Multiple sequence alignment - TraesCS1A01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G164100 chr1A 100.000 2106 0 0 771 2876 295465819 295467924 0.000000e+00 3890.0
1 TraesCS1A01G164100 chr1A 100.000 425 0 0 1 425 295465049 295465473 0.000000e+00 785.0
2 TraesCS1A01G164100 chr1A 96.411 418 13 2 2460 2876 306629932 306630348 0.000000e+00 688.0
3 TraesCS1A01G164100 chr1A 96.411 418 13 2 2461 2876 469209449 469209032 0.000000e+00 688.0
4 TraesCS1A01G164100 chr1B 95.586 1699 68 6 771 2463 327487038 327488735 0.000000e+00 2715.0
5 TraesCS1A01G164100 chr1B 93.706 429 22 4 1 425 327486292 327486719 3.130000e-179 638.0
6 TraesCS1A01G164100 chr1D 95.179 1701 73 5 771 2463 227867073 227868772 0.000000e+00 2678.0
7 TraesCS1A01G164100 chr1D 94.660 1236 60 5 771 2001 208239549 208238315 0.000000e+00 1912.0
8 TraesCS1A01G164100 chr1D 96.574 467 15 1 1997 2463 208202666 208202201 0.000000e+00 773.0
9 TraesCS1A01G164100 chr1D 94.860 428 18 4 1 425 208240035 208239609 0.000000e+00 665.0
10 TraesCS1A01G164100 chr1D 94.186 430 14 7 1 425 227866304 227866727 0.000000e+00 645.0
11 TraesCS1A01G164100 chr5D 87.411 1676 207 4 792 2464 552444459 552442785 0.000000e+00 1923.0
12 TraesCS1A01G164100 chr5D 87.531 409 43 6 3 407 552445089 552444685 1.560000e-127 466.0
13 TraesCS1A01G164100 chr5D 73.641 368 82 14 1088 1449 552422797 552422439 8.360000e-26 128.0
14 TraesCS1A01G164100 chr5D 79.259 135 24 3 1058 1191 543503744 543503613 1.100000e-14 91.6
15 TraesCS1A01G164100 chr7A 96.860 414 11 2 2464 2876 147985538 147985126 0.000000e+00 691.0
16 TraesCS1A01G164100 chr7A 96.009 426 14 3 2454 2876 295273031 295272606 0.000000e+00 689.0
17 TraesCS1A01G164100 chr3A 96.860 414 12 1 2464 2876 633500720 633501133 0.000000e+00 691.0
18 TraesCS1A01G164100 chr2A 96.860 414 12 1 2464 2876 647796552 647796139 0.000000e+00 691.0
19 TraesCS1A01G164100 chr2A 96.635 416 13 1 2462 2876 24348977 24349392 0.000000e+00 689.0
20 TraesCS1A01G164100 chr6A 96.411 418 13 2 2460 2876 422238006 422237590 0.000000e+00 688.0
21 TraesCS1A01G164100 chr5A 96.190 420 15 1 2458 2876 306153473 306153892 0.000000e+00 686.0
22 TraesCS1A01G164100 chr4A 77.778 171 38 0 1116 1286 616897493 616897323 3.920000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G164100 chr1A 295465049 295467924 2875 False 2337.5 3890 100.0000 1 2876 2 chr1A.!!$F2 2875
1 TraesCS1A01G164100 chr1B 327486292 327488735 2443 False 1676.5 2715 94.6460 1 2463 2 chr1B.!!$F1 2462
2 TraesCS1A01G164100 chr1D 227866304 227868772 2468 False 1661.5 2678 94.6825 1 2463 2 chr1D.!!$F1 2462
3 TraesCS1A01G164100 chr1D 208238315 208240035 1720 True 1288.5 1912 94.7600 1 2001 2 chr1D.!!$R2 2000
4 TraesCS1A01G164100 chr5D 552442785 552445089 2304 True 1194.5 1923 87.4710 3 2464 2 chr5D.!!$R3 2461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 821 0.533085 GAGAGGCTACGGATTTGGGC 60.533 60.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2783 2818 0.028642 ATGGCCCCCAGGTCTATTCT 60.029 55.0 0.0 0.0 39.18 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 145 9.653287 TTACAAGAAAATGAGAGGTGTGTATAG 57.347 33.333 0.00 0.00 0.00 1.31
798 821 0.533085 GAGAGGCTACGGATTTGGGC 60.533 60.000 0.00 0.00 0.00 5.36
819 842 1.865970 CTGCGAGATGGCTCAAGAATC 59.134 52.381 0.00 0.00 41.36 2.52
826 849 5.275067 AGATGGCTCAAGAATCTGAGTAC 57.725 43.478 10.02 0.00 44.04 2.73
904 929 6.817765 TTGGTATGGATTTGTTGTTCTCTC 57.182 37.500 0.00 0.00 0.00 3.20
911 936 7.244886 TGGATTTGTTGTTCTCTCTATCTGA 57.755 36.000 0.00 0.00 0.00 3.27
982 1007 1.985116 GAGAGCAACCCCCTCTCGT 60.985 63.158 3.02 0.00 43.98 4.18
1247 1272 1.195115 AACTTCCAGAGCCGCTATCA 58.805 50.000 0.00 0.00 0.00 2.15
1251 1276 1.485124 TCCAGAGCCGCTATCAAGAA 58.515 50.000 0.00 0.00 0.00 2.52
1259 1284 2.880890 GCCGCTATCAAGAATTCCATGT 59.119 45.455 0.65 0.00 0.00 3.21
1262 1287 5.300752 CCGCTATCAAGAATTCCATGTAGT 58.699 41.667 0.65 0.00 0.00 2.73
1272 1297 5.194537 AGAATTCCATGTAGTTCTCCCCATT 59.805 40.000 0.65 0.00 0.00 3.16
1416 1444 6.042093 AGTCGAAGTATGATGTATGGGATTGT 59.958 38.462 0.00 0.00 0.00 2.71
1550 1578 2.049802 CGACAACCGTGTAGCCGT 60.050 61.111 0.00 0.00 38.41 5.68
1569 1597 2.224079 CGTTGTGCTTTGTGCTATGACT 59.776 45.455 0.00 0.00 43.37 3.41
1585 1613 2.347114 CTGGATGTGACCACCGCA 59.653 61.111 0.00 0.00 39.93 5.69
1833 1866 1.144936 CCCAGGCTCATCGAAGACC 59.855 63.158 0.00 0.00 42.51 3.85
1914 1947 6.232581 ACTTGAGCTCTAGTTGCTTATCAT 57.767 37.500 22.83 0.00 41.30 2.45
1979 2012 2.123018 TACTCATGGCCATGGAGGAT 57.877 50.000 38.81 23.74 41.22 3.24
2076 2110 2.159653 GCATCATGGACTCAACGAACAC 60.160 50.000 0.00 0.00 0.00 3.32
2107 2141 2.092321 TCAAAAACCTTCTCCCCGTTCA 60.092 45.455 0.00 0.00 0.00 3.18
2111 2145 1.977056 ACCTTCTCCCCGTTCAAAAC 58.023 50.000 0.00 0.00 0.00 2.43
2259 2293 4.023739 AGTTTACGTGCTTTGTTTCCAC 57.976 40.909 0.00 0.00 0.00 4.02
2464 2499 7.773864 TTGGAAATTTGCATATTAGCATGTG 57.226 32.000 13.51 0.00 45.19 3.21
2465 2500 5.754406 TGGAAATTTGCATATTAGCATGTGC 59.246 36.000 8.47 0.00 45.44 4.57
2477 2512 1.012841 GCATGTGCTACCTCTTGAGC 58.987 55.000 0.00 0.00 39.25 4.26
2478 2513 1.676916 GCATGTGCTACCTCTTGAGCA 60.677 52.381 0.00 0.00 46.24 4.26
2482 2517 0.036952 TGCTACCTCTTGAGCACTGC 60.037 55.000 0.00 0.00 43.64 4.40
2483 2518 1.080995 GCTACCTCTTGAGCACTGCG 61.081 60.000 0.00 0.00 38.62 5.18
2484 2519 0.244994 CTACCTCTTGAGCACTGCGT 59.755 55.000 0.00 0.00 0.00 5.24
2485 2520 0.679505 TACCTCTTGAGCACTGCGTT 59.320 50.000 0.00 0.00 0.00 4.84
2486 2521 0.882042 ACCTCTTGAGCACTGCGTTG 60.882 55.000 0.00 0.00 0.00 4.10
