Multiple sequence alignment - TraesCS1A01G163300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G163300 chr1A 100.000 2603 0 0 1 2603 293245002 293247604 0.000000e+00 4807.0
1 TraesCS1A01G163300 chr1A 91.034 1015 74 9 1588 2589 313886142 313885132 0.000000e+00 1354.0
2 TraesCS1A01G163300 chr1A 90.275 1018 91 4 1588 2603 295001255 295000244 0.000000e+00 1325.0
3 TraesCS1A01G163300 chr1A 100.000 386 0 0 2755 3140 293247756 293248141 0.000000e+00 713.0
4 TraesCS1A01G163300 chr2A 93.854 960 45 6 641 1590 218209285 218210240 0.000000e+00 1434.0
5 TraesCS1A01G163300 chr2A 91.109 1001 87 2 1588 2586 637565843 637566843 0.000000e+00 1354.0
6 TraesCS1A01G163300 chr2A 79.221 154 22 8 1397 1548 187315579 187315724 7.170000e-17 99.0
7 TraesCS1A01G163300 chr4D 91.494 1011 76 6 1588 2593 434920037 434919032 0.000000e+00 1382.0
8 TraesCS1A01G163300 chr4D 96.142 648 24 1 1 647 305481818 305482465 0.000000e+00 1057.0
9 TraesCS1A01G163300 chr4D 95.679 648 27 1 1 647 58530077 58530724 0.000000e+00 1040.0
10 TraesCS1A01G163300 chr4D 88.308 402 30 8 2755 3140 349510460 349510060 1.710000e-127 466.0
11 TraesCS1A01G163300 chr4D 87.724 391 40 4 2755 3137 110796451 110796841 1.720000e-122 449.0
12 TraesCS1A01G163300 chr4D 81.638 403 54 13 645 1038 287244376 287244767 1.820000e-82 316.0
13 TraesCS1A01G163300 chr1D 91.617 1002 78 4 1588 2587 146877436 146876439 0.000000e+00 1380.0
14 TraesCS1A01G163300 chr1D 91.881 973 76 3 1588 2558 131883765 131882794 0.000000e+00 1356.0
15 TraesCS1A01G163300 chr1D 93.333 60 3 1 1049 1107 214083539 214083598 1.550000e-13 87.9
16 TraesCS1A01G163300 chr3A 91.304 1012 75 8 1588 2586 214361471 214362482 0.000000e+00 1369.0
17 TraesCS1A01G163300 chr5A 91.778 973 78 2 1588 2558 199464836 199463864 0.000000e+00 1352.0
18 TraesCS1A01G163300 chr2D 91.304 989 73 7 1588 2569 366561688 366562670 0.000000e+00 1338.0
19 TraesCS1A01G163300 chr2D 95.840 649 25 2 1 647 213459016 213458368 0.000000e+00 1048.0
20 TraesCS1A01G163300 chr2D 95.827 647 26 1 1 647 369172169 369171524 0.000000e+00 1044.0
21 TraesCS1A01G163300 chr3D 95.988 648 23 3 1 647 328882054 328881409 0.000000e+00 1050.0
22 TraesCS1A01G163300 chr3D 95.833 648 25 2 1 647 417682884 417682238 0.000000e+00 1046.0
23 TraesCS1A01G163300 chr3D 88.689 389 41 1 2755 3140 346388092 346387704 3.670000e-129 472.0
24 TraesCS1A01G163300 chr3D 88.601 386 37 4 2755 3140 358246381 358246003 2.210000e-126 462.0
25 TraesCS1A01G163300 chr5D 95.833 648 25 2 1 647 365959583 365958937 0.000000e+00 1046.0
26 TraesCS1A01G163300 chr5D 88.052 385 41 3 2755 3136 101888716 101888334 4.780000e-123 451.0
27 TraesCS1A01G163300 chr6D 95.679 648 26 2 1 647 95932392 95933038 0.000000e+00 1040.0
28 TraesCS1A01G163300 chr6D 95.686 649 25 2 1 647 305751525 305752172 0.000000e+00 1040.0
29 TraesCS1A01G163300 chr6D 88.325 394 33 6 2755 3136 48313560 48313168 7.930000e-126 460.0
30 TraesCS1A01G163300 chr6D 87.980 391 38 7 2757 3140 408770167 408769779 1.330000e-123 453.0
31 TraesCS1A01G163300 chr7A 92.332 639 39 2 644 1273 108092560 108093197 0.000000e+00 900.0
32 TraesCS1A01G163300 chr6B 88.889 702 44 11 899 1566 534185783 534186484 0.000000e+00 833.0
33 TraesCS1A01G163300 chr6B 90.000 260 25 1 645 903 534185396 534185655 5.020000e-88 335.0
34 TraesCS1A01G163300 chr6B 89.960 249 23 2 644 891 121019 120772 1.410000e-83 320.0
35 TraesCS1A01G163300 chr6B 90.076 131 7 1 1460 1590 120775 120651 6.970000e-37 165.0
36 TraesCS1A01G163300 chr6B 85.333 75 10 1 644 718 474643161 474643234 3.360000e-10 76.8
37 TraesCS1A01G163300 chr7D 91.365 498 27 3 1109 1590 107474609 107475106 0.000000e+00 667.0
38 TraesCS1A01G163300 chr7D 88.601 386 41 3 2755 3137 351109004 351109389 1.710000e-127 466.0
39 TraesCS1A01G163300 chr7D 88.342 386 41 2 2755 3136 371697468 371697083 7.930000e-126 460.0
40 TraesCS1A01G163300 chr4B 92.670 382 22 1 1215 1590 129056569 129056188 2.130000e-151 545.0
41 TraesCS1A01G163300 chr4B 90.291 206 19 1 661 866 129056772 129056568 5.160000e-68 268.0
42 TraesCS1A01G163300 chr4B 80.928 194 35 2 645 837 436865186 436865378 5.420000e-33 152.0
43 TraesCS1A01G163300 chr7B 86.087 230 32 0 652 881 186720209 186720438 6.720000e-62 248.0
44 TraesCS1A01G163300 chr3B 82.326 215 36 2 645 858 671440126 671439913 5.350000e-43 185.0
45 TraesCS1A01G163300 chr2B 84.158 101 16 0 1451 1551 232281503 232281403 7.170000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G163300 chr1A 293245002 293248141 3139 False 2760.0 4807 100.0000 1 3140 2 chr1A.!!$F1 3139
1 TraesCS1A01G163300 chr1A 313885132 313886142 1010 True 1354.0 1354 91.0340 1588 2589 1 chr1A.!!$R2 1001
2 TraesCS1A01G163300 chr1A 295000244 295001255 1011 True 1325.0 1325 90.2750 1588 2603 1 chr1A.!!$R1 1015
3 TraesCS1A01G163300 chr2A 218209285 218210240 955 False 1434.0 1434 93.8540 641 1590 1 chr2A.!!$F2 949
4 TraesCS1A01G163300 chr2A 637565843 637566843 1000 False 1354.0 1354 91.1090 1588 2586 1 chr2A.!!$F3 998
5 TraesCS1A01G163300 chr4D 434919032 434920037 1005 True 1382.0 1382 91.4940 1588 2593 1 chr4D.!!$R2 1005
6 TraesCS1A01G163300 chr4D 305481818 305482465 647 False 1057.0 1057 96.1420 1 647 1 chr4D.!!$F4 646
7 TraesCS1A01G163300 chr4D 58530077 58530724 647 False 1040.0 1040 95.6790 1 647 1 chr4D.!!$F1 646
8 TraesCS1A01G163300 chr1D 146876439 146877436 997 True 1380.0 1380 91.6170 1588 2587 1 chr1D.!!$R2 999
9 TraesCS1A01G163300 chr1D 131882794 131883765 971 True 1356.0 1356 91.8810 1588 2558 1 chr1D.!!$R1 970
10 TraesCS1A01G163300 chr3A 214361471 214362482 1011 False 1369.0 1369 91.3040 1588 2586 1 chr3A.!!$F1 998
11 TraesCS1A01G163300 chr5A 199463864 199464836 972 True 1352.0 1352 91.7780 1588 2558 1 chr5A.!!$R1 970
12 TraesCS1A01G163300 chr2D 366561688 366562670 982 False 1338.0 1338 91.3040 1588 2569 1 chr2D.!!$F1 981
13 TraesCS1A01G163300 chr2D 213458368 213459016 648 True 1048.0 1048 95.8400 1 647 1 chr2D.!!$R1 646
14 TraesCS1A01G163300 chr2D 369171524 369172169 645 True 1044.0 1044 95.8270 1 647 1 chr2D.!!$R2 646
