Multiple sequence alignment - TraesCS1A01G164200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G164200 chr1A 100.000 5872 0 0 1 5872 295590034 295584163 0.000000e+00 10844.0
1 TraesCS1A01G164200 chr1A 97.561 123 3 0 274 396 574666432 574666554 1.660000e-50 211.0
2 TraesCS1A01G164200 chr1A 89.933 149 14 1 274 421 552145805 552145953 2.160000e-44 191.0
3 TraesCS1A01G164200 chr1B 94.861 3775 124 33 2106 5872 327577973 327574261 0.000000e+00 5832.0
4 TraesCS1A01G164200 chr1B 94.351 1540 53 15 392 1902 327579734 327578200 0.000000e+00 2331.0
5 TraesCS1A01G164200 chr1B 96.364 275 9 1 1 274 327580005 327579731 8.970000e-123 451.0
6 TraesCS1A01G164200 chr1B 83.280 311 43 7 3279 3583 327576755 327576448 1.610000e-70 278.0
7 TraesCS1A01G164200 chr1B 94.697 132 6 1 274 404 151841126 151841257 2.770000e-48 204.0
8 TraesCS1A01G164200 chr1B 96.226 53 2 0 2056 2108 327578206 327578154 2.920000e-13 87.9
9 TraesCS1A01G164200 chr1D 94.012 3524 123 35 2370 5872 208086699 208090155 0.000000e+00 5258.0
10 TraesCS1A01G164200 chr1D 95.482 3187 75 12 2106 5291 228071439 228068321 0.000000e+00 5024.0
11 TraesCS1A01G164200 chr1D 94.470 1537 51 15 392 1899 208084719 208086250 0.000000e+00 2337.0
12 TraesCS1A01G164200 chr1D 93.770 1541 52 18 392 1902 228073193 228071667 0.000000e+00 2274.0
13 TraesCS1A01G164200 chr1D 94.500 600 18 6 5284 5872 228068160 228067565 0.000000e+00 911.0
14 TraesCS1A01G164200 chr1D 96.350 274 10 0 1 274 208084449 208084722 8.970000e-123 451.0
15 TraesCS1A01G164200 chr1D 96.350 274 10 0 1 274 228073463 228073190 8.970000e-123 451.0
16 TraesCS1A01G164200 chr1D 99.163 239 2 0 2106 2344 208086468 208086706 1.170000e-116 431.0
17 TraesCS1A01G164200 chr1D 83.121 314 38 7 3279 3583 208087649 208087956 7.500000e-69 272.0
18 TraesCS1A01G164200 chr1D 96.032 126 5 0 274 399 178459518 178459643 7.710000e-49 206.0
19 TraesCS1A01G164200 chr1D 100.000 52 0 0 2057 2108 228071672 228071621 4.840000e-16 97.1
20 TraesCS1A01G164200 chr1D 100.000 32 0 0 2057 2088 208086248 208086279 6.350000e-05 60.2
21 TraesCS1A01G164200 chr2D 94.643 168 9 0 1896 2063 299891717 299891550 1.620000e-65 261.0
22 TraesCS1A01G164200 chr4D 94.578 166 9 0 1898 2063 64390632 64390467 2.100000e-64 257.0
23 TraesCS1A01G164200 chr7D 93.605 172 9 2 1890 2060 382733813 382733643 7.550000e-64 255.0
24 TraesCS1A01G164200 chr5B 93.567 171 11 0 1891 2061 536228701 536228871 7.550000e-64 255.0
25 TraesCS1A01G164200 chr5B 92.806 139 6 3 260 394 244118006 244118144 1.290000e-46 198.0
26 TraesCS1A01G164200 chr4B 94.083 169 8 2 1898 2065 406389457 406389290 7.550000e-64 255.0
27 TraesCS1A01G164200 chr4B 92.982 171 11 1 1895 2065 549841919 549841750 1.260000e-61 248.0
28 TraesCS1A01G164200 chr7A 93.491 169 11 0 1894 2062 494786994 494786826 9.770000e-63 252.0
29 TraesCS1A01G164200 chr7B 93.491 169 8 3 1895 2062 570579059 570579225 1.260000e-61 248.0
30 TraesCS1A01G164200 chr6D 92.442 172 13 0 1888 2059 438321724 438321895 4.540000e-61 246.0
31 TraesCS1A01G164200 chr6D 95.349 129 5 1 274 402 303203856 303203983 2.770000e-48 204.0
32 TraesCS1A01G164200 chr3A 97.541 122 3 0 274 395 469077553 469077432 5.960000e-50 209.0
33 TraesCS1A01G164200 chr4A 95.385 130 4 2 267 395 709857065 709857193 7.710000e-49 206.0
34 TraesCS1A01G164200 chr4A 88.608 158 18 0 1517 1674 577538258 577538415 6.010000e-45 193.0
35 TraesCS1A01G164200 chr3B 95.312 128 6 0 274 401 201088133 201088260 2.770000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G164200 chr1A 295584163 295590034 5871 True 10844.00 10844 100.000000 1 5872 1 chr1A.!!$R1 5871
1 TraesCS1A01G164200 chr1B 327574261 327580005 5744 True 1795.98 5832 93.016400 1 5872 5 chr1B.!!$R1 5871
2 TraesCS1A01G164200 chr1D 228067565 228073463 5898 True 1751.42 5024 96.020400 1 5872 5 chr1D.!!$R1 5871
3 TraesCS1A01G164200 chr1D 208084449 208090155 5706 False 1468.20 5258 94.519333 1 5872 6 chr1D.!!$F2 5871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 617 1.476833 GGACTTGCACTCCAAACTCCA 60.477 52.381 4.92 0.00 33.43 3.86 F
1536 1566 0.329261 ATCAAGTTGGCTGCCTGCTA 59.671 50.000 21.03 4.33 42.39 3.49 F
1911 1943 1.207329 AGCATGTACTTCCTCCGTTCC 59.793 52.381 0.00 0.00 0.00 3.62 F
3489 3741 0.257039 AGACCAGCCAATGATCCACC 59.743 55.000 0.00 0.00 0.00 4.61 F
3539 3791 0.321564 TGGAAGACCAGCCAACGATG 60.322 55.000 0.00 0.00 41.77 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 2762 0.036952 GCACCAGTCTGCTGCTCTAA 60.037 55.000 12.12 0.0 41.26 2.10 R
3167 3392 1.065564 AGCAATCTCTGTGAGGGCTTC 60.066 52.381 0.00 0.0 31.79 3.86 R
3553 3805 0.394762 ATGATGCATCGTTGGCAGGT 60.395 50.000 21.34 0.0 45.68 4.00 R
4718 4970 0.618458 TGGATTCCGAAGAACCAGGG 59.382 55.000 0.00 0.0 33.97 4.45 R
4932 5184 3.009033 TCAACCTAGTTAATGTGGCAGCT 59.991 43.478 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 121 7.921786 TTCTATGGATATTTGGCCTTATTCG 57.078 36.000 3.32 0.00 0.00 3.34
184 186 9.920946 ACTATAAATTCAAGCCTTATCTTTCCA 57.079 29.630 0.00 0.00 0.00 3.53
205 207 4.246458 CAGTTGCCTAACAGTCCTTCTAC 58.754 47.826 0.00 0.00 39.30 2.59
276 278 7.775397 TGGTTGCGTACTTATTTTATACTCC 57.225 36.000 0.00 0.00 0.00 3.85
277 279 6.476380 TGGTTGCGTACTTATTTTATACTCCG 59.524 38.462 0.00 0.00 0.00 4.63
278 280 6.476706 GGTTGCGTACTTATTTTATACTCCGT 59.523 38.462 0.00 0.00 0.00 4.69
279 281 7.306225 GGTTGCGTACTTATTTTATACTCCGTC 60.306 40.741 0.00 0.00 0.00 4.79
280 282 6.208644 TGCGTACTTATTTTATACTCCGTCC 58.791 40.000 0.00 0.00 0.00 4.79
281 283 5.340667 GCGTACTTATTTTATACTCCGTCCG 59.659 44.000 0.00 0.00 0.00 4.79
282 284 5.853282 CGTACTTATTTTATACTCCGTCCGG 59.147 44.000 0.00 0.00 0.00 5.14