2487 2522 1.572085 CCTCTTGAGCACTGCGTTGG 61.572 60.000 0.00 0.00 0.00 3.77
2488 2523 0.882042 CTCTTGAGCACTGCGTTGGT 60.882 55.000 0.00 0.00 0.00 3.67
2489 2524 0.463654 TCTTGAGCACTGCGTTGGTT 60.464 50.000 0.00 0.00 0.00 3.67
2490 2525 0.381801 CTTGAGCACTGCGTTGGTTT 59.618 50.000 0.00 0.00 0.00 3.27
2491 2526 0.814457 TTGAGCACTGCGTTGGTTTT 59.186 45.000 0.00 0.00 0.00 2.43
2492 2527 0.380378 TGAGCACTGCGTTGGTTTTC 59.620 50.000 0.00 0.00 0.00 2.29
2493 2528 0.317854 GAGCACTGCGTTGGTTTTCC 60.318 55.000 0.00 0.00 41.14 3.13
2494 2529 1.299850 GCACTGCGTTGGTTTTCCC 60.300 57.895 0.00 0.00 39.73 3.97
2495 2530 1.734388 GCACTGCGTTGGTTTTCCCT 61.734 55.000 0.00 0.00 39.73 4.20
2496 2531 0.744281 CACTGCGTTGGTTTTCCCTT 59.256 50.000 0.00 0.00 39.73 3.95
2497 2532 1.950909 CACTGCGTTGGTTTTCCCTTA 59.049 47.619 0.00 0.00 39.73 2.69
2498 2533 2.359531 CACTGCGTTGGTTTTCCCTTAA 59.640 45.455 0.00 0.00 39.73 1.85
2499 2534 3.025262 ACTGCGTTGGTTTTCCCTTAAA 58.975 40.909 0.00 0.00 39.73 1.52
2500 2535 3.067601 ACTGCGTTGGTTTTCCCTTAAAG 59.932 43.478 0.00 0.00 39.73 1.85
2501 2536 3.288964 TGCGTTGGTTTTCCCTTAAAGA 58.711 40.909 0.00 0.00 39.73 2.52
2502 2537 3.316868 TGCGTTGGTTTTCCCTTAAAGAG 59.683 43.478 0.00 0.00 39.73 2.85
2503 2538 3.305131 GCGTTGGTTTTCCCTTAAAGAGG 60.305 47.826 0.00 0.00 45.86 3.69
2515 2550 2.579410 TAAAGAGGAAAGGGTGGTGC 57.421 50.000 0.00 0.00 0.00 5.01
2516 2551 0.555769 AAAGAGGAAAGGGTGGTGCA 59.444 50.000 0.00 0.00 0.00 4.57
2517 2552 0.111253 AAGAGGAAAGGGTGGTGCAG 59.889 55.000 0.00 0.00 0.00 4.41
2518 2553 1.062488 AGAGGAAAGGGTGGTGCAGT 61.062 55.000 0.00 0.00 0.00 4.40
2519 2554 0.690762 GAGGAAAGGGTGGTGCAGTA 59.309 55.000 0.00 0.00 0.00 2.74
2520 2555 1.073284 GAGGAAAGGGTGGTGCAGTAA 59.927 52.381 0.00 0.00 0.00 2.24
2521 2556 1.497286 AGGAAAGGGTGGTGCAGTAAA 59.503 47.619 0.00 0.00 0.00 2.01
2522 2557 1.886542 GGAAAGGGTGGTGCAGTAAAG 59.113 52.381 0.00 0.00 0.00 1.85
2523 2558 1.269723 GAAAGGGTGGTGCAGTAAAGC 59.730 52.381 0.00 0.00 0.00 3.51
2524 2559 0.184933 AAGGGTGGTGCAGTAAAGCA 59.815 50.000 0.00 0.00 43.35 3.91
2548 2583 5.868043 CGTAAGTATTTCCCTCGGTTTTT 57.132 39.130 0.00 0.00 0.00 1.94
2549 2584 5.624292 CGTAAGTATTTCCCTCGGTTTTTG 58.376 41.667 0.00 0.00 0.00 2.44
2550 2585 5.409214 CGTAAGTATTTCCCTCGGTTTTTGA 59.591 40.000 0.00 0.00 0.00 2.69
2551 2586 5.959618 AAGTATTTCCCTCGGTTTTTGAG 57.040 39.130 0.00 0.00 0.00 3.02
2552 2587 5.237236 AGTATTTCCCTCGGTTTTTGAGA 57.763 39.130 0.00 0.00 35.43 3.27
2553 2588 5.627135 AGTATTTCCCTCGGTTTTTGAGAA 58.373 37.500 0.00 0.00 35.43 2.87
2554 2589 4.848562 ATTTCCCTCGGTTTTTGAGAAC 57.151 40.909 0.00 0.00 35.43 3.01
2555 2590 2.265589 TCCCTCGGTTTTTGAGAACC 57.734 50.000 0.00 0.00 44.51 3.62
2559 2594 2.293399 CCTCGGTTTTTGAGAACCAAGG 59.707 50.000 7.48 3.77 44.94 3.61
2560 2595 4.247224 CCTCGGTTTTTGAGAACCAAGGT 61.247 47.826 5.76 0.00 45.11 3.50
2561 2596 4.984874 CCTCGGTTTTTGAGAACCAAGGTA 60.985 45.833 5.76 0.00 45.11 3.08
2562 2597 6.265402 CCTCGGTTTTTGAGAACCAAGGTAT 61.265 44.000 5.76 0.00 45.11 2.73
2563 2598 8.003046 CCTCGGTTTTTGAGAACCAAGGTATC 62.003 46.154 5.76 0.00 45.11 2.24
2565 2600 6.399639 GGTTTTTGAGAACCAAGGTATCAA 57.600 37.500 13.02 13.02 46.66 2.57
2566 2601 6.993079 GGTTTTTGAGAACCAAGGTATCAAT 58.007 36.000 16.11 0.00 46.66 2.57
2567 2602 7.090808 GGTTTTTGAGAACCAAGGTATCAATC 58.909 38.462 16.11 11.41 46.66 2.67
2568 2603 7.039714 GGTTTTTGAGAACCAAGGTATCAATCT 60.040 37.037 16.11 5.61 46.66 2.40
2569 2604 9.010029 GTTTTTGAGAACCAAGGTATCAATCTA 57.990 33.333 16.11 4.28 35.41 1.98
2570 2605 8.792830 TTTTGAGAACCAAGGTATCAATCTAG 57.207 34.615 16.11 0.00 35.41 2.43
2571 2606 7.496346 TTGAGAACCAAGGTATCAATCTAGT 57.504 36.000 13.02 0.00 32.60 2.57
2572 2607 8.603898 TTGAGAACCAAGGTATCAATCTAGTA 57.396 34.615 13.02 0.00 32.60 1.82
2573 2608 8.239038 TGAGAACCAAGGTATCAATCTAGTAG 57.761 38.462 4.99 0.00 0.00 2.57
2574 2609 7.287927 TGAGAACCAAGGTATCAATCTAGTAGG 59.712 40.741 0.00 0.00 0.00 3.18
2575 2610 7.363031 AGAACCAAGGTATCAATCTAGTAGGA 58.637 38.462 0.00 0.00 0.00 2.94
2576 2611 7.507616 AGAACCAAGGTATCAATCTAGTAGGAG 59.492 40.741 0.00 0.00 0.00 3.69
2577 2612 6.923670 ACCAAGGTATCAATCTAGTAGGAGA 58.076 40.000 0.00 0.00 0.00 3.71
2578 2613 6.778559 ACCAAGGTATCAATCTAGTAGGAGAC 59.221 42.308 0.00 0.00 0.00 3.36
2579 2614 6.209788 CCAAGGTATCAATCTAGTAGGAGACC 59.790 46.154 9.49 9.49 40.91 3.85
2580 2615 6.532119 AGGTATCAATCTAGTAGGAGACCA 57.468 41.667 16.35 0.00 42.56 4.02
2581 2616 6.308566 AGGTATCAATCTAGTAGGAGACCAC 58.691 44.000 16.35 6.83 42.56 4.16
2582 2617 5.181622 GGTATCAATCTAGTAGGAGACCACG 59.818 48.000 11.62 0.00 40.45 4.94
2583 2618 2.950309 TCAATCTAGTAGGAGACCACGC 59.050 50.000 0.00 0.00 0.00 5.34
2584 2619 1.595466 ATCTAGTAGGAGACCACGCG 58.405 55.000 3.53 3.53 0.00 6.01
2585 2620 1.094073 TCTAGTAGGAGACCACGCGC 61.094 60.000 5.73 0.00 0.00 6.86
2586 2621 2.376231 CTAGTAGGAGACCACGCGCG 62.376 65.000 30.96 30.96 0.00 6.86
2587 2622 2.857575 TAGTAGGAGACCACGCGCGA 62.858 60.000 39.36 7.53 0.00 5.87
2588 2623 3.506096 TAGGAGACCACGCGCGAG 61.506 66.667 39.36 29.72 0.00 5.03
2591 2626 4.400109 GAGACCACGCGCGAGTCA 62.400 66.667 38.31 0.00 32.82 3.41
2592 2627 4.702081 AGACCACGCGCGAGTCAC 62.702 66.667 38.31 24.59 32.82 3.67
2606 2641 2.430465 GAGTCACCTCGTACCTACACA 58.570 52.381 0.00 0.00 0.00 3.72
2607 2642 2.816087 GAGTCACCTCGTACCTACACAA 59.184 50.000 0.00 0.00 0.00 3.33
2608 2643 3.225104 AGTCACCTCGTACCTACACAAA 58.775 45.455 0.00 0.00 0.00 2.83
2609 2644 3.005155 AGTCACCTCGTACCTACACAAAC 59.995 47.826 0.00 0.00 0.00 2.93
2610 2645 2.957680 TCACCTCGTACCTACACAAACA 59.042 45.455 0.00 0.00 0.00 2.83
