Multiple sequence alignment - TraesCS1A01G164600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G164600 chr1A 100.000 5646 0 0 1 5646 297376107 297381752 0.000000e+00 10427.0
1 TraesCS1A01G164600 chr1D 93.438 2682 115 18 2999 5646 229067361 229070015 0.000000e+00 3921.0
2 TraesCS1A01G164600 chr1D 94.636 1715 68 11 1031 2726 229065655 229067364 0.000000e+00 2636.0
3 TraesCS1A01G164600 chr1D 85.510 490 23 12 3 488 229064575 229065020 8.570000e-128 468.0
4 TraesCS1A01G164600 chr1D 85.780 218 8 11 486 683 229065054 229065268 5.730000e-50 209.0
5 TraesCS1A01G164600 chr1B 92.750 2607 113 21 2999 5562 328437956 328440529 0.000000e+00 3698.0
6 TraesCS1A01G164600 chr1B 93.202 2133 84 33 630 2726 328435852 328437959 0.000000e+00 3079.0
7 TraesCS1A01G164600 chr1B 83.136 338 13 11 3 339 328434789 328435083 9.320000e-68 268.0
8 TraesCS1A01G164600 chr5A 98.227 282 5 0 2721 3002 34705275 34705556 1.410000e-135 494.0
9 TraesCS1A01G164600 chr3A 98.221 281 5 0 2722 3002 22785519 22785799 5.080000e-135 492.0
10 TraesCS1A01G164600 chr3A 97.241 290 7 1 2724 3012 82479734 82480023 1.830000e-134 490.0
11 TraesCS1A01G164600 chr2B 98.221 281 5 0 2723 3003 90445058 90444778 5.080000e-135 492.0
12 TraesCS1A01G164600 chr2B 96.296 297 9 2 2705 3000 81318773 81319068 2.360000e-133 486.0
13 TraesCS1A01G164600 chr2B 97.213 287 7 1 2720 3006 86540586 86540871 8.500000e-133 484.0
14 TraesCS1A01G164600 chr3B 97.880 283 6 0 2722 3004 803669525 803669243 1.830000e-134 490.0
15 TraesCS1A01G164600 chr7B 97.213 287 6 2 2720 3006 491171084 491171368 8.500000e-133 484.0
16 TraesCS1A01G164600 chr7B 95.050 303 12 3 2712 3014 710440870 710441169 1.840000e-129 473.0
17 TraesCS1A01G164600 chr7B 88.608 79 6 3 5400 5477 747404209 747404285 6.020000e-15 93.5
18 TraesCS1A01G164600 chrUn 90.789 76 4 2 5400 5473 376474643 376474569 1.290000e-16 99.0
19 TraesCS1A01G164600 chrUn 88.889 81 6 3 5400 5477 29985395 29985475 4.660000e-16 97.1
20 TraesCS1A01G164600 chr4B 93.846 65 3 1 5399 5463 623764165 623764228 4.660000e-16 97.1
21 TraesCS1A01G164600 chr6B 90.411 73 4 3 5407 5479 139829827 139829758 6.020000e-15 93.5
22 TraesCS1A01G164600 chr5B 85.870 92 7 3 5400 5486 158819932 158820022 6.020000e-15 93.5
23 TraesCS1A01G164600 chr6D 85.714 84 7 4 5393 5473 105134683 105134764 3.620000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G164600 chr1A 297376107 297381752 5645 False 10427.000000 10427 100.000 1 5646 1 chr1A.!!$F1 5645
1 TraesCS1A01G164600 chr1D 229064575 229070015 5440 False 1808.500000 3921 89.841 3 5646 4 chr1D.!!$F1 5643
2 TraesCS1A01G164600 chr1B 328434789 328440529 5740 False 2348.333333 3698 89.696 3 5562 3 chr1B.!!$F1 5559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 1411 0.032615 TCTCCTTCTCCTGCTCTCCC 60.033 60.0 0.0 0.0 0.0 4.30 F
2744 3327 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.0 0.0 0.0 0.0 3.85 F
3000 3583 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.0 0.0 0.0 0.0 3.93 F
3815 4411 0.871057 CACACACACACACACACACA 59.129 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 3357 1.693062 TGCCACATCACCAATTTTGCT 59.307 42.857 0.0 0.0 0.00 3.91 R
4266 4864 0.765510 AAGGAAAAGCAGGGTCGAGT 59.234 50.000 0.0 0.0 0.00 4.18 R
4269 4867 1.172180 TGCAAGGAAAAGCAGGGTCG 61.172 55.000 0.0 0.0 35.51 4.79 R
5584 6230 0.036010 GCTAGAAGCCCAACTGAGCA 60.036 55.000 0.0 0.0 34.48 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.423154 GCGTGGCTTTCCGTCCTG 61.423 66.667 0.00 0.00 34.14 3.86
55 56 7.781548 TTCCGTCCTGTATCTTTATTTTAGC 57.218 36.000 0.00 0.00 0.00 3.09
98 99 8.189119 TCTATACAACATTTTTCTTTTGCCCT 57.811 30.769 0.00 0.00 0.00 5.19
99 100 8.303876 TCTATACAACATTTTTCTTTTGCCCTC 58.696 33.333 0.00 0.00 0.00 4.30
100 101 5.096443 ACAACATTTTTCTTTTGCCCTCA 57.904 34.783 0.00 0.00 0.00 3.86
101 102 5.495640 ACAACATTTTTCTTTTGCCCTCAA 58.504 33.333 0.00 0.00 0.00 3.02
102 103 5.942826 ACAACATTTTTCTTTTGCCCTCAAA 59.057 32.000 0.00 0.00 40.17 2.69
103 104 6.432472 ACAACATTTTTCTTTTGCCCTCAAAA 59.568 30.769 3.60 3.60 46.51 2.44
168 170 0.974383 AGGGTTCCTTGTGGAGTACG 59.026 55.000 0.00 0.00 44.24 3.67
169 171 0.683412 GGGTTCCTTGTGGAGTACGT 59.317 55.000 0.00 0.00 44.24 3.57
170 172 1.895131 GGGTTCCTTGTGGAGTACGTA 59.105 52.381 0.00 0.00 44.24 3.57
171 173 2.353109 GGGTTCCTTGTGGAGTACGTAC 60.353 54.545 18.10 18.10 44.24 3.67
172 174 2.560105 GGTTCCTTGTGGAGTACGTACT 59.440 50.000 27.71 27.71 44.24 2.73
173 175 3.758554 GGTTCCTTGTGGAGTACGTACTA 59.241 47.826 27.44 11.15 44.24 1.82
174 176 4.400567 GGTTCCTTGTGGAGTACGTACTAT 59.599 45.833 27.44 7.76 44.24 2.12
175 177 5.590259 GGTTCCTTGTGGAGTACGTACTATA 59.410 44.000 27.44 16.44 44.24 1.31
176 178 6.095440 GGTTCCTTGTGGAGTACGTACTATAA 59.905 42.308 27.44 16.00 44.24 0.98
214 216 1.866925 GTGGCTTTGGCTACGTGAC 59.133 57.895 0.00 0.00 39.93 3.67
215 217 1.302192 TGGCTTTGGCTACGTGACC 60.302 57.895 0.00 0.00 38.73 4.02
216 218 2.388232 GGCTTTGGCTACGTGACCG 61.388 63.158 0.00 0.00 38.73 4.79
217 219 1.373748 GCTTTGGCTACGTGACCGA 60.374 57.895 0.00 0.00 35.08 4.69
284 286 5.722021 TTTAACTGAAGGGAAAATCCAGC 57.278 39.130 0.00 0.00 38.64 4.85
339 369 2.174349 CGCCAGCGCTTCACTTTC 59.826 61.111 7.50 0.00 0.00 2.62
342 372 0.661483 GCCAGCGCTTCACTTTCAAC 60.661 55.000 7.50 0.00 0.00 3.18
346 381 0.110644 GCGCTTCACTTTCAACGGAG 60.111 55.000 0.00 0.00 0.00 4.63
361 396 7.591006 TTCAACGGAGTATTTCACAATCTAC 57.409 36.000 0.00 0.00 45.00 2.59
362 397 6.931838 TCAACGGAGTATTTCACAATCTACT 58.068 36.000 0.00 0.00 45.00 2.57
368 403 9.400638 CGGAGTATTTCACAATCTACTTATCTC 57.599 37.037 0.00 0.00 0.00 2.75
425 489 2.035832 CACGGTTTGCCATTTTCCTCTT 59.964 45.455 0.00 0.00 34.09 2.85
533 642 3.148279 CCGGGTCGGCTAAGAGCT 61.148 66.667 0.00 0.00 41.17 4.09
605 714 4.304432 GGGGGATGAGGAGAGACC 57.696 66.667 0.00 0.00 39.35 3.85
607 716 1.230497 GGGGATGAGGAGAGACCGA 59.770 63.158 0.00 0.00 44.74 4.69
608 717 0.825840 GGGGATGAGGAGAGACCGAG 60.826 65.000 0.00 0.00 44.74 4.63
609 718 0.183971 GGGATGAGGAGAGACCGAGA 59.816 60.000 0.00 0.00 44.74 4.04
610 719 1.314730 GGATGAGGAGAGACCGAGAC 58.685 60.000 0.00 0.00 44.74 3.36
665 1196 2.261671 GCCAACGCGAGGAGAGAA 59.738 61.111 22.84 0.00 0.00 2.87
666 1197 1.807573 GCCAACGCGAGGAGAGAAG 60.808 63.158 22.84 0.00 0.00 2.85
667 1198 1.883732 CCAACGCGAGGAGAGAAGA 59.116 57.895 15.93 0.00 0.00 2.87