283 285 6.293407 CGTACTTATTTTATACTCCGTCCGGA 60.293 42.308 0.00 0.00 42.90 5.14
284 286 6.469782 ACTTATTTTATACTCCGTCCGGAA 57.530 37.500 5.23 0.00 44.66 4.30
285 287 6.877236 ACTTATTTTATACTCCGTCCGGAAA 58.123 36.000 5.23 1.53 44.66 3.13
286 288 7.503549 ACTTATTTTATACTCCGTCCGGAAAT 58.496 34.615 5.23 8.81 44.66 2.17
287 289 8.641541 ACTTATTTTATACTCCGTCCGGAAATA 58.358 33.333 5.23 7.89 44.66 1.40
288 290 8.816640 TTATTTTATACTCCGTCCGGAAATAC 57.183 34.615 5.23 0.00 44.66 1.89
289 291 6.469782 TTTTATACTCCGTCCGGAAATACT 57.530 37.500 5.23 0.00 44.66 2.12
290 292 6.469782 TTTATACTCCGTCCGGAAATACTT 57.530 37.500 5.23 0.00 44.66 2.24
291 293 2.667473 ACTCCGTCCGGAAATACTTG 57.333 50.000 5.23 0.00 44.66 3.16
292 294 1.897802 ACTCCGTCCGGAAATACTTGT 59.102 47.619 5.23 0.00 44.66 3.16
293 295 2.094338 ACTCCGTCCGGAAATACTTGTC 60.094 50.000 5.23 0.00 44.66 3.18
294 296 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
295 297 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
296 298 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
297 299 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
298 300 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
299 301 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
300 302 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
301 303 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
302 304 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
303 305 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
304 306 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
305 307 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
313 315 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
314 316 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
315 317 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
316 318 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
317 319 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
318 320 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
321 323 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
327 329 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
335 337 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
382 384 9.904198 TCCATATTGATGACAAGTATTTTCTGA 57.096 29.630 0.00 0.00 39.46 3.27
383 385 9.941664 CCATATTGATGACAAGTATTTTCTGAC 57.058 33.333 0.00 0.00 39.46 3.51
384 386 9.642312 CATATTGATGACAAGTATTTTCTGACG 57.358 33.333 0.00 0.00 39.46 4.35
385 387 6.480524 TTGATGACAAGTATTTTCTGACGG 57.519 37.500 0.00 0.00 0.00 4.79
386 388 5.789521 TGATGACAAGTATTTTCTGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
387 389 5.869344 TGATGACAAGTATTTTCTGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
388 390 4.566004 TGACAAGTATTTTCTGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
389 391 3.933332 GACAAGTATTTTCTGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
390 392 3.581332 ACAAGTATTTTCTGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
411 413 5.337169 GGGAGTACCATTCAGATCTCTATGC 60.337 48.000 0.00 0.00 39.85 3.14
423 425 8.788325 TCAGATCTCTATGCAATTATGATTGG 57.212 34.615 11.75 0.00 42.35 3.16
448 450 9.188588 GGTTAAGTTTTATGCAGTTTTACCTTC 57.811 33.333 0.00 0.00 0.00 3.46
451 453 5.048294 AGTTTTATGCAGTTTTACCTTCCCG 60.048 40.000 0.00 0.00 0.00 5.14
455 457 1.951602 GCAGTTTTACCTTCCCGTTGT 59.048 47.619 0.00 0.00 0.00 3.32
500 502 4.757149 GTCATTTATCACCACTATGCCCTC 59.243 45.833 0.00 0.00 0.00 4.30
532 534 5.762045 TCATCTTTAAGTGCTTGCTTTCAC 58.238 37.500 0.00 0.00 0.00 3.18
571 600 6.109359 ACTATGACTAATTCTTGCACTGGAC 58.891 40.000 0.00 0.00 0.00 4.02
588 617 1.476833 GGACTTGCACTCCAAACTCCA 60.477 52.381 4.92 0.00 33.43 3.86
590 619 2.291741 GACTTGCACTCCAAACTCCAAG 59.708 50.000 0.00 0.00 36.62 3.61
591 620 2.301346 CTTGCACTCCAAACTCCAAGT 58.699 47.619 0.00 0.00 31.94 3.16
593 622 2.297701 TGCACTCCAAACTCCAAGTTC 58.702 47.619 0.00 0.00 37.47 3.01
594 623 2.092429 TGCACTCCAAACTCCAAGTTCT 60.092 45.455 0.00 0.00 37.47 3.01
596 625 3.003793 GCACTCCAAACTCCAAGTTCTTC 59.996 47.826 0.00 0.00 37.47 2.87
610 639 5.395768 CCAAGTTCTTCCCGATTGATACTCT 60.396 44.000 0.00 0.00 0.00 3.24
673 702 8.612619 CCAATTACATAGTGGTAGTGTTTCATC 58.387 37.037 0.00 0.00 0.00 2.92
768 798 6.215636 AGATTTGAATCTGGTAACCTACCTGT 59.784 38.462 5.48 0.00 43.81 4.00
821 851 4.327087 CCTTTTCTTGCACTTGTGAACAAC 59.673 41.667 4.79 0.00 0.00 3.32
840 870 3.314541 ACCTACAGCAGTTTTCCGTAG 57.685 47.619 0.00 0.00 0.00 3.51
899 929 2.979813 CAATTTTGAGGTACGCACAAGC 59.020 45.455 0.00 0.00 38.28 4.01
956 986 4.891992 ATGGAGTAATGGAATCGTAGGG 57.108 45.455 0.00 0.00 0.00 3.53
957 987 2.367567 TGGAGTAATGGAATCGTAGGGC 59.632 50.000 0.00 0.00 0.00 5.19
962 992 4.620937 GGAATCGTAGGGCGCCCC 62.621 72.222 41.72 26.31 45.90 5.80
986 1016 4.347000 ACACCTTCTTTGCTACCTCTACAA 59.653 41.667 0.00 0.00 0.00 2.41
1242 1272 4.281898 TGTTGTTAAGGCCCTTAGAGAC 57.718 45.455 2.94 0.18 0.00 3.36
1261 1291 6.557110 AGAGACGAGACTAAAGCAAAGATAC 58.443 40.000 0.00 0.00 0.00 2.24
1290 1320 4.746089 GCTGATTCTATTCCTGGTGCAGAT 60.746 45.833 0.00 0.00 32.44 2.90
1305 1335 6.753180 TGGTGCAGATGAGAGAGTAATTATC 58.247 40.000 0.00 0.00 0.00 1.75
1340 1370 5.411669 ACCAAAATAACTCCGAACAAGCTAG 59.588 40.000 0.00 0.00 0.00 3.42
1495 1525 2.645838 AACTGCTGGTGATGTGACTT 57.354 45.000 0.00 0.00 0.00 3.01
1497 1527 1.271054 ACTGCTGGTGATGTGACTTCC 60.271 52.381 0.00 0.00 0.00 3.46
1536 1566 0.329261 ATCAAGTTGGCTGCCTGCTA 59.671 50.000 21.03 4.33 42.39 3.49
1578 1608 9.677567 ATTATACAACAATTGCGAAATGATACC 57.322 29.630 5.05 0.00 0.00 2.73
1665 1695 7.961325 ATTGGTGCAGGTAAATTTGTTTTAG 57.039 32.000 0.00 0.00 30.46 1.85
1698 1730 3.574396 TCCTTTGTTGTGTTGTGTTCCAA 59.426 39.130 0.00 0.00 0.00 3.53
