75 4.634012 AGTGTTTATCTGCACCTGGTTA 57.366 40.909 0.00 0.00 36.35 2.85
75 76 3.508845 AGTGTTTATCTGCACCTGGTT 57.491 42.857 0.00 0.00 36.35 3.67
76 77 3.326588 TGTAGTGTTTATCTGCACCTGGT 59.673 43.478 0.00 0.00 36.35 4.00
77 78 3.684788 GTGTAGTGTTTATCTGCACCTGG 59.315 47.826 0.00 0.00 40.69 4.45
78 79 4.569943 AGTGTAGTGTTTATCTGCACCTG 58.430 43.478 9.67 0.00 45.06 4.00
79 80 4.618460 CGAGTGTAGTGTTTATCTGCACCT 60.618 45.833 9.67 0.28 45.06 4.00
80 81 3.612860 CGAGTGTAGTGTTTATCTGCACC 59.387 47.826 9.67 3.00 45.06 5.01
81 82 4.235360 ACGAGTGTAGTGTTTATCTGCAC 58.765 43.478 6.15 6.15 44.58 4.57
82 83 4.514781 ACGAGTGTAGTGTTTATCTGCA 57.485 40.909 0.00 0.00 0.00 4.41
83 84 5.389516 CCAAACGAGTGTAGTGTTTATCTGC 60.390 44.000 0.00 0.00 34.29 4.26
84 85 5.924254 TCCAAACGAGTGTAGTGTTTATCTG 59.076 40.000 0.00 0.00 34.29 2.90
85 86 6.092955 TCCAAACGAGTGTAGTGTTTATCT 57.907 37.500 0.00 0.00 34.29 1.98
86 87 6.390987 CTCCAAACGAGTGTAGTGTTTATC 57.609 41.667 0.00 0.00 34.29 1.75
99 100 6.092259 CCCAGTCTTAAATAACTCCAAACGAG 59.908 42.308 0.00 0.00 44.95 4.18
100 101 5.935789 CCCAGTCTTAAATAACTCCAAACGA 59.064 40.000 0.00 0.00 0.00 3.85
101 102 5.391629 GCCCAGTCTTAAATAACTCCAAACG 60.392 44.000 0.00 0.00 0.00 3.60
102 103 5.475564 TGCCCAGTCTTAAATAACTCCAAAC 59.524 40.000 0.00 0.00 0.00 2.93
103 104 5.636123 TGCCCAGTCTTAAATAACTCCAAA 58.364 37.500 0.00 0.00 0.00 3.28
104 105 5.249780 TGCCCAGTCTTAAATAACTCCAA 57.750 39.130 0.00 0.00 0.00 3.53
105 106 4.919774 TGCCCAGTCTTAAATAACTCCA 57.080 40.909 0.00 0.00 0.00 3.86
106 107 6.827727 TCTATGCCCAGTCTTAAATAACTCC 58.172 40.000 0.00 0.00 0.00 3.85
107 108 8.613482 GTTTCTATGCCCAGTCTTAAATAACTC 58.387 37.037 0.00 0.00 0.00 3.01
108 109 8.107095 TGTTTCTATGCCCAGTCTTAAATAACT 58.893 33.333 0.00 0.00 0.00 2.24
109 110 8.182227 GTGTTTCTATGCCCAGTCTTAAATAAC 58.818 37.037 0.00 0.00 0.00 1.89
110 111 8.107095 AGTGTTTCTATGCCCAGTCTTAAATAA 58.893 33.333 0.00 0.00 0.00 1.40
111 112 7.630082 AGTGTTTCTATGCCCAGTCTTAAATA 58.370 34.615 0.00 0.00 0.00 1.40
112 113 6.485171 AGTGTTTCTATGCCCAGTCTTAAAT 58.515 36.000 0.00 0.00 0.00 1.40
113 114 5.876357 AGTGTTTCTATGCCCAGTCTTAAA 58.124 37.500 0.00 0.00 0.00 1.52