668 1199 0.179150 CCAACGCGAGGAGAGAAGAG 60.179 60.000 15.93 0.00 0.00 2.85
669 1200 0.805614 CAACGCGAGGAGAGAAGAGA 59.194 55.000 15.93 0.00 0.00 3.10
811 1346 1.454663 GCCAATCCTTCTCCCTGCC 60.455 63.158 0.00 0.00 0.00 4.85
812 1347 1.931007 GCCAATCCTTCTCCCTGCCT 61.931 60.000 0.00 0.00 0.00 4.75
813 1348 1.511613 CCAATCCTTCTCCCTGCCTA 58.488 55.000 0.00 0.00 0.00 3.93
814 1349 2.061061 CCAATCCTTCTCCCTGCCTAT 58.939 52.381 0.00 0.00 0.00 2.57
862 1397 0.910088 CCCCTTCGGGTTCTTCTCCT 60.910 60.000 0.00 0.00 45.50 3.69
868 1403 1.077334 TCGGGTTCTTCTCCTTCTCCT 59.923 52.381 0.00 0.00 0.00 3.69
869 1404 1.205893 CGGGTTCTTCTCCTTCTCCTG 59.794 57.143 0.00 0.00 0.00 3.86
876 1411 0.032615 TCTCCTTCTCCTGCTCTCCC 60.033 60.000 0.00 0.00 0.00 4.30
884 1419 2.422231 CCTGCTCTCCCACCTCTCG 61.422 68.421 0.00 0.00 0.00 4.04
906 1441 4.840005 CGGCCGCTTCCTCTTCCC 62.840 72.222 14.67 0.00 0.00 3.97
962 1497 1.676635 CGTAGGAGGGTCGTGTGGA 60.677 63.158 0.00 0.00 0.00 4.02
963 1498 1.888736 GTAGGAGGGTCGTGTGGAC 59.111 63.158 0.00 0.00 45.31 4.02
1170 1734 2.807044 GGTACGATTCTCGGGAGTTTC 58.193 52.381 1.29 0.00 45.59 2.78
1194 1758 2.280186 CGCCATTACTCCTCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
1213 1777 4.194720 ATCCGCTCGCGTCACCTC 62.195 66.667 5.77 0.00 37.81 3.85
1252 1826 1.638467 CGCTGAATTACTGCTCGCC 59.362 57.895 0.00 0.00 40.49 5.54
1261 1835 2.867333 TACTGCTCGCCGCTTCTTCG 62.867 60.000 0.00 0.00 40.11 3.79
1295 1869 7.173218 ACCGGATATGCTGAATAATTACAACTG 59.827 37.037 9.46 0.00 0.00 3.16
1297 1871 7.017645 GGATATGCTGAATAATTACAACTGCG 58.982 38.462 0.00 0.00 0.00 5.18
1299 1873 5.469373 TGCTGAATAATTACAACTGCGAG 57.531 39.130 0.00 0.00 0.00 5.03
1304 1878 7.434307 GCTGAATAATTACAACTGCGAGTACTA 59.566 37.037 0.00 0.00 0.00 1.82
1396 1970 3.791586 GCTGTGCCTCCCTCCCTC 61.792 72.222 0.00 0.00 0.00 4.30
1492 2066 2.328099 CCCGCTGCTCAACTGTTCC 61.328 63.158 0.00 0.00 0.00 3.62
1523 2097 2.303549 CTGCCCTTCAGTCCTAGGCG 62.304 65.000 2.96 0.00 46.92 5.52
1530 2104 4.075793 AGTCCTAGGCGGGCAGGA 62.076 66.667 15.31 15.31 40.99 3.86
1739 2313 2.046892 CTGCACGGAGGGGACAAG 60.047 66.667 0.00 0.00 0.00 3.16
1799 2373 4.631813 CAGCTATACACCAACAAAGTCCTC 59.368 45.833 0.00 0.00 0.00 3.71
1824 2398 0.326264 ATCCAGGTCTGCACCAAGAC 59.674 55.000 0.00 0.00 46.68 3.01
1881 2455 2.738587 TGTGGGCTGAACCAGTTTTA 57.261 45.000 0.00 0.00 42.20 1.52
2009 2584 1.246649 TTAACTGCGACGTGGTAGGA 58.753 50.000 18.86 4.74 0.00 2.94
2027 2602 3.319198 GGGAACAGGAGGCGACCA 61.319 66.667 6.55 0.00 0.00 4.02
2166 2741 7.603651 TCTCTATTCTTAGCTCTTTGTTTCGT 58.396 34.615 0.00 0.00 0.00 3.85
2346 2921 7.246674 TCACACAACATAAGAGTTTCTTCAC 57.753 36.000 0.00 0.00 37.89 3.18
2406 2981 6.749118 CCTTGCTTGTAATTCTAGATTGCAAC 59.251 38.462 0.00 0.00 34.77 4.17
2409 2984 6.030228 GCTTGTAATTCTAGATTGCAACCAC 58.970 40.000 0.00 0.00 31.97 4.16
2431 3014 3.466836 TGGTGCTCAACTTGTAGTTCTG 58.533 45.455 0.00 0.00 36.03 3.02
2441 3024 8.589335 TCAACTTGTAGTTCTGTAGTGAATTC 57.411 34.615 0.00 0.00 36.03 2.17
2493 3076 4.057432 GCTCTCATCATTTCTGTCTAGGC 58.943 47.826 0.00 0.00 0.00 3.93
2528 3111 6.263168 TGTTTCTCTGTTCAGAAATCCTTTCC 59.737 38.462 4.09 0.00 42.88 3.13
2543 3126 5.118729 TCCTTTCCCGGCTATTCATTTTA 57.881 39.130 0.00 0.00 0.00 1.52
2726 3309 4.452114 TGCTGTTGCATGTAAGACACTAAG 59.548 41.667 0.00 0.00 45.31 2.18
2727 3310 4.142816 GCTGTTGCATGTAAGACACTAAGG 60.143 45.833 0.00 0.00 39.41 2.69
2728 3311 3.751175 TGTTGCATGTAAGACACTAAGGC 59.249 43.478 0.00 0.00 0.00 4.35
2729 3312 3.981071 TGCATGTAAGACACTAAGGCT 57.019 42.857 0.00 0.00 36.92 4.58
2730 3313 3.599343 TGCATGTAAGACACTAAGGCTG 58.401 45.455 0.00 0.00 34.00 4.85
2731 3314 2.939103 GCATGTAAGACACTAAGGCTGG 59.061 50.000 0.00 0.00 34.00 4.85
2732 3315 3.619979 GCATGTAAGACACTAAGGCTGGT 60.620 47.826 0.00 0.00 34.00 4.00
2733 3316 3.955650 TGTAAGACACTAAGGCTGGTC 57.044 47.619 0.00 0.00 34.00 4.02
2734 3317 3.236047 TGTAAGACACTAAGGCTGGTCA 58.764 45.455 10.25 0.00 34.00 4.02
2735 3318 3.838317 TGTAAGACACTAAGGCTGGTCAT 59.162 43.478 10.25 2.97 34.00 3.06
2736 3319 5.020795 TGTAAGACACTAAGGCTGGTCATA 58.979 41.667 10.25 2.21 34.00 2.15
2737 3320 4.744795 AAGACACTAAGGCTGGTCATAG 57.255 45.455 10.25 1.15 34.00 2.23
2738 3321 3.714144 AGACACTAAGGCTGGTCATAGT 58.286 45.455 10.25 1.71 30.74 2.12
2739 3322 3.449018 AGACACTAAGGCTGGTCATAGTG 59.551 47.826 17.55 17.55 46.69 2.74
2740 3323 2.501723 ACACTAAGGCTGGTCATAGTGG 59.498 50.000 21.24 8.71 45.97 4.00
2741 3324 2.119495 ACTAAGGCTGGTCATAGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
2742 3325 2.292918 ACTAAGGCTGGTCATAGTGGGA 60.293 50.000 0.00 0.00 0.00 4.37
2743 3326 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
2744 3327 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
2745 3328 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
2746 3329 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2747 3330 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2748 3331 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
2749 3332 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
2750 3333 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
2751 3334 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
2752 3335 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
2753 3336 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
2754 3337 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
2755 3338 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
2756 3339 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
2757 3340 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
2758 3341 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
2759 3342 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
2760 3343 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
2761 3344 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
2762 3345 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
2763 3346 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
2764 3347 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
2765 3348 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
2767 3350 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
2768 3351 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
2769 3352 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