15 TraesCS1A01G163300 chr3D 328881409 328882054 645 True 1050.0 1050 95.9880 1 647 1 chr3D.!!$R1 646
16 TraesCS1A01G163300 chr3D 417682238 417682884 646 True 1046.0 1046 95.8330 1 647 1 chr3D.!!$R4 646
17 TraesCS1A01G163300 chr5D 365958937 365959583 646 True 1046.0 1046 95.8330 1 647 1 chr5D.!!$R2 646
18 TraesCS1A01G163300 chr6D 95932392 95933038 646 False 1040.0 1040 95.6790 1 647 1 chr6D.!!$F1 646
19 TraesCS1A01G163300 chr6D 305751525 305752172 647 False 1040.0 1040 95.6860 1 647 1 chr6D.!!$F2 646
20 TraesCS1A01G163300 chr7A 108092560 108093197 637 False 900.0 900 92.3320 644 1273 1 chr7A.!!$F1 629
21 TraesCS1A01G163300 chr6B 534185396 534186484 1088 False 584.0 833 89.4445 645 1566 2 chr6B.!!$F2 921
22 TraesCS1A01G163300 chr4B 129056188 129056772 584 True 406.5 545 91.4805 661 1590 2 chr4B.!!$R1 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 701 0.104672 TCCTCCACAAAGGTCCCTCA 60.105 55.0 0.0 0.0 37.69 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2335 0.035317 CACAACAGAGCAGTGCCCTA 59.965 55.0 12.58 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 70 5.907207 TGTGAGATTATGTAAGGAGAGCAC 58.093 41.667 0.00 0.00 0.00 4.40
260 265 5.306419 AGAGATACTATTCATTGCTGCCTCA 59.694 40.000 0.00 0.00 0.00 3.86
354 359 6.714810 AGGTGAACATGACAATAAAGTAGCAA 59.285 34.615 0.00 0.00 0.00 3.91
445 451 2.027377 CCTCAGGTTCATCTGCTGAGTT 60.027 50.000 0.54 0.00 39.68 3.01
448 454 2.740981 CAGGTTCATCTGCTGAGTTGAC 59.259 50.000 0.00 0.00 34.68 3.18
504 510 1.122227 GAAGGAGATCTGAGGCAGCT 58.878 55.000 0.00 0.00 0.00 4.24
528 535 1.139734 CGGTCAGGAGTCGTGATGG 59.860 63.158 17.87 9.63 31.03 3.51
552 559 2.508526 GTTTGGTGGATGCTTCTGTCT 58.491 47.619 0.00 0.00 0.00 3.41
623 630 4.616181 ACCACACAAAGTTTTCTTCGAG 57.384 40.909 0.00 0.00 39.48 4.04
669 676 6.757173 TTAAACCTATAAGGATGCTAGCCA 57.243 37.500 13.29 0.24 37.67 4.75
693 701 0.104672 TCCTCCACAAAGGTCCCTCA 60.105 55.000 0.00 0.00 37.69 3.86
716 724 2.670148 GGGATGTTCCTGGCCGTCT 61.670 63.158 0.00 0.00 36.57 4.18
718 726 1.296715 GATGTTCCTGGCCGTCTGT 59.703 57.895 0.00 0.00 0.00 3.41
746 754 3.162666 TGAATCTGGTCAACCGAGTAGT 58.837 45.455 0.00 0.00 39.43 2.73
905 914 4.459089 GAGTCGTGCTGCCTCCCC 62.459 72.222 0.00 0.00 0.00 4.81
953 1094 1.308216 CACCCAATCCCCTCCTCCT 60.308 63.158 0.00 0.00 0.00 3.69
957 1098 1.358830 CCAATCCCCTCCTCCTGCAT 61.359 60.000 0.00 0.00 0.00 3.96
1251 1427 1.407989 GCCACTCCTGGATCCTTCTTG 60.408 57.143 14.23 3.81 40.55 3.02
1408 1584 7.034685 TCAGCGCACTAATTAGTCACTTATA 57.965 36.000 15.35 0.00 33.46 0.98
1524 1700 5.140454 AGACTGTTCTTTGCAAGGGTAAAT 58.860 37.500 8.88 0.00 0.00 1.40
1533 1709 6.436847 TCTTTGCAAGGGTAAATCATCATCAA 59.563 34.615 8.88 0.00 0.00 2.57
1538 1714 6.318648 GCAAGGGTAAATCATCATCAACACTA 59.681 38.462 0.00 0.00 0.00 2.74
1626 1802 6.334989 TCATTTGGCTTGCATGATTCTAAAG 58.665 36.000 3.33 0.00 0.00 1.85
1690 1869 3.565063 GCACATGGGAAACAAAGCATTTT 59.435 39.130 0.00 0.00 35.03 1.82
1783 1968 7.938490 AGAAACATGGCCAAAATAAAGTGAAAT 59.062 29.630 10.96 0.00 0.00 2.17
1802 1987 7.119116 AGTGAAATCATATGAAAGCGTGTACAA 59.881 33.333 9.99 0.00 0.00 2.41
1864 2049 9.504708 TGTTTTCATGCATAGGATTTTGAAAAT 57.495 25.926 18.34 2.27 41.97 1.82
1893 2078 4.503643 CCAAGTGGATGTTTTGCTCCATTT 60.504 41.667 0.00 0.00 43.20 2.32
2041 2228 3.877508 GACAAGTGTACAACCTCTTTGCT 59.122 43.478 0.00 0.00 39.01 3.91
2048 2235 1.142870 ACAACCTCTTTGCTGTAGCCA 59.857 47.619 0.80 0.00 39.01 4.75
2051 2238 0.737219 CCTCTTTGCTGTAGCCATGC 59.263 55.000 0.80 0.00 41.18 4.06
2059 2246 2.279517 GTAGCCATGCCGACCTCG 60.280 66.667 0.00 0.00 39.44 4.63
2096 2283 0.520847 GCTGAAGAAGTTGAGGCAGC 59.479 55.000 0.00 0.00 41.38 5.25
2127 2314 3.245984 TGGGAGTTGTGGAGGAAGATCTA 60.246 47.826 0.00 0.00 0.00 1.98
2131 2318 3.777522 AGTTGTGGAGGAAGATCTAAGGG 59.222 47.826 0.00 0.00 0.00 3.95
2148 2335 7.752518 TCTAAGGGATCTATAGACGGTATCT 57.247 40.000 4.10 0.00 41.95 1.98
2184 2371 0.924090 GTGATGGATCGTTCTGTCGC 59.076 55.000 0.00 0.00 0.00 5.19
2191 2378 2.564553 ATCGTTCTGTCGCTGGAGCC 62.565 60.000 0.00 0.00 37.91 4.70
2195 2382 4.749310 CTGTCGCTGGAGCCGCTT 62.749 66.667 0.00 0.00 37.91 4.68
2214 2401 0.892755 TCGGTGAGCCATAAGACGTT 59.107 50.000 0.00 0.00 34.09 3.99
2243 2430 0.875908 GCAGCACAAGACAGACGTCA 60.876 55.000 19.50 0.00 45.23 4.35
2274 2461 7.071698 TCTCAAGTGGGATTCTAATAGCATCTT 59.928 37.037 0.38 0.00 0.00 2.40
2325 2512 6.857964 CACCAAAAATGATCTGACTACAACAC 59.142 38.462 0.00 0.00 0.00 3.32
2389 2576 9.918630 AAACTGAAATTTAATGTGGAATCTGAG 57.081 29.630 0.00 0.00 0.00 3.35
2410 2597 4.751060 AGTGTTAGTGTCGAAACTGAACA 58.249 39.130 18.85 18.78 0.00 3.18
2411 2598 5.357257 AGTGTTAGTGTCGAAACTGAACAT 58.643 37.500 18.85 10.89 32.01 2.71
2422 2609 5.935206 TCGAAACTGAACATAATGGTAGCAA 59.065 36.000 0.00 0.00 0.00 3.91
2463 2650 2.477190 TAGGGAGGGCCTGCAGTTCT 62.477 60.000 27.12 16.21 0.00 3.01
2551 2740 1.971695 GCCCTGAAACAACTCCCCG 60.972 63.158 0.00 0.00 0.00 5.73
2593 2793 4.640690 ACTCCCCACCGCCAGTCT 62.641 66.667 0.00 0.00 0.00 3.24
2595 2795 4.954118 TCCCCACCGCCAGTCTGT 62.954 66.667 0.00 0.00 0.00 3.41
2596 2796 3.953775 CCCCACCGCCAGTCTGTT 61.954 66.667 0.00 0.00 0.00 3.16
2780 2980 2.999507 CAGTCGACTGAAGTGTAGCT 57.000 50.000 36.73 0.00 46.59 3.32
2782 2982 4.421033 CAGTCGACTGAAGTGTAGCTAA 57.579 45.455 36.73 0.00 46.59 3.09
2783 2983 4.795268 CAGTCGACTGAAGTGTAGCTAAA 58.205 43.478 36.73 0.00 46.59 1.85
2784 2984 5.403246 CAGTCGACTGAAGTGTAGCTAAAT 58.597 41.667 36.73 0.00 46.59 1.40
2785 2985 5.513495 CAGTCGACTGAAGTGTAGCTAAATC 59.487 44.000 36.73 0.00 46.59 2.17
2786 2986 4.496183 GTCGACTGAAGTGTAGCTAAATCG 59.504 45.833 8.70 0.00 0.00 3.34
2787 2987 3.791887 CGACTGAAGTGTAGCTAAATCGG 59.208 47.826 0.00 0.00 0.00 4.18
2788 2988 4.438336 CGACTGAAGTGTAGCTAAATCGGA 60.438 45.833 0.00 0.00 0.00 4.55
2789 2989 5.000012 ACTGAAGTGTAGCTAAATCGGAG 58.000 43.478 0.00 0.00 0.00 4.63
2790 2990 4.705507 ACTGAAGTGTAGCTAAATCGGAGA 59.294 41.667 0.00 0.00 45.75 3.71
2791 2991 5.185249 ACTGAAGTGTAGCTAAATCGGAGAA 59.815 40.000 0.00 0.00 43.58 2.87
2792 2992 5.651530 TGAAGTGTAGCTAAATCGGAGAAG 58.348 41.667 0.00 0.00 43.58 2.85