114 115 5.499004 AGTGTTTCTATGCCCAGTCTTAA 57.501 39.130 0.00 0.00 0.00 1.85
133 134 4.861210 AGAAGTGAGAAACGAGTGTAGTG 58.139 43.478 0.00 0.00 0.00 2.74
134 135 5.517322 AAGAAGTGAGAAACGAGTGTAGT 57.483 39.130 0.00 0.00 0.00 2.73
149 150 3.003689 ACAAGATCGCCACAAAAGAAGTG 59.996 43.478 0.00 0.00 36.76 3.16
150 151 3.214328 ACAAGATCGCCACAAAAGAAGT 58.786 40.909 0.00 0.00 0.00 3.01
159 160 6.912591 CCATATAAAAAGAACAAGATCGCCAC 59.087 38.462 0.00 0.00 0.00 5.01
167 168 8.306761 AGCAAGTTCCCATATAAAAAGAACAAG 58.693 33.333 0.00 0.00 39.39 3.16
173 174 6.212888 AGCAGCAAGTTCCCATATAAAAAG 57.787 37.500 0.00 0.00 0.00 2.27
178 179 4.502105 TGAAGCAGCAAGTTCCCATATA 57.498 40.909 0.00 0.00 0.00 0.86
192 193 8.442632 TTGGTCTAGATGAATAAATGAAGCAG 57.557 34.615 0.00 0.00 0.00 4.24
229 230 7.107639 CCTTCGGGTTGTATTTCCAAATTAT 57.892 36.000 0.00 0.00 0.00 1.28
259 260 9.606631 TGAATAAAGCATGTAAAACTTGGTTTT 57.393 25.926 20.70 12.06 45.40 2.43
291 292 4.826556 GCTCATAAGTTAGCTAGGGATGG 58.173 47.826 0.00 0.00 35.80 3.51
341 342 5.559148 TTTTTGCCAAGTACCCAATCAAT 57.441 34.783 0.00 0.00 0.00 2.57
350 351 8.196802 AGTTTCTTGAAATTTTTGCCAAGTAC 57.803 30.769 13.85 12.93 37.74 2.73
397 401 4.776322 TTCCGTGCATGGGCCTCG 62.776 66.667 24.78 4.25 40.13 4.63
398 402 3.134127 GTTCCGTGCATGGGCCTC 61.134 66.667 24.78 9.10 40.13 4.70
468 472 3.248363 TGAAATGCTTGTGTGTCGAAGAG 59.752 43.478 0.00 0.00 36.95 2.85
490 494 1.428912 TCCCCCAAAAGCAAGATCACT 59.571 47.619 0.00 0.00 0.00 3.41
571 575 9.647797 GAGAATTAACGGACCCAAAATTAAAAT 57.352 29.630 0.00 0.00 0.00 1.82
591 595 3.509184 GCTGCTTCCTTCCTTTGAGAATT 59.491 43.478 0.00 0.00 0.00 2.17
823 827 2.112190 TGTGGGTGGGTTTCCTTTTTC 58.888 47.619 0.00 0.00 0.00 2.29
828 832 2.513895 CGTGTGGGTGGGTTTCCT 59.486 61.111 0.00 0.00 0.00 3.36
829 833 3.292159 GCGTGTGGGTGGGTTTCC 61.292 66.667 0.00 0.00 0.00 3.13
830 834 3.292159 GGCGTGTGGGTGGGTTTC 61.292 66.667 0.00 0.00 0.00 2.78
877 883 2.665185 GGTGTGTTTCCGCTCGCT 60.665 61.111 0.00 0.00 0.00 4.93
1494 1500 3.333189 CATGCGGCGTCGATGAGG 61.333 66.667 16.53 0.00 39.00 3.86
1525 1531 4.501571 GGATCACGCCTTTCAGCTATCTAA 60.502 45.833 0.00 0.00 0.00 2.10
1533 1539 1.936547 GCTAAGGATCACGCCTTTCAG 59.063 52.381 0.00 0.00 45.85 3.02