2770 3353 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
2771 3354 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
2772 3355 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
2773 3356 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
2774 3357 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
2775 3358 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
2776 3359 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
2777 3360 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
2778 3361 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
2779 3362 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
2780 3363 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
2781 3364 6.720112 ACATAGATGCCACATAAGCAAAAT 57.280 33.333 0.00 0.00 44.83 1.82
2782 3365 7.116075 ACATAGATGCCACATAAGCAAAATT 57.884 32.000 0.00 0.00 44.83 1.82
2783 3366 6.982141 ACATAGATGCCACATAAGCAAAATTG 59.018 34.615 0.00 0.00 44.83 2.32
2784 3367 4.761975 AGATGCCACATAAGCAAAATTGG 58.238 39.130 0.00 0.00 44.83 3.16
2785 3368 4.223477 AGATGCCACATAAGCAAAATTGGT 59.777 37.500 0.00 0.00 44.83 3.67
2786 3369 3.661944 TGCCACATAAGCAAAATTGGTG 58.338 40.909 0.00 0.00 39.13 4.17
2787 3370 3.323115 TGCCACATAAGCAAAATTGGTGA 59.677 39.130 0.00 0.00 39.13 4.02
2788 3371 4.020396 TGCCACATAAGCAAAATTGGTGAT 60.020 37.500 0.00 0.00 39.13 3.06
2793 3376 2.460757 AGCAAAATTGGTGATGTGGC 57.539 45.000 0.00 0.00 37.53 5.01
2794 3377 1.693062 AGCAAAATTGGTGATGTGGCA 59.307 42.857 0.00 0.00 37.53 4.92
2795 3378 2.104451 AGCAAAATTGGTGATGTGGCAA 59.896 40.909 0.00 0.00 37.53 4.52
2796 3379 2.481185 GCAAAATTGGTGATGTGGCAAG 59.519 45.455 0.00 0.00 0.00 4.01
2797 3380 3.731089 CAAAATTGGTGATGTGGCAAGT 58.269 40.909 0.00 0.00 0.00 3.16
2798 3381 4.798924 GCAAAATTGGTGATGTGGCAAGTA 60.799 41.667 0.00 0.00 0.00 2.24
2799 3382 4.789012 AAATTGGTGATGTGGCAAGTAG 57.211 40.909 0.00 0.00 0.00 2.57
2800 3383 2.949177 TTGGTGATGTGGCAAGTAGT 57.051 45.000 0.00 0.00 0.00 2.73
2801 3384 2.949177 TGGTGATGTGGCAAGTAGTT 57.051 45.000 0.00 0.00 0.00 2.24
2802 3385 4.359434 TTGGTGATGTGGCAAGTAGTTA 57.641 40.909 0.00 0.00 0.00 2.24
2803 3386 4.359434 TGGTGATGTGGCAAGTAGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
2804 3387 4.917385 TGGTGATGTGGCAAGTAGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
2805 3388 4.699735 TGGTGATGTGGCAAGTAGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
2806 3389 4.941263 GGTGATGTGGCAAGTAGTTAATGA 59.059 41.667 0.00 0.00 0.00 2.57
2807 3390 5.065218 GGTGATGTGGCAAGTAGTTAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
2808 3391 5.065218 GTGATGTGGCAAGTAGTTAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
2809 3392 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2810 3393 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2811 3394 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
2812 3395 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
2813 3396 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
2814 3397 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2815 3398 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
2816 3399 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
2817 3400 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
2818 3401 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
2819 3402 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
2820 3403 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
2821 3404 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
2822 3405 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
2823 3406 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
2824 3407 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
2825 3408 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
2826 3409 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
2827 3410 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
2828 3411 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
2829 3412 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
2830 3413 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
2831 3414 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
2832 3415 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
2833 3416 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
2853 3436 9.440773 ACATAATATGTTACCATCACATAGCAG 57.559 33.333 0.00 0.00 41.63 4.24
2854 3437 9.440773 CATAATATGTTACCATCACATAGCAGT 57.559 33.333 0.00 0.00 39.83 4.40
2856 3439 8.752005 AATATGTTACCATCACATAGCAGTTT 57.248 30.769 0.00 0.00 39.83 2.66
2857 3440 6.683974 ATGTTACCATCACATAGCAGTTTC 57.316 37.500 0.00 0.00 32.88 2.78
2858 3441 4.941263 TGTTACCATCACATAGCAGTTTCC 59.059 41.667 0.00 0.00 0.00 3.13
2859 3442 3.719268 ACCATCACATAGCAGTTTCCA 57.281 42.857 0.00 0.00 0.00 3.53
2860 3443 4.032960 ACCATCACATAGCAGTTTCCAA 57.967 40.909 0.00 0.00 0.00 3.53
2861 3444 4.603131 ACCATCACATAGCAGTTTCCAAT 58.397 39.130 0.00 0.00 0.00 3.16
2862 3445 4.400251 ACCATCACATAGCAGTTTCCAATG 59.600 41.667 0.00 0.00 0.00 2.82
2863 3446 4.357142 CATCACATAGCAGTTTCCAATGC 58.643 43.478 0.00 0.00 42.87 3.56
2864 3447 3.419943 TCACATAGCAGTTTCCAATGCA 58.580 40.909 0.00 0.00 45.01 3.96
2865 3448 4.018490 TCACATAGCAGTTTCCAATGCAT 58.982 39.130 0.00 0.00 45.01 3.96
2866 3449 5.192176 TCACATAGCAGTTTCCAATGCATA 58.808 37.500 0.00 0.00 45.01 3.14
2867 3450 5.651576 TCACATAGCAGTTTCCAATGCATAA 59.348 36.000 0.00 0.00 45.01 1.90
2868 3451 6.321945 TCACATAGCAGTTTCCAATGCATAAT 59.678 34.615 0.00 0.00 45.01 1.28
2869 3452 6.419710 CACATAGCAGTTTCCAATGCATAATG 59.580 38.462 0.00 0.00 45.01 1.90
2870 3453 6.321945 ACATAGCAGTTTCCAATGCATAATGA 59.678 34.615 0.00 0.00 45.01 2.57
2871 3454 5.258456 AGCAGTTTCCAATGCATAATGAG 57.742 39.130 0.00 0.00 45.01 2.90
2872 3455 4.708421 AGCAGTTTCCAATGCATAATGAGT 59.292 37.500 0.00 0.00 45.01 3.41
2873 3456 5.039333 GCAGTTTCCAATGCATAATGAGTC 58.961 41.667 0.00 0.00 42.11 3.36
2874 3457 5.163581 GCAGTTTCCAATGCATAATGAGTCT 60.164 40.000 0.00 0.00 42.11 3.24
2875 3458 6.038603 GCAGTTTCCAATGCATAATGAGTCTA 59.961 38.462 0.00 0.00 42.11 2.59
2876 3459 7.412853 CAGTTTCCAATGCATAATGAGTCTAC 58.587 38.462 0.00 0.00 0.00 2.59
2877 3460 7.066163 CAGTTTCCAATGCATAATGAGTCTACA 59.934 37.037 0.00 0.00 0.00 2.74