1733 1765 3.565764 TGCTTGTATTGATCTCCAGGG 57.434 47.619 0.00 0.00 0.00 4.45
1734 1766 3.114606 TGCTTGTATTGATCTCCAGGGA 58.885 45.455 0.00 0.00 0.00 4.20
1735 1767 3.118261 TGCTTGTATTGATCTCCAGGGAC 60.118 47.826 0.00 0.00 0.00 4.46
1746 1778 4.301072 TCTCCAGGGACTTTTGTATTGG 57.699 45.455 0.00 0.00 34.60 3.16
1749 1781 4.810345 TCCAGGGACTTTTGTATTGGTTT 58.190 39.130 0.00 0.00 34.60 3.27
1895 1927 6.255287 TGGCATGGGTTAATTGATATAGCAT 58.745 36.000 0.00 0.00 0.00 3.79
1896 1928 6.153170 TGGCATGGGTTAATTGATATAGCATG 59.847 38.462 0.00 0.00 0.00 4.06
1897 1929 6.153340 GGCATGGGTTAATTGATATAGCATGT 59.847 38.462 0.00 0.00 0.00 3.21
1898 1930 7.339212 GGCATGGGTTAATTGATATAGCATGTA 59.661 37.037 0.00 0.00 0.00 2.29
1899 1931 8.184192 GCATGGGTTAATTGATATAGCATGTAC 58.816 37.037 0.00 0.00 0.00 2.90
1900 1932 9.453572 CATGGGTTAATTGATATAGCATGTACT 57.546 33.333 0.00 0.00 0.00 2.73
1902 1934 9.502091 TGGGTTAATTGATATAGCATGTACTTC 57.498 33.333 0.00 0.00 0.00 3.01
1903 1935 8.947115 GGGTTAATTGATATAGCATGTACTTCC 58.053 37.037 0.00 0.00 0.00 3.46
1904 1936 9.726438 GGTTAATTGATATAGCATGTACTTCCT 57.274 33.333 0.00 0.00 0.00 3.36
1906 1938 9.944376 TTAATTGATATAGCATGTACTTCCTCC 57.056 33.333 0.00 0.00 0.00 4.30
1907 1939 5.644977 TGATATAGCATGTACTTCCTCCG 57.355 43.478 0.00 0.00 0.00 4.63
1908 1940 5.077564 TGATATAGCATGTACTTCCTCCGT 58.922 41.667 0.00 0.00 0.00 4.69
1909 1941 5.538813 TGATATAGCATGTACTTCCTCCGTT 59.461 40.000 0.00 0.00 0.00 4.44
1910 1942 2.674796 AGCATGTACTTCCTCCGTTC 57.325 50.000 0.00 0.00 0.00 3.95
1911 1943 1.207329 AGCATGTACTTCCTCCGTTCC 59.793 52.381 0.00 0.00 0.00 3.62
1912 1944 1.207329 GCATGTACTTCCTCCGTTCCT 59.793 52.381 0.00 0.00 0.00 3.36
1913 1945 2.429610 GCATGTACTTCCTCCGTTCCTA 59.570 50.000 0.00 0.00 0.00 2.94
1914 1946 3.118884 GCATGTACTTCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
1915 1947 4.622220 GCATGTACTTCCTCCGTTCCTAAA 60.622 45.833 0.00 0.00 0.00 1.85
1916 1948 5.671493 CATGTACTTCCTCCGTTCCTAAAT 58.329 41.667 0.00 0.00 0.00 1.40
1917 1949 6.684613 GCATGTACTTCCTCCGTTCCTAAATA 60.685 42.308 0.00 0.00 0.00 1.40
1918 1950 7.442656 CATGTACTTCCTCCGTTCCTAAATAT 58.557 38.462 0.00 0.00 0.00 1.28
1919 1951 8.582437 CATGTACTTCCTCCGTTCCTAAATATA 58.418 37.037 0.00 0.00 0.00 0.86
1920 1952 8.537728 TGTACTTCCTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
1921 1953 8.636213 TGTACTTCCTCCGTTCCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
1922 1954 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
1923 1955 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1924 1956 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1925 1957 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
1926 1958 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
1927 1959 8.419442 TCCTCCGTTCCTAAATATAAGTCTTTC 58.581 37.037 0.00 0.00 0.00 2.62
1928 1960 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
1964 1996 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
1965 1997 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
1966 1998 6.422333 TGGACTACATATGGAGCAAAATGAA 58.578 36.000 15.30 0.00 0.00 2.57
1967 1999 7.062322 TGGACTACATATGGAGCAAAATGAAT 58.938 34.615 15.30 0.00 0.00 2.57
1968 2000 7.013559 TGGACTACATATGGAGCAAAATGAATG 59.986 37.037 15.30 0.00 0.00 2.67
1969 2001 7.229306 GGACTACATATGGAGCAAAATGAATGA 59.771 37.037 15.30 0.00 0.00 2.57
1970 2002 8.523915 ACTACATATGGAGCAAAATGAATGAA 57.476 30.769 15.30 0.00 0.00 2.57
1971 2003 9.139734 ACTACATATGGAGCAAAATGAATGAAT 57.860 29.630 15.30 0.00 0.00 2.57
1972 2004 9.622004 CTACATATGGAGCAAAATGAATGAATC 57.378 33.333 0.89 0.00 0.00 2.52
1973 2005 8.246430 ACATATGGAGCAAAATGAATGAATCT 57.754 30.769 7.80 0.00 0.00 2.40
1974 2006 9.358406 ACATATGGAGCAAAATGAATGAATCTA 57.642 29.630 7.80 0.00 0.00 1.98
1978 2010 8.985315 TGGAGCAAAATGAATGAATCTATACT 57.015 30.769 0.00 0.00 0.00 2.12
1979 2011 9.060347 TGGAGCAAAATGAATGAATCTATACTC 57.940 33.333 0.00 0.00 0.00 2.59
1980 2012 9.282569 GGAGCAAAATGAATGAATCTATACTCT 57.717 33.333 0.00 0.00 0.00 3.24
1988 2020 9.698309 ATGAATGAATCTATACTCTAAACCACG 57.302 33.333 0.00 0.00 0.00 4.94
1989 2021 8.692710 TGAATGAATCTATACTCTAAACCACGT 58.307 33.333 0.00 0.00 0.00 4.49
1990 2022 9.182933 GAATGAATCTATACTCTAAACCACGTC 57.817 37.037 0.00 0.00 0.00 4.34
1991 2023 7.876936 TGAATCTATACTCTAAACCACGTCT 57.123 36.000 0.00 0.00 0.00 4.18
1992 2024 8.969260 TGAATCTATACTCTAAACCACGTCTA 57.031 34.615 0.00 0.00 0.00 2.59
1993 2025 9.570468 TGAATCTATACTCTAAACCACGTCTAT 57.430 33.333 0.00 0.00 0.00 1.98
2001 2033 8.108551 ACTCTAAACCACGTCTATATACATCC 57.891 38.462 0.00 0.00 0.00 3.51
2002 2034 7.094890 ACTCTAAACCACGTCTATATACATCCG 60.095 40.741 0.00 0.00 0.00 4.18
2003 2035 5.779529 AAACCACGTCTATATACATCCGT 57.220 39.130 0.00 0.00 0.00 4.69
2004 2036 6.882610 AAACCACGTCTATATACATCCGTA 57.117 37.500 0.00 0.00 0.00 4.02
2005 2037 7.458409 AAACCACGTCTATATACATCCGTAT 57.542 36.000 0.00 0.00 41.34 3.06
2006 2038 6.432607 ACCACGTCTATATACATCCGTATG 57.567 41.667 0.00 0.00 38.79 2.39
2019 2051 6.812879 ACATCCGTATGTAGTCGATATTGA 57.187 37.500 0.00 0.00 44.66 2.57
2020 2052 7.210718 ACATCCGTATGTAGTCGATATTGAA 57.789 36.000 0.00 0.00 44.66 2.69
2021 2053 7.654568 ACATCCGTATGTAGTCGATATTGAAA 58.345 34.615 0.00 0.00 44.66 2.69
2022 2054 8.304596 ACATCCGTATGTAGTCGATATTGAAAT 58.695 33.333 0.00 0.00 44.66 2.17
2023 2055 8.799091 CATCCGTATGTAGTCGATATTGAAATC 58.201 37.037 0.00 0.00 0.00 2.17
2024 2056 8.107399 TCCGTATGTAGTCGATATTGAAATCT 57.893 34.615 0.00 0.00 0.00 2.40
2025 2057 8.235226 TCCGTATGTAGTCGATATTGAAATCTC 58.765 37.037 0.00 0.00 0.00 2.75
2026 2058 8.237949 CCGTATGTAGTCGATATTGAAATCTCT 58.762 37.037 0.00 0.00 0.00 3.10