1619 1625 0.694771 ATGTCTTCTGCAAGCCCTCA 59.305 50.000 0.00 0.00 0.00 3.86
1671 1677 1.372683 GGAGCCAGAGAACAGCACA 59.627 57.895 0.00 0.00 0.00 4.57
1684 1690 0.603065 AATTGTTTGCCTTCGGAGCC 59.397 50.000 0.00 0.00 0.00 4.70
1685 1691 1.669795 CCAATTGTTTGCCTTCGGAGC 60.670 52.381 4.43 0.00 0.00 4.70
1692 1698 3.310727 GCAAGCCAATTGTTTGCCT 57.689 47.368 23.87 2.88 40.89 4.75
1714 1720 1.354337 CGTCAGCTCCATCAACCACG 61.354 60.000 0.00 0.00 0.00 4.94
1715 1721 0.037326 TCGTCAGCTCCATCAACCAC 60.037 55.000 0.00 0.00 0.00 4.16
1720 1726 1.478631 AGTGATCGTCAGCTCCATCA 58.521 50.000 0.00 0.00 0.00 3.07
1721 1727 2.593346 AAGTGATCGTCAGCTCCATC 57.407 50.000 0.00 0.00 0.00 3.51
1724 1730 1.534175 CCGTAAGTGATCGTCAGCTCC 60.534 57.143 0.00 0.00 0.00 4.70
2163 2319 5.756195 TCAATAAAGATGGCTGTATGCAC 57.244 39.130 0.00 0.00 45.15 4.57
2252 2421 4.851558 GCAAAAACACTCCACATTATCGAC 59.148 41.667 0.00 0.00 0.00 4.20
2271 2441 0.178987 TTTTAGGCACGGGGAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
2281 2451 0.881600 ACGACACCGGTTTTAGGCAC 60.882 55.000 2.97 0.00 40.78 5.01
2284 2454 1.620413 GCGACGACACCGGTTTTAGG 61.620 60.000 2.97 0.00 40.78 2.69
2425 2596 1.133699 TGGCAAGGATGATGTGGATCC 60.134 52.381 4.20 4.20 39.94 3.36
2431 2602 0.107508 CGGACTGGCAAGGATGATGT 60.108 55.000 0.00 0.00 0.00 3.06
2649 2826 2.111384 GGAGATGTCAAGTCAGGCCTA 58.889 52.381 3.98 0.00 0.00 3.93
2654 2831 0.803768 CGGCGGAGATGTCAAGTCAG 60.804 60.000 0.00 0.00 0.00 3.51
2670 2847 3.793144 CTTGCACGGAGCTTCGGC 61.793 66.667 20.69 19.00 45.94 5.54
2805 2983 0.819582 CATGCTGCTCCGGGAAAAAT 59.180 50.000 0.00 0.00 0.00 1.82
2810 2990 2.685017 ACTCATGCTGCTCCGGGA 60.685 61.111 0.00 0.00 0.00 5.14
2876 3056 2.807895 CGGACGATGGCGACGTTT 60.808 61.111 9.78 0.00 43.97 3.60
2929 3109 2.821366 TAGTCCCGGACGAGTCGC 60.821 66.667 13.59 5.40 37.67 5.19
3045 3227 1.315257 GGTCGGCAATGCATCCAGTT 61.315 55.000 7.79 0.00 0.00 3.16
3052 3234 2.359850 GGACTGGTCGGCAATGCA 60.360 61.111 7.79 0.00 0.00 3.96
3091 3273 3.880846 CAGGCTTTGGATCGGCGC 61.881 66.667 0.00 0.00 0.00 6.53
3247 3437 9.860898 CCATTTTACAGATCGATATGTCATCTA 57.139 33.333 27.58 8.65 33.74 1.98