2878 3461 7.611467 AGTTTCCAATGCATAATGAGTCTACAA 59.389 33.333 0.00 0.00 0.00 2.41
2879 3462 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
2880 3463 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
2881 3464 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
2882 3465 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
2883 3466 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
2916 3499 6.614694 ACAACTATGTTACCACACCTATGA 57.385 37.500 0.00 0.00 35.91 2.15
2917 3500 6.403878 ACAACTATGTTACCACACCTATGAC 58.596 40.000 0.00 0.00 35.91 3.06
2918 3501 6.014070 ACAACTATGTTACCACACCTATGACA 60.014 38.462 0.00 0.00 35.91 3.58
2919 3502 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
2920 3503 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
2921 3504 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
2922 3505 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
2923 3506 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
2924 3507 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2925 3508 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
2926 3509 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
2927 3510 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
2928 3511 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
2929 3512 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
2930 3513 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
2931 3514 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
2932 3515 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
2933 3516 6.042093 CACCTATGACACTACCCACTATGAAT 59.958 42.308 0.00 0.00 0.00 2.57
2934 3517 6.042093 ACCTATGACACTACCCACTATGAATG 59.958 42.308 0.00 0.00 0.00 2.67
2935 3518 5.957771 ATGACACTACCCACTATGAATGT 57.042 39.130 0.00 0.00 0.00 2.71
2936 3519 7.232737 CCTATGACACTACCCACTATGAATGTA 59.767 40.741 0.00 0.00 0.00 2.29
2937 3520 6.465439 TGACACTACCCACTATGAATGTAG 57.535 41.667 0.00 0.00 36.00 2.74
2938 3521 5.955959 TGACACTACCCACTATGAATGTAGT 59.044 40.000 0.00 0.00 41.96 2.73
2939 3522 7.120716 TGACACTACCCACTATGAATGTAGTA 58.879 38.462 0.00 0.00 39.92 1.82
2940 3523 7.616542 TGACACTACCCACTATGAATGTAGTAA 59.383 37.037 0.00 0.00 39.92 2.24
2941 3524 7.779073 ACACTACCCACTATGAATGTAGTAAC 58.221 38.462 0.00 0.00 39.92 2.50
2942 3525 7.398047 ACACTACCCACTATGAATGTAGTAACA 59.602 37.037 0.00 0.00 39.92 2.41
2944 3527 9.650714 ACTACCCACTATGAATGTAGTAACATA 57.349 33.333 0.00 0.00 45.79 2.29
2946 3529 8.777578 ACCCACTATGAATGTAGTAACATAGA 57.222 34.615 16.37 0.00 45.79 1.98
2947 3530 8.639761 ACCCACTATGAATGTAGTAACATAGAC 58.360 37.037 16.37 0.00 45.79 2.59
2948 3531 8.861086 CCCACTATGAATGTAGTAACATAGACT 58.139 37.037 16.37 0.00 45.79 3.24
2984 3567 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
2985 3568 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
2986 3569 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
2987 3570 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
2988 3571 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
2989 3572 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
2990 3573 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
2991 3574 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
2992 3575 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
2993 3576 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
2994 3577 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
2995 3578 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
2996 3579 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
2997 3580 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
2998 3581 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
2999 3582 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
3000 3583 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
3001 3584 1.009060 TCCCCACTATGACCAGCCTAA 59.991 52.381 0.00 0.00 0.00 2.69
3050 3633 3.736213 CACAAGAACGTCATCATTTCCG 58.264 45.455 0.00 0.00 0.00 4.30
3116 3699 7.947332 TGCTAGTCACTAATCATCCTAGATTCT 59.053 37.037 0.00 0.00 38.97 2.40
3125 3708 3.326006 TCATCCTAGATTCTGGGTGATGC 59.674 47.826 15.00 0.00 33.63 3.91
3149 3732 5.629020 CCCATTTGTGTTGTTTAGATGTTCG 59.371 40.000 0.00 0.00 0.00 3.95
3152 3735 4.203950 TGTGTTGTTTAGATGTTCGTGC 57.796 40.909 0.00 0.00 0.00 5.34
3176 3765 5.431765 AGACACACTGAGTCAAATTTCACT 58.568 37.500 0.00 0.00 38.46 3.41
3192 3781 5.627499 TTTCACTTTGCACTATGTGGATC 57.373 39.130 5.00 0.00 33.22 3.36
3195 3784 5.316167 TCACTTTGCACTATGTGGATCTTT 58.684 37.500 5.00 0.00 33.22 2.52
3223 3812 7.570132 TCCTGATTTCGATTAGATTGGGTTAA 58.430 34.615 0.00 0.00 0.00 2.01
3309 3898 7.335422 CCACTCTTATAAACATGCACTCTTTCT 59.665 37.037 0.00 0.00 0.00 2.52
3318 3907 4.340381 ACATGCACTCTTTCTTTGCTTCTT 59.660 37.500 0.00 0.00 37.16 2.52
3477 4066 3.616821 GTCACAAGCGCAGAATATGTGTA 59.383 43.478 11.47 3.06 41.52 2.90
3576 4166 1.478654 GCCCTTGGTGGAAGAAACTCA 60.479 52.381 0.00 0.00 38.35 3.41
3617 4207 1.739067 ATTACCTTGCTTGAGACCGC 58.261 50.000 0.00 0.00 0.00 5.68
3774 4364 4.916983 TTGCTGCCAATTGGTATGATAC 57.083 40.909 25.19 7.64 37.57 2.24
3814 4410 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3815 4411 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3816 4412 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3817 4413 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3818 4414 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3819 4415 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3820 4416 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3821 4417 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3822 4418 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3823 4419 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3824 4420 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3825 4421 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3826 4422 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3827 4423 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3828 4424 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3829 4425 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3866 4462 3.807071 GCTTAGCTTCCAAGAGTATGAGC 59.193 47.826 0.00 0.00 0.00 4.26
3894 4490 3.011566 TCAAGGGTTTGTTCAGCTTGA 57.988 42.857 0.00 0.00 35.73 3.02
3919 4515 4.853924 TTTGCTTCCAAACCTTCATCTC 57.146 40.909 0.00 0.00 36.09 2.75