2611 2646 3.384146 TCACCTCGTACCTACACAAACAA 59.616 43.478 0.00 0.00 0.00 2.83
2612 2647 4.121317 CACCTCGTACCTACACAAACAAA 58.879 43.478 0.00 0.00 0.00 2.83
2613 2648 4.753107 CACCTCGTACCTACACAAACAAAT 59.247 41.667 0.00 0.00 0.00 2.32
2614 2649 5.927689 CACCTCGTACCTACACAAACAAATA 59.072 40.000 0.00 0.00 0.00 1.40
2615 2650 6.424509 CACCTCGTACCTACACAAACAAATAA 59.575 38.462 0.00 0.00 0.00 1.40
2616 2651 6.647895 ACCTCGTACCTACACAAACAAATAAG 59.352 38.462 0.00 0.00 0.00 1.73
2617 2652 6.869913 CCTCGTACCTACACAAACAAATAAGA 59.130 38.462 0.00 0.00 0.00 2.10
2618 2653 7.385752 CCTCGTACCTACACAAACAAATAAGAA 59.614 37.037 0.00 0.00 0.00 2.52
2619 2654 8.075593 TCGTACCTACACAAACAAATAAGAAC 57.924 34.615 0.00 0.00 0.00 3.01
2620 2655 7.171337 TCGTACCTACACAAACAAATAAGAACC 59.829 37.037 0.00 0.00 0.00 3.62
2621 2656 7.172019 CGTACCTACACAAACAAATAAGAACCT 59.828 37.037 0.00 0.00 0.00 3.50
2622 2657 7.506328 ACCTACACAAACAAATAAGAACCTC 57.494 36.000 0.00 0.00 0.00 3.85
2623 2658 6.204108 ACCTACACAAACAAATAAGAACCTCG 59.796 38.462 0.00 0.00 0.00 4.63
2624 2659 4.855531 ACACAAACAAATAAGAACCTCGC 58.144 39.130 0.00 0.00 0.00 5.03
2625 2660 4.336993 ACACAAACAAATAAGAACCTCGCA 59.663 37.500 0.00 0.00 0.00 5.10
2626 2661 5.163602 ACACAAACAAATAAGAACCTCGCAA 60.164 36.000 0.00 0.00 0.00 4.85
2627 2662 5.173131 CACAAACAAATAAGAACCTCGCAAC 59.827 40.000 0.00 0.00 0.00 4.17
2628 2663 4.499037 AACAAATAAGAACCTCGCAACC 57.501 40.909 0.00 0.00 0.00 3.77
2629 2664 3.482436 ACAAATAAGAACCTCGCAACCA 58.518 40.909 0.00 0.00 0.00 3.67
2630 2665 3.886505 ACAAATAAGAACCTCGCAACCAA 59.113 39.130 0.00 0.00 0.00 3.67
2631 2666 4.226761 CAAATAAGAACCTCGCAACCAAC 58.773 43.478 0.00 0.00 0.00 3.77
2632 2667 1.504359 TAAGAACCTCGCAACCAACG 58.496 50.000 0.00 0.00 0.00 4.10
2633 2668 1.782028 AAGAACCTCGCAACCAACGC 61.782 55.000 0.00 0.00 0.00 4.84
2641 2676 3.306206 GCAACCAACGCGATAAAGG 57.694 52.632 15.93 9.35 0.00 3.11
2642 2677 0.179174 GCAACCAACGCGATAAAGGG 60.179 55.000 15.93 7.02 0.00 3.95
2643 2678 1.161843 CAACCAACGCGATAAAGGGT 58.838 50.000 15.93 7.72 39.03 4.34
2644 2679 1.538075 CAACCAACGCGATAAAGGGTT 59.462 47.619 15.93 13.50 46.11 4.11
2648 2683 2.172851 AACGCGATAAAGGGTTGTCA 57.827 45.000 15.93 0.00 44.01 3.58
2649 2684 2.172851 ACGCGATAAAGGGTTGTCAA 57.827 45.000 15.93 0.00 33.28 3.18
2650 2685 2.706890 ACGCGATAAAGGGTTGTCAAT 58.293 42.857 15.93 0.00 33.28 2.57
2651 2686 2.676342 ACGCGATAAAGGGTTGTCAATC 59.324 45.455 15.93 0.00 33.28 2.67
2652 2687 2.031683 CGCGATAAAGGGTTGTCAATCC 59.968 50.000 6.78 6.78 0.00 3.01
2653 2688 2.357952 GCGATAAAGGGTTGTCAATCCC 59.642 50.000 11.48 12.24 43.71 3.85
2659 2694 1.165270 GGGTTGTCAATCCCTTCACG 58.835 55.000 3.15 0.00 40.48 4.35
2660 2695 1.271163 GGGTTGTCAATCCCTTCACGA 60.271 52.381 3.15 0.00 40.48 4.35
2661 2696 1.804748 GGTTGTCAATCCCTTCACGAC 59.195 52.381 0.00 0.00 0.00 4.34
2662 2697 1.804748 GTTGTCAATCCCTTCACGACC 59.195 52.381 0.00 0.00 0.00 4.79
2663 2698 1.052617 TGTCAATCCCTTCACGACCA 58.947 50.000 0.00 0.00 0.00 4.02
2664 2699 1.270625 TGTCAATCCCTTCACGACCAC 60.271 52.381 0.00 0.00 0.00 4.16
2665 2700 1.002087 GTCAATCCCTTCACGACCACT 59.998 52.381 0.00 0.00 0.00 4.00
2666 2701 1.697432 TCAATCCCTTCACGACCACTT 59.303 47.619 0.00 0.00 0.00 3.16
2667 2702 1.806542 CAATCCCTTCACGACCACTTG 59.193 52.381 0.00 0.00 0.00 3.16
2668 2703 0.321653 ATCCCTTCACGACCACTTGC 60.322 55.000 0.00 0.00 0.00 4.01
2669 2704 1.227823 CCCTTCACGACCACTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
2670 2705 0.817634 CCCTTCACGACCACTTGCAA 60.818 55.000 0.00 0.00 0.00 4.08
2671 2706 0.588252 CCTTCACGACCACTTGCAAG 59.412 55.000 24.84 24.84 0.00 4.01
2672 2707 1.581934 CTTCACGACCACTTGCAAGA 58.418 50.000 32.50 4.98 0.00 3.02
2673 2708 1.528586 CTTCACGACCACTTGCAAGAG 59.471 52.381 32.50 24.08 0.00 2.85
2674 2709 0.464036 TCACGACCACTTGCAAGAGT 59.536 50.000 32.50 26.21 0.00 3.24
2675 2710 0.583438 CACGACCACTTGCAAGAGTG 59.417 55.000 32.50 24.52 45.19 3.51
2684 2719 4.822685 ACTTGCAAGAGTGAGATCTGAT 57.177 40.909 32.50 2.30 0.00 2.90
2685 2720 5.929058 ACTTGCAAGAGTGAGATCTGATA 57.071 39.130 32.50 0.00 0.00 2.15
2686 2721 5.904941 ACTTGCAAGAGTGAGATCTGATAG 58.095 41.667 32.50 0.61 0.00 2.08
2687 2722 5.655974 ACTTGCAAGAGTGAGATCTGATAGA 59.344 40.000 32.50 0.00 0.00 1.98
2688 2723 5.771153 TGCAAGAGTGAGATCTGATAGAG 57.229 43.478 0.00 0.00 0.00 2.43
2689 2724 5.444176 TGCAAGAGTGAGATCTGATAGAGA 58.556 41.667 0.00 0.00 34.25 3.10
2690 2725 6.069994 TGCAAGAGTGAGATCTGATAGAGAT 58.930 40.000 0.00 0.00 44.78 2.75
2691 2726 7.230027 TGCAAGAGTGAGATCTGATAGAGATA 58.770 38.462 0.00 0.00 41.91 1.98
2692 2727 7.723172 TGCAAGAGTGAGATCTGATAGAGATAA 59.277 37.037 0.00 0.00 41.91 1.75
2693 2728 8.742777 GCAAGAGTGAGATCTGATAGAGATAAT 58.257 37.037 0.00 0.00 41.91 1.28
2783 2818 9.699410 AAATAGATTGGAAACTTGTATGATGGA 57.301 29.630 0.00 0.00 0.00 3.41
2784 2819 8.915057 ATAGATTGGAAACTTGTATGATGGAG 57.085 34.615 0.00 0.00 0.00 3.86
2785 2820 6.962182 AGATTGGAAACTTGTATGATGGAGA 58.038 36.000 0.00 0.00 0.00 3.71
2786 2821 7.405292 AGATTGGAAACTTGTATGATGGAGAA 58.595 34.615 0.00 0.00 0.00 2.87
2787 2822 8.057623 AGATTGGAAACTTGTATGATGGAGAAT 58.942 33.333 0.00 0.00 0.00 2.40
2788 2823 9.342308 GATTGGAAACTTGTATGATGGAGAATA 57.658 33.333 0.00 0.00 0.00 1.75
2789 2824 8.737168 TTGGAAACTTGTATGATGGAGAATAG 57.263 34.615 0.00 0.00 0.00 1.73
2790 2825 8.089625 TGGAAACTTGTATGATGGAGAATAGA 57.910 34.615 0.00 0.00 0.00 1.98
2791 2826 7.987458 TGGAAACTTGTATGATGGAGAATAGAC 59.013 37.037 0.00 0.00 0.00 2.59
2792 2827 7.442666 GGAAACTTGTATGATGGAGAATAGACC 59.557 40.741 0.00 0.00 0.00 3.85