3249 3439 8.438513 CACCATTTTACAGATCGATATGTCATC 58.561 37.037 27.58 0.00 33.74 2.92
3260 3450 6.881602 AGGAACTTCTCACCATTTTACAGATC 59.118 38.462 0.00 0.00 27.25 2.75
3297 3487 3.656559 GCAAAGAGCAACATTTCACCAT 58.343 40.909 0.00 0.00 44.79 3.55
3368 3558 8.029522 TCACTCATTTCAGTCTGTATGTAGTTC 58.970 37.037 13.61 0.00 0.00 3.01
3380 3570 5.879237 TGTGTTTGTTCACTCATTTCAGTC 58.121 37.500 0.00 0.00 38.90 3.51
3814 4033 2.749621 CAGAATCAACTGGCCCAAGTAC 59.250 50.000 0.00 0.00 34.64 2.73
3863 4082 6.833933 TCATACTTGAGTTACTCAGATAGGCA 59.166 38.462 14.99 3.90 41.75 4.75
4134 4475 6.073548 CCATTAAGAGCAGGATCGTGATTAAC 60.074 42.308 19.26 1.29 0.00 2.01
4190 4531 2.370189 AGATGTATAACCCAGAGCTGCC 59.630 50.000 0.00 0.00 0.00 4.85
4270 4611 3.412386 ACTGGTTGGAAGCTAACATCAC 58.588 45.455 0.56 0.00 0.00 3.06
4278 4619 1.615392 GCATTGAACTGGTTGGAAGCT 59.385 47.619 0.00 0.00 0.00 3.74
4513 4854 2.762535 TAGAGGAACCTGAAAAGGCG 57.237 50.000 0.00 0.00 0.00 5.52
4667 5008 0.670546 CAGTGAAGTGCAGTACCCGG 60.671 60.000 0.00 0.00 0.00 5.73
4704 5045 5.131475 ACTTACTCTTCAAACCCCTGTACAA 59.869 40.000 0.00 0.00 0.00 2.41
4801 5142 7.012421 CACCAGCTTATACCATCTTTTTAGTCC 59.988 40.741 0.00 0.00 0.00 3.85
4860 5201 0.741221 GAGTTGTGGGCGAGTCATCC 60.741 60.000 0.00 0.00 0.00 3.51
4899 5240 3.309954 GCATGACTTTATCCTCGACAACC 59.690 47.826 0.00 0.00 0.00 3.77
4922 5263 3.672808 AGTTGTGCTGAAATGGAGAGAG 58.327 45.455 0.00 0.00 0.00 3.20
4924 5265 4.518211 AGAAAGTTGTGCTGAAATGGAGAG 59.482 41.667 0.00 0.00 0.00 3.20
4964 5305 5.048852 GCCACACAATTGGTTTTATTTGCAT 60.049 36.000 10.83 0.00 39.09 3.96
4971 5312 6.717540 ACTATGTAGCCACACAATTGGTTTTA 59.282 34.615 10.83 0.00 39.09 1.52
4984 5325 4.408182 AACCATCTGACTATGTAGCCAC 57.592 45.455 0.00 0.00 0.00 5.01
5031 5373 5.017431 ACATAGGGGCTACTTCTCCCATATA 59.983 44.000 4.42 0.00 44.90 0.86
5067 5409 4.100498 GCAACTACTTGTACATAGGGGCTA 59.900 45.833 0.00 0.00 0.00 3.93
5069 5411 3.118371 AGCAACTACTTGTACATAGGGGC 60.118 47.826 0.00 5.14 0.00 5.80
5070 5412 4.755266 AGCAACTACTTGTACATAGGGG 57.245 45.455 0.00 0.00 0.00 4.79
5071 5413 5.163447 TGCTAGCAACTACTTGTACATAGGG 60.163 44.000 16.84 0.00 0.00 3.53
5072 5414 5.902681 TGCTAGCAACTACTTGTACATAGG 58.097 41.667 16.84 0.00 0.00 2.57