2034 2066 9.959749 AGTCGATATTGAAATCTCTAGAAAGAC 57.040 33.333 0.00 0.00 0.00 3.01
2035 2067 9.959749 GTCGATATTGAAATCTCTAGAAAGACT 57.040 33.333 0.00 0.00 0.00 3.24
2053 2085 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2054 2086 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2483 2708 9.612620 AAGAGTTTTCTATTAAAATTCTGTGCG 57.387 29.630 8.43 0.00 36.66 5.34
2537 2762 2.275380 GGGGCAAATGTTCGGCAGT 61.275 57.895 0.00 0.00 0.00 4.40
2575 2800 2.288666 GCTCGCATTATGGTTCAGGAA 58.711 47.619 0.00 0.00 0.00 3.36
2580 2805 3.181488 CGCATTATGGTTCAGGAATTGCA 60.181 43.478 0.00 0.00 0.00 4.08
2647 2872 6.215636 AGGAGGTAAGATGTAGATGGTTGTTT 59.784 38.462 0.00 0.00 0.00 2.83
2656 2881 9.461312 AGATGTAGATGGTTGTTTAAATTGCTA 57.539 29.630 0.00 0.00 0.00 3.49
2709 2934 5.087323 TGAGTCCTCACAGTTTTATCTCCT 58.913 41.667 0.00 0.00 34.14 3.69
2711 2936 6.897966 TGAGTCCTCACAGTTTTATCTCCTAT 59.102 38.462 0.00 0.00 34.14 2.57
2712 2937 7.118496 AGTCCTCACAGTTTTATCTCCTATG 57.882 40.000 0.00 0.00 0.00 2.23
2758 2983 4.796606 CTGATCCAGTATCCCCAACAATT 58.203 43.478 0.00 0.00 33.22 2.32
2857 3082 2.260844 CACCTTCTGAGGAGCACAAA 57.739 50.000 0.00 0.00 46.74 2.83
2886 3111 7.201750 GGTTACAAGACTTGTTGTACCATCAAA 60.202 37.037 25.10 7.36 42.22 2.69
2971 3196 3.945285 GGGCTGAAATCCGAGTTTATTCA 59.055 43.478 0.00 0.00 0.00 2.57
2980 3205 5.607119 TCCGAGTTTATTCAAAAGCAGAC 57.393 39.130 0.00 0.00 0.00 3.51
3068 3293 6.867816 GCATCAAGTTGTCCATATTGTTTCAA 59.132 34.615 2.11 0.00 0.00 2.69
3069 3294 7.546667 GCATCAAGTTGTCCATATTGTTTCAAT 59.453 33.333 2.11 0.80 0.00 2.57
3128 3353 9.277565 CTTGTTATTATGCTGTTACATGTGTTC 57.722 33.333 9.11 0.00 0.00 3.18
3167 3392 3.135348 TGGGTCTCCAGATATTGCAAGAG 59.865 47.826 4.94 5.02 38.32 2.85
3173 3398 2.883386 CCAGATATTGCAAGAGAAGCCC 59.117 50.000 4.94 0.00 0.00 5.19
3200 3425 3.449018 AGAGATTGCTTCGAGGCTTAGAA 59.551 43.478 20.92 6.78 0.00 2.10
3268 3493 5.728253 TGCTGATATATTTCCTAGCAGGGAT 59.272 40.000 4.69 0.00 36.37 3.85
3323 3548 2.824689 TGGAAGGCTTGCCAATGATA 57.175 45.000 16.49 0.00 0.00 2.15
3415 3667 3.491447 GGCTTGCCATTGATCAACCATAC 60.491 47.826 11.07 0.00 0.00 2.39
3489 3741 0.257039 AGACCAGCCAATGATCCACC 59.743 55.000 0.00 0.00 0.00 4.61
3537 3789 3.557220 TGGAAGACCAGCCAACGA 58.443 55.556 0.00 0.00 41.77 3.85
3538 3790 2.066340 TGGAAGACCAGCCAACGAT 58.934 52.632 0.00 0.00 41.77 3.73
3539 3791 0.321564 TGGAAGACCAGCCAACGATG 60.322 55.000 0.00 0.00 41.77 3.84
3540 3792 1.648467 GGAAGACCAGCCAACGATGC 61.648 60.000 0.00 0.00 35.97 3.91
3541 3793 0.955428 GAAGACCAGCCAACGATGCA 60.955 55.000 0.00 0.00 0.00 3.96
3542 3794 0.322816 AAGACCAGCCAACGATGCAT 60.323 50.000 0.00 0.00 0.00 3.96
3543 3795 0.745845 AGACCAGCCAACGATGCATC 60.746 55.000 17.10 17.10 0.00 3.91
3544 3796 1.002257 ACCAGCCAACGATGCATCA 60.002 52.632 25.70 0.00 0.00 3.07
3545 3797 0.394762 ACCAGCCAACGATGCATCAT 60.395 50.000 25.70 8.76 0.00 2.45
3546 3798 1.134128 ACCAGCCAACGATGCATCATA 60.134 47.619 25.70 0.00 0.00 2.15
3547 3799 2.156917 CCAGCCAACGATGCATCATAT 58.843 47.619 25.70 8.32 0.00 1.78
3548 3800 2.095415 CCAGCCAACGATGCATCATATG 60.095 50.000 25.70 18.92 0.00 1.78
3549 3801 2.095415 CAGCCAACGATGCATCATATGG 60.095 50.000 26.45 26.45 0.00 2.74
3550 3802 1.200716 GCCAACGATGCATCATATGGG 59.799 52.381 29.20 20.98 0.00 4.00
3551 3803 2.781923 CCAACGATGCATCATATGGGA 58.218 47.619 25.70 0.00 0.00 4.37
3552 3804 2.745821 CCAACGATGCATCATATGGGAG 59.254 50.000 25.70 9.65 0.00 4.30
3553 3805 3.557686 CCAACGATGCATCATATGGGAGA 60.558 47.826 25.70 0.00 0.00 3.71
3554 3806 3.325293 ACGATGCATCATATGGGAGAC 57.675 47.619 25.70 0.00 0.00 3.36
3569 3821 0.745845 GAGACCTGCCAACGATGCAT 60.746 55.000 0.00 0.00 38.22 3.96
3593 3845 4.208632 GGAGACCTGCCAACGATG 57.791 61.111 0.00 0.00 0.00 3.84
3631 3883 2.151202 GCCAACGATACACCATATGGG 58.849 52.381 25.55 16.20 44.81 4.00
3808 4060 4.141620 CCTGTTAGTCCTGGTGCTGATTAT 60.142 45.833 0.00 0.00 0.00 1.28
3868 4120 7.339212 ACTGATAGCTATTCTAGTAGAGGCATG 59.661 40.741 7.87 0.00 0.00 4.06
4054 4306 7.270757 TGAAACTGTGTAGTGTATGCAATTT 57.729 32.000 0.00 0.00 37.19 1.82
4075 4327 6.755542 TTTTTCCATAACTGGTTGGGATTT 57.244 33.333 8.68 0.00 43.61 2.17
4143 4395 7.549842 ACTGATCTGCATTCATATCATTCTAGC 59.450 37.037 0.00 0.00 35.92 3.42
4144 4396 7.621796 TGATCTGCATTCATATCATTCTAGCT 58.378 34.615 0.00 0.00 32.84 3.32
4145 4397 7.549488 TGATCTGCATTCATATCATTCTAGCTG 59.451 37.037 0.00 0.00 32.84 4.24
4146 4398 6.766429 TCTGCATTCATATCATTCTAGCTGT 58.234 36.000 0.00 0.00 0.00 4.40
4147 4399 6.872547 TCTGCATTCATATCATTCTAGCTGTC 59.127 38.462 0.00 0.00 0.00 3.51
4148 4400 6.527423 TGCATTCATATCATTCTAGCTGTCA 58.473 36.000 0.00 0.00 0.00 3.58
4149 4401 6.426025 TGCATTCATATCATTCTAGCTGTCAC 59.574 38.462 0.00 0.00 0.00 3.67
4150 4402 6.649973 GCATTCATATCATTCTAGCTGTCACT 59.350 38.462 0.00 0.00 0.00 3.41
4151 4403 7.172875 GCATTCATATCATTCTAGCTGTCACTT 59.827 37.037 0.00 0.00 0.00 3.16
4152 4404 8.710551 CATTCATATCATTCTAGCTGTCACTTC 58.289 37.037 0.00 0.00 0.00 3.01
4153 4405 7.594351 TCATATCATTCTAGCTGTCACTTCT 57.406 36.000 0.00 0.00 0.00 2.85
4154 4406 7.432059 TCATATCATTCTAGCTGTCACTTCTG 58.568 38.462 0.00 0.00 0.00 3.02
4155 4407 5.674052 ATCATTCTAGCTGTCACTTCTGT 57.326 39.130 0.00 0.00 0.00 3.41
4156 4408 4.814147 TCATTCTAGCTGTCACTTCTGTG 58.186 43.478 0.00 0.00 45.07 3.66
4157 4409 2.732412 TCTAGCTGTCACTTCTGTGC 57.268 50.000 0.00 0.00 43.49 4.57
4158 4410 1.963515 TCTAGCTGTCACTTCTGTGCA 59.036 47.619 0.00 0.00 43.49 4.57
4159 4411 2.064762 CTAGCTGTCACTTCTGTGCAC 58.935 52.381 10.75 10.75 43.49 4.57
4160 4412 0.467384 AGCTGTCACTTCTGTGCACT 59.533 50.000 19.41 0.00 43.49 4.40