2793 2828 7.682787 AACTTGTATGATGGAGAATAGACCT 57.317 36.000 0.00 0.00 0.00 3.85
2794 2829 7.060383 ACTTGTATGATGGAGAATAGACCTG 57.940 40.000 0.00 0.00 0.00 4.00
2795 2830 6.042552 ACTTGTATGATGGAGAATAGACCTGG 59.957 42.308 0.00 0.00 0.00 4.45
2796 2831 4.840680 TGTATGATGGAGAATAGACCTGGG 59.159 45.833 0.00 0.00 0.00 4.45
2797 2832 2.694397 TGATGGAGAATAGACCTGGGG 58.306 52.381 0.00 0.00 0.00 4.96
2798 2833 1.981495 GATGGAGAATAGACCTGGGGG 59.019 57.143 0.00 0.00 38.88 5.40
2799 2834 0.694444 TGGAGAATAGACCTGGGGGC 60.694 60.000 0.00 0.00 35.63 5.80
2800 2835 1.419720 GGAGAATAGACCTGGGGGCC 61.420 65.000 0.00 0.00 35.63 5.80
2801 2836 0.694444 GAGAATAGACCTGGGGGCCA 60.694 60.000 4.39 0.00 35.63 5.36
2802 2837 0.028642 AGAATAGACCTGGGGGCCAT 60.029 55.000 4.39 0.00 35.63 4.40
2803 2838 1.225694 AGAATAGACCTGGGGGCCATA 59.774 52.381 4.39 0.00 35.63 2.74
2804 2839 1.630878 GAATAGACCTGGGGGCCATAG 59.369 57.143 4.39 2.07 35.63 2.23
2805 2840 0.178861 ATAGACCTGGGGGCCATAGG 60.179 60.000 20.17 20.17 37.61 2.57
2807 2842 2.006991 GACCTGGGGGCCATAGGTT 61.007 63.158 25.85 13.70 44.51 3.50
2808 2843 1.546460 ACCTGGGGGCCATAGGTTT 60.546 57.895 21.34 4.27 41.93 3.27
2809 2844 1.230212 CCTGGGGGCCATAGGTTTC 59.770 63.158 15.17 0.00 30.82 2.78
2810 2845 1.580066 CCTGGGGGCCATAGGTTTCA 61.580 60.000 15.17 0.00 30.82 2.69
2811 2846 0.395724 CTGGGGGCCATAGGTTTCAC 60.396 60.000 4.39 0.00 30.82 3.18
2812 2847 0.849094 TGGGGGCCATAGGTTTCACT 60.849 55.000 4.39 0.00 0.00 3.41
2813 2848 1.218844 GGGGGCCATAGGTTTCACTA 58.781 55.000 4.39 0.00 0.00 2.74
2814 2849 1.143073 GGGGGCCATAGGTTTCACTAG 59.857 57.143 4.39 0.00 0.00 2.57
2815 2850 1.844497 GGGGCCATAGGTTTCACTAGT 59.156 52.381 4.39 0.00 0.00 2.57
2816 2851 2.421529 GGGGCCATAGGTTTCACTAGTG 60.422 54.545 17.17 17.17 0.00 2.74
2817 2852 2.421529 GGGCCATAGGTTTCACTAGTGG 60.422 54.545 22.48 4.49 0.00 4.00
2818 2853 2.289565 GCCATAGGTTTCACTAGTGGC 58.710 52.381 22.48 10.96 38.82 5.01
2819 2854 2.092914 GCCATAGGTTTCACTAGTGGCT 60.093 50.000 22.48 6.62 40.50 4.75
2820 2855 3.622455 GCCATAGGTTTCACTAGTGGCTT 60.622 47.826 22.48 11.79 40.50 4.35
2821 2856 4.192317 CCATAGGTTTCACTAGTGGCTTC 58.808 47.826 22.48 10.36 0.00 3.86
2822 2857 4.080863 CCATAGGTTTCACTAGTGGCTTCT 60.081 45.833 22.48 16.20 0.00 2.85
2823 2858 5.491982 CATAGGTTTCACTAGTGGCTTCTT 58.508 41.667 22.48 9.77 0.00 2.52
2824 2859 4.439253 AGGTTTCACTAGTGGCTTCTTT 57.561 40.909 22.48 0.79 0.00 2.52
2825 2860 4.390264 AGGTTTCACTAGTGGCTTCTTTC 58.610 43.478 22.48 5.24 0.00 2.62
2826 2861 4.134563 GGTTTCACTAGTGGCTTCTTTCA 58.865 43.478 22.48 0.00 0.00 2.69
2827 2862 4.578928 GGTTTCACTAGTGGCTTCTTTCAA 59.421 41.667 22.48 3.51 0.00 2.69
2828 2863 5.278022 GGTTTCACTAGTGGCTTCTTTCAAG 60.278 44.000 22.48 0.00 0.00 3.02
2829 2864 4.955811 TCACTAGTGGCTTCTTTCAAGA 57.044 40.909 22.48 0.00 0.00 3.02
2830 2865 5.489792 TCACTAGTGGCTTCTTTCAAGAT 57.510 39.130 22.48 0.00 34.49 2.40
2831 2866 6.605471 TCACTAGTGGCTTCTTTCAAGATA 57.395 37.500 22.48 0.00 34.49 1.98
2832 2867 6.634805 TCACTAGTGGCTTCTTTCAAGATAG 58.365 40.000 22.48 0.00 34.49 2.08
2833 2868 5.293079 CACTAGTGGCTTCTTTCAAGATAGC 59.707 44.000 15.49 11.96 37.90 2.97
2834 2869 4.292186 AGTGGCTTCTTTCAAGATAGCA 57.708 40.909 17.78 7.93 39.12 3.49
2835 2870 4.853007 AGTGGCTTCTTTCAAGATAGCAT 58.147 39.130 17.78 7.30 39.12 3.79
2836 2871 5.994250 AGTGGCTTCTTTCAAGATAGCATA 58.006 37.500 17.78 9.11 39.12 3.14
2837 2872 6.418101 AGTGGCTTCTTTCAAGATAGCATAA 58.582 36.000 17.78 7.12 39.12 1.90
2838 2873 6.541641 AGTGGCTTCTTTCAAGATAGCATAAG 59.458 38.462 17.78 3.32 39.12 1.73
2839 2874 6.317391 GTGGCTTCTTTCAAGATAGCATAAGT 59.683 38.462 17.78 0.00 39.12 2.24
2840 2875 7.495934 GTGGCTTCTTTCAAGATAGCATAAGTA 59.504 37.037 17.78 0.00 39.12 2.24
2841 2876 8.213679 TGGCTTCTTTCAAGATAGCATAAGTAT 58.786 33.333 17.78 0.00 39.12 2.12
2842 2877 9.061435 GGCTTCTTTCAAGATAGCATAAGTATT 57.939 33.333 17.78 0.00 39.12 1.89
2849 2884 9.778741 TTCAAGATAGCATAAGTATTAAGGTGG 57.221 33.333 0.00 0.00 31.96 4.61
2850 2885 8.375506 TCAAGATAGCATAAGTATTAAGGTGGG 58.624 37.037 0.00 0.00 31.96 4.61
2851 2886 7.873699 AGATAGCATAAGTATTAAGGTGGGT 57.126 36.000 0.00 0.00 31.96 4.51
2852 2887 7.680730 AGATAGCATAAGTATTAAGGTGGGTG 58.319 38.462 0.00 0.00 31.96 4.61
2853 2888 5.968676 AGCATAAGTATTAAGGTGGGTGA 57.031 39.130 0.00 0.00 32.17 4.02
2854 2889 6.321821 AGCATAAGTATTAAGGTGGGTGAA 57.678 37.500 0.00 0.00 32.17 3.18
2855 2890 6.120220 AGCATAAGTATTAAGGTGGGTGAAC 58.880 40.000 0.00 0.00 32.17 3.18
2856 2891 5.883673 GCATAAGTATTAAGGTGGGTGAACA 59.116 40.000 0.00 0.00 32.17 3.18
2857 2892 6.376018 GCATAAGTATTAAGGTGGGTGAACAA 59.624 38.462 0.00 0.00 32.17 2.83
2858 2893 7.094118 GCATAAGTATTAAGGTGGGTGAACAAA 60.094 37.037 0.00 0.00 32.17 2.83
2859 2894 8.966868 CATAAGTATTAAGGTGGGTGAACAAAT 58.033 33.333 0.00 0.00 32.17 2.32
2860 2895 7.849322 AAGTATTAAGGTGGGTGAACAAATT 57.151 32.000 0.00 0.00 0.00 1.82
2861 2896 8.943594 AAGTATTAAGGTGGGTGAACAAATTA 57.056 30.769 0.00 0.00 0.00 1.40
2862 2897 8.344446 AGTATTAAGGTGGGTGAACAAATTAC 57.656 34.615 0.00 0.00 0.00 1.89
2863 2898 8.168058 AGTATTAAGGTGGGTGAACAAATTACT 58.832 33.333 0.00 0.00 0.00 2.24
2864 2899 6.642707 TTAAGGTGGGTGAACAAATTACTG 57.357 37.500 0.00 0.00 0.00 2.74
2865 2900 4.178956 AGGTGGGTGAACAAATTACTGT 57.821 40.909 0.00 0.00 0.00 3.55
2866 2901 4.142038 AGGTGGGTGAACAAATTACTGTC 58.858 43.478 0.00 0.00 0.00 3.51
2867 2902 3.058501 GGTGGGTGAACAAATTACTGTCG 60.059 47.826 0.00 0.00 0.00 4.35
2868 2903 3.810941 GTGGGTGAACAAATTACTGTCGA 59.189 43.478 0.00 0.00 0.00 4.20
2869 2904 4.062293 TGGGTGAACAAATTACTGTCGAG 58.938 43.478 0.00 0.00 0.00 4.04