4013 4609 4.141251 AGCAGTTTCTTTCCCCAGTTAAGA 60.141 41.667 0.00 0.00 0.00 2.10
4155 4753 6.552350 AGGTACTTATTATACATCGGTGGTGT 59.448 38.462 0.00 0.00 27.25 4.16
4266 4864 6.323739 AGTCTAAACCAAGCCAATTCTTTGAA 59.676 34.615 0.00 0.00 34.60 2.69
4269 4867 4.590850 ACCAAGCCAATTCTTTGAACTC 57.409 40.909 0.00 0.00 34.60 3.01
4282 4880 1.878953 TGAACTCGACCCTGCTTTTC 58.121 50.000 0.00 0.00 0.00 2.29
4288 4886 1.172180 CGACCCTGCTTTTCCTTGCA 61.172 55.000 0.00 0.00 37.63 4.08
4424 5022 1.341531 CACCGGAGACCATGACCTATC 59.658 57.143 9.46 0.00 0.00 2.08
4468 5066 0.478072 ATGACCAGAAGGCCAACACA 59.522 50.000 5.01 0.00 39.06 3.72
4680 5295 2.094390 CCCCGTAGACTTGAAATCGTCA 60.094 50.000 0.00 0.00 32.68 4.35
4910 5525 1.891811 TGTGGTTGGGTGCATATTGTG 59.108 47.619 0.00 0.00 0.00 3.33
4913 5528 0.175531 GTTGGGTGCATATTGTGGCC 59.824 55.000 0.00 0.00 0.00 5.36
5137 5756 9.086336 TGACAACTTCATTTTCTTTTAAAGCAG 57.914 29.630 0.00 0.00 0.00 4.24
5155 5774 6.942532 AAGCAGTTGTATCAAAAAGTGAGA 57.057 33.333 0.00 0.00 40.43 3.27
5232 5871 7.281774 AGACACAAATTCATTAGTGGCATCTAG 59.718 37.037 0.00 0.00 42.40 2.43
5233 5872 6.886459 ACACAAATTCATTAGTGGCATCTAGT 59.114 34.615 0.00 0.00 36.35 2.57
5234 5873 8.046708 ACACAAATTCATTAGTGGCATCTAGTA 58.953 33.333 0.00 0.00 36.35 1.82
5311 5950 6.757947 ACATGCTATTATCCAACACAAAATGC 59.242 34.615 0.00 0.00 0.00 3.56
5372 6011 3.403038 AGCTGGTATGTTGTGACAGTTC 58.597 45.455 0.00 0.00 39.58 3.01
5377 6016 4.518590 TGGTATGTTGTGACAGTTCCATTG 59.481 41.667 0.00 0.00 39.58 2.82
5378 6017 4.759693 GGTATGTTGTGACAGTTCCATTGA 59.240 41.667 0.00 0.00 39.58 2.57
5379 6018 5.415701 GGTATGTTGTGACAGTTCCATTGAT 59.584 40.000 0.00 0.00 39.58 2.57
5380 6019 4.834357 TGTTGTGACAGTTCCATTGATG 57.166 40.909 0.00 0.00 0.00 3.07
5381 6020 4.459330 TGTTGTGACAGTTCCATTGATGA 58.541 39.130 0.00 0.00 0.00 2.92
5432 6077 4.382386 ACCTACCAATAAAGCAAGGTGT 57.618 40.909 0.00 0.00 36.03 4.16
5524 6169 5.228945 AGTTGGTACTATCTGTTTGTGCT 57.771 39.130 0.00 0.00 31.21 4.40
5543 6188 4.723862 GTGCTACGTTGCATTAGATTTTCG 59.276 41.667 26.47 0.00 45.23 3.46
5572 6217 1.971505 CTTGACAGGGCCTCCGCATA 61.972 60.000 0.95 0.00 38.33 3.14
5580 6226 0.106894 GGCCTCCGCATAGCTACTTT 59.893 55.000 0.00 0.00 36.38 2.66
5584 6230 2.103263 CCTCCGCATAGCTACTTTCCTT 59.897 50.000 0.00 0.00 0.00 3.36
5596 6242 0.600057 CTTTCCTTGCTCAGTTGGGC 59.400 55.000 0.00 0.00 0.00 5.36
5601 6247 1.003580 CCTTGCTCAGTTGGGCTTCTA 59.996 52.381 5.47 0.00 0.00 2.10
5607 6253 0.393537 CAGTTGGGCTTCTAGCTGGG 60.394 60.000 0.00 0.00 41.99 4.45
5619 6265 0.767833 TAGCTGGGCCTGCATCCATA 60.768 55.000 32.94 16.09 31.95 2.74
5627 6273 2.961062 GGCCTGCATCCATACTCAAAAT 59.039 45.455 0.00 0.00 0.00 1.82
5631 6277 5.585390 CCTGCATCCATACTCAAAATTGTC 58.415 41.667 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.108329 ATACAGGACGGAAAGCCACG 60.108 55.000 0.00 0.00 0.00 4.94
40 41 8.385858 ACGGAAAGTTCGCTAAAATAAAGATAC 58.614 33.333 0.00 0.00 0.00 2.24
55 56 5.692613 ATAGATAGAGGACGGAAAGTTCG 57.307 43.478 0.00 0.00 32.14 3.95
102 103 8.655970 GCTCTACACACAAAAGAAAAATGTTTT 58.344 29.630 0.00 0.00 0.00 2.43
103 104 7.816995 TGCTCTACACACAAAAGAAAAATGTTT 59.183 29.630 0.00 0.00 0.00 2.83
123 124 8.898761 TCTCCGCAAAAATAAATAAATGCTCTA 58.101 29.630 0.00 0.00 0.00 2.43
168 170 7.634522 ACCGTTCAACTCGTCTATTATAGTAC 58.365 38.462 0.00 0.00 0.00 2.73
169 171 7.792374 ACCGTTCAACTCGTCTATTATAGTA 57.208 36.000 0.00 0.00 0.00 1.82
170 172 6.690194 ACCGTTCAACTCGTCTATTATAGT 57.310 37.500 0.00 0.00 0.00 2.12
171 173 6.356452 CGAACCGTTCAACTCGTCTATTATAG 59.644 42.308 11.74 0.00 0.00 1.31
172 174 6.183360 ACGAACCGTTCAACTCGTCTATTATA 60.183 38.462 11.74 0.00 40.29 0.98
173 175 5.032863 CGAACCGTTCAACTCGTCTATTAT 58.967 41.667 11.74 0.00 0.00 1.28
174 176 4.083324 ACGAACCGTTCAACTCGTCTATTA 60.083 41.667 11.74 0.00 40.29 0.98
175 177 3.240069 CGAACCGTTCAACTCGTCTATT 58.760 45.455 11.74 0.00 0.00 1.73
176 178 2.227388 ACGAACCGTTCAACTCGTCTAT 59.773 45.455 11.74 0.00 40.29 1.98
214 216 1.583967 GTCTCGTCACGCATCTCGG 60.584 63.158 0.00 0.00 43.86 4.63
215 217 1.930188 CGTCTCGTCACGCATCTCG 60.930 63.158 0.00 0.00 45.38 4.04
216 218 1.583967 CCGTCTCGTCACGCATCTC 60.584 63.158 0.00 0.00 38.52 2.75
217 219 2.485582 CCGTCTCGTCACGCATCT 59.514 61.111 0.00 0.00 38.52 2.90
270 272 0.786435 ACCTGGCTGGATTTTCCCTT 59.214 50.000 18.12 0.00 39.71 3.95
272 274 0.684479 GGACCTGGCTGGATTTTCCC 60.684 60.000 18.12 4.56 39.71 3.97
274 276 1.657751 GCGGACCTGGCTGGATTTTC 61.658 60.000 18.12 3.85 39.71 2.29
335 365 7.133891 AGATTGTGAAATACTCCGTTGAAAG 57.866 36.000 0.00 0.00 0.00 2.62
339 369 7.596749 AAGTAGATTGTGAAATACTCCGTTG 57.403 36.000 0.00 0.00 0.00 4.10
342 372 9.400638 GAGATAAGTAGATTGTGAAATACTCCG 57.599 37.037 0.00 0.00 0.00 4.63
368 403 8.436200 ACGTTTCGAAGAGATTTTATTTCAGAG 58.564 33.333 0.00 0.00 38.43 3.35
369 404 8.221100 CACGTTTCGAAGAGATTTTATTTCAGA 58.779 33.333 0.00 0.00 38.43 3.27
371 406 8.078959 TCACGTTTCGAAGAGATTTTATTTCA 57.921 30.769 0.00 0.00 38.43 2.69
372 407 9.543018 AATCACGTTTCGAAGAGATTTTATTTC 57.457 29.630 0.00 0.00 38.43 2.17
376 411 7.507304 GTGAATCACGTTTCGAAGAGATTTTA 58.493 34.615 10.06 3.21 38.43 1.52
438 504 1.091771 AATGCAGACTTGATCCGCGG 61.092 55.000 22.12 22.12 0.00 6.46
596 705 2.438795 GCGGTCTCGGTCTCTCCT 60.439 66.667 0.00 0.00 36.79 3.69
597 706 3.519930 GGCGGTCTCGGTCTCTCC 61.520 72.222 0.00 0.00 36.79 3.71
598 707 2.750637 TGGCGGTCTCGGTCTCTC 60.751 66.667 0.00 0.00 36.79 3.20
599 708 2.752238 CTGGCGGTCTCGGTCTCT 60.752 66.667 0.00 0.00 36.79 3.10
600 709 4.500116 GCTGGCGGTCTCGGTCTC 62.500 72.222 0.00 0.00 36.79 3.36
665 1196 0.319728 TTGCTTTGCGCTCTCTCTCT 59.680 50.000 9.73 0.00 40.11 3.10
666 1197 1.136113 GTTTGCTTTGCGCTCTCTCTC 60.136 52.381 9.73 0.00 40.11 3.20
667 1198 0.871057 GTTTGCTTTGCGCTCTCTCT 59.129 50.000 9.73 0.00 40.11 3.10
668 1199 0.110010 GGTTTGCTTTGCGCTCTCTC 60.110 55.000 9.73 0.00 40.11 3.20
669 1200 1.845809 CGGTTTGCTTTGCGCTCTCT 61.846 55.000 9.73 0.00 40.11 3.10
728 1260 1.068741 CTTTATTCGTCGGAGGGAGGG 59.931 57.143 0.00 0.00 0.00 4.30
731 1263 0.462789 GGCTTTATTCGTCGGAGGGA 59.537 55.000 0.00 0.00 0.00 4.20
773 1308 2.041405 GAGGGGGAGTGGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
774 1309 2.540910 AGAGGGGGAGTGGGAGGA 60.541 66.667 0.00 0.00 0.00 3.71