2793 2993 5.417894 TGAAGTGTAGCTAAATCGGAGAAGA 59.582 40.000 0.00 0.00 43.58 2.87
2794 2994 5.508200 AGTGTAGCTAAATCGGAGAAGAG 57.492 43.478 0.00 0.00 43.58 2.85
2795 2995 4.045783 GTGTAGCTAAATCGGAGAAGAGC 58.954 47.826 0.00 0.00 43.58 4.09
2796 2996 2.900716 AGCTAAATCGGAGAAGAGCC 57.099 50.000 0.00 0.00 43.58 4.70
2802 3002 4.441695 CGGAGAAGAGCCGCAGCA 62.442 66.667 0.00 0.00 42.55 4.41
2803 3003 2.817396 GGAGAAGAGCCGCAGCAC 60.817 66.667 0.00 0.00 43.56 4.40
2804 3004 3.184683 GAGAAGAGCCGCAGCACG 61.185 66.667 0.00 0.00 43.56 5.34
2814 3014 4.767255 GCAGCACGAGTGAGGGGG 62.767 72.222 7.50 0.00 0.00 5.40
2815 3015 2.997315 CAGCACGAGTGAGGGGGA 60.997 66.667 7.50 0.00 0.00 4.81
2816 3016 2.681778 AGCACGAGTGAGGGGGAG 60.682 66.667 7.50 0.00 0.00 4.30
2817 3017 2.680352 GCACGAGTGAGGGGGAGA 60.680 66.667 7.50 0.00 0.00 3.71
2818 3018 2.716017 GCACGAGTGAGGGGGAGAG 61.716 68.421 7.50 0.00 0.00 3.20
2819 3019 2.363147 ACGAGTGAGGGGGAGAGC 60.363 66.667 0.00 0.00 0.00 4.09
2820 3020 2.363018 CGAGTGAGGGGGAGAGCA 60.363 66.667 0.00 0.00 0.00 4.26
2821 3021 2.422231 CGAGTGAGGGGGAGAGCAG 61.422 68.421 0.00 0.00 0.00 4.24
2822 3022 2.686835 AGTGAGGGGGAGAGCAGC 60.687 66.667 0.00 0.00 0.00 5.25
2823 3023 3.005539 GTGAGGGGGAGAGCAGCA 61.006 66.667 0.00 0.00 0.00 4.41
2824 3024 2.686470 TGAGGGGGAGAGCAGCAG 60.686 66.667 0.00 0.00 0.00 4.24
2825 3025 4.173924 GAGGGGGAGAGCAGCAGC 62.174 72.222 0.00 0.00 42.56 5.25
2827 3027 4.486503 GGGGGAGAGCAGCAGCAG 62.487 72.222 3.17 0.00 45.49 4.24
2829 3029 4.405671 GGGAGAGCAGCAGCAGCA 62.406 66.667 12.92 0.00 45.49 4.41
2830 3030 3.126225 GGAGAGCAGCAGCAGCAC 61.126 66.667 12.92 5.78 45.49 4.40
2831 3031 3.488978 GAGAGCAGCAGCAGCACG 61.489 66.667 12.92 0.00 45.49 5.34
2832 3032 3.928966 GAGAGCAGCAGCAGCACGA 62.929 63.158 12.92 0.00 45.49 4.35
2833 3033 3.488978 GAGCAGCAGCAGCACGAG 61.489 66.667 12.92 0.00 45.49 4.18
2834 3034 4.311445 AGCAGCAGCAGCACGAGT 62.311 61.111 12.92 0.00 45.49 4.18
2835 3035 4.086178 GCAGCAGCAGCACGAGTG 62.086 66.667 4.63 0.00 45.49 3.51
2836 3036 2.356673 CAGCAGCAGCACGAGTGA 60.357 61.111 7.50 0.00 45.49 3.41
2837 3037 2.048409 AGCAGCAGCACGAGTGAG 60.048 61.111 7.50 0.00 45.49 3.51
2838 3038 3.786586 GCAGCAGCACGAGTGAGC 61.787 66.667 7.50 9.81 41.58 4.26
2839 3039 3.476646 CAGCAGCACGAGTGAGCG 61.477 66.667 7.50 3.71 37.92 5.03
2840 3040 3.674523 AGCAGCACGAGTGAGCGA 61.675 61.111 7.50 0.00 37.92 4.93
2841 3041 3.177920 GCAGCACGAGTGAGCGAG 61.178 66.667 7.50 0.00 36.74 5.03
2842 3042 2.563427 CAGCACGAGTGAGCGAGA 59.437 61.111 7.50 0.00 36.74 4.04
2843 3043 1.513800 CAGCACGAGTGAGCGAGAG 60.514 63.158 7.50 0.00 36.74 3.20
2861 3061 3.128188 CTGGAGCAGCAGCAGCAG 61.128 66.667 12.92 0.00 45.49 4.24
2889 3089 4.700037 CGAGAGCCGAAGCAGTAG 57.300 61.111 0.00 0.00 43.56 2.57
2890 3090 1.587613 CGAGAGCCGAAGCAGTAGC 60.588 63.158 0.00 0.00 43.56 3.58
2891 3091 1.513158 GAGAGCCGAAGCAGTAGCA 59.487 57.895 0.00 0.00 45.49 3.49
2892 3092 0.527385 GAGAGCCGAAGCAGTAGCAG 60.527 60.000 0.00 0.00 45.49 4.24
2893 3093 1.216710 GAGCCGAAGCAGTAGCAGT 59.783 57.895 0.00 0.00 45.49 4.40
2894 3094 0.456221 GAGCCGAAGCAGTAGCAGTA 59.544 55.000 0.00 0.00 45.49 2.74
2895 3095 0.895530 AGCCGAAGCAGTAGCAGTAA 59.104 50.000 0.00 0.00 45.49 2.24
2896 3096 1.000145 GCCGAAGCAGTAGCAGTAAC 59.000 55.000 0.00 0.00 45.49 2.50
2897 3097 1.269166 CCGAAGCAGTAGCAGTAACG 58.731 55.000 0.00 0.00 45.49 3.18
2898 3098 0.640768 CGAAGCAGTAGCAGTAACGC 59.359 55.000 0.00 0.00 45.49 4.84
2899 3099 0.640768 GAAGCAGTAGCAGTAACGCG 59.359 55.000 3.53 3.53 45.49 6.01
2900 3100 0.242825 AAGCAGTAGCAGTAACGCGA 59.757 50.000 15.93 0.00 45.49 5.87
2901 3101 0.179161 AGCAGTAGCAGTAACGCGAG 60.179 55.000 15.93 0.00 45.49 5.03
2902 3102 1.140407 GCAGTAGCAGTAACGCGAGG 61.140 60.000 15.93 0.00 41.58 4.63
2903 3103 0.525668 CAGTAGCAGTAACGCGAGGG 60.526 60.000 15.93 0.00 36.85 4.30
2904 3104 0.679002 AGTAGCAGTAACGCGAGGGA 60.679 55.000 15.93 0.00 36.85 4.20
2905 3105 0.248539 GTAGCAGTAACGCGAGGGAG 60.249 60.000 15.93 0.00 36.85 4.30
2906 3106 0.393402 TAGCAGTAACGCGAGGGAGA 60.393 55.000 15.93 0.00 36.85 3.71
2907 3107 1.226717 GCAGTAACGCGAGGGAGAG 60.227 63.158 15.93 0.00 0.00 3.20
2908 3108 1.226717 CAGTAACGCGAGGGAGAGC 60.227 63.158 15.93 0.00 0.00 4.09
2909 3109 2.104530 GTAACGCGAGGGAGAGCC 59.895 66.667 15.93 0.00 0.00 4.70
2910 3110 2.361992 TAACGCGAGGGAGAGCCA 60.362 61.111 15.93 0.00 35.15 4.75
2911 3111 2.415608 TAACGCGAGGGAGAGCCAG 61.416 63.158 15.93 0.00 35.15 4.85
2912 3112 2.831894 TAACGCGAGGGAGAGCCAGA 62.832 60.000 15.93 0.00 35.15 3.86
2913 3113 3.898509 CGCGAGGGAGAGCCAGAG 61.899 72.222 0.00 0.00 35.15 3.35
2914 3114 4.219999 GCGAGGGAGAGCCAGAGC 62.220 72.222 0.00 0.00 40.32 4.09
2915 3115 2.757508 CGAGGGAGAGCCAGAGCA 60.758 66.667 0.00 0.00 43.56 4.26
2916 3116 2.784356 CGAGGGAGAGCCAGAGCAG 61.784 68.421 0.00 0.00 43.56 4.24
2917 3117 3.082701 AGGGAGAGCCAGAGCAGC 61.083 66.667 0.00 0.00 43.56 5.25
2918 3118 3.397439 GGGAGAGCCAGAGCAGCA 61.397 66.667 0.00 0.00 43.56 4.41
2919 3119 2.187424 GGAGAGCCAGAGCAGCAG 59.813 66.667 0.00 0.00 43.56 4.24
2920 3120 2.512057 GAGAGCCAGAGCAGCAGC 60.512 66.667 0.00 0.00 43.56 5.25
2921 3121 3.312285 GAGAGCCAGAGCAGCAGCA 62.312 63.158 3.17 0.00 45.49 4.41
2922 3122 2.359602 GAGCCAGAGCAGCAGCAA 60.360 61.111 3.17 0.00 45.49 3.91
2923 3123 2.672307 AGCCAGAGCAGCAGCAAC 60.672 61.111 3.17 0.00 45.49 4.17
2924 3124 2.981909 GCCAGAGCAGCAGCAACA 60.982 61.111 3.17 0.00 45.49 3.33
2925 3125 2.979197 GCCAGAGCAGCAGCAACAG 61.979 63.158 3.17 0.00 45.49 3.16
2926 3126 1.302271 CCAGAGCAGCAGCAACAGA 60.302 57.895 3.17 0.00 45.49 3.41
2927 3127 0.677098 CCAGAGCAGCAGCAACAGAT 60.677 55.000 3.17 0.00 45.49 2.90
2928 3128 1.166129 CAGAGCAGCAGCAACAGATT 58.834 50.000 3.17 0.00 45.49 2.40
2929 3129 1.540267 CAGAGCAGCAGCAACAGATTT 59.460 47.619 3.17 0.00 45.49 2.17
2930 3130 1.540267 AGAGCAGCAGCAACAGATTTG 59.460 47.619 3.17 0.00 45.49 2.32
2931 3131 0.601558 AGCAGCAGCAACAGATTTGG 59.398 50.000 3.17 0.00 45.49 3.28
2932 3132 1.012486 GCAGCAGCAACAGATTTGGC 61.012 55.000 0.00 0.00 41.58 4.52