4161 4413 1.688735 AGCTGTCACTTCTGTGCACTA 59.311 47.619 19.41 3.10 43.49 2.74
4162 4414 2.301296 AGCTGTCACTTCTGTGCACTAT 59.699 45.455 19.41 0.00 43.49 2.12
4163 4415 3.511540 AGCTGTCACTTCTGTGCACTATA 59.488 43.478 19.41 0.00 43.49 1.31
4164 4416 4.021104 AGCTGTCACTTCTGTGCACTATAA 60.021 41.667 19.41 8.50 43.49 0.98
4165 4417 4.092091 GCTGTCACTTCTGTGCACTATAAC 59.908 45.833 19.41 7.70 43.49 1.89
4166 4418 5.468540 TGTCACTTCTGTGCACTATAACT 57.531 39.130 19.41 0.00 43.49 2.24
4167 4419 5.853936 TGTCACTTCTGTGCACTATAACTT 58.146 37.500 19.41 0.00 43.49 2.66
4168 4420 5.696270 TGTCACTTCTGTGCACTATAACTTG 59.304 40.000 19.41 6.74 43.49 3.16
4179 4431 7.174772 TGTGCACTATAACTTGTTGATGTTCAT 59.825 33.333 19.41 0.00 0.00 2.57
4242 4494 2.550830 TTCCTTGTCTGGCTCTGTTC 57.449 50.000 0.00 0.00 0.00 3.18
4706 4958 3.817084 TCTCTGGTGCAAGAATGAAGTTG 59.183 43.478 0.00 0.00 0.00 3.16
4718 4970 1.081175 GAAGTTGCTTGAAGCCCGC 60.081 57.895 15.43 4.74 41.51 6.13
4932 5184 0.400213 AACTCCAGGTCGATTGCCAA 59.600 50.000 0.00 0.00 0.00 4.52
4984 5236 8.015658 GTGTAACTTAGATCATGTTTGTTGACC 58.984 37.037 0.00 0.00 0.00 4.02
5153 5406 5.106197 TGGTTGAAGCTGTTGTTATATGCAG 60.106 40.000 0.00 0.00 0.00 4.41
5163 5416 7.587757 GCTGTTGTTATATGCAGTGCTATTTAC 59.412 37.037 17.60 9.60 0.00 2.01
5175 5428 5.176774 CAGTGCTATTTACGAACTTCACACA 59.823 40.000 0.00 0.00 0.00 3.72
5257 5510 3.195661 GTGTTAGGAGGCCATAGTTTCG 58.804 50.000 5.01 0.00 0.00 3.46
5282 5535 6.487689 ACTTAGAATTCTGTTTGTAGCAGC 57.512 37.500 18.47 0.00 34.21 5.25
5419 5841 6.774354 AAAAATGTATTGCTTTGTGCTCAG 57.226 33.333 0.00 0.00 43.37 3.35
5420 5842 5.458041 AAATGTATTGCTTTGTGCTCAGT 57.542 34.783 0.00 0.00 43.37 3.41
5421 5843 6.573664 AAATGTATTGCTTTGTGCTCAGTA 57.426 33.333 0.00 0.00 43.37 2.74
5718 6155 7.676004 TGGAATTCCAAAAGATAAAAAGACCC 58.324 34.615 25.13 0.00 44.35 4.46
5846 6285 2.888594 CAAAGATCAAAGGCAGCATGG 58.111 47.619 0.00 0.00 35.86 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 4.072131 GAGCGAATAAGGCCAAATATCCA 58.928 43.478 5.01 0.00 0.00 3.41
119 121 1.204467 AGAGAAGCTACAGTGCTGAGC 59.796 52.381 6.17 0.00 43.24 4.26
205 207 6.678900 GCAAAGATGTCCTAGCTTTACAATGG 60.679 42.308 0.00 0.00 42.76 3.16
254 256 7.455331 ACGGAGTATAAAATAAGTACGCAAC 57.545 36.000 0.00 0.00 41.94 4.17
273 275 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
274 276 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
275 277 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
276 278 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
277 279 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
278 280 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
279 281 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
280 282 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
287 289 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
288 290 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
289 291 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
290 292 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
291 293 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
292 294 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
295 297 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
301 303 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
309 311 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
356 358 9.904198 TCAGAAAATACTTGTCATCAATATGGA 57.096 29.630 0.00 0.00 33.61 3.41
357 359 9.941664 GTCAGAAAATACTTGTCATCAATATGG 57.058 33.333 0.00 0.00 33.61 2.74
358 360 9.642312 CGTCAGAAAATACTTGTCATCAATATG 57.358 33.333 0.00 0.00 32.82 1.78
359 361 8.830580 CCGTCAGAAAATACTTGTCATCAATAT 58.169 33.333 0.00 0.00 32.82 1.28
360 362 8.038351 TCCGTCAGAAAATACTTGTCATCAATA 58.962 33.333 0.00 0.00 32.82 1.90
361 363 6.878923 TCCGTCAGAAAATACTTGTCATCAAT 59.121 34.615 0.00 0.00 32.82 2.57
362 364 6.227522 TCCGTCAGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
363 365 5.789521 TCCGTCAGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
364 366 5.292101 CCTCCGTCAGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
365 367 5.178797 CCTCCGTCAGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
366 368 4.562757 CCCTCCGTCAGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
367 369 3.933332 CCCTCCGTCAGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
368 370 3.581332 TCCCTCCGTCAGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
369 371 4.184629 CTCCCTCCGTCAGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
370 372 3.838903 ACTCCCTCCGTCAGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
371 373 3.442076 ACTCCCTCCGTCAGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
372 374 3.889520 ACTCCCTCCGTCAGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
373 375 3.703052 GGTACTCCCTCCGTCAGAAAATA 59.297 47.826 0.00 0.00 0.00 1.40
374 376 2.500504 GGTACTCCCTCCGTCAGAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
375 377 1.897802 GGTACTCCCTCCGTCAGAAAA 59.102 52.381 0.00 0.00 0.00 2.29
376 378 1.203087 TGGTACTCCCTCCGTCAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
377 379 0.406750 TGGTACTCCCTCCGTCAGAA 59.593 55.000 0.00 0.00 0.00 3.02
378 380 0.629596 ATGGTACTCCCTCCGTCAGA 59.370 55.000 0.00 0.00 0.00 3.27
379 381 1.409427 GAATGGTACTCCCTCCGTCAG 59.591 57.143 0.00 0.00 0.00 3.51
380 382 1.272816 TGAATGGTACTCCCTCCGTCA 60.273 52.381 0.00 0.00 0.00 4.35
381 383 1.409427 CTGAATGGTACTCCCTCCGTC 59.591 57.143 0.00 0.00 0.00 4.79
382 384 1.006758 TCTGAATGGTACTCCCTCCGT 59.993 52.381 0.00 0.00 0.00 4.69
383 385 1.776662 TCTGAATGGTACTCCCTCCG 58.223 55.000 0.00 0.00 0.00 4.63
384 386 3.576550 GAGATCTGAATGGTACTCCCTCC 59.423 52.174 0.00 0.00 0.00 4.30