775 1310 2.041405 GAGAGGGGGAGTGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
852 1387 2.831526 AGAGCAGGAGAAGGAGAAGAAC 59.168 50.000 0.00 0.00 0.00 3.01
862 1397 0.616111 GAGGTGGGAGAGCAGGAGAA 60.616 60.000 0.00 0.00 0.00 2.87
868 1403 1.979155 CACGAGAGGTGGGAGAGCA 60.979 63.158 0.00 0.00 43.16 4.26
869 1404 2.888863 CACGAGAGGTGGGAGAGC 59.111 66.667 0.00 0.00 43.16 4.09
894 1429 2.687566 TCCCGGGGAAGAGGAAGC 60.688 66.667 23.50 0.00 0.00 3.86
940 1475 4.371417 ACGACCCTCCTACGGCCA 62.371 66.667 2.24 0.00 0.00 5.36
1144 1708 3.022914 GAGAATCGTACCGGCGCG 61.023 66.667 0.00 0.00 0.00 6.86
1170 1734 2.548920 GGAGGAGTAATGGCGAATCCTG 60.549 54.545 7.48 0.00 40.48 3.86
1213 1777 1.811266 CATGCCGTCGGAGGAACAG 60.811 63.158 17.49 0.00 0.00 3.16
1235 1809 1.638467 CGGCGAGCAGTAATTCAGC 59.362 57.895 0.00 0.00 0.00 4.26
1267 1841 5.411361 TGTAATTATTCAGCATATCCGGTGC 59.589 40.000 7.42 7.42 42.81 5.01
1386 1960 2.069430 GGCAAGAGGAGGGAGGGAG 61.069 68.421 0.00 0.00 0.00 4.30
1396 1970 1.688772 CATCCCAATCAGGCAAGAGG 58.311 55.000 0.00 0.00 35.39 3.69
1492 2066 5.998454 CTGAAGGGCAGTCATTAATACTG 57.002 43.478 15.23 15.23 45.80 2.74
1799 2373 2.876581 TGCAGACCTGGATGCATTG 58.123 52.632 21.56 0.00 46.97 2.82
1824 2398 5.291178 TGAAGTCAAAATCAAGCATGGTTG 58.709 37.500 27.73 27.73 27.92 3.77
1881 2455 2.298163 CAAAACTCCTGCAGGCAAAGAT 59.702 45.455 28.91 12.31 34.44 2.40
2009 2584 3.003763 GGTCGCCTCCTGTTCCCT 61.004 66.667 0.00 0.00 0.00 4.20
2027 2602 4.729868 AGAACTCAAAGTACAAATGGCCT 58.270 39.130 3.32 0.00 0.00 5.19
2081 2656 8.159447 TCATAGAAATTCACCTTATCCATGAGG 58.841 37.037 0.00 0.00 39.31 3.86
2119 2694 5.878116 AGATAGCACGACTAGGATAAGCTAG 59.122 44.000 10.45 0.00 36.66 3.42
2367 2942 5.264395 ACAAGCAAGGAAAATAGTATGGCT 58.736 37.500 0.00 0.00 0.00 4.75
2406 2981 2.146342 CTACAAGTTGAGCACCAGTGG 58.854 52.381 10.54 7.91 0.00 4.00
2409 2984 3.496130 CAGAACTACAAGTTGAGCACCAG 59.504 47.826 10.54 0.00 38.80 4.00
2431 3014 9.599322 CTGAACATAAACACTTGAATTCACTAC 57.401 33.333 7.89 0.00 0.00 2.73
2441 3024 5.977129 GGGTCAAACTGAACATAAACACTTG 59.023 40.000 0.00 0.00 35.30 3.16
2493 3076 4.270084 TGAACAGAGAAACAACGCTTACTG 59.730 41.667 0.00 0.00 0.00 2.74
2528 3111 6.483307 TCACAGAGAATAAAATGAATAGCCGG 59.517 38.462 0.00 0.00 0.00 6.13
2726 3309 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
2727 3310 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
2728 3311 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
2729 3312 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
2730 3313 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
2731 3314 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
2732 3315 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
2733 3316 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
2734 3317 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
2735 3318 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
2736 3319 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
2737 3320 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
2738 3321 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
2739 3322 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
2741 3324 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
2742 3325 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
2743 3326 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
2744 3327 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
2745 3328 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
2746 3329 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
2747 3330 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
2748 3331 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
2749 3332 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
2750 3333 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
2751 3334 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
2752 3335 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
2753 3336 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
2754 3337 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
2755 3338 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
2756 3339 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
2757 3340 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
2758 3341 6.720112 ATTTTGCTTATGTGGCATCTATGT 57.280 33.333 0.00 0.00 39.54 2.29
2759 3342 6.422701 CCAATTTTGCTTATGTGGCATCTATG 59.577 38.462 0.00 0.00 39.54 2.23
2760 3343 6.098695 ACCAATTTTGCTTATGTGGCATCTAT 59.901 34.615 0.00 0.00 39.54 1.98
2761 3344 5.421693 ACCAATTTTGCTTATGTGGCATCTA 59.578 36.000 0.00 0.00 39.54 1.98
2762 3345 4.223477 ACCAATTTTGCTTATGTGGCATCT 59.777 37.500 0.00 0.00 39.54 2.90
2763 3346 4.330620 CACCAATTTTGCTTATGTGGCATC 59.669 41.667 0.00 0.00 39.54 3.91
2764 3347 4.020396 TCACCAATTTTGCTTATGTGGCAT 60.020 37.500 0.00 0.00 39.54 4.40
2765 3348 3.323115 TCACCAATTTTGCTTATGTGGCA 59.677 39.130 0.00 0.00 37.97 4.92
2766 3349 3.924144 TCACCAATTTTGCTTATGTGGC 58.076 40.909 0.00 0.00 0.00 5.01
2767 3350 5.349270 CACATCACCAATTTTGCTTATGTGG 59.651 40.000 15.23 0.00 36.82 4.17
2768 3351 5.349270 CCACATCACCAATTTTGCTTATGTG 59.651 40.000 15.68 15.68 38.31 3.21
2769 3352 5.481105 CCACATCACCAATTTTGCTTATGT 58.519 37.500 0.00 0.00 0.00 2.29
2770 3353 4.330620 GCCACATCACCAATTTTGCTTATG 59.669 41.667 0.00 0.00 0.00 1.90
2771 3354 4.020396 TGCCACATCACCAATTTTGCTTAT 60.020 37.500 0.00 0.00 0.00 1.73
2772 3355 3.323115 TGCCACATCACCAATTTTGCTTA 59.677 39.130 0.00 0.00 0.00 3.09
2773 3356 2.104451 TGCCACATCACCAATTTTGCTT 59.896 40.909 0.00 0.00 0.00 3.91
2774 3357 1.693062 TGCCACATCACCAATTTTGCT 59.307 42.857 0.00 0.00 0.00 3.91
2775 3358 2.166821 TGCCACATCACCAATTTTGC 57.833 45.000 0.00 0.00 0.00 3.68
2776 3359 3.731089 ACTTGCCACATCACCAATTTTG 58.269 40.909 0.00 0.00 0.00 2.44
2777 3360 4.588528 ACTACTTGCCACATCACCAATTTT 59.411 37.500 0.00 0.00 0.00 1.82
2778 3361 4.151883 ACTACTTGCCACATCACCAATTT 58.848 39.130 0.00 0.00 0.00 1.82
2779 3362 3.766545 ACTACTTGCCACATCACCAATT 58.233 40.909 0.00 0.00 0.00 2.32
2780 3363 3.439857 ACTACTTGCCACATCACCAAT 57.560 42.857 0.00 0.00 0.00 3.16
2781 3364 2.949177 ACTACTTGCCACATCACCAA 57.051 45.000 0.00 0.00 0.00 3.67
2782 3365 2.949177 AACTACTTGCCACATCACCA 57.051 45.000 0.00 0.00 0.00 4.17
2783 3366 4.941263 TCATTAACTACTTGCCACATCACC 59.059 41.667 0.00 0.00 0.00 4.02