2933 3133 0.601558 CAGCAGCAACAGATTTGGCT 59.398 50.000 0.00 0.00 36.99 4.75
2936 3136 3.444850 AGCAACAGATTTGGCTGGT 57.555 47.368 0.00 0.00 40.20 4.00
2937 3137 2.584835 AGCAACAGATTTGGCTGGTA 57.415 45.000 0.00 0.00 40.20 3.25
2938 3138 3.091633 AGCAACAGATTTGGCTGGTAT 57.908 42.857 0.00 0.00 40.20 2.73
2939 3139 2.756760 AGCAACAGATTTGGCTGGTATG 59.243 45.455 0.00 0.00 40.20 2.39
2940 3140 2.159198 GCAACAGATTTGGCTGGTATGG 60.159 50.000 0.00 0.00 40.20 2.74
2941 3141 3.355378 CAACAGATTTGGCTGGTATGGA 58.645 45.455 0.00 0.00 40.20 3.41
2942 3142 3.004752 ACAGATTTGGCTGGTATGGAC 57.995 47.619 0.00 0.00 40.20 4.02
2943 3143 2.308570 ACAGATTTGGCTGGTATGGACA 59.691 45.455 0.00 0.00 40.20 4.02
2944 3144 2.684881 CAGATTTGGCTGGTATGGACAC 59.315 50.000 0.00 0.00 32.26 3.67
2945 3145 2.024414 GATTTGGCTGGTATGGACACC 58.976 52.381 0.00 0.00 39.20 4.16
2946 3146 0.322098 TTTGGCTGGTATGGACACCG 60.322 55.000 0.00 0.00 41.88 4.94
2947 3147 1.485294 TTGGCTGGTATGGACACCGT 61.485 55.000 0.00 0.00 41.88 4.83
2948 3148 1.153429 GGCTGGTATGGACACCGTC 60.153 63.158 0.00 0.00 41.88 4.79
2949 3149 1.518572 GCTGGTATGGACACCGTCG 60.519 63.158 0.00 0.00 41.88 5.12
2950 3150 1.518572 CTGGTATGGACACCGTCGC 60.519 63.158 0.00 0.00 41.88 5.19
2951 3151 1.945354 CTGGTATGGACACCGTCGCT 61.945 60.000 0.00 0.00 41.88 4.93
2952 3152 1.518572 GGTATGGACACCGTCGCTG 60.519 63.158 0.00 0.00 32.65 5.18
2953 3153 1.509463 GTATGGACACCGTCGCTGA 59.491 57.895 0.00 0.00 32.65 4.26
2954 3154 0.108992 GTATGGACACCGTCGCTGAA 60.109 55.000 0.00 0.00 32.65 3.02
2955 3155 0.172578 TATGGACACCGTCGCTGAAG 59.827 55.000 0.00 0.00 32.65 3.02
2956 3156 2.432628 GGACACCGTCGCTGAAGG 60.433 66.667 8.46 8.46 37.23 3.46
2957 3157 2.432628 GACACCGTCGCTGAAGGG 60.433 66.667 13.06 5.74 35.56 3.95
2958 3158 3.934391 GACACCGTCGCTGAAGGGG 62.934 68.421 10.23 10.23 40.37 4.79
2962 3162 4.821589 CGTCGCTGAAGGGGCCTC 62.822 72.222 0.84 0.00 0.00 4.70
2963 3163 4.821589 GTCGCTGAAGGGGCCTCG 62.822 72.222 0.84 0.00 0.00 4.63
2966 3166 4.847444 GCTGAAGGGGCCTCGCTC 62.847 72.222 0.84 0.89 34.92 5.03
2967 3167 3.080121 CTGAAGGGGCCTCGCTCT 61.080 66.667 0.84 0.00 34.92 4.09
2968 3168 3.382803 CTGAAGGGGCCTCGCTCTG 62.383 68.421 0.84 1.07 34.92 3.35
2969 3169 4.168291 GAAGGGGCCTCGCTCTGG 62.168 72.222 0.84 0.00 34.92 3.86
2987 3187 4.247380 GGGAGAGCCGCCATGGAG 62.247 72.222 18.40 13.36 42.00 3.86
2988 3188 3.157252 GGAGAGCCGCCATGGAGA 61.157 66.667 18.40 0.00 42.00 3.71
2989 3189 2.515071 GGAGAGCCGCCATGGAGAT 61.515 63.158 18.40 3.84 42.00 2.75
2990 3190 1.301558 GAGAGCCGCCATGGAGATG 60.302 63.158 18.40 0.97 42.00 2.90
2991 3191 2.037620 GAGAGCCGCCATGGAGATGT 62.038 60.000 18.40 2.27 42.00 3.06
2992 3192 1.596477 GAGCCGCCATGGAGATGTC 60.596 63.158 18.40 5.94 42.00 3.06
2993 3193 2.969238 GCCGCCATGGAGATGTCG 60.969 66.667 18.40 8.17 42.00 4.35
2994 3194 2.501128 CCGCCATGGAGATGTCGT 59.499 61.111 18.40 0.00 42.00 4.34
2995 3195 1.153369 CCGCCATGGAGATGTCGTT 60.153 57.895 18.40 0.00 42.00 3.85
2996 3196 1.431488 CCGCCATGGAGATGTCGTTG 61.431 60.000 18.40 0.00 42.00 4.10
2997 3197 1.431488 CGCCATGGAGATGTCGTTGG 61.431 60.000 18.40 5.59 0.00 3.77
2998 3198 0.392998 GCCATGGAGATGTCGTTGGT 60.393 55.000 18.40 0.00 31.16 3.67
2999 3199 1.372582 CCATGGAGATGTCGTTGGTG 58.627 55.000 5.56 0.00 0.00 4.17
3000 3200 1.372582 CATGGAGATGTCGTTGGTGG 58.627 55.000 0.00 0.00 0.00 4.61
3001 3201 0.392998 ATGGAGATGTCGTTGGTGGC 60.393 55.000 0.00 0.00 0.00 5.01
3002 3202 2.100631 GGAGATGTCGTTGGTGGCG 61.101 63.158 0.00 0.00 0.00 5.69
3003 3203 2.740714 GAGATGTCGTTGGTGGCGC 61.741 63.158 0.00 0.00 0.00 6.53
3004 3204 3.799755 GATGTCGTTGGTGGCGCC 61.800 66.667 22.73 22.73 37.90 6.53
3010 3210 3.723348 GTTGGTGGCGCCGACTTC 61.723 66.667 26.79 8.50 46.15 3.01
3016 3216 3.818787 GGCGCCGACTTCGAGGTA 61.819 66.667 12.58 0.00 43.02 3.08
3017 3217 2.278013 GCGCCGACTTCGAGGTAG 60.278 66.667 0.00 0.00 43.02 3.18
3018 3218 2.278013 CGCCGACTTCGAGGTAGC 60.278 66.667 0.00 6.13 43.02 3.58
3019 3219 2.104530 GCCGACTTCGAGGTAGCC 59.895 66.667 0.00 0.00 43.02 3.93
3020 3220 2.408022 CCGACTTCGAGGTAGCCG 59.592 66.667 0.00 0.00 43.02 5.52
3021 3221 2.278013 CGACTTCGAGGTAGCCGC 60.278 66.667 0.00 0.00 43.02 6.53
3022 3222 2.762234 CGACTTCGAGGTAGCCGCT 61.762 63.158 0.00 0.00 43.02 5.52
3023 3223 1.064458 GACTTCGAGGTAGCCGCTC 59.936 63.158 0.00 0.00 0.00 5.03
3024 3224 2.339100 GACTTCGAGGTAGCCGCTCC 62.339 65.000 0.00 0.00 0.00 4.70
3025 3225 2.361992 TTCGAGGTAGCCGCTCCA 60.362 61.111 0.00 0.00 0.00 3.86
3026 3226 1.739338 CTTCGAGGTAGCCGCTCCAT 61.739 60.000 0.00 0.00 0.00 3.41
3027 3227 2.016393 TTCGAGGTAGCCGCTCCATG 62.016 60.000 0.00 0.00 0.00 3.66
3028 3228 2.423446 GAGGTAGCCGCTCCATGG 59.577 66.667 4.97 4.97 0.00 3.66
3029 3229 3.164269 AGGTAGCCGCTCCATGGG 61.164 66.667 13.02 3.69 0.00 4.00
3040 3240 4.900704 CCATGGGGGTGCGGGATG 62.901 72.222 2.85 0.00 0.00 3.51
3041 3241 4.900704 CATGGGGGTGCGGGATGG 62.901 72.222 0.00 0.00 0.00 3.51
3069 3269 4.681978 GTGCCGGCAGGTCGAGTT 62.682 66.667 33.73 0.00 40.50 3.01
3070 3270 2.992689 TGCCGGCAGGTCGAGTTA 60.993 61.111 29.03 0.00 40.50 2.24
3071 3271 2.263540 GCCGGCAGGTCGAGTTAA 59.736 61.111 24.80 0.00 40.50 2.01
3072 3272 1.810030 GCCGGCAGGTCGAGTTAAG 60.810 63.158 24.80 0.00 40.50 1.85
3073 3273 1.153628 CCGGCAGGTCGAGTTAAGG 60.154 63.158 0.00 0.00 0.00 2.69
3074 3274 1.601419 CCGGCAGGTCGAGTTAAGGA 61.601 60.000 0.00 0.00 0.00 3.36
3075 3275 0.179134 CGGCAGGTCGAGTTAAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
3076 3276 1.183549 GGCAGGTCGAGTTAAGGAGA 58.816 55.000 0.00 0.00 0.00 3.71
3077 3277 1.549170 GGCAGGTCGAGTTAAGGAGAA 59.451 52.381 0.00 0.00 0.00 2.87
3078 3278 2.417515 GGCAGGTCGAGTTAAGGAGAAG 60.418 54.545 0.00 0.00 0.00 2.85
3079 3279 2.417515 GCAGGTCGAGTTAAGGAGAAGG 60.418 54.545 0.00 0.00 0.00 3.46
3080 3280 2.826725 CAGGTCGAGTTAAGGAGAAGGT 59.173 50.000 0.00 0.00 0.00 3.50
3081 3281 2.826725 AGGTCGAGTTAAGGAGAAGGTG 59.173 50.000 0.00 0.00 0.00 4.00
3082 3282 2.608268 GTCGAGTTAAGGAGAAGGTGC 58.392 52.381 0.00 0.00 0.00 5.01
3083 3283 1.201647 TCGAGTTAAGGAGAAGGTGCG 59.798 52.381 0.00 0.00 0.00 5.34