2870 2905 3.120304 GGGTGAACAAATTACTGTCGAGC 60.120 47.826 0.00 0.00 0.00 5.03
2871 2906 3.496884 GGTGAACAAATTACTGTCGAGCA 59.503 43.478 0.00 0.00 0.00 4.26
2872 2907 4.024387 GGTGAACAAATTACTGTCGAGCAA 60.024 41.667 0.00 0.00 0.00 3.91
2873 2908 5.334879 GGTGAACAAATTACTGTCGAGCAAT 60.335 40.000 0.00 0.00 0.00 3.56
2874 2909 6.142817 GTGAACAAATTACTGTCGAGCAATT 58.857 36.000 0.00 0.00 0.00 2.32
2875 2910 6.086765 GTGAACAAATTACTGTCGAGCAATTG 59.913 38.462 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.733620 ACTGCAATTGAATCTCATTTGGT 57.266 34.783 10.34 0.00 37.87 3.67
100 102 0.388659 TGTAACCGGTAGTTGTGCGT 59.611 50.000 8.00 0.00 39.67 5.24
101 103 1.458064 CTTGTAACCGGTAGTTGTGCG 59.542 52.381 8.00 0.00 39.67 5.34
788 803 2.947938 ATCTCGCAGGCCCAAATCCG 62.948 60.000 0.00 0.00 0.00 4.18
798 821 0.107993 TTCTTGAGCCATCTCGCAGG 60.108 55.000 0.00 0.00 42.26 4.85
948 973 2.866460 GCTCTCGTTGTTGGCTTGTAGA 60.866 50.000 0.00 0.00 0.00 2.59
982 1007 0.986019 ATATGGGGTCGGAGTGGCAA 60.986 55.000 0.00 0.00 0.00 4.52
1247 1272 4.540099 TGGGGAGAACTACATGGAATTCTT 59.460 41.667 2.59 0.00 31.58 2.52
1251 1276 5.472301 AAATGGGGAGAACTACATGGAAT 57.528 39.130 0.00 0.00 0.00 3.01
1272 1297 7.609918 TCGATCTGATTACAAAAGAATCCCAAA 59.390 33.333 0.00 0.00 33.18 3.28
1313 1338 4.098807 GTGATACAGGTTCTTCCTCCTCTC 59.901 50.000 0.00 0.00 46.24 3.20
1314 1339 4.027437 GTGATACAGGTTCTTCCTCCTCT 58.973 47.826 0.00 0.00 46.24 3.69
1461 1489 3.089284 GGGGTTCCGAATGATGAACTTT 58.911 45.455 0.00 0.00 40.50 2.66
1569 1597 1.302431 CTTGCGGTGGTCACATCCA 60.302 57.895 3.40 0.00 34.85 3.41
1585 1613 1.779061 AACGGGCCCTCATGACACTT 61.779 55.000 22.43 0.00 0.00 3.16
1820 1848 0.820871 AGAGTGGGTCTTCGATGAGC 59.179 55.000 19.13 19.13 27.07 4.26
1914 1947 4.675161 TGGCGGCCCATCAAGCAA 62.675 61.111 17.97 0.00 35.79 3.91
1979 2012 1.340502 TGTGCAAGACCCAAACTGTCA 60.341 47.619 0.00 0.00 35.15 3.58
2076 2110 4.319177 AGAAGGTTTTTGAGGTCGATGAG 58.681 43.478 0.00 0.00 0.00 2.90
2107 2141 1.730851 AGGTCTTCTCTCGGGGTTTT 58.269 50.000 0.00 0.00 0.00 2.43
2111 2145 1.213430 AGTCTAGGTCTTCTCTCGGGG 59.787 57.143 0.00 0.00 0.00 5.73
2259 2293 7.710475 ACCTTTTGGAATGTAAAAACTCATGTG 59.290 33.333 0.00 0.00 44.07 3.21
2464 2499 1.080995 CGCAGTGCTCAAGAGGTAGC 61.081 60.000 14.33 0.00 39.25 3.58
2465 2500 0.244994 ACGCAGTGCTCAAGAGGTAG 59.755 55.000 14.33 0.00 42.51 3.18
2466 2501 0.679505 AACGCAGTGCTCAAGAGGTA 59.320 50.000 14.33 0.00 45.00 3.08
2467 2502 0.882042 CAACGCAGTGCTCAAGAGGT 60.882 55.000 14.33 0.00 45.00 3.85
2468 2503 1.572085 CCAACGCAGTGCTCAAGAGG 61.572 60.000 14.33 2.70 45.00 3.69
2469 2504 0.882042 ACCAACGCAGTGCTCAAGAG 60.882 55.000 14.33 0.00 45.00 2.85
2470 2505 0.463654 AACCAACGCAGTGCTCAAGA 60.464 50.000 14.33 0.00 45.00 3.02
2471 2506 0.381801 AAACCAACGCAGTGCTCAAG 59.618 50.000 14.33 0.00 45.00 3.02
2472 2507 0.814457 AAAACCAACGCAGTGCTCAA 59.186 45.000 14.33 0.00 45.00 3.02
2473 2508 0.380378 GAAAACCAACGCAGTGCTCA 59.620 50.000 14.33 0.00 45.00 4.26
2474 2509 0.317854 GGAAAACCAACGCAGTGCTC 60.318 55.000 14.33 0.60 45.00 4.26
2475 2510 1.733526 GGAAAACCAACGCAGTGCT 59.266 52.632 14.33 0.00 45.00 4.40
2476 2511 1.299850 GGGAAAACCAACGCAGTGC 60.300 57.895 4.58 4.58 45.00 4.40
2477 2512 0.744281 AAGGGAAAACCAACGCAGTG 59.256 50.000 0.00 0.00 40.90 3.66
2478 2513 2.351706 TAAGGGAAAACCAACGCAGT 57.648 45.000 0.00 0.00 43.89 4.40
2479 2514 3.316868 TCTTTAAGGGAAAACCAACGCAG 59.683 43.478 0.00 0.00 43.89 5.18
2480 2515 3.288964 TCTTTAAGGGAAAACCAACGCA 58.711 40.909 0.00 0.00 43.89 5.24
2481 2516 3.305131 CCTCTTTAAGGGAAAACCAACGC 60.305 47.826 0.00 0.00 42.03 4.84
2482 2517 4.139038 TCCTCTTTAAGGGAAAACCAACG 58.861 43.478 0.00 0.00 46.23 4.10
2483 2518 6.462487 CCTTTCCTCTTTAAGGGAAAACCAAC 60.462 42.308 20.08 0.00 42.49 3.77
2484 2519 5.600898 CCTTTCCTCTTTAAGGGAAAACCAA 59.399 40.000 20.08 6.37 42.49 3.67
2485 2520 5.144832 CCTTTCCTCTTTAAGGGAAAACCA 58.855 41.667 20.08 6.63 42.49 3.67
2486 2521 5.723672 CCTTTCCTCTTTAAGGGAAAACC 57.276 43.478 20.08 0.00 42.49 3.27
2494 2529 2.820197 GCACCACCCTTTCCTCTTTAAG 59.180 50.000 0.00 0.00 0.00 1.85
2495 2530 2.175931 TGCACCACCCTTTCCTCTTTAA 59.824 45.455 0.00 0.00 0.00 1.52
2496 2531 1.777878 TGCACCACCCTTTCCTCTTTA 59.222 47.619 0.00 0.00 0.00 1.85
2497 2532 0.555769 TGCACCACCCTTTCCTCTTT 59.444 50.000 0.00 0.00 0.00 2.52
2498 2533 0.111253 CTGCACCACCCTTTCCTCTT 59.889 55.000 0.00 0.00 0.00 2.85
2499 2534 1.062488 ACTGCACCACCCTTTCCTCT 61.062 55.000 0.00 0.00 0.00 3.69
2500 2535 0.690762 TACTGCACCACCCTTTCCTC 59.309 55.000 0.00 0.00 0.00 3.71
2501 2536 1.145571 TTACTGCACCACCCTTTCCT 58.854 50.000 0.00 0.00 0.00 3.36
2502 2537 1.886542 CTTTACTGCACCACCCTTTCC 59.113 52.381 0.00 0.00 0.00 3.13
2503 2538 1.269723 GCTTTACTGCACCACCCTTTC 59.730 52.381 0.00 0.00 0.00 2.62
2504 2539 1.328279 GCTTTACTGCACCACCCTTT 58.672 50.000 0.00 0.00 0.00 3.11
2505 2540 0.184933 TGCTTTACTGCACCACCCTT 59.815 50.000 0.00 0.00 38.12 3.95
2506 2541 0.184933 TTGCTTTACTGCACCACCCT 59.815 50.000 0.00 0.00 43.20 4.34
2507 2542 0.313987 GTTGCTTTACTGCACCACCC 59.686 55.000 0.00 0.00 43.20 4.61
2508 2543 0.040425 CGTTGCTTTACTGCACCACC 60.040 55.000 0.00 0.00 43.20 4.61
2509 2544 0.661020 ACGTTGCTTTACTGCACCAC 59.339 50.000 0.00 0.00 43.20 4.16
2510 2545 2.242047 TACGTTGCTTTACTGCACCA 57.758 45.000 0.00 0.00 43.20 4.17
2511 2546 2.546789 ACTTACGTTGCTTTACTGCACC 59.453 45.455 0.00 0.00 43.20 5.01
2512 2547 3.872560 ACTTACGTTGCTTTACTGCAC 57.127 42.857 0.00 0.00 43.20 4.57
2513 2548 6.347888 GGAAATACTTACGTTGCTTTACTGCA 60.348 38.462 0.00 0.00 41.65 4.41
2514 2549 6.019762 GGAAATACTTACGTTGCTTTACTGC 58.980 40.000 0.00 0.00 0.00 4.40