5073 5415 6.422100 CCATGCTAGCAACTACTTGTACATAG 59.578 42.308 23.54 0.00 0.00 2.23
5074 5416 6.097696 TCCATGCTAGCAACTACTTGTACATA 59.902 38.462 23.54 0.00 0.00 2.29
5075 5417 5.104941 TCCATGCTAGCAACTACTTGTACAT 60.105 40.000 23.54 0.00 0.00 2.29
5076 5418 4.221924 TCCATGCTAGCAACTACTTGTACA 59.778 41.667 23.54 0.00 0.00 2.90
5077 5419 4.755411 TCCATGCTAGCAACTACTTGTAC 58.245 43.478 23.54 0.00 0.00 2.90
5078 5420 5.414789 TTCCATGCTAGCAACTACTTGTA 57.585 39.130 23.54 0.00 0.00 2.41
5079 5421 3.981071 TCCATGCTAGCAACTACTTGT 57.019 42.857 23.54 0.00 0.00 3.16
5080 5422 5.824904 ATTTCCATGCTAGCAACTACTTG 57.175 39.130 23.54 14.01 0.00 3.16
5081 5423 7.512992 AGATATTTCCATGCTAGCAACTACTT 58.487 34.615 23.54 8.52 0.00 2.24
5082 5424 7.072263 AGATATTTCCATGCTAGCAACTACT 57.928 36.000 23.54 0.74 0.00 2.57
5083 5425 8.833231 TTAGATATTTCCATGCTAGCAACTAC 57.167 34.615 23.54 6.64 0.00 2.73
5084 5426 9.440773 CATTAGATATTTCCATGCTAGCAACTA 57.559 33.333 23.54 6.84 0.00 2.24
5085 5427 8.159447 TCATTAGATATTTCCATGCTAGCAACT 58.841 33.333 23.54 2.55 0.00 3.16
5086 5428 8.327941 TCATTAGATATTTCCATGCTAGCAAC 57.672 34.615 23.54 5.04 0.00 4.17
5087 5429 7.120285 GCTCATTAGATATTTCCATGCTAGCAA 59.880 37.037 23.54 4.75 0.00 3.91
5088 5430 6.596888 GCTCATTAGATATTTCCATGCTAGCA 59.403 38.462 21.85 21.85 0.00 3.49
5089 5431 6.238049 CGCTCATTAGATATTTCCATGCTAGC 60.238 42.308 8.10 8.10 0.00 3.42
5090 5432 7.038048 TCGCTCATTAGATATTTCCATGCTAG 58.962 38.462 0.00 0.00 0.00 3.42
5091 5433 6.935167 TCGCTCATTAGATATTTCCATGCTA 58.065 36.000 0.00 0.00 0.00 3.49
5128 5470 5.139727 ACTAAGGATCAGATCTCACCAGAG 58.860 45.833 10.36 1.41 43.48 3.35
5182 5836 2.985896 TCTATTTTGCAACGGAGGGAG 58.014 47.619 0.00 0.00 0.00 4.30
5184 5838 3.278574 TCATCTATTTTGCAACGGAGGG 58.721 45.455 0.00 0.00 0.00 4.30
5185 5839 4.438744 GGTTCATCTATTTTGCAACGGAGG 60.439 45.833 0.00 0.00 0.00 4.30
5186 5840 4.155826 TGGTTCATCTATTTTGCAACGGAG 59.844 41.667 0.00 0.00 0.00 4.63
5187 5841 4.075682 TGGTTCATCTATTTTGCAACGGA 58.924 39.130 0.00 0.00 0.00 4.69
5188 5842 4.433186 TGGTTCATCTATTTTGCAACGG 57.567 40.909 0.00 0.00 0.00 4.44
5189 5843 5.460646 AGTTGGTTCATCTATTTTGCAACG 58.539 37.500 0.00 0.00 0.00 4.10