2784 3367 5.065218 CCTCATTAACTACTTGCCACATCAC 59.935 44.000 0.00 0.00 0.00 3.06
2785 3368 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
2786 3369 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
2787 3370 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
2788 3371 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
2789 3372 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
2790 3373 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
2791 3374 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
2792 3375 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
2793 3376 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
2794 3377 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
2795 3378 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
2796 3379 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
2797 3380 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
2798 3381 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
2799 3382 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
2800 3383 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
2801 3384 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
2802 3385 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
2803 3386 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
2804 3387 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
2805 3388 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
2806 3389 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
2807 3390 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
2836 3419 4.941263 TGGAAACTGCTATGTGATGGTAAC 59.059 41.667 0.00 0.00 0.00 2.50
2837 3420 5.172687 TGGAAACTGCTATGTGATGGTAA 57.827 39.130 0.00 0.00 0.00 2.85
2838 3421 4.835284 TGGAAACTGCTATGTGATGGTA 57.165 40.909 0.00 0.00 0.00 3.25
2839 3422 3.719268 TGGAAACTGCTATGTGATGGT 57.281 42.857 0.00 0.00 0.00 3.55
2840 3423 4.735578 GCATTGGAAACTGCTATGTGATGG 60.736 45.833 0.00 0.00 35.49 3.51
2841 3424 4.142337 TGCATTGGAAACTGCTATGTGATG 60.142 41.667 0.00 0.00 39.16 3.07
2842 3425 4.018490 TGCATTGGAAACTGCTATGTGAT 58.982 39.130 0.00 0.00 39.16 3.06
2843 3426 3.419943 TGCATTGGAAACTGCTATGTGA 58.580 40.909 0.00 0.00 39.16 3.58
2844 3427 3.853831 TGCATTGGAAACTGCTATGTG 57.146 42.857 0.00 0.00 39.16 3.21
2845 3428 6.321945 TCATTATGCATTGGAAACTGCTATGT 59.678 34.615 3.54 0.00 39.16 2.29
2846 3429 6.741109 TCATTATGCATTGGAAACTGCTATG 58.259 36.000 3.54 0.00 39.16 2.23
2847 3430 6.548622 ACTCATTATGCATTGGAAACTGCTAT 59.451 34.615 3.54 0.00 39.16 2.97
2848 3431 5.887598 ACTCATTATGCATTGGAAACTGCTA 59.112 36.000 3.54 0.00 39.16 3.49
2849 3432 4.708421 ACTCATTATGCATTGGAAACTGCT 59.292 37.500 3.54 0.00 39.16 4.24
2850 3433 5.002464 ACTCATTATGCATTGGAAACTGC 57.998 39.130 3.54 0.00 38.87 4.40
2851 3434 6.446781 AGACTCATTATGCATTGGAAACTG 57.553 37.500 3.54 0.00 0.00 3.16
2852 3435 7.112122 TGTAGACTCATTATGCATTGGAAACT 58.888 34.615 3.54 5.41 0.00 2.66
2853 3436 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
2854 3437 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
2855 3438 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
2856 3439 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
2857 3440 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
2901 3484 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
2902 3485 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
2903 3486 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
2904 3487 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
2905 3488 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
2906 3489 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
2907 3490 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
2908 3491 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
2909 3492 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
2910 3493 6.042093 ACATTCATAGTGGGTAGTGTCATAGG 59.958 42.308 0.00 0.00 0.00 2.57
2911 3494 7.055667 ACATTCATAGTGGGTAGTGTCATAG 57.944 40.000 0.00 0.00 0.00 2.23
2912 3495 7.783119 ACTACATTCATAGTGGGTAGTGTCATA 59.217 37.037 0.00 0.00 42.06 2.15
2913 3496 5.957771 ACATTCATAGTGGGTAGTGTCAT 57.042 39.130 0.00 0.00 0.00 3.06
2914 3497 5.955959 ACTACATTCATAGTGGGTAGTGTCA 59.044 40.000 0.00 0.00 42.06 3.58
2915 3498 6.466885 ACTACATTCATAGTGGGTAGTGTC 57.533 41.667 0.00 0.00 42.06 3.67
2916 3499 7.398047 TGTTACTACATTCATAGTGGGTAGTGT 59.602 37.037 11.76 0.00 43.12 3.55
2917 3500 7.778083 TGTTACTACATTCATAGTGGGTAGTG 58.222 38.462 11.76 0.00 43.12 2.74
2918 3501 7.966339 TGTTACTACATTCATAGTGGGTAGT 57.034 36.000 0.00 0.00 44.74 2.73
2920 3503 9.871175 TCTATGTTACTACATTCATAGTGGGTA 57.129 33.333 0.00 0.00 42.29 3.69
2921 3504 8.639761 GTCTATGTTACTACATTCATAGTGGGT 58.360 37.037 0.00 0.00 42.29 4.51
2922 3505 8.861086 AGTCTATGTTACTACATTCATAGTGGG 58.139 37.037 0.00 0.00 42.29 4.61
2958 3541 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
2959 3542 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
2960 3543 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
2961 3544 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
2962 3545 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
2963 3546 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
2964 3547 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
2965 3548 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
2966 3549 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
2967 3550 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
2968 3551 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
2969 3552 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
2970 3553 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
2971 3554 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
2972 3555 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
2973 3556 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
2974 3557 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
2975 3558 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
2976 3559 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2977 3560 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2978 3561 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2979 3562 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2980 3563 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2981 3564 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