3084 3284 1.201647 CGAGTTAAGGAGAAGGTGCGA 59.798 52.381 0.00 0.00 0.00 5.10
3085 3285 2.159226 CGAGTTAAGGAGAAGGTGCGAT 60.159 50.000 0.00 0.00 0.00 4.58
3086 3286 3.190874 GAGTTAAGGAGAAGGTGCGATG 58.809 50.000 0.00 0.00 0.00 3.84
3087 3287 2.567615 AGTTAAGGAGAAGGTGCGATGT 59.432 45.455 0.00 0.00 0.00 3.06
3088 3288 2.672961 TAAGGAGAAGGTGCGATGTG 57.327 50.000 0.00 0.00 0.00 3.21
3089 3289 0.976641 AAGGAGAAGGTGCGATGTGA 59.023 50.000 0.00 0.00 0.00 3.58
3090 3290 1.198713 AGGAGAAGGTGCGATGTGAT 58.801 50.000 0.00 0.00 0.00 3.06
3091 3291 1.134580 AGGAGAAGGTGCGATGTGATG 60.135 52.381 0.00 0.00 0.00 3.07
3092 3292 1.134699 GGAGAAGGTGCGATGTGATGA 60.135 52.381 0.00 0.00 0.00 2.92
3093 3293 2.200067 GAGAAGGTGCGATGTGATGAG 58.800 52.381 0.00 0.00 0.00 2.90
3094 3294 1.552337 AGAAGGTGCGATGTGATGAGT 59.448 47.619 0.00 0.00 0.00 3.41
3095 3295 1.662629 GAAGGTGCGATGTGATGAGTG 59.337 52.381 0.00 0.00 0.00 3.51
3096 3296 0.610174 AGGTGCGATGTGATGAGTGT 59.390 50.000 0.00 0.00 0.00 3.55
3097 3297 1.824852 AGGTGCGATGTGATGAGTGTA 59.175 47.619 0.00 0.00 0.00 2.90
3098 3298 2.233676 AGGTGCGATGTGATGAGTGTAA 59.766 45.455 0.00 0.00 0.00 2.41
3099 3299 3.000041 GGTGCGATGTGATGAGTGTAAA 59.000 45.455 0.00 0.00 0.00 2.01
3100 3300 3.435327 GGTGCGATGTGATGAGTGTAAAA 59.565 43.478 0.00 0.00 0.00 1.52
3101 3301 4.394795 GTGCGATGTGATGAGTGTAAAAC 58.605 43.478 0.00 0.00 0.00 2.43
3102 3302 3.435327 TGCGATGTGATGAGTGTAAAACC 59.565 43.478 0.00 0.00 0.00 3.27
3103 3303 3.684788 GCGATGTGATGAGTGTAAAACCT 59.315 43.478 0.00 0.00 0.00 3.50
3104 3304 4.201724 GCGATGTGATGAGTGTAAAACCTC 60.202 45.833 0.00 0.00 0.00 3.85
3105 3305 5.171476 CGATGTGATGAGTGTAAAACCTCT 58.829 41.667 0.00 0.00 0.00 3.69
3106 3306 5.639506 CGATGTGATGAGTGTAAAACCTCTT 59.360 40.000 0.00 0.00 0.00 2.85
3107 3307 6.147821 CGATGTGATGAGTGTAAAACCTCTTT 59.852 38.462 0.00 0.00 0.00 2.52
3108 3308 6.618287 TGTGATGAGTGTAAAACCTCTTTG 57.382 37.500 0.00 0.00 0.00 2.77
3109 3309 5.530915 TGTGATGAGTGTAAAACCTCTTTGG 59.469 40.000 0.00 0.00 42.93 3.28
3118 3318 2.032528 CCTCTTTGGTGGCGCTGA 59.967 61.111 7.64 0.00 0.00 4.26
3119 3319 2.037136 CCTCTTTGGTGGCGCTGAG 61.037 63.158 7.64 4.08 0.00 3.35
3120 3320 1.302033 CTCTTTGGTGGCGCTGAGT 60.302 57.895 7.64 0.00 0.00 3.41
3121 3321 0.037326 CTCTTTGGTGGCGCTGAGTA 60.037 55.000 7.64 0.00 0.00 2.59
3122 3322 0.037326 TCTTTGGTGGCGCTGAGTAG 60.037 55.000 7.64 0.00 0.00 2.57
3123 3323 1.003839 TTTGGTGGCGCTGAGTAGG 60.004 57.895 7.64 0.00 0.00 3.18
3124 3324 3.605749 TTGGTGGCGCTGAGTAGGC 62.606 63.158 7.64 0.00 0.00 3.93
3126 3326 3.775654 GTGGCGCTGAGTAGGCCT 61.776 66.667 11.78 11.78 46.97 5.19
3127 3327 3.461773 TGGCGCTGAGTAGGCCTC 61.462 66.667 9.68 0.21 46.97 4.70
3128 3328 4.577246 GGCGCTGAGTAGGCCTCG 62.577 72.222 9.68 6.75 43.64 4.63
3132 3332 3.622514 CTGAGTAGGCCTCGGCTT 58.377 61.111 9.68 2.45 43.64 4.35
3133 3333 1.439644 CTGAGTAGGCCTCGGCTTC 59.560 63.158 9.68 1.37 43.64 3.86
3134 3334 2.343163 CTGAGTAGGCCTCGGCTTCG 62.343 65.000 9.68 0.00 43.64 3.79
3135 3335 2.362632 AGTAGGCCTCGGCTTCGT 60.363 61.111 9.68 0.00 39.70 3.85
3136 3336 2.104530 GTAGGCCTCGGCTTCGTC 59.895 66.667 9.68 0.00 39.70 4.20
3137 3337 2.044252 TAGGCCTCGGCTTCGTCT 60.044 61.111 9.68 0.00 39.70 4.18
3138 3338 2.415608 TAGGCCTCGGCTTCGTCTG 61.416 63.158 9.68 0.00 39.70 3.51
3139 3339 2.831894 TAGGCCTCGGCTTCGTCTGA 62.832 60.000 9.68 0.00 39.70 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 47 5.450550 CGTGCTCTCCTTACATAATCTCACA 60.451 44.000 0.00 0.00 0.00 3.58
67 70 6.978659 TGTTACCATTACTCTAGATTTCTGCG 59.021 38.462 0.00 0.00 0.00 5.18
260 265 7.122715 TCTAAATTAGTTGTGGGGCACATATT 58.877 34.615 0.00 0.00 44.16 1.28
304 309 3.208747 GACTCCAAGTCAGGTCCAAAA 57.791 47.619 2.28 0.00 44.45 2.44
476 482 0.326427 AGATCTCCTTCCCTGCTGCT 60.326 55.000 0.00 0.00 0.00 4.24
504 510 1.538512 CACGACTCCTGACCGTCTTTA 59.461 52.381 0.00 0.00 33.96 1.85
528 535 0.244721 GAAGCATCCACCAAACCAGC 59.755 55.000 0.00 0.00 0.00 4.85
552 559 1.117994 CTCACCTGAGCTGCTCCATA 58.882 55.000 25.61 7.56 35.13 2.74
623 630 9.933723 TTAAATTACTTCAGTTACAGGTAGGTC 57.066 33.333 0.00 0.00 0.00 3.85
669 676 0.771755 GACCTTTGTGGAGGAGGGTT 59.228 55.000 0.00 0.00 39.25 4.11
693 701 0.259938 GGCCAGGAACATCCCAATCT 59.740 55.000 0.00 0.00 37.19 2.40
716 724 1.071542 TGACCAGATTCAAGGCGAACA 59.928 47.619 0.00 0.00 36.12 3.18
718 726 2.151202 GTTGACCAGATTCAAGGCGAA 58.849 47.619 0.00 0.00 36.15 4.70
746 754 3.444034 CAGTAAAGATCAGACGGACCTGA 59.556 47.826 6.84 6.84 46.02 3.86
905 914 2.017559 GAGGGGTGAATCGGGACTCG 62.018 65.000 0.00 0.00 40.90 4.18
914 1055 4.096003 CGCGTGGGAGGGGTGAAT 62.096 66.667 0.00 0.00 0.00 2.57
953 1094 3.942377 ATTGGGTGCGAGGCATGCA 62.942 57.895 21.36 0.00 41.91 3.96
1047 1194 2.370445 CCTTGGATCCAGCGGAGGT 61.370 63.158 21.71 0.00 34.05 3.85
1055 1202 4.776322 CCGCACGCCTTGGATCCA 62.776 66.667 11.44 11.44 0.00 3.41
1175 1336 2.759973 CAGGCCGCTGACCCTCTA 60.760 66.667 0.00 0.00 0.00 2.43
1197 1358 3.052081 GTCACACCTGACCTCGCT 58.948 61.111 0.00 0.00 41.06 4.93
1524 1700 3.582647 ACCACCACTAGTGTTGATGATGA 59.417 43.478 20.92 0.00 45.74 2.92
1533 1709 2.334977 TGATCCAACCACCACTAGTGT 58.665 47.619 21.18 7.09 45.74 3.55
1538 1714 4.474651 TCATCTAATGATCCAACCACCACT 59.525 41.667 0.00 0.00 33.59 4.00
1626 1802 2.910688 TTTCCTCCTATCCATGCGTC 57.089 50.000 0.00 0.00 0.00 5.19
1690 1869 6.698008 AGTTCACAGAAATCATGTGTTCAA 57.302 33.333 11.83 0.00 46.49 2.69
1709 1888 2.494073 TGTGAACCAAACACCCAAGTTC 59.506 45.455 0.00 0.00 37.45 3.01
1783 1968 8.710835 TTCTAATTGTACACGCTTTCATATGA 57.289 30.769 0.00 0.00 0.00 2.15
1802 1987 8.571336 GCATTAGTGGCAGAATAACATTCTAAT 58.429 33.333 1.26 0.00 0.00 1.73
2041 2228 2.900273 GAGGTCGGCATGGCTACA 59.100 61.111 22.76 2.54 0.00 2.74
2059 2246 1.809207 CGACCAACCCAATGATGCC 59.191 57.895 0.00 0.00 0.00 4.40
2096 2283 2.669569 CAACTCCCACAGCCACCG 60.670 66.667 0.00 0.00 0.00 4.94
2106 2293 2.192263 AGATCTTCCTCCACAACTCCC 58.808 52.381 0.00 0.00 0.00 4.30
2111 2298 4.074799 TCCCTTAGATCTTCCTCCACAA 57.925 45.455 0.00 0.00 0.00 3.33