5190 5844 7.713764 AAAGTTGGTTCATCTATTTTGCAAC 57.286 32.000 0.00 0.00 0.00 4.17
5231 5885 9.893305 CCGTTCTAAAATAAATGACTCAACTTT 57.107 29.630 0.00 0.00 0.00 2.66
5232 5886 8.512138 CCCGTTCTAAAATAAATGACTCAACTT 58.488 33.333 0.00 0.00 0.00 2.66
5234 5888 8.036273 TCCCGTTCTAAAATAAATGACTCAAC 57.964 34.615 0.00 0.00 0.00 3.18
5235 5889 7.881232 ACTCCCGTTCTAAAATAAATGACTCAA 59.119 33.333 0.00 0.00 0.00 3.02
5236 5890 7.391620 ACTCCCGTTCTAAAATAAATGACTCA 58.608 34.615 0.00 0.00 0.00 3.41
5237 5891 7.845066 ACTCCCGTTCTAAAATAAATGACTC 57.155 36.000 0.00 0.00 0.00 3.36
5238 5892 8.537858 ACTACTCCCGTTCTAAAATAAATGACT 58.462 33.333 0.00 0.00 0.00 3.41
5239 5893 8.713737 ACTACTCCCGTTCTAAAATAAATGAC 57.286 34.615 0.00 0.00 0.00 3.06
5240 5894 9.158233 CAACTACTCCCGTTCTAAAATAAATGA 57.842 33.333 0.00 0.00 0.00 2.57
5241 5895 8.943002 ACAACTACTCCCGTTCTAAAATAAATG 58.057 33.333 0.00 0.00 0.00 2.32
5242 5896 8.943002 CACAACTACTCCCGTTCTAAAATAAAT 58.057 33.333 0.00 0.00 0.00 1.40
5243 5897 7.933033 ACACAACTACTCCCGTTCTAAAATAAA 59.067 33.333 0.00 0.00 0.00 1.40
5244 5898 7.444299 ACACAACTACTCCCGTTCTAAAATAA 58.556 34.615 0.00 0.00 0.00 1.40
5245 5899 6.996509 ACACAACTACTCCCGTTCTAAAATA 58.003 36.000 0.00 0.00 0.00 1.40
5246 5900 5.861727 ACACAACTACTCCCGTTCTAAAAT 58.138 37.500 0.00 0.00 0.00 1.82
5247 5901 5.280654 ACACAACTACTCCCGTTCTAAAA 57.719 39.130 0.00 0.00 0.00 1.52
5248 5902 4.942761 ACACAACTACTCCCGTTCTAAA 57.057 40.909 0.00 0.00 0.00 1.85
5249 5903 4.341806 TGAACACAACTACTCCCGTTCTAA 59.658 41.667 0.00 0.00 35.07 2.10
5250 5904 3.890756 TGAACACAACTACTCCCGTTCTA 59.109 43.478 0.00 0.00 35.07 2.10
5251 5905 2.696707 TGAACACAACTACTCCCGTTCT 59.303 45.455 0.00 0.00 35.07 3.01
5252 5906 3.102052 TGAACACAACTACTCCCGTTC 57.898 47.619 0.00 0.00 34.69 3.95
5253 5907 3.070446 TGATGAACACAACTACTCCCGTT 59.930 43.478 0.00 0.00 0.00 4.44
5254 5908 2.631062 TGATGAACACAACTACTCCCGT 59.369 45.455 0.00 0.00 0.00 5.28
5255 5909 3.313012 TGATGAACACAACTACTCCCG 57.687 47.619 0.00 0.00 0.00 5.14
5256 5910 4.894784 TCTTGATGAACACAACTACTCCC 58.105 43.478 0.00 0.00 0.00 4.30
5257 5911 5.784177 TCTCTTGATGAACACAACTACTCC 58.216 41.667 0.00 0.00 0.00 3.85