385 387 4.479158 AGAGATCTGAATGGTACTCCCTC 58.521 47.826 0.00 0.00 0.00 4.30
386 388 4.551215 AGAGATCTGAATGGTACTCCCT 57.449 45.455 0.00 0.00 0.00 4.20
387 389 5.337169 GCATAGAGATCTGAATGGTACTCCC 60.337 48.000 0.00 0.00 0.00 4.30
388 390 5.244851 TGCATAGAGATCTGAATGGTACTCC 59.755 44.000 0.00 0.00 0.00 3.85
389 391 6.338214 TGCATAGAGATCTGAATGGTACTC 57.662 41.667 0.00 0.00 0.00 2.59
390 392 6.737720 TTGCATAGAGATCTGAATGGTACT 57.262 37.500 0.00 0.00 0.00 2.73
423 425 9.188588 GGAAGGTAAAACTGCATAAAACTTAAC 57.811 33.333 0.00 0.00 0.00 2.01
448 450 6.260050 ACATCATAACATAGCTTTACAACGGG 59.740 38.462 0.00 0.00 0.00 5.28
500 502 7.043590 GCAAGCACTTAAAGATGAAATATGCAG 60.044 37.037 0.00 0.00 32.99 4.41
588 617 5.187967 ACAGAGTATCAATCGGGAAGAACTT 59.812 40.000 0.00 0.00 37.82 2.66
590 619 5.012328 ACAGAGTATCAATCGGGAAGAAC 57.988 43.478 0.00 0.00 37.82 3.01
591 620 5.677319 AACAGAGTATCAATCGGGAAGAA 57.323 39.130 0.00 0.00 37.82 2.52
593 622 6.073548 GCATAAACAGAGTATCAATCGGGAAG 60.074 42.308 0.00 0.00 37.82 3.46
594 623 5.758296 GCATAAACAGAGTATCAATCGGGAA 59.242 40.000 0.00 0.00 37.82 3.97
596 625 5.056480 TGCATAAACAGAGTATCAATCGGG 58.944 41.667 0.00 0.00 37.82 5.14
673 702 5.989477 TCCCACCTACTGTATTTCATTCAG 58.011 41.667 0.00 0.00 34.31 3.02
840 870 3.861840 TGCTCATGTTGCTACTTAGACC 58.138 45.455 12.86 0.00 0.00 3.85
899 929 3.261580 TGACACATGCATAACCTTCTCG 58.738 45.455 0.00 0.00 0.00 4.04
956 986 2.597510 AAAGAAGGTGTGGGGCGC 60.598 61.111 0.00 0.00 0.00 6.53
957 987 2.919494 GCAAAGAAGGTGTGGGGCG 61.919 63.158 0.00 0.00 0.00 6.13
962 992 3.409026 AGAGGTAGCAAAGAAGGTGTG 57.591 47.619 0.00 0.00 0.00 3.82
997 1027 7.824289 CAGTCTACATAAAGAAAGGTCCATCAA 59.176 37.037 0.00 0.00 0.00 2.57
1242 1272 3.797256 CCCGTATCTTTGCTTTAGTCTCG 59.203 47.826 0.00 0.00 0.00 4.04
1261 1291 2.874701 CAGGAATAGAATCAGCAACCCG 59.125 50.000 0.00 0.00 0.00 5.28
1357 1387 2.242965 TCATGTTCTCTGGGCCATCAAT 59.757 45.455 6.72 0.00 0.00 2.57
1366 1396 0.329261 TGGGGCTTCATGTTCTCTGG 59.671 55.000 0.00 0.00 0.00 3.86
1459 1489 3.817647 GCAGTTTCAGAATTCTCACAGGT 59.182 43.478 4.57 0.00 0.00 4.00
1463 1493 3.817647 ACCAGCAGTTTCAGAATTCTCAC 59.182 43.478 4.57 3.01 0.00 3.51
1495 1525 1.917872 CCTGGAACCAAAATTCGGGA 58.082 50.000 2.58 0.00 0.00 5.14
1497 1527 0.965439 TGCCTGGAACCAAAATTCGG 59.035 50.000 0.00 0.00 0.00 4.30
1536 1566 6.824958 TGTATAATAGAGCCACCTTTTCCT 57.175 37.500 0.00 0.00 0.00 3.36
1593 1623 3.345508 AGGTTTTCGGATGGTAAGACC 57.654 47.619 0.00 0.00 39.22 3.85
1665 1695 7.651704 ACAACACAACAAAGGATATTTTGCTAC 59.348 33.333 0.67 0.00 40.80 3.58
1708 1740 5.163581 CCTGGAGATCAATACAAGCAAAAGG 60.164 44.000 0.00 0.00 0.00 3.11
1733 1765 8.642908 AGCTAAACAAAACCAATACAAAAGTC 57.357 30.769 0.00 0.00 0.00 3.01
1746 1778 9.691362 TGAATCCAAATCTAAGCTAAACAAAAC 57.309 29.630 0.00 0.00 0.00 2.43
1848 1880 7.628580 GCCAGATACCAAACTCTAAAATCCAAC 60.629 40.741 0.00 0.00 0.00 3.77
1895 1927 8.537728 TTATATTTAGGAACGGAGGAAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
1896 1928 8.637099 ACTTATATTTAGGAACGGAGGAAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
1897 1929 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
1898 1930 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
1899 1931 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
1900 1932 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
1901 1933 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
1902 1934 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
1932 1964 8.887717 GCTCCATATGTAGTCCATATTGAAATC 58.112 37.037 1.24 0.00 42.87 2.17
1933 1965 8.385491 TGCTCCATATGTAGTCCATATTGAAAT 58.615 33.333 1.24 0.00 42.87 2.17
1934 1966 7.744733 TGCTCCATATGTAGTCCATATTGAAA 58.255 34.615 1.24 0.00 42.87 2.69
1935 1967 7.315066 TGCTCCATATGTAGTCCATATTGAA 57.685 36.000 1.24 0.00 42.87 2.69
1936 1968 6.933514 TGCTCCATATGTAGTCCATATTGA 57.066 37.500 1.24 0.00 42.87 2.57
1937 1969 7.984422 TTTGCTCCATATGTAGTCCATATTG 57.016 36.000 1.24 0.00 42.87 1.90
1938 1970 9.017509 CATTTTGCTCCATATGTAGTCCATATT 57.982 33.333 1.24 0.00 42.87 1.28
1939 1971 8.385491 TCATTTTGCTCCATATGTAGTCCATAT 58.615 33.333 1.24 0.00 45.67 1.78
1940 1972 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
1941 1973 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
1942 1974 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
1943 1975 6.942532 TTCATTTTGCTCCATATGTAGTCC 57.057 37.500 1.24 0.00 0.00 3.85
1944 1976 8.158169 TCATTCATTTTGCTCCATATGTAGTC 57.842 34.615 1.24 0.00 0.00 2.59
1945 1977 8.523915 TTCATTCATTTTGCTCCATATGTAGT 57.476 30.769 1.24 0.00 0.00 2.73
1946 1978 9.622004 GATTCATTCATTTTGCTCCATATGTAG 57.378 33.333 1.24 0.00 0.00 2.74
1947 1979 9.358406 AGATTCATTCATTTTGCTCCATATGTA 57.642 29.630 1.24 0.00 0.00 2.29
1948 1980 8.246430 AGATTCATTCATTTTGCTCCATATGT 57.754 30.769 1.24 0.00 0.00 2.29
1952 1984 9.584008 AGTATAGATTCATTCATTTTGCTCCAT 57.416 29.630 0.00 0.00 0.00 3.41
1953 1985 8.985315 AGTATAGATTCATTCATTTTGCTCCA 57.015 30.769 0.00 0.00 0.00 3.86
1954 1986 9.282569 AGAGTATAGATTCATTCATTTTGCTCC 57.717 33.333 0.00 0.00 0.00 4.70
1962 1994 9.698309 CGTGGTTTAGAGTATAGATTCATTCAT 57.302 33.333 0.00 0.00 0.00 2.57
1963 1995 8.692710 ACGTGGTTTAGAGTATAGATTCATTCA 58.307 33.333 0.00 0.00 0.00 2.57
1964 1996 9.182933 GACGTGGTTTAGAGTATAGATTCATTC 57.817 37.037 0.00 0.00 0.00 2.67
1965 1997 8.915036 AGACGTGGTTTAGAGTATAGATTCATT 58.085 33.333 0.00 0.00 0.00 2.57
1966 1998 8.466617 AGACGTGGTTTAGAGTATAGATTCAT 57.533 34.615 0.00 0.00 0.00 2.57
1967 1999 7.876936 AGACGTGGTTTAGAGTATAGATTCA 57.123 36.000 0.00 0.00 0.00 2.57
1975 2007 9.224267 GGATGTATATAGACGTGGTTTAGAGTA 57.776 37.037 0.00 0.00 0.00 2.59