2127 2314 6.126420 CCCTAGATACCGTCTATAGATCCCTT 60.126 46.154 5.57 0.00 38.71 3.95
2131 2318 5.528320 GTGCCCTAGATACCGTCTATAGATC 59.472 48.000 5.57 0.00 38.71 2.75
2144 2331 2.432146 CAACAGAGCAGTGCCCTAGATA 59.568 50.000 12.58 0.00 0.00 1.98
2148 2335 0.035317 CACAACAGAGCAGTGCCCTA 59.965 55.000 12.58 0.00 0.00 3.53
2191 2378 0.179111 TCTTATGGCTCACCGAAGCG 60.179 55.000 0.00 0.00 43.45 4.68
2195 2382 0.892755 AACGTCTTATGGCTCACCGA 59.107 50.000 0.00 0.00 39.70 4.69
2243 2430 9.732130 GCTATTAGAATCCCACTTGAGATTAAT 57.268 33.333 0.00 0.00 32.91 1.40
2309 2496 4.528206 ACCTCATGTGTTGTAGTCAGATCA 59.472 41.667 0.00 0.00 0.00 2.92
2310 2497 5.078411 ACCTCATGTGTTGTAGTCAGATC 57.922 43.478 0.00 0.00 0.00 2.75
2312 2499 6.413783 TTTACCTCATGTGTTGTAGTCAGA 57.586 37.500 0.00 0.00 0.00 3.27
2325 2512 6.483307 TCAGAGTCAACAGTTTTTACCTCATG 59.517 38.462 0.00 0.00 0.00 3.07
2376 2563 5.482908 GACACTAACACTCAGATTCCACAT 58.517 41.667 0.00 0.00 0.00 3.21
2389 2576 5.652744 ATGTTCAGTTTCGACACTAACAC 57.347 39.130 19.55 11.74 30.21 3.32
2395 2582 5.607119 ACCATTATGTTCAGTTTCGACAC 57.393 39.130 0.00 0.00 0.00 3.67
2410 2597 6.818142 GTGAAATGCCTTTTTGCTACCATTAT 59.182 34.615 0.00 0.00 0.00 1.28
2411 2598 6.162777 GTGAAATGCCTTTTTGCTACCATTA 58.837 36.000 0.00 0.00 0.00 1.90
2422 2609 7.378181 CCTAAACTACATGTGAAATGCCTTTT 58.622 34.615 9.11 0.00 0.00 2.27
2463 2650 1.152830 GGGGGTGCAGGTTGAAGAA 59.847 57.895 0.00 0.00 0.00 2.52
2761 2961 2.999507 AGCTACACTTCAGTCGACTG 57.000 50.000 34.76 34.76 45.08 3.51
2762 2962 5.642686 GATTTAGCTACACTTCAGTCGACT 58.357 41.667 13.58 13.58 0.00 4.18
2763 2963 4.496183 CGATTTAGCTACACTTCAGTCGAC 59.504 45.833 7.70 7.70 0.00 4.20
2764 2964 4.438336 CCGATTTAGCTACACTTCAGTCGA 60.438 45.833 7.18 0.00 0.00 4.20
2765 2965 3.791887 CCGATTTAGCTACACTTCAGTCG 59.208 47.826 0.00 0.00 0.00 4.18
2766 2966 4.995124 TCCGATTTAGCTACACTTCAGTC 58.005 43.478 0.00 0.00 0.00 3.51
2767 2967 4.705507 TCTCCGATTTAGCTACACTTCAGT 59.294 41.667 0.00 0.00 0.00 3.41
2768 2968 5.250235 TCTCCGATTTAGCTACACTTCAG 57.750 43.478 0.00 0.00 0.00 3.02
2769 2969 5.417894 TCTTCTCCGATTTAGCTACACTTCA 59.582 40.000 0.00 0.00 0.00 3.02
2770 2970 5.892568 TCTTCTCCGATTTAGCTACACTTC 58.107 41.667 0.00 0.00 0.00 3.01
2771 2971 5.680151 GCTCTTCTCCGATTTAGCTACACTT 60.680 44.000 0.00 0.00 0.00 3.16
2772 2972 4.202070 GCTCTTCTCCGATTTAGCTACACT 60.202 45.833 0.00 0.00 0.00 3.55
2773 2973 4.045783 GCTCTTCTCCGATTTAGCTACAC 58.954 47.826 0.00 0.00 0.00 2.90
2774 2974 3.068307 GGCTCTTCTCCGATTTAGCTACA 59.932 47.826 0.00 0.00 0.00 2.74
2775 2975 3.644823 GGCTCTTCTCCGATTTAGCTAC 58.355 50.000 0.00 0.00 0.00 3.58
2777 2977 2.900716 GGCTCTTCTCCGATTTAGCT 57.099 50.000 0.00 0.00 0.00 3.32
2786 2986 2.817396 GTGCTGCGGCTCTTCTCC 60.817 66.667 20.27 0.00 39.59 3.71
2787 2987 3.184683 CGTGCTGCGGCTCTTCTC 61.185 66.667 20.27 1.64 39.59 2.87
2788 2988 3.639541 CTCGTGCTGCGGCTCTTCT 62.640 63.158 20.27 0.00 41.72 2.85
2789 2989 3.184683 CTCGTGCTGCGGCTCTTC 61.185 66.667 20.27 5.85 41.72 2.87
2790 2990 3.996124 ACTCGTGCTGCGGCTCTT 61.996 61.111 20.27 0.00 41.72 2.85
2791 2991 4.731612 CACTCGTGCTGCGGCTCT 62.732 66.667 20.27 0.00 41.72 4.09
2792 2992 4.724602 TCACTCGTGCTGCGGCTC 62.725 66.667 20.27 14.73 41.72 4.70
2793 2993 4.731612 CTCACTCGTGCTGCGGCT 62.732 66.667 20.27 0.00 41.72 5.52
2797 2997 4.767255 CCCCCTCACTCGTGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
2798 2998 2.997315 TCCCCCTCACTCGTGCTG 60.997 66.667 0.00 0.00 0.00 4.41
2799 2999 2.681778 CTCCCCCTCACTCGTGCT 60.682 66.667 0.00 0.00 0.00 4.40
2800 3000 2.680352 TCTCCCCCTCACTCGTGC 60.680 66.667 0.00 0.00 0.00 5.34
2801 3001 2.716017 GCTCTCCCCCTCACTCGTG 61.716 68.421 0.00 0.00 0.00 4.35
2802 3002 2.363147 GCTCTCCCCCTCACTCGT 60.363 66.667 0.00 0.00 0.00 4.18
2803 3003 2.363018 TGCTCTCCCCCTCACTCG 60.363 66.667 0.00 0.00 0.00 4.18
2804 3004 2.730524 GCTGCTCTCCCCCTCACTC 61.731 68.421 0.00 0.00 0.00 3.51
2805 3005 2.686835 GCTGCTCTCCCCCTCACT 60.687 66.667 0.00 0.00 0.00 3.41
2806 3006 3.005539 TGCTGCTCTCCCCCTCAC 61.006 66.667 0.00 0.00 0.00 3.51
2807 3007 2.686470 CTGCTGCTCTCCCCCTCA 60.686 66.667 0.00 0.00 0.00 3.86
2808 3008 4.173924 GCTGCTGCTCTCCCCCTC 62.174 72.222 8.53 0.00 36.03 4.30
2810 3010 4.486503 CTGCTGCTGCTCTCCCCC 62.487 72.222 17.00 0.00 40.48 5.40
2812 3012 4.405671 TGCTGCTGCTGCTCTCCC 62.406 66.667 27.67 3.30 40.48 4.30
2813 3013 3.126225 GTGCTGCTGCTGCTCTCC 61.126 66.667 27.67 12.40 40.48 3.71
2814 3014 3.488978 CGTGCTGCTGCTGCTCTC 61.489 66.667 27.67 17.88 40.48 3.20
2815 3015 3.936204 CTCGTGCTGCTGCTGCTCT 62.936 63.158 27.67 0.00 40.48 4.09
2816 3016 3.488978 CTCGTGCTGCTGCTGCTC 61.489 66.667 27.67 23.41 40.48 4.26
2817 3017 4.311445 ACTCGTGCTGCTGCTGCT 62.311 61.111 27.67 8.50 40.48 4.24
2818 3018 4.086178 CACTCGTGCTGCTGCTGC 62.086 66.667 22.51 22.51 40.48 5.25
2819 3019 2.356673 TCACTCGTGCTGCTGCTG 60.357 61.111 17.00 9.33 40.48 4.41
2820 3020 2.048409 CTCACTCGTGCTGCTGCT 60.048 61.111 17.00 0.00 40.48 4.24
2821 3021 3.786586 GCTCACTCGTGCTGCTGC 61.787 66.667 8.89 8.89 40.20 5.25
2822 3022 3.476646 CGCTCACTCGTGCTGCTG 61.477 66.667 0.00 0.00 0.00 4.41
2823 3023 3.623486 CTCGCTCACTCGTGCTGCT 62.623 63.158 0.00 0.00 0.00 4.24
2824 3024 3.177920 CTCGCTCACTCGTGCTGC 61.178 66.667 0.00 0.00 0.00 5.25
2825 3025 1.513800 CTCTCGCTCACTCGTGCTG 60.514 63.158 0.00 0.00 0.00 4.41
2826 3026 2.874019 CTCTCGCTCACTCGTGCT 59.126 61.111 0.00 0.00 0.00 4.40
2827 3027 2.878520 GCTCTCGCTCACTCGTGC 60.879 66.667 0.00 0.00 0.00 5.34
2828 3028 1.513800 CAGCTCTCGCTCACTCGTG 60.514 63.158 0.00 0.00 45.15 4.35
2829 3029 2.695759 CCAGCTCTCGCTCACTCGT 61.696 63.158 0.00 0.00 45.15 4.18
2830 3030 2.101965 CCAGCTCTCGCTCACTCG 59.898 66.667 0.00 0.00 45.15 4.18
2831 3031 1.433064 CTCCAGCTCTCGCTCACTC 59.567 63.158 0.00 0.00 45.15 3.51
2832 3032 2.709883 GCTCCAGCTCTCGCTCACT 61.710 63.158 0.00 0.00 45.15 3.41
2833 3033 2.202730 GCTCCAGCTCTCGCTCAC 60.203 66.667 0.00 0.00 45.15 3.51
2834 3034 2.677875 TGCTCCAGCTCTCGCTCA 60.678 61.111 0.00 0.00 45.15 4.26
2835 3035 2.104729 CTGCTCCAGCTCTCGCTC 59.895 66.667 0.00 0.00 45.15 5.03