5258 5912 6.701841 TGTTCTCTTGATGAACACAACTACTC 59.298 38.462 5.36 0.00 45.77 2.59
5259 5913 6.582636 TGTTCTCTTGATGAACACAACTACT 58.417 36.000 5.36 0.00 45.77 2.57
5260 5914 6.844696 TGTTCTCTTGATGAACACAACTAC 57.155 37.500 5.36 0.00 45.77 2.73
5352 6008 2.644798 GCCACCCAATCATCCCTATAGT 59.355 50.000 0.00 0.00 0.00 2.12
5354 6010 2.644299 CTGCCACCCAATCATCCCTATA 59.356 50.000 0.00 0.00 0.00 1.31
5361 6017 1.380785 CAGGCTGCCACCCAATCAT 60.381 57.895 22.65 0.00 0.00 2.45
5396 6068 1.445410 TGATTCACCCGCGTCTTCG 60.445 57.895 4.92 0.00 40.37 3.79
5454 6126 4.405116 AAGGTGTTGAGTACGTGGTAAA 57.595 40.909 0.00 0.00 0.00 2.01
5455 6127 4.556501 CGTAAGGTGTTGAGTACGTGGTAA 60.557 45.833 0.00 0.00 35.71 2.85
5456 6128 3.058293 CGTAAGGTGTTGAGTACGTGGTA 60.058 47.826 0.00 0.00 35.71 3.25
5457 6129 2.287788 CGTAAGGTGTTGAGTACGTGGT 60.288 50.000 0.00 0.00 35.71 4.16
5458 6130 2.322161 CGTAAGGTGTTGAGTACGTGG 58.678 52.381 0.00 0.00 35.71 4.94
5473 6145 3.617263 GGTGTATTTGCTCTGACCGTAAG 59.383 47.826 0.00 0.00 0.00 2.34
5474 6146 3.007074 TGGTGTATTTGCTCTGACCGTAA 59.993 43.478 0.00 0.00 0.00 3.18
5475 6147 2.563620 TGGTGTATTTGCTCTGACCGTA 59.436 45.455 0.00 0.00 0.00 4.02
5476 6148 1.346395 TGGTGTATTTGCTCTGACCGT 59.654 47.619 0.00 0.00 0.00 4.83
5477 6149 1.732259 GTGGTGTATTTGCTCTGACCG 59.268 52.381 0.00 0.00 0.00 4.79
5478 6150 3.003480 GAGTGGTGTATTTGCTCTGACC 58.997 50.000 0.00 0.00 0.00 4.02
5479 6151 3.664107 TGAGTGGTGTATTTGCTCTGAC 58.336 45.455 0.00 0.00 0.00 3.51
5480 6152 4.065088 GTTGAGTGGTGTATTTGCTCTGA 58.935 43.478 0.00 0.00 0.00 3.27
5481 6153 3.814842 TGTTGAGTGGTGTATTTGCTCTG 59.185 43.478 0.00 0.00 0.00 3.35
5482 6154 3.815401 GTGTTGAGTGGTGTATTTGCTCT 59.185 43.478 0.00 0.00 0.00 4.09
5483 6155 3.058224 GGTGTTGAGTGGTGTATTTGCTC 60.058 47.826 0.00 0.00 0.00 4.26
5484 6156 2.884639 GGTGTTGAGTGGTGTATTTGCT 59.115 45.455 0.00 0.00 0.00 3.91
5485 6157 2.884639 AGGTGTTGAGTGGTGTATTTGC 59.115 45.455 0.00 0.00 0.00 3.68
5486 6158 4.792704 GCAAGGTGTTGAGTGGTGTATTTG 60.793 45.833 0.00 0.00 35.46 2.32
5487 6159 3.317993 GCAAGGTGTTGAGTGGTGTATTT 59.682 43.478 0.00 0.00 35.46 1.40