2515 2550 6.370718 AGGGAAATACTTACGTTGCTTTACTG 59.629 38.462 0.00 0.00 0.00 2.74
2516 2551 6.470278 AGGGAAATACTTACGTTGCTTTACT 58.530 36.000 0.00 0.00 0.00 2.24
2517 2552 6.454715 CGAGGGAAATACTTACGTTGCTTTAC 60.455 42.308 0.00 0.00 0.00 2.01
2518 2553 5.577945 CGAGGGAAATACTTACGTTGCTTTA 59.422 40.000 0.00 0.00 0.00 1.85
2519 2554 4.390909 CGAGGGAAATACTTACGTTGCTTT 59.609 41.667 0.00 0.00 0.00 3.51
2520 2555 3.930848 CGAGGGAAATACTTACGTTGCTT 59.069 43.478 0.00 0.00 0.00 3.91
2521 2556 3.518590 CGAGGGAAATACTTACGTTGCT 58.481 45.455 0.00 0.00 0.00 3.91
2522 2557 2.606272 CCGAGGGAAATACTTACGTTGC 59.394 50.000 0.00 0.00 0.00 4.17
2523 2558 3.853475 ACCGAGGGAAATACTTACGTTG 58.147 45.455 0.00 0.00 0.00 4.10
2524 2559 4.541973 AACCGAGGGAAATACTTACGTT 57.458 40.909 0.00 0.00 0.00 3.99
2525 2560 4.541973 AAACCGAGGGAAATACTTACGT 57.458 40.909 0.00 0.00 0.00 3.57
2526 2561 5.409214 TCAAAAACCGAGGGAAATACTTACG 59.591 40.000 0.00 0.00 0.00 3.18
2527 2562 6.652062 TCTCAAAAACCGAGGGAAATACTTAC 59.348 38.462 0.00 0.00 0.00 2.34
2528 2563 6.771573 TCTCAAAAACCGAGGGAAATACTTA 58.228 36.000 0.00 0.00 0.00 2.24
2529 2564 5.627135 TCTCAAAAACCGAGGGAAATACTT 58.373 37.500 0.00 0.00 0.00 2.24
2530 2565 5.237236 TCTCAAAAACCGAGGGAAATACT 57.763 39.130 0.00 0.00 0.00 2.12
2531 2566 5.335426 GGTTCTCAAAAACCGAGGGAAATAC 60.335 44.000 0.00 0.00 39.40 1.89
2532 2567 4.763279 GGTTCTCAAAAACCGAGGGAAATA 59.237 41.667 0.00 0.00 39.40 1.40
2533 2568 3.572682 GGTTCTCAAAAACCGAGGGAAAT 59.427 43.478 0.00 0.00 39.40 2.17
2534 2569 2.953648 GGTTCTCAAAAACCGAGGGAAA 59.046 45.455 0.00 0.00 39.40 3.13
2535 2570 2.578786 GGTTCTCAAAAACCGAGGGAA 58.421 47.619 0.00 0.00 39.40 3.97
2536 2571 2.265589 GGTTCTCAAAAACCGAGGGA 57.734 50.000 0.00 0.00 39.40 4.20
2543 2578 7.886338 AGATTGATACCTTGGTTCTCAAAAAC 58.114 34.615 16.13 12.25 34.56 2.43
2544 2579 9.231297 CTAGATTGATACCTTGGTTCTCAAAAA 57.769 33.333 16.13 8.15 34.56 1.94
2545 2580 8.383175 ACTAGATTGATACCTTGGTTCTCAAAA 58.617 33.333 16.13 8.38 34.56 2.44
2546 2581 7.918076 ACTAGATTGATACCTTGGTTCTCAAA 58.082 34.615 16.13 5.29 34.56 2.69
2547 2582 7.496346 ACTAGATTGATACCTTGGTTCTCAA 57.504 36.000 15.14 15.14 0.00 3.02
2548 2583 7.287927 CCTACTAGATTGATACCTTGGTTCTCA 59.712 40.741 0.00 0.00 0.00 3.27
2549 2584 7.506261 TCCTACTAGATTGATACCTTGGTTCTC 59.494 40.741 0.00 0.00 0.00 2.87
2550 2585 7.363031 TCCTACTAGATTGATACCTTGGTTCT 58.637 38.462 0.00 0.00 0.00 3.01
2551 2586 7.506261 TCTCCTACTAGATTGATACCTTGGTTC 59.494 40.741 0.00 0.00 0.00 3.62
2552 2587 7.288158 GTCTCCTACTAGATTGATACCTTGGTT 59.712 40.741 0.00 0.00 0.00 3.67
2553 2588 6.778559 GTCTCCTACTAGATTGATACCTTGGT 59.221 42.308 0.00 0.00 0.00 3.67
2554 2589 6.209788 GGTCTCCTACTAGATTGATACCTTGG 59.790 46.154 0.00 0.00 0.00 3.61
2555 2590 6.778069 TGGTCTCCTACTAGATTGATACCTTG 59.222 42.308 0.00 0.00 0.00 3.61
2556 2591 6.778559 GTGGTCTCCTACTAGATTGATACCTT 59.221 42.308 0.00 0.00 0.00 3.50
2557 2592 6.308566 GTGGTCTCCTACTAGATTGATACCT 58.691 44.000 0.00 0.00 0.00 3.08
2558 2593 5.181622 CGTGGTCTCCTACTAGATTGATACC 59.818 48.000 0.00 2.65 0.00 2.73
2559 2594 5.335035 GCGTGGTCTCCTACTAGATTGATAC 60.335 48.000 0.00 0.00 0.00 2.24
2560 2595 4.760715 GCGTGGTCTCCTACTAGATTGATA 59.239 45.833 0.00 0.00 0.00 2.15
2561 2596 3.570550 GCGTGGTCTCCTACTAGATTGAT 59.429 47.826 0.00 0.00 0.00 2.57
2562 2597 2.950309 GCGTGGTCTCCTACTAGATTGA 59.050 50.000 0.00 0.00 0.00 2.57
2563 2598 2.287069 CGCGTGGTCTCCTACTAGATTG 60.287 54.545 0.00 0.00 0.00 2.67
2564 2599 1.948145 CGCGTGGTCTCCTACTAGATT 59.052 52.381 0.00 0.00 0.00 2.40
2565 2600 1.595466 CGCGTGGTCTCCTACTAGAT 58.405 55.000 0.00 0.00 0.00 1.98
2566 2601 1.094073 GCGCGTGGTCTCCTACTAGA 61.094 60.000 8.43 0.00 0.00 2.43
2567 2602 1.355916 GCGCGTGGTCTCCTACTAG 59.644 63.158 8.43 0.00 0.00 2.57
2568 2603 2.466982 CGCGCGTGGTCTCCTACTA 61.467 63.158 24.19 0.00 0.00 1.82
2569 2604 3.812019 CGCGCGTGGTCTCCTACT 61.812 66.667 24.19 0.00 0.00 2.57
2570 2605 3.736482 CTCGCGCGTGGTCTCCTAC 62.736 68.421 30.98 0.00 0.00 3.18
2571 2606 3.506096 CTCGCGCGTGGTCTCCTA 61.506 66.667 30.98 5.69 0.00 2.94
2574 2609 4.400109 TGACTCGCGCGTGGTCTC 62.400 66.667 36.13 26.21 0.00 3.36
2575 2610 4.702081 GTGACTCGCGCGTGGTCT 62.702 66.667 36.13 21.18 0.00 3.85
2588 2623 3.243501 TGTTTGTGTAGGTACGAGGTGAC 60.244 47.826 0.00 0.00 0.00 3.67
2589 2624 2.957680 TGTTTGTGTAGGTACGAGGTGA 59.042 45.455 0.00 0.00 0.00 4.02
2590 2625 3.374220 TGTTTGTGTAGGTACGAGGTG 57.626 47.619 0.00 0.00 0.00 4.00
2591 2626 4.405116 TTTGTTTGTGTAGGTACGAGGT 57.595 40.909 0.00 0.00 0.00 3.85
2592 2627 6.869913 TCTTATTTGTTTGTGTAGGTACGAGG 59.130 38.462 0.00 0.00 0.00 4.63
2593 2628 7.878477 TCTTATTTGTTTGTGTAGGTACGAG 57.122 36.000 0.00 0.00 0.00 4.18
2594 2629 7.171337 GGTTCTTATTTGTTTGTGTAGGTACGA 59.829 37.037 0.00 0.00 0.00 3.43
2595 2630 7.172019 AGGTTCTTATTTGTTTGTGTAGGTACG 59.828 37.037 0.00 0.00 0.00 3.67
2596 2631 8.387190 AGGTTCTTATTTGTTTGTGTAGGTAC 57.613 34.615 0.00 0.00 0.00 3.34
2597 2632 7.385752 CGAGGTTCTTATTTGTTTGTGTAGGTA 59.614 37.037 0.00 0.00 0.00 3.08
2598 2633 6.204108 CGAGGTTCTTATTTGTTTGTGTAGGT 59.796 38.462 0.00 0.00 0.00 3.08
2599 2634 6.599437 CGAGGTTCTTATTTGTTTGTGTAGG 58.401 40.000 0.00 0.00 0.00 3.18
2600 2635 6.077838 GCGAGGTTCTTATTTGTTTGTGTAG 58.922 40.000 0.00 0.00 0.00 2.74
2601 2636 5.527951 TGCGAGGTTCTTATTTGTTTGTGTA 59.472 36.000 0.00 0.00 0.00 2.90
2602 2637 4.336993 TGCGAGGTTCTTATTTGTTTGTGT 59.663 37.500 0.00 0.00 0.00 3.72
2603 2638 4.854399 TGCGAGGTTCTTATTTGTTTGTG 58.146 39.130 0.00 0.00 0.00 3.33
2604 2639 5.278604 GTTGCGAGGTTCTTATTTGTTTGT 58.721 37.500 0.00 0.00 0.00 2.83