1976 2008 7.094890 CGGATGTATATAGACGTGGTTTAGAGT 60.095 40.741 0.00 0.00 0.00 3.24
1977 2009 7.094890 ACGGATGTATATAGACGTGGTTTAGAG 60.095 40.741 0.00 0.00 32.90 2.43
1978 2010 6.712095 ACGGATGTATATAGACGTGGTTTAGA 59.288 38.462 0.00 0.00 32.90 2.10
1979 2011 6.906659 ACGGATGTATATAGACGTGGTTTAG 58.093 40.000 0.00 0.00 32.90 1.85
1980 2012 6.882610 ACGGATGTATATAGACGTGGTTTA 57.117 37.500 0.00 0.00 32.90 2.01
1981 2013 5.779529 ACGGATGTATATAGACGTGGTTT 57.220 39.130 0.00 0.00 32.90 3.27
1982 2014 6.432162 ACATACGGATGTATATAGACGTGGTT 59.568 38.462 12.79 0.00 44.77 3.67
1983 2015 5.942236 ACATACGGATGTATATAGACGTGGT 59.058 40.000 12.79 0.00 44.77 4.16
1984 2016 6.432607 ACATACGGATGTATATAGACGTGG 57.567 41.667 12.79 6.27 44.77 4.94
1985 2017 8.194433 ACTACATACGGATGTATATAGACGTG 57.806 38.462 20.64 8.41 45.42 4.49
1986 2018 7.221645 CGACTACATACGGATGTATATAGACGT 59.778 40.741 20.64 12.85 44.03 4.34
1987 2019 7.553883 CGACTACATACGGATGTATATAGACG 58.446 42.308 20.64 17.51 45.42 4.18
1988 2020 8.640091 TCGACTACATACGGATGTATATAGAC 57.360 38.462 20.64 10.27 45.42 2.59
1993 2025 9.603921 TCAATATCGACTACATACGGATGTATA 57.396 33.333 20.64 11.30 45.42 1.47
1994 2026 8.502105 TCAATATCGACTACATACGGATGTAT 57.498 34.615 20.64 9.39 45.42 2.29
1995 2027 7.910441 TCAATATCGACTACATACGGATGTA 57.090 36.000 19.32 19.32 44.77 2.29
1997 2029 8.689251 ATTTCAATATCGACTACATACGGATG 57.311 34.615 5.94 5.94 39.16 3.51
1998 2030 8.740906 AGATTTCAATATCGACTACATACGGAT 58.259 33.333 0.00 0.00 0.00 4.18
1999 2031 8.107399 AGATTTCAATATCGACTACATACGGA 57.893 34.615 0.00 0.00 0.00 4.69
2000 2032 8.237949 AGAGATTTCAATATCGACTACATACGG 58.762 37.037 0.00 0.00 32.13 4.02
2008 2040 9.959749 GTCTTTCTAGAGATTTCAATATCGACT 57.040 33.333 0.00 0.00 32.13 4.18
2009 2041 9.959749 AGTCTTTCTAGAGATTTCAATATCGAC 57.040 33.333 0.00 0.00 32.13 4.20
2027 2059 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2028 2060 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2029 2061 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2030 2062 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2031 2063 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2032 2064 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2033 2065 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2034 2066 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2035 2067 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2036 2068 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2037 2069 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2038 2070 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2039 2071 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2040 2072 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2041 2073 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2042 2074 3.463048 AAACTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
2043 2075 2.322339 AAACTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
2044 2076 4.750021 AATAAACTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
2045 2077 8.037166 TCTAAAAATAAACTACTCCCTCCGTTC 58.963 37.037 0.00 0.00 0.00 3.95
2046 2078 7.910584 TCTAAAAATAAACTACTCCCTCCGTT 58.089 34.615 0.00 0.00 0.00 4.44
2047 2079 7.486407 TCTAAAAATAAACTACTCCCTCCGT 57.514 36.000 0.00 0.00 0.00 4.69
2048 2080 8.959705 AATCTAAAAATAAACTACTCCCTCCG 57.040 34.615 0.00 0.00 0.00 4.63
2537 2762 0.036952 GCACCAGTCTGCTGCTCTAA 60.037 55.000 12.12 0.00 41.26 2.10
2580 2805 4.077822 CCTTTCTCCAGAAGCATCTTTGT 58.922 43.478 0.00 0.00 35.21 2.83
2657 2882 9.379770 TGTGAAGATTGGTATGATAAGGAGATA 57.620 33.333 0.00 0.00 0.00 1.98
2758 2983 3.153369 TGGAGCAAAATAAGTGCCTCA 57.847 42.857 0.00 0.00 43.27 3.86
2857 3082 6.123651 TGGTACAACAAGTCTTGTAACCAAT 58.876 36.000 28.35 10.78 44.59 3.16
2886 3111 7.619512 TCCCCAATAATACAACCAACTTTTT 57.380 32.000 0.00 0.00 0.00 1.94
2971 3196 5.914898 AGTACTTTGGTTTGTCTGCTTTT 57.085 34.783 0.00 0.00 0.00 2.27
2980 3205 8.339714 TCGTGAAAAGATAAGTACTTTGGTTTG 58.660 33.333 14.49 0.55 37.59 2.93
3043 3268 6.389091 TGAAACAATATGGACAACTTGATGC 58.611 36.000 0.00 0.00 0.00 3.91
3128 3353 1.160137 CCAGAAACCTGAAAGCTCGG 58.840 55.000 0.00 0.00 33.56 4.63
3167 3392 1.065564 AGCAATCTCTGTGAGGGCTTC 60.066 52.381 0.00 0.00 31.79 3.86
3173 3398 2.538437 CCTCGAAGCAATCTCTGTGAG 58.462 52.381 0.00 0.00 0.00 3.51
3200 3425 8.162746 GGAAATTCCATCTCTGAGGATTCTATT 58.837 37.037 7.23 0.00 36.28 1.73
3268 3493 4.641396 CAGGTCTTCCATACAGTGTGAAA 58.359 43.478 5.88 0.00 35.89 2.69
3415 3667 1.675310 TGAATCACTGGCAAGCCCG 60.675 57.895 8.89 4.63 35.87 6.13
3436 3688 3.281727 TCATTGGCAGGTCTTCCATAC 57.718 47.619 0.00 0.00 35.89 2.39
3469 3721 1.341383 GGTGGATCATTGGCTGGTCTT 60.341 52.381 0.00 0.00 35.17 3.01
3489 3741 3.824133 TCATTGGCTGGTCTTCCATATG 58.176 45.455 0.00 0.00 43.43 1.78
3496 3748 1.341383 GGTGGATCATTGGCTGGTCTT 60.341 52.381 0.00 0.00 35.17 3.01
3537 3789 2.290768 GCAGGTCTCCCATATGATGCAT 60.291 50.000 3.65 0.00 32.79 3.96
3538 3790 1.072806 GCAGGTCTCCCATATGATGCA 59.927 52.381 3.65 0.00 32.79 3.96
3539 3791 1.612726 GGCAGGTCTCCCATATGATGC 60.613 57.143 3.65 2.98 0.00 3.91
3540 3792 1.701292 TGGCAGGTCTCCCATATGATG 59.299 52.381 3.65 0.00 0.00 3.07
3541 3793 2.107204 GTTGGCAGGTCTCCCATATGAT 59.893 50.000 3.65 0.00 0.00 2.45
3542 3794 1.490490 GTTGGCAGGTCTCCCATATGA 59.510 52.381 3.65 0.00 0.00 2.15
3543 3795 1.811558 CGTTGGCAGGTCTCCCATATG 60.812 57.143 0.00 0.00 0.00 1.78
3544 3796 0.469917 CGTTGGCAGGTCTCCCATAT 59.530 55.000 0.00 0.00 0.00 1.78
3545 3797 0.616395 TCGTTGGCAGGTCTCCCATA 60.616 55.000 0.00 0.00 0.00 2.74
3546 3798 1.274703 ATCGTTGGCAGGTCTCCCAT 61.275 55.000 0.00 0.00 0.00 4.00