5488 6160 2.884639 GCAAGGTGTTGAGTGGTGTATT 59.115 45.455 0.00 0.00 35.46 1.89
5489 6161 2.504367 GCAAGGTGTTGAGTGGTGTAT 58.496 47.619 0.00 0.00 35.46 2.29
5490 6162 1.808512 CGCAAGGTGTTGAGTGGTGTA 60.809 52.381 0.00 0.00 35.46 2.90
5491 6163 1.095228 CGCAAGGTGTTGAGTGGTGT 61.095 55.000 0.00 0.00 35.46 4.16
5492 6164 1.648720 CGCAAGGTGTTGAGTGGTG 59.351 57.895 0.00 0.00 35.46 4.17
5493 6165 4.141144 CGCAAGGTGTTGAGTGGT 57.859 55.556 0.00 0.00 35.46 4.16
5511 6183 4.151157 GGTGTTGAGTACGTGGTAAATGAC 59.849 45.833 0.00 0.00 0.00 3.06
5512 6184 4.039488 AGGTGTTGAGTACGTGGTAAATGA 59.961 41.667 0.00 0.00 0.00 2.57
5513 6185 4.312443 AGGTGTTGAGTACGTGGTAAATG 58.688 43.478 0.00 0.00 0.00 2.32
5514 6186 4.612264 AGGTGTTGAGTACGTGGTAAAT 57.388 40.909 0.00 0.00 0.00 1.40
5515 6187 4.405116 AAGGTGTTGAGTACGTGGTAAA 57.595 40.909 0.00 0.00 0.00 2.01
5516 6188 4.556501 CGTAAGGTGTTGAGTACGTGGTAA 60.557 45.833 0.00 0.00 35.71 2.85
5517 6189 3.058293 CGTAAGGTGTTGAGTACGTGGTA 60.058 47.826 0.00 0.00 35.71 3.25
5518 6190 2.287788 CGTAAGGTGTTGAGTACGTGGT 60.288 50.000 0.00 0.00 35.71 4.16
5519 6191 2.322161 CGTAAGGTGTTGAGTACGTGG 58.678 52.381 0.00 0.00 35.71 4.94
5534 6206 3.617263 GGTGTATTTGCTCTGACCGTAAG 59.383 47.826 0.00 0.00 0.00 2.34
5535 6207 3.007074 TGGTGTATTTGCTCTGACCGTAA 59.993 43.478 0.00 0.00 0.00 3.18
5536 6208 2.563620 TGGTGTATTTGCTCTGACCGTA 59.436 45.455 0.00 0.00 0.00 4.02
5537 6209 1.346395 TGGTGTATTTGCTCTGACCGT 59.654 47.619 0.00 0.00 0.00 4.83
5538 6210 1.732259 GTGGTGTATTTGCTCTGACCG 59.268 52.381 0.00 0.00 0.00 4.79
5539 6211 2.778299 TGTGGTGTATTTGCTCTGACC 58.222 47.619 0.00 0.00 0.00 4.02
5540 6212 3.815401 ACTTGTGGTGTATTTGCTCTGAC 59.185 43.478 0.00 0.00 0.00 3.51
5541 6213 3.814842 CACTTGTGGTGTATTTGCTCTGA 59.185 43.478 0.00 0.00 40.79 3.27
5542 6214 3.058016 CCACTTGTGGTGTATTTGCTCTG 60.058 47.826 11.39 0.00 43.94 3.35
5543 6215 3.149196 CCACTTGTGGTGTATTTGCTCT 58.851 45.455 11.39 0.00 43.94 4.09
5544 6216 2.884639 ACCACTTGTGGTGTATTTGCTC 59.115 45.455 22.89 0.00 43.94 4.26
5562 6234 2.840038 AGATGCCTGTCTTGTCATACCA 59.160 45.455 0.00 0.00 0.00 3.25
5604 6276 2.658285 CATGAGCCTCCTTTTATGCCA 58.342 47.619 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.