2605 2640 4.679654 GGTTGCGAGGTTCTTATTTGTTTG 59.320 41.667 0.00 0.00 0.00 2.93
2606 2641 4.339814 TGGTTGCGAGGTTCTTATTTGTTT 59.660 37.500 0.00 0.00 0.00 2.83
2607 2642 3.886505 TGGTTGCGAGGTTCTTATTTGTT 59.113 39.130 0.00 0.00 0.00 2.83
2608 2643 3.482436 TGGTTGCGAGGTTCTTATTTGT 58.518 40.909 0.00 0.00 0.00 2.83
2609 2644 4.226761 GTTGGTTGCGAGGTTCTTATTTG 58.773 43.478 0.00 0.00 0.00 2.32
2610 2645 3.058501 CGTTGGTTGCGAGGTTCTTATTT 60.059 43.478 0.00 0.00 0.00 1.40
2611 2646 2.482721 CGTTGGTTGCGAGGTTCTTATT 59.517 45.455 0.00 0.00 0.00 1.40
2612 2647 2.073816 CGTTGGTTGCGAGGTTCTTAT 58.926 47.619 0.00 0.00 0.00 1.73
2613 2648 1.504359 CGTTGGTTGCGAGGTTCTTA 58.496 50.000 0.00 0.00 0.00 2.10
2614 2649 1.782028 GCGTTGGTTGCGAGGTTCTT 61.782 55.000 0.00 0.00 0.00 2.52
2615 2650 2.251642 GCGTTGGTTGCGAGGTTCT 61.252 57.895 0.00 0.00 0.00 3.01
2616 2651 2.251371 GCGTTGGTTGCGAGGTTC 59.749 61.111 0.00 0.00 0.00 3.62
2623 2658 0.179174 CCCTTTATCGCGTTGGTTGC 60.179 55.000 5.77 0.00 0.00 4.17
2624 2659 1.161843 ACCCTTTATCGCGTTGGTTG 58.838 50.000 5.77 0.00 0.00 3.77
2625 2660 1.538075 CAACCCTTTATCGCGTTGGTT 59.462 47.619 5.77 4.87 36.56 3.67
2626 2661 1.161843 CAACCCTTTATCGCGTTGGT 58.838 50.000 5.77 0.00 33.54 3.67
2627 2662 1.129811 GACAACCCTTTATCGCGTTGG 59.870 52.381 5.77 0.00 39.89 3.77
2628 2663 1.801771 TGACAACCCTTTATCGCGTTG 59.198 47.619 5.77 2.82 41.06 4.10
2629 2664 2.172851 TGACAACCCTTTATCGCGTT 57.827 45.000 5.77 0.00 0.00 4.84
2630 2665 2.172851 TTGACAACCCTTTATCGCGT 57.827 45.000 5.77 0.00 0.00 6.01
2631 2666 2.031683 GGATTGACAACCCTTTATCGCG 59.968 50.000 0.00 0.00 0.00 5.87
2632 2667 2.357952 GGGATTGACAACCCTTTATCGC 59.642 50.000 14.96 2.43 42.56 4.58
2640 2675 1.165270 CGTGAAGGGATTGACAACCC 58.835 55.000 14.59 14.59 45.88 4.11
2641 2676 1.804748 GTCGTGAAGGGATTGACAACC 59.195 52.381 0.00 0.00 0.00 3.77
2642 2677 1.804748 GGTCGTGAAGGGATTGACAAC 59.195 52.381 0.00 0.00 0.00 3.32
2643 2678 1.418264 TGGTCGTGAAGGGATTGACAA 59.582 47.619 0.00 0.00 0.00 3.18
2644 2679 1.052617 TGGTCGTGAAGGGATTGACA 58.947 50.000 0.00 0.00 0.00 3.58
2645 2680 1.002087 AGTGGTCGTGAAGGGATTGAC 59.998 52.381 0.00 0.00 0.00 3.18
2646 2681 1.348064 AGTGGTCGTGAAGGGATTGA 58.652 50.000 0.00 0.00 0.00 2.57
2647 2682 1.806542 CAAGTGGTCGTGAAGGGATTG 59.193 52.381 0.00 0.00 0.00 2.67
2648 2683 1.882352 GCAAGTGGTCGTGAAGGGATT 60.882 52.381 0.00 0.00 0.00 3.01
2649 2684 0.321653 GCAAGTGGTCGTGAAGGGAT 60.322 55.000 0.00 0.00 0.00 3.85
2650 2685 1.070786 GCAAGTGGTCGTGAAGGGA 59.929 57.895 0.00 0.00 0.00 4.20
2651 2686 0.817634 TTGCAAGTGGTCGTGAAGGG 60.818 55.000 0.00 0.00 0.00 3.95
2652 2687 0.588252 CTTGCAAGTGGTCGTGAAGG 59.412 55.000 18.65 0.00 0.00 3.46
2653 2688 1.528586 CTCTTGCAAGTGGTCGTGAAG 59.471 52.381 25.19 8.80 0.00 3.02
2654 2689 1.134521 ACTCTTGCAAGTGGTCGTGAA 60.135 47.619 27.12 6.07 0.00 3.18
2655 2690 0.464036 ACTCTTGCAAGTGGTCGTGA 59.536 50.000 27.12 6.97 0.00 4.35
2656 2691 0.583438 CACTCTTGCAAGTGGTCGTG 59.417 55.000 27.12 20.47 42.42 4.35
2657 2692 0.464036 TCACTCTTGCAAGTGGTCGT 59.536 50.000 27.12 14.85 45.47 4.34
2658 2693 1.143305 CTCACTCTTGCAAGTGGTCG 58.857 55.000 27.12 17.11 45.47 4.79
2659 2694 2.533266 TCTCACTCTTGCAAGTGGTC 57.467 50.000 27.12 0.00 45.47 4.02
2660 2695 2.636893 AGATCTCACTCTTGCAAGTGGT 59.363 45.455 27.12 22.01 45.47 4.16
2661 2696 3.001414 CAGATCTCACTCTTGCAAGTGG 58.999 50.000 27.12 21.47 45.47 4.00
2662 2697 3.922910 TCAGATCTCACTCTTGCAAGTG 58.077 45.455 25.19 24.22 46.54 3.16
2663 2698 4.822685 ATCAGATCTCACTCTTGCAAGT 57.177 40.909 25.19 5.71 0.00 3.16
2664 2699 6.039605 TCTCTATCAGATCTCACTCTTGCAAG 59.960 42.308 20.81 20.81 0.00 4.01
2665 2700 5.890419 TCTCTATCAGATCTCACTCTTGCAA 59.110 40.000 0.00 0.00 0.00 4.08
2666 2701 5.444176 TCTCTATCAGATCTCACTCTTGCA 58.556 41.667 0.00 0.00 0.00 4.08
2667 2702 6.579666 ATCTCTATCAGATCTCACTCTTGC 57.420 41.667 0.00 0.00 37.24 4.01
2757 2792 9.699410 TCCATCATACAAGTTTCCAATCTATTT 57.301 29.630 0.00 0.00 0.00 1.40
2758 2793 9.347240 CTCCATCATACAAGTTTCCAATCTATT 57.653 33.333 0.00 0.00 0.00 1.73
2759 2794 8.717717 TCTCCATCATACAAGTTTCCAATCTAT 58.282 33.333 0.00 0.00 0.00 1.98
2760 2795 8.089625 TCTCCATCATACAAGTTTCCAATCTA 57.910 34.615 0.00 0.00 0.00 1.98
2761 2796 6.962182 TCTCCATCATACAAGTTTCCAATCT 58.038 36.000 0.00 0.00 0.00 2.40
2762 2797 7.630242 TTCTCCATCATACAAGTTTCCAATC 57.370 36.000 0.00 0.00 0.00 2.67
2763 2798 9.347240 CTATTCTCCATCATACAAGTTTCCAAT 57.653 33.333 0.00 0.00 0.00 3.16
2764 2799 8.548025 TCTATTCTCCATCATACAAGTTTCCAA 58.452 33.333 0.00 0.00 0.00 3.53
2765 2800 7.987458 GTCTATTCTCCATCATACAAGTTTCCA 59.013 37.037 0.00 0.00 0.00 3.53
2766 2801 7.442666 GGTCTATTCTCCATCATACAAGTTTCC 59.557 40.741 0.00 0.00 0.00 3.13
2767 2802 8.207545 AGGTCTATTCTCCATCATACAAGTTTC 58.792 37.037 0.00 0.00 0.00 2.78
2768 2803 7.989741 CAGGTCTATTCTCCATCATACAAGTTT 59.010 37.037 0.00 0.00 0.00 2.66
2769 2804 7.419518 CCAGGTCTATTCTCCATCATACAAGTT 60.420 40.741 0.00 0.00 0.00 2.66
2770 2805 6.042552 CCAGGTCTATTCTCCATCATACAAGT 59.957 42.308 0.00 0.00 0.00 3.16
2771 2806 6.462500 CCAGGTCTATTCTCCATCATACAAG 58.538 44.000 0.00 0.00 0.00 3.16
2772 2807 5.307976 CCCAGGTCTATTCTCCATCATACAA 59.692 44.000 0.00 0.00 0.00 2.41
2773 2808 4.840680 CCCAGGTCTATTCTCCATCATACA 59.159 45.833 0.00 0.00 0.00 2.29
2774 2809 4.223923 CCCCAGGTCTATTCTCCATCATAC 59.776 50.000 0.00 0.00 0.00 2.39
2775 2810 4.429505 CCCCAGGTCTATTCTCCATCATA 58.570 47.826 0.00 0.00 0.00 2.15
2776 2811 3.254960 CCCCAGGTCTATTCTCCATCAT 58.745 50.000 0.00 0.00 0.00 2.45
2777 2812 2.694397 CCCCAGGTCTATTCTCCATCA 58.306 52.381 0.00 0.00 0.00 3.07