3547 3799 1.918293 ATCGTTGGCAGGTCTCCCA 60.918 57.895 0.00 0.00 0.00 4.37
3548 3800 1.450312 CATCGTTGGCAGGTCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
3549 3801 2.109126 GCATCGTTGGCAGGTCTCC 61.109 63.158 0.00 0.00 0.00 3.71
3550 3802 0.745845 ATGCATCGTTGGCAGGTCTC 60.746 55.000 0.00 0.00 45.68 3.36
3551 3803 0.745845 GATGCATCGTTGGCAGGTCT 60.746 55.000 11.68 0.00 45.68 3.85
3552 3804 1.026182 TGATGCATCGTTGGCAGGTC 61.026 55.000 21.34 0.00 45.68 3.85
3553 3805 0.394762 ATGATGCATCGTTGGCAGGT 60.395 50.000 21.34 0.00 45.68 4.00
3554 3806 1.596603 TATGATGCATCGTTGGCAGG 58.403 50.000 25.74 0.00 45.68 4.85
3555 3807 2.095415 CCATATGATGCATCGTTGGCAG 60.095 50.000 25.74 11.50 45.68 4.85
3556 3808 1.881324 CCATATGATGCATCGTTGGCA 59.119 47.619 25.74 9.07 46.66 4.92
3557 3809 1.200716 CCCATATGATGCATCGTTGGC 59.799 52.381 27.58 8.60 0.00 4.52
3558 3810 2.745821 CTCCCATATGATGCATCGTTGG 59.254 50.000 25.74 26.40 0.00 3.77
3559 3811 3.434641 GTCTCCCATATGATGCATCGTTG 59.565 47.826 25.74 20.60 0.00 4.10
3560 3812 3.557898 GGTCTCCCATATGATGCATCGTT 60.558 47.826 25.74 15.81 0.00 3.85
3561 3813 2.027745 GGTCTCCCATATGATGCATCGT 60.028 50.000 24.19 24.19 0.00 3.73
3562 3814 2.235650 AGGTCTCCCATATGATGCATCG 59.764 50.000 21.34 7.24 0.00 3.84
3563 3815 3.607741 CAGGTCTCCCATATGATGCATC 58.392 50.000 20.14 20.14 0.00 3.91
3569 3821 1.490490 GTTGGCAGGTCTCCCATATGA 59.510 52.381 3.65 0.00 0.00 2.15
3592 3844 0.839277 CAGGTCTCCCATATGGTGCA 59.161 55.000 20.46 3.24 34.77 4.57
3593 3845 0.536006 GCAGGTCTCCCATATGGTGC 60.536 60.000 20.46 17.33 34.77 5.01
3631 3883 4.770010 TCATGGGGTTTATTGTTTGGTCTC 59.230 41.667 0.00 0.00 0.00 3.36
3808 4060 5.629435 GTCATGATAAGAACGATGCGACATA 59.371 40.000 0.00 0.00 0.00 2.29
3868 4120 1.674962 CTTGAGAGGCCTAATTGCTGC 59.325 52.381 4.42 0.00 0.00 5.25
3931 4183 7.379529 GTGTAATCATAAGCATTGGAATTTCCG 59.620 37.037 10.79 0.00 40.17 4.30
4092 4344 2.961062 ACCTACGCAAACCTACGGATAT 59.039 45.455 0.00 0.00 0.00 1.63
4093 4345 2.378038 ACCTACGCAAACCTACGGATA 58.622 47.619 0.00 0.00 0.00 2.59
4094 4346 1.188863 ACCTACGCAAACCTACGGAT 58.811 50.000 0.00 0.00 0.00 4.18
4095 4347 0.968405 AACCTACGCAAACCTACGGA 59.032 50.000 0.00 0.00 0.00 4.69
4096 4348 2.652941 TAACCTACGCAAACCTACGG 57.347 50.000 0.00 0.00 0.00 4.02
4097 4349 4.736793 CAGTATAACCTACGCAAACCTACG 59.263 45.833 0.00 0.00 0.00 3.51
4098 4350 5.894807 TCAGTATAACCTACGCAAACCTAC 58.105 41.667 0.00 0.00 0.00 3.18
4099 4351 6.548622 AGATCAGTATAACCTACGCAAACCTA 59.451 38.462 0.00 0.00 0.00 3.08
4100 4352 5.363005 AGATCAGTATAACCTACGCAAACCT 59.637 40.000 0.00 0.00 0.00 3.50
4101 4353 5.462398 CAGATCAGTATAACCTACGCAAACC 59.538 44.000 0.00 0.00 0.00 3.27
4102 4354 5.050972 GCAGATCAGTATAACCTACGCAAAC 60.051 44.000 0.00 0.00 0.00 2.93
4103 4355 5.047847 GCAGATCAGTATAACCTACGCAAA 58.952 41.667 0.00 0.00 0.00 3.68
4104 4356 4.098807 TGCAGATCAGTATAACCTACGCAA 59.901 41.667 0.00 0.00 0.00 4.85
4105 4357 3.634910 TGCAGATCAGTATAACCTACGCA 59.365 43.478 0.00 0.00 0.00 5.24
4106 4358 4.238761 TGCAGATCAGTATAACCTACGC 57.761 45.455 0.00 0.00 0.00 4.42
4148 4400 6.288294 TCAACAAGTTATAGTGCACAGAAGT 58.712 36.000 21.04 9.56 0.00 3.01
4149 4401 6.785488 TCAACAAGTTATAGTGCACAGAAG 57.215 37.500 21.04 2.77 0.00 2.85
4150 4402 6.710295 ACATCAACAAGTTATAGTGCACAGAA 59.290 34.615 21.04 6.81 0.00 3.02
4151 4403 6.230472 ACATCAACAAGTTATAGTGCACAGA 58.770 36.000 21.04 6.79 0.00 3.41
4152 4404 6.486253 ACATCAACAAGTTATAGTGCACAG 57.514 37.500 21.04 0.62 0.00 3.66
4153 4405 6.484977 TGAACATCAACAAGTTATAGTGCACA 59.515 34.615 21.04 5.47 0.00 4.57
4154 4406 6.898041 TGAACATCAACAAGTTATAGTGCAC 58.102 36.000 9.40 9.40 0.00 4.57
4155 4407 7.686438 ATGAACATCAACAAGTTATAGTGCA 57.314 32.000 0.00 0.00 0.00 4.57
4156 4408 8.023128 ACAATGAACATCAACAAGTTATAGTGC 58.977 33.333 0.00 0.00 0.00 4.40
4157 4409 9.897744 AACAATGAACATCAACAAGTTATAGTG 57.102 29.630 0.00 0.00 0.00 2.74
4162 4414 9.868277 AAGAAAACAATGAACATCAACAAGTTA 57.132 25.926 0.00 0.00 0.00 2.24
4163 4415 8.658609 CAAGAAAACAATGAACATCAACAAGTT 58.341 29.630 0.00 0.00 0.00 2.66
4164 4416 8.034215 TCAAGAAAACAATGAACATCAACAAGT 58.966 29.630 0.00 0.00 0.00 3.16
4165 4417 8.410030 TCAAGAAAACAATGAACATCAACAAG 57.590 30.769 0.00 0.00 0.00 3.16
4166 4418 8.945481 ATCAAGAAAACAATGAACATCAACAA 57.055 26.923 0.00 0.00 0.00 2.83
4167 4419 8.819015 CAATCAAGAAAACAATGAACATCAACA 58.181 29.630 0.00 0.00 0.00 3.33
4168 4420 8.277713 CCAATCAAGAAAACAATGAACATCAAC 58.722 33.333 0.00 0.00 0.00 3.18
4179 4431 4.158764 ACCGTCAACCAATCAAGAAAACAA 59.841 37.500 0.00 0.00 0.00 2.83
4675 4927 3.773667 TCTTGCACCAGAGATCTGAGATT 59.226 43.478 11.44 0.00 46.59 2.40
4718 4970 0.618458 TGGATTCCGAAGAACCAGGG 59.382 55.000 0.00 0.00 33.97 4.45
4932 5184 3.009033 TCAACCTAGTTAATGTGGCAGCT 59.991 43.478 0.00 0.00 0.00 4.24
4984 5236 8.791327 AAATAACCAAAGCCCAGATTATTTTG 57.209 30.769 0.00 0.00 31.45 2.44
5153 5406 5.176958 ACTGTGTGAAGTTCGTAAATAGCAC 59.823 40.000 0.00 0.00 0.00 4.40
5163 5416 4.299155 AGTATGTGACTGTGTGAAGTTCG 58.701 43.478 0.00 0.00 36.87 3.95
5175 5428 7.619050 AGAAAATCAGATGTGAGTATGTGACT 58.381 34.615 0.00 0.00 42.90 3.41
5257 5510 7.018235 GCTGCTACAAACAGAATTCTAAGTTC 58.982 38.462 7.86 0.00 37.32 3.01
5282 5535 8.594687 GTGCAATAACCAATAACAGCTTAATTG 58.405 33.333 0.00 5.74 0.00 2.32
5598 6021 5.339200 GGAGAAAGGGTTCAAGATGATGGTA 60.339 44.000 0.00 0.00 36.09 3.25
5714 6151 0.747852 TTTTGCCTTTTCACCGGGTC 59.252 50.000 6.32 0.00 0.00 4.46
5718 6155 2.469826 GGTTCTTTTGCCTTTTCACCG 58.530 47.619 0.00 0.00 0.00 4.94
5849 6288 0.322906 GAGGAAAGGCCAAGGACCAG 60.323 60.000 5.01 0.00 40.02 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.