2844 3044 3.128188 CTGCTGCTGCTGCTCCAG 61.128 66.667 27.67 16.84 40.48 3.86
2864 3064 2.911439 CTTCGGCTCTCGCTCACTCG 62.911 65.000 0.00 0.00 39.05 4.18
2865 3065 1.226547 CTTCGGCTCTCGCTCACTC 60.227 63.158 0.00 0.00 39.05 3.51
2866 3066 2.881389 CTTCGGCTCTCGCTCACT 59.119 61.111 0.00 0.00 39.05 3.41
2867 3067 2.883253 GCTTCGGCTCTCGCTCAC 60.883 66.667 0.00 0.00 39.05 3.51
2868 3068 3.348055 CTGCTTCGGCTCTCGCTCA 62.348 63.158 0.00 0.00 42.37 4.26
2869 3069 1.994507 TACTGCTTCGGCTCTCGCTC 61.995 60.000 0.00 0.00 42.37 5.03
2870 3070 1.999071 CTACTGCTTCGGCTCTCGCT 61.999 60.000 0.00 0.00 42.37 4.93
2871 3071 1.587613 CTACTGCTTCGGCTCTCGC 60.588 63.158 0.00 0.00 42.37 5.03
2872 3072 1.587613 GCTACTGCTTCGGCTCTCG 60.588 63.158 0.00 0.00 42.37 4.04
2873 3073 0.527385 CTGCTACTGCTTCGGCTCTC 60.527 60.000 0.00 0.00 42.37 3.20
2874 3074 1.254284 ACTGCTACTGCTTCGGCTCT 61.254 55.000 0.00 0.00 42.37 4.09
2875 3075 0.456221 TACTGCTACTGCTTCGGCTC 59.544 55.000 0.00 0.00 42.37 4.70
2876 3076 0.895530 TTACTGCTACTGCTTCGGCT 59.104 50.000 0.00 0.00 42.37 5.52
2877 3077 1.000145 GTTACTGCTACTGCTTCGGC 59.000 55.000 0.00 0.00 40.48 5.54
2878 3078 1.269166 CGTTACTGCTACTGCTTCGG 58.731 55.000 0.00 0.00 40.48 4.30
2879 3079 0.640768 GCGTTACTGCTACTGCTTCG 59.359 55.000 0.00 0.00 40.48 3.79
2880 3080 0.640768 CGCGTTACTGCTACTGCTTC 59.359 55.000 0.00 0.00 40.48 3.86
2881 3081 0.242825 TCGCGTTACTGCTACTGCTT 59.757 50.000 5.77 0.00 40.48 3.91
2882 3082 0.179161 CTCGCGTTACTGCTACTGCT 60.179 55.000 5.77 0.00 40.48 4.24
2883 3083 1.140407 CCTCGCGTTACTGCTACTGC 61.140 60.000 5.77 0.00 40.20 4.40
2884 3084 0.525668 CCCTCGCGTTACTGCTACTG 60.526 60.000 5.77 0.00 0.00 2.74
2885 3085 0.679002 TCCCTCGCGTTACTGCTACT 60.679 55.000 5.77 0.00 0.00 2.57
2886 3086 0.248539 CTCCCTCGCGTTACTGCTAC 60.249 60.000 5.77 0.00 0.00 3.58
2887 3087 0.393402 TCTCCCTCGCGTTACTGCTA 60.393 55.000 5.77 0.00 0.00 3.49
2888 3088 1.658686 CTCTCCCTCGCGTTACTGCT 61.659 60.000 5.77 0.00 0.00 4.24
2889 3089 1.226717 CTCTCCCTCGCGTTACTGC 60.227 63.158 5.77 0.00 0.00 4.40
2890 3090 1.226717 GCTCTCCCTCGCGTTACTG 60.227 63.158 5.77 0.00 0.00 2.74
2891 3091 2.416432 GGCTCTCCCTCGCGTTACT 61.416 63.158 5.77 0.00 0.00 2.24
2892 3092 2.104530 GGCTCTCCCTCGCGTTAC 59.895 66.667 5.77 0.00 0.00 2.50
2893 3093 2.361992 TGGCTCTCCCTCGCGTTA 60.362 61.111 5.77 0.00 0.00 3.18
2894 3094 3.764466 CTGGCTCTCCCTCGCGTT 61.764 66.667 5.77 0.00 0.00 4.84
2895 3095 4.742649 TCTGGCTCTCCCTCGCGT 62.743 66.667 5.77 0.00 0.00 6.01
2896 3096 3.898509 CTCTGGCTCTCCCTCGCG 61.899 72.222 0.00 0.00 0.00 5.87
2897 3097 4.219999 GCTCTGGCTCTCCCTCGC 62.220 72.222 0.00 0.00 35.22 5.03
2898 3098 2.757508 TGCTCTGGCTCTCCCTCG 60.758 66.667 0.00 0.00 39.59 4.63
2899 3099 3.092780 GCTGCTCTGGCTCTCCCTC 62.093 68.421 0.00 0.00 39.59 4.30
2900 3100 3.082701 GCTGCTCTGGCTCTCCCT 61.083 66.667 0.00 0.00 39.59 4.20
2901 3101 3.388703 CTGCTGCTCTGGCTCTCCC 62.389 68.421 0.00 0.00 39.59 4.30
2902 3102 2.187424 CTGCTGCTCTGGCTCTCC 59.813 66.667 0.00 0.00 39.59 3.71
2903 3103 2.512057 GCTGCTGCTCTGGCTCTC 60.512 66.667 8.53 0.00 39.59 3.20
2904 3104 2.891928 TTGCTGCTGCTCTGGCTCT 61.892 57.895 17.00 0.00 40.48 4.09
2905 3105 2.359602 TTGCTGCTGCTCTGGCTC 60.360 61.111 17.00 0.00 40.48 4.70
2906 3106 2.672307 GTTGCTGCTGCTCTGGCT 60.672 61.111 17.00 0.00 40.48 4.75
2907 3107 2.979197 CTGTTGCTGCTGCTCTGGC 61.979 63.158 17.00 1.05 40.48 4.85
2908 3108 0.677098 ATCTGTTGCTGCTGCTCTGG 60.677 55.000 17.00 5.21 40.48 3.86
2909 3109 1.166129 AATCTGTTGCTGCTGCTCTG 58.834 50.000 17.00 12.75 40.48 3.35
2910 3110 1.540267 CAAATCTGTTGCTGCTGCTCT 59.460 47.619 17.00 0.00 40.48 4.09
2911 3111 1.402456 CCAAATCTGTTGCTGCTGCTC 60.402 52.381 17.00 10.19 40.48 4.26
2912 3112 0.601558 CCAAATCTGTTGCTGCTGCT 59.398 50.000 17.00 0.00 40.48 4.24
2913 3113 1.012486 GCCAAATCTGTTGCTGCTGC 61.012 55.000 8.89 8.89 40.20 5.25
2914 3114 0.601558 AGCCAAATCTGTTGCTGCTG 59.398 50.000 0.00 0.00 31.70 4.41
2915 3115 0.601558 CAGCCAAATCTGTTGCTGCT 59.398 50.000 0.00 0.00 43.96 4.24
2916 3116 3.117589 CAGCCAAATCTGTTGCTGC 57.882 52.632 0.00 0.00 43.96 5.25
2918 3118 2.584835 TACCAGCCAAATCTGTTGCT 57.415 45.000 0.00 0.00 32.32 3.91
2919 3119 2.159198 CCATACCAGCCAAATCTGTTGC 60.159 50.000 0.00 0.00 32.32 4.17
2920 3120 3.129287 GTCCATACCAGCCAAATCTGTTG 59.871 47.826 0.00 0.00 32.32 3.33
2921 3121 3.245229 TGTCCATACCAGCCAAATCTGTT 60.245 43.478 0.00 0.00 32.32 3.16
2922 3122 2.308570 TGTCCATACCAGCCAAATCTGT 59.691 45.455 0.00 0.00 32.32 3.41
2923 3123 2.684881 GTGTCCATACCAGCCAAATCTG 59.315 50.000 0.00 0.00 0.00 2.90
2924 3124 2.357154 GGTGTCCATACCAGCCAAATCT 60.357 50.000 0.00 0.00 40.54 2.40
2925 3125 2.024414 GGTGTCCATACCAGCCAAATC 58.976 52.381 0.00 0.00 40.54 2.17
2926 3126 1.681780 CGGTGTCCATACCAGCCAAAT 60.682 52.381 0.00 0.00 40.89 2.32
2927 3127 0.322098 CGGTGTCCATACCAGCCAAA 60.322 55.000 0.00 0.00 40.89 3.28
2928 3128 1.298340 CGGTGTCCATACCAGCCAA 59.702 57.895 0.00 0.00 40.89 4.52
2929 3129 1.895020 GACGGTGTCCATACCAGCCA 61.895 60.000 0.00 0.00 40.89 4.75
2930 3130 1.153429 GACGGTGTCCATACCAGCC 60.153 63.158 0.00 0.00 40.89 4.85
2931 3131 1.518572 CGACGGTGTCCATACCAGC 60.519 63.158 0.00 0.00 40.89 4.85
2932 3132 1.518572 GCGACGGTGTCCATACCAG 60.519 63.158 0.00 0.00 40.89 4.00
2933 3133 1.980232 AGCGACGGTGTCCATACCA 60.980 57.895 0.00 0.00 40.89 3.25
2934 3134 1.518572 CAGCGACGGTGTCCATACC 60.519 63.158 18.54 0.00 37.37 2.73
2935 3135 0.108992 TTCAGCGACGGTGTCCATAC 60.109 55.000 24.75 0.00 32.43 2.39
2936 3136 0.172578 CTTCAGCGACGGTGTCCATA 59.827 55.000 24.75 4.13 32.43 2.74
2937 3137 1.079819 CTTCAGCGACGGTGTCCAT 60.080 57.895 24.75 0.00 32.43 3.41
2938 3138 2.338620 CTTCAGCGACGGTGTCCA 59.661 61.111 24.75 10.73 32.43 4.02
2939 3139 2.432628 CCTTCAGCGACGGTGTCC 60.433 66.667 24.75 0.00 32.43 4.02
2940 3140 2.432628 CCCTTCAGCGACGGTGTC 60.433 66.667 24.75 0.00 32.43 3.67
2941 3141 4.003788 CCCCTTCAGCGACGGTGT 62.004 66.667 24.75 0.00 32.43 4.16
2945 3145 4.821589 GAGGCCCCTTCAGCGACG 62.822 72.222 0.00 0.00 0.00 5.12
2946 3146 4.821589 CGAGGCCCCTTCAGCGAC 62.822 72.222 0.00 0.00 0.00 5.19