2778 2813 1.981495 CCCCCAGGTCTATTCTCCATC 59.019 57.143 0.00 0.00 0.00 3.51
2779 2814 2.047742 GCCCCCAGGTCTATTCTCCAT 61.048 57.143 0.00 0.00 34.57 3.41
2780 2815 0.694444 GCCCCCAGGTCTATTCTCCA 60.694 60.000 0.00 0.00 34.57 3.86
2781 2816 1.419720 GGCCCCCAGGTCTATTCTCC 61.420 65.000 0.00 0.00 33.65 3.71
2782 2817 0.694444 TGGCCCCCAGGTCTATTCTC 60.694 60.000 0.00 0.00 39.18 2.87
2783 2818 0.028642 ATGGCCCCCAGGTCTATTCT 60.029 55.000 0.00 0.00 39.18 2.40
2784 2819 1.630878 CTATGGCCCCCAGGTCTATTC 59.369 57.143 0.00 0.00 39.18 1.75
2785 2820 1.747444 CTATGGCCCCCAGGTCTATT 58.253 55.000 0.00 0.00 39.18 1.73
2786 2821 0.178861 CCTATGGCCCCCAGGTCTAT 60.179 60.000 0.00 0.00 39.18 1.98
2787 2822 1.238938 CCTATGGCCCCCAGGTCTA 59.761 63.158 0.00 0.00 39.18 2.59
2788 2823 2.039405 CCTATGGCCCCCAGGTCT 60.039 66.667 0.00 0.00 39.18 3.85
2789 2824 1.580994 AAACCTATGGCCCCCAGGTC 61.581 60.000 17.69 0.00 36.75 3.85
2790 2825 1.546460 AAACCTATGGCCCCCAGGT 60.546 57.895 12.97 12.97 36.75 4.00
2791 2826 1.230212 GAAACCTATGGCCCCCAGG 59.770 63.158 11.79 11.79 36.75 4.45
2792 2827 0.395724 GTGAAACCTATGGCCCCCAG 60.396 60.000 0.00 0.00 36.75 4.45
2793 2828 0.849094 AGTGAAACCTATGGCCCCCA 60.849 55.000 0.00 0.00 37.80 4.96
2794 2829 1.143073 CTAGTGAAACCTATGGCCCCC 59.857 57.143 0.00 0.00 37.80 5.40
2795 2830 1.844497 ACTAGTGAAACCTATGGCCCC 59.156 52.381 0.00 0.00 37.80 5.80
2796 2831 2.421529 CCACTAGTGAAACCTATGGCCC 60.422 54.545 24.68 0.00 37.80 5.80
2797 2832 2.919228 CCACTAGTGAAACCTATGGCC 58.081 52.381 24.68 0.00 37.80 5.36
2798 2833 2.289565 GCCACTAGTGAAACCTATGGC 58.710 52.381 24.68 11.74 43.89 4.40
2799 2834 3.914426 AGCCACTAGTGAAACCTATGG 57.086 47.619 24.68 5.15 37.80 2.74
2800 2835 5.091261 AGAAGCCACTAGTGAAACCTATG 57.909 43.478 24.68 5.82 37.80 2.23
2801 2836 5.763876 AAGAAGCCACTAGTGAAACCTAT 57.236 39.130 24.68 2.97 37.80 2.57
2802 2837 5.071250 TGAAAGAAGCCACTAGTGAAACCTA 59.929 40.000 24.68 0.00 37.80 3.08
2803 2838 4.141482 TGAAAGAAGCCACTAGTGAAACCT 60.141 41.667 24.68 12.28 37.80 3.50
2804 2839 4.134563 TGAAAGAAGCCACTAGTGAAACC 58.865 43.478 24.68 10.28 37.80 3.27
2805 2840 5.527582 TCTTGAAAGAAGCCACTAGTGAAAC 59.472 40.000 24.68 12.76 30.73 2.78
2806 2841 5.680619 TCTTGAAAGAAGCCACTAGTGAAA 58.319 37.500 24.68 3.74 30.73 2.69
2807 2842 5.290493 TCTTGAAAGAAGCCACTAGTGAA 57.710 39.130 24.68 6.10 30.73 3.18
2808 2843 4.955811 TCTTGAAAGAAGCCACTAGTGA 57.044 40.909 24.68 0.00 30.73 3.41
2809 2844 5.293079 GCTATCTTGAAAGAAGCCACTAGTG 59.707 44.000 16.34 16.34 38.77 2.74
2810 2845 5.046304 TGCTATCTTGAAAGAAGCCACTAGT 60.046 40.000 17.12 0.00 38.77 2.57
2811 2846 5.423015 TGCTATCTTGAAAGAAGCCACTAG 58.577 41.667 17.12 7.69 38.77 2.57
2812 2847 5.420725 TGCTATCTTGAAAGAAGCCACTA 57.579 39.130 17.12 4.29 38.77 2.74
2813 2848 4.292186 TGCTATCTTGAAAGAAGCCACT 57.708 40.909 17.12 0.00 38.77 4.00
2814 2849 6.317391 ACTTATGCTATCTTGAAAGAAGCCAC 59.683 38.462 17.12 2.08 38.77 5.01
2815 2850 6.418101 ACTTATGCTATCTTGAAAGAAGCCA 58.582 36.000 17.12 7.89 38.77 4.75
2816 2851 6.934048 ACTTATGCTATCTTGAAAGAAGCC 57.066 37.500 17.12 3.86 38.77 4.35
2823 2858 9.778741 CCACCTTAATACTTATGCTATCTTGAA 57.221 33.333 0.00 0.00 0.00 2.69
2824 2859 8.375506 CCCACCTTAATACTTATGCTATCTTGA 58.624 37.037 0.00 0.00 0.00 3.02
2825 2860 8.157476 ACCCACCTTAATACTTATGCTATCTTG 58.843 37.037 0.00 0.00 0.00 3.02
2826 2861 8.157476 CACCCACCTTAATACTTATGCTATCTT 58.843 37.037 0.00 0.00 0.00 2.40
2827 2862 7.512746 TCACCCACCTTAATACTTATGCTATCT 59.487 37.037 0.00 0.00 0.00 1.98
2828 2863 7.676947 TCACCCACCTTAATACTTATGCTATC 58.323 38.462 0.00 0.00 0.00 2.08
2829 2864 7.626999 TCACCCACCTTAATACTTATGCTAT 57.373 36.000 0.00 0.00 0.00 2.97
2830 2865 7.092802 TGTTCACCCACCTTAATACTTATGCTA 60.093 37.037 0.00 0.00 0.00 3.49
2831 2866 5.968676 TCACCCACCTTAATACTTATGCT 57.031 39.130 0.00 0.00 0.00 3.79
2832 2867 5.883673 TGTTCACCCACCTTAATACTTATGC 59.116 40.000 0.00 0.00 0.00 3.14
2833 2868 7.931578 TTGTTCACCCACCTTAATACTTATG 57.068 36.000 0.00 0.00 0.00 1.90
2834 2869 9.541884 AATTTGTTCACCCACCTTAATACTTAT 57.458 29.630 0.00 0.00 0.00 1.73
2835 2870 8.943594 AATTTGTTCACCCACCTTAATACTTA 57.056 30.769 0.00 0.00 0.00 2.24
2836 2871 7.849322 AATTTGTTCACCCACCTTAATACTT 57.151 32.000 0.00 0.00 0.00 2.24
2837 2872 8.168058 AGTAATTTGTTCACCCACCTTAATACT 58.832 33.333 0.00 0.00 0.00 2.12
2838 2873 8.241367 CAGTAATTTGTTCACCCACCTTAATAC 58.759 37.037 0.00 0.00 0.00 1.89
2839 2874 7.945664 ACAGTAATTTGTTCACCCACCTTAATA 59.054 33.333 0.00 0.00 0.00 0.98
2840 2875 6.780522 ACAGTAATTTGTTCACCCACCTTAAT 59.219 34.615 0.00 0.00 0.00 1.40
2841 2876 6.130569 ACAGTAATTTGTTCACCCACCTTAA 58.869 36.000 0.00 0.00 0.00 1.85
2842 2877 5.697067 ACAGTAATTTGTTCACCCACCTTA 58.303 37.500 0.00 0.00 0.00 2.69
2843 2878 4.542697 ACAGTAATTTGTTCACCCACCTT 58.457 39.130 0.00 0.00 0.00 3.50
2844 2879 4.142038 GACAGTAATTTGTTCACCCACCT 58.858 43.478 0.00 0.00 0.00 4.00
2845 2880 3.058501 CGACAGTAATTTGTTCACCCACC 60.059 47.826 0.00 0.00 0.00 4.61
2846 2881 3.810941 TCGACAGTAATTTGTTCACCCAC 59.189 43.478 0.00 0.00 0.00 4.61
2847 2882 4.062293 CTCGACAGTAATTTGTTCACCCA 58.938 43.478 0.00 0.00 0.00 4.51
2848 2883 3.120304 GCTCGACAGTAATTTGTTCACCC 60.120 47.826 0.00 0.00 0.00 4.61
2849 2884 3.496884 TGCTCGACAGTAATTTGTTCACC 59.503 43.478 0.00 0.00 0.00 4.02
2850 2885 4.725556 TGCTCGACAGTAATTTGTTCAC 57.274 40.909 0.00 0.00 0.00 3.18
2851 2886 5.940192 ATTGCTCGACAGTAATTTGTTCA 57.060 34.783 0.00 0.00 31.31 3.18
2852 2887 6.602564 CAATTGCTCGACAGTAATTTGTTC 57.397 37.500 0.00 0.00 40.85 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.