2982 3565 1.141053 GTTAGGCTGGTCATAGTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
2983 3566 2.119495 AGTTAGGCTGGTCATAGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
2984 3567 4.038162 GTCTAGTTAGGCTGGTCATAGTGG 59.962 50.000 0.00 0.00 0.00 4.00
2985 3568 4.038162 GGTCTAGTTAGGCTGGTCATAGTG 59.962 50.000 0.00 0.00 0.00 2.74
2986 3569 4.216708 GGTCTAGTTAGGCTGGTCATAGT 58.783 47.826 0.00 0.00 0.00 2.12
2987 3570 4.215908 TGGTCTAGTTAGGCTGGTCATAG 58.784 47.826 0.00 0.00 0.00 2.23
2988 3571 4.215908 CTGGTCTAGTTAGGCTGGTCATA 58.784 47.826 0.00 0.00 0.00 2.15
2989 3572 3.034635 CTGGTCTAGTTAGGCTGGTCAT 58.965 50.000 0.00 0.00 0.00 3.06
2990 3573 2.225293 ACTGGTCTAGTTAGGCTGGTCA 60.225 50.000 0.00 0.00 35.67 4.02
2991 3574 2.458620 ACTGGTCTAGTTAGGCTGGTC 58.541 52.381 0.00 0.00 35.67 4.02
2992 3575 2.625282 ACTGGTCTAGTTAGGCTGGT 57.375 50.000 0.00 0.00 35.67 4.00
3001 3584 7.962995 TTAGAGATGATCAAACTGGTCTAGT 57.037 36.000 0.00 0.00 42.89 2.57
3125 3708 5.629020 CGAACATCTAAACAACACAAATGGG 59.371 40.000 0.00 0.00 0.00 4.00
3149 3732 1.939974 TTGACTCAGTGTGTCTGCAC 58.060 50.000 22.18 1.31 43.32 4.57
3152 3735 5.295292 AGTGAAATTTGACTCAGTGTGTCTG 59.705 40.000 22.18 0.00 44.85 3.51
3176 3765 5.415701 GGAGAAAAGATCCACATAGTGCAAA 59.584 40.000 0.00 0.00 36.79 3.68
3192 3781 8.341173 CCAATCTAATCGAAATCAGGAGAAAAG 58.659 37.037 0.00 0.00 0.00 2.27
3195 3784 6.126768 ACCCAATCTAATCGAAATCAGGAGAA 60.127 38.462 0.00 0.00 0.00 2.87
3223 3812 2.575279 AGTCATCCTCTTCCAAGCACAT 59.425 45.455 0.00 0.00 0.00 3.21
3262 3851 3.308832 GGTTGGGGAATGGAACTGTCATA 60.309 47.826 0.00 0.00 0.00 2.15
3309 3898 3.951037 TCACAGCTTGGTAAAGAAGCAAA 59.049 39.130 7.20 0.00 46.93 3.68
3318 3907 3.118038 AGTTCCAACTCACAGCTTGGTAA 60.118 43.478 0.00 0.00 38.50 2.85
3429 4018 0.870393 ACTTCTGCAGTGCACATTCG 59.130 50.000 21.04 4.10 32.83 3.34
3434 4023 1.391485 CGACATACTTCTGCAGTGCAC 59.609 52.381 15.37 9.40 35.97 4.57
3464 4053 6.017109 CCCCAAAGTACATACACATATTCTGC 60.017 42.308 0.00 0.00 0.00 4.26
3576 4166 9.899226 GTAATTGAGAAAGCTACAGTTCATTTT 57.101 29.630 0.00 0.00 0.00 1.82
3617 4207 6.483307 TGAACACTAGAAACCACTCAATCAAG 59.517 38.462 0.00 0.00 0.00 3.02
3755 4345 3.138304 TCGTATCATACCAATTGGCAGC 58.862 45.455 24.79 6.99 39.32 5.25
3814 4410 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
3815 4411 3.181486 TGTTTGTTTGTGTGTGTGTGTGT 60.181 39.130 0.00 0.00 0.00 3.72
3816 4412 3.375642 TGTTTGTTTGTGTGTGTGTGTG 58.624 40.909 0.00 0.00 0.00 3.82
3817 4413 3.717400 TGTTTGTTTGTGTGTGTGTGT 57.283 38.095 0.00 0.00 0.00 3.72
3818 4414 5.176406 TCAATTGTTTGTTTGTGTGTGTGTG 59.824 36.000 5.13 0.00 34.32 3.82
3819 4415 5.292765 TCAATTGTTTGTTTGTGTGTGTGT 58.707 33.333 5.13 0.00 34.32 3.72
3820 4416 5.835911 TCAATTGTTTGTTTGTGTGTGTG 57.164 34.783 5.13 0.00 34.32 3.82
3821 4417 5.163874 GCATCAATTGTTTGTTTGTGTGTGT 60.164 36.000 5.13 0.00 34.32 3.72
3822 4418 5.063691 AGCATCAATTGTTTGTTTGTGTGTG 59.936 36.000 5.13 0.00 34.32 3.82
3823 4419 5.177326 AGCATCAATTGTTTGTTTGTGTGT 58.823 33.333 5.13 0.00 34.32 3.72
3824 4420 5.721876 AGCATCAATTGTTTGTTTGTGTG 57.278 34.783 5.13 0.00 34.32 3.82
3825 4421 6.018832 GCTAAGCATCAATTGTTTGTTTGTGT 60.019 34.615 16.97 1.77 34.32 3.72
3826 4422 6.201425 AGCTAAGCATCAATTGTTTGTTTGTG 59.799 34.615 16.97 12.62 34.32 3.33
3827 4423 6.282930 AGCTAAGCATCAATTGTTTGTTTGT 58.717 32.000 16.97 5.55 34.32 2.83
3828 4424 6.774354 AGCTAAGCATCAATTGTTTGTTTG 57.226 33.333 16.97 11.15 34.32 2.93
3829 4425 6.424812 GGAAGCTAAGCATCAATTGTTTGTTT 59.575 34.615 5.13 10.91 34.32 2.83
3866 4462 4.739195 TGAACAAACCCTTGAAGAAAACG 58.261 39.130 0.00 0.00 36.33 3.60
3894 4490 7.364144 GGAGATGAAGGTTTGGAAGCAAAATAT 60.364 37.037 0.00 0.00 0.00 1.28
3919 4515 1.112916 ACGGGGCCTTTTGAAACTGG 61.113 55.000 0.84 0.00 0.00 4.00
4226 4824 6.546403 TGGTTTAGACTCTCTACTGCGATTAT 59.454 38.462 0.00 0.00 0.00 1.28
4266 4864 0.765510 AAGGAAAAGCAGGGTCGAGT 59.234 50.000 0.00 0.00 0.00 4.18
4269 4867 1.172180 TGCAAGGAAAAGCAGGGTCG 61.172 55.000 0.00 0.00 35.51 4.79
4288 4886 3.778622 AGGACTACAGTACCAATCCCT 57.221 47.619 0.00 0.00 0.00 4.20
4468 5066 1.485066 CCAAACGGGGCTAGTGATACT 59.515 52.381 0.00 0.00 0.00 2.12
4913 5528 2.520465 TACACATGGCGAGGCAGGTG 62.520 60.000 32.25 32.25 33.77 4.00
5068 5687 0.589708 GGTTTCAACCTCCGTTTCGG 59.410 55.000 1.08 1.45 45.75 4.30
5137 5756 8.289618 TGCAACTATCTCACTTTTTGATACAAC 58.710 33.333 0.00 0.00 32.17 3.32
5232 5871 9.760077 TGATATCGAGGGAAAGAAACTAAATAC 57.240 33.333 0.00 0.00 0.00 1.89
5234 5873 9.853177 AATGATATCGAGGGAAAGAAACTAAAT 57.147 29.630 0.00 0.00 0.00 1.40
5286 5925 6.757947 GCATTTTGTGTTGGATAATAGCATGT 59.242 34.615 0.00 0.00 0.00 3.21
5326 5965 4.403432 AGTTGCTATGCTTGTTGCCATAAT 59.597 37.500 0.00 0.00 42.00 1.28
5338 5977 0.617413 ACCAGCTCAGTTGCTATGCT 59.383 50.000 0.00 0.00 41.98 3.79
5342 5981 3.007940 ACAACATACCAGCTCAGTTGCTA 59.992 43.478 11.11 0.00 42.32 3.49
5349 5988 2.368548 ACTGTCACAACATACCAGCTCA 59.631 45.455 0.00 0.00 34.13 4.26
5372 6011 5.163622 GGTTACATGTCAAGGTCATCAATGG 60.164 44.000 0.00 0.00 0.00 3.16
5377 6016 3.950397 TGGGTTACATGTCAAGGTCATC 58.050 45.455 0.00 0.00 0.00 2.92
5378 6017 4.380843 TTGGGTTACATGTCAAGGTCAT 57.619 40.909 0.00 0.00 0.00 3.06
5379 6018 3.866703 TTGGGTTACATGTCAAGGTCA 57.133 42.857 0.00 0.00 0.00 4.02
5380 6019 4.589908 AGATTGGGTTACATGTCAAGGTC 58.410 43.478 0.00 0.00 0.00 3.85
5381 6020 4.657814 AGATTGGGTTACATGTCAAGGT 57.342 40.909 0.00 0.00 0.00 3.50
5524 6169 5.849357 ACACGAAAATCTAATGCAACGTA 57.151 34.783 0.00 0.00 0.00 3.57
5543 6188 0.949105 CCCTGTCAAGCCACGTACAC 60.949 60.000 0.00 0.00 0.00 2.90
5572 6217 3.406764 CAACTGAGCAAGGAAAGTAGCT 58.593 45.455 0.00 0.00 40.60 3.32
5580 6226 0.250901 GAAGCCCAACTGAGCAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
5584 6230 0.036010 GCTAGAAGCCCAACTGAGCA 60.036 55.000 0.00 0.00 34.48 4.26
5596 6242 0.534652 GATGCAGGCCCAGCTAGAAG 60.535 60.000 17.61 0.00 0.00 2.85
5601 6247 2.080536 TATGGATGCAGGCCCAGCT 61.081 57.895 17.61 4.70 35.67 4.24
5607 6253 4.142093 ACAATTTTGAGTATGGATGCAGGC 60.142 41.667 0.00 0.00 0.00 4.85
5619 6265 7.602644 ACGTATGTGACATAGACAATTTTGAGT 59.397 33.333 5.37 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.