2949 3149 4.847444 GAGCGAGGCCCCTTCAGC 62.847 72.222 0.00 0.00 0.00 4.26
2950 3150 3.080121 AGAGCGAGGCCCCTTCAG 61.080 66.667 0.00 0.00 0.00 3.02
2951 3151 3.393970 CAGAGCGAGGCCCCTTCA 61.394 66.667 0.00 0.00 0.00 3.02
2952 3152 4.168291 CCAGAGCGAGGCCCCTTC 62.168 72.222 0.00 0.00 0.00 3.46
2959 3159 2.837291 CTCTCCCCCAGAGCGAGG 60.837 72.222 0.00 0.00 42.56 4.63
2970 3170 4.247380 CTCCATGGCGGCTCTCCC 62.247 72.222 11.43 0.00 33.14 4.30
2971 3171 2.515071 ATCTCCATGGCGGCTCTCC 61.515 63.158 11.43 0.00 33.14 3.71
2972 3172 1.301558 CATCTCCATGGCGGCTCTC 60.302 63.158 11.43 0.00 33.14 3.20
2973 3173 2.037620 GACATCTCCATGGCGGCTCT 62.038 60.000 11.43 0.00 33.82 4.09
2974 3174 1.596477 GACATCTCCATGGCGGCTC 60.596 63.158 11.43 0.00 33.82 4.70
2975 3175 2.507944 GACATCTCCATGGCGGCT 59.492 61.111 11.43 0.00 33.82 5.52
2979 3179 0.392998 ACCAACGACATCTCCATGGC 60.393 55.000 6.96 0.00 34.14 4.40
2980 3180 1.372582 CACCAACGACATCTCCATGG 58.627 55.000 4.97 4.97 33.82 3.66
2981 3181 1.372582 CCACCAACGACATCTCCATG 58.627 55.000 0.00 0.00 35.92 3.66
2982 3182 0.392998 GCCACCAACGACATCTCCAT 60.393 55.000 0.00 0.00 0.00 3.41
2983 3183 1.003839 GCCACCAACGACATCTCCA 60.004 57.895 0.00 0.00 0.00 3.86
2984 3184 2.100631 CGCCACCAACGACATCTCC 61.101 63.158 0.00 0.00 0.00 3.71
2985 3185 2.740714 GCGCCACCAACGACATCTC 61.741 63.158 0.00 0.00 0.00 2.75
2986 3186 2.742372 GCGCCACCAACGACATCT 60.742 61.111 0.00 0.00 0.00 2.90
2987 3187 3.799755 GGCGCCACCAACGACATC 61.800 66.667 24.80 0.00 38.80 3.06
2993 3193 3.723348 GAAGTCGGCGCCACCAAC 61.723 66.667 28.98 17.94 39.03 3.77
2999 3199 3.753070 CTACCTCGAAGTCGGCGCC 62.753 68.421 19.07 19.07 40.29 6.53
3000 3200 2.278013 CTACCTCGAAGTCGGCGC 60.278 66.667 0.00 0.00 40.29 6.53
3001 3201 2.278013 GCTACCTCGAAGTCGGCG 60.278 66.667 0.00 0.00 40.29 6.46
3002 3202 2.104530 GGCTACCTCGAAGTCGGC 59.895 66.667 0.11 0.00 40.29 5.54
3003 3203 2.408022 CGGCTACCTCGAAGTCGG 59.592 66.667 1.70 0.00 38.38 4.79
3004 3204 2.278013 GCGGCTACCTCGAAGTCG 60.278 66.667 5.27 5.27 44.66 4.18
3005 3205 1.064458 GAGCGGCTACCTCGAAGTC 59.936 63.158 0.60 0.00 0.00 3.01
3006 3206 2.416432 GGAGCGGCTACCTCGAAGT 61.416 63.158 0.60 0.00 0.00 3.01
3007 3207 1.739338 ATGGAGCGGCTACCTCGAAG 61.739 60.000 10.28 0.00 0.00 3.79
3008 3208 1.756950 ATGGAGCGGCTACCTCGAA 60.757 57.895 10.28 0.00 0.00 3.71
3009 3209 2.123854 ATGGAGCGGCTACCTCGA 60.124 61.111 10.28 0.00 0.00 4.04
3010 3210 2.028190 CATGGAGCGGCTACCTCG 59.972 66.667 10.28 0.00 0.00 4.63
3011 3211 2.423446 CCATGGAGCGGCTACCTC 59.577 66.667 5.56 0.00 0.00 3.85
3012 3212 3.164269 CCCATGGAGCGGCTACCT 61.164 66.667 15.22 0.00 0.00 3.08
3013 3213 4.256180 CCCCATGGAGCGGCTACC 62.256 72.222 15.22 10.35 0.00 3.18
3014 3214 4.256180 CCCCCATGGAGCGGCTAC 62.256 72.222 15.22 4.92 35.39 3.58
3015 3215 4.815973 ACCCCCATGGAGCGGCTA 62.816 66.667 15.22 0.00 38.00 3.93
3023 3223 4.900704 CATCCCGCACCCCCATGG 62.901 72.222 4.14 4.14 41.37 3.66
3024 3224 4.900704 CCATCCCGCACCCCCATG 62.901 72.222 0.00 0.00 0.00 3.66
3034 3234 4.873129 CGACGGTGCTCCATCCCG 62.873 72.222 5.52 0.00 46.93 5.14
3035 3235 4.530857 CCGACGGTGCTCCATCCC 62.531 72.222 5.48 0.00 0.00 3.85
3036 3236 3.771160 ACCGACGGTGCTCCATCC 61.771 66.667 21.02 0.00 32.98 3.51
3052 3252 2.775032 TTAACTCGACCTGCCGGCAC 62.775 60.000 29.03 16.03 0.00 5.01
3053 3253 2.501223 CTTAACTCGACCTGCCGGCA 62.501 60.000 30.59 30.59 0.00 5.69
3054 3254 1.810030 CTTAACTCGACCTGCCGGC 60.810 63.158 22.73 22.73 0.00 6.13
3055 3255 1.153628 CCTTAACTCGACCTGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
3056 3256 0.179134 CTCCTTAACTCGACCTGCCG 60.179 60.000 0.00 0.00 0.00 5.69
3057 3257 1.183549 TCTCCTTAACTCGACCTGCC 58.816 55.000 0.00 0.00 0.00 4.85
3058 3258 2.417515 CCTTCTCCTTAACTCGACCTGC 60.418 54.545 0.00 0.00 0.00 4.85
3059 3259 2.826725 ACCTTCTCCTTAACTCGACCTG 59.173 50.000 0.00 0.00 0.00 4.00
3060 3260 2.826725 CACCTTCTCCTTAACTCGACCT 59.173 50.000 0.00 0.00 0.00 3.85
3061 3261 2.674462 GCACCTTCTCCTTAACTCGACC 60.674 54.545 0.00 0.00 0.00 4.79
3062 3262 2.608268 GCACCTTCTCCTTAACTCGAC 58.392 52.381 0.00 0.00 0.00 4.20
3063 3263 1.201647 CGCACCTTCTCCTTAACTCGA 59.798 52.381 0.00 0.00 0.00 4.04
3064 3264 1.201647 TCGCACCTTCTCCTTAACTCG 59.798 52.381 0.00 0.00 0.00 4.18
3065 3265 3.190874 CATCGCACCTTCTCCTTAACTC 58.809 50.000 0.00 0.00 0.00 3.01
3066 3266 2.567615 ACATCGCACCTTCTCCTTAACT 59.432 45.455 0.00 0.00 0.00 2.24
3067 3267 2.673368 CACATCGCACCTTCTCCTTAAC 59.327 50.000 0.00 0.00 0.00 2.01
3068 3268 2.565391 TCACATCGCACCTTCTCCTTAA 59.435 45.455 0.00 0.00 0.00 1.85
3069 3269 2.176045 TCACATCGCACCTTCTCCTTA 58.824 47.619 0.00 0.00 0.00 2.69
3070 3270 0.976641 TCACATCGCACCTTCTCCTT 59.023 50.000 0.00 0.00 0.00 3.36
3071 3271 1.134580 CATCACATCGCACCTTCTCCT 60.135 52.381 0.00 0.00 0.00 3.69
3072 3272 1.134699 TCATCACATCGCACCTTCTCC 60.135 52.381 0.00 0.00 0.00 3.71
3073 3273 2.200067 CTCATCACATCGCACCTTCTC 58.800 52.381 0.00 0.00 0.00 2.87
3074 3274 1.552337 ACTCATCACATCGCACCTTCT 59.448 47.619 0.00 0.00 0.00 2.85
3075 3275 1.662629 CACTCATCACATCGCACCTTC 59.337 52.381 0.00 0.00 0.00 3.46
3076 3276 1.002430 ACACTCATCACATCGCACCTT 59.998 47.619 0.00 0.00 0.00 3.50
3077 3277 0.610174 ACACTCATCACATCGCACCT 59.390 50.000 0.00 0.00 0.00 4.00
3078 3278 2.293677 TACACTCATCACATCGCACC 57.706 50.000 0.00 0.00 0.00 5.01
3079 3279 4.394795 GTTTTACACTCATCACATCGCAC 58.605 43.478 0.00 0.00 0.00 5.34
3080 3280 3.435327 GGTTTTACACTCATCACATCGCA 59.565 43.478 0.00 0.00 0.00 5.10
3081 3281 3.684788 AGGTTTTACACTCATCACATCGC 59.315 43.478 0.00 0.00 0.00 4.58
3082 3282 5.171476 AGAGGTTTTACACTCATCACATCG 58.829 41.667 0.00 0.00 36.20 3.84
3083 3283 7.301054 CAAAGAGGTTTTACACTCATCACATC 58.699 38.462 0.00 0.00 36.20 3.06
3084 3284 6.207417 CCAAAGAGGTTTTACACTCATCACAT 59.793 38.462 0.00 0.00 36.20 3.21
3085 3285 5.530915 CCAAAGAGGTTTTACACTCATCACA 59.469 40.000 0.00 0.00 36.20 3.58
3086 3286 6.002062 CCAAAGAGGTTTTACACTCATCAC 57.998 41.667 0.00 0.00 36.20 3.06
3101 3301 2.032528 TCAGCGCCACCAAAGAGG 59.967 61.111 2.29 0.00 45.67 3.69
3102 3302 0.037326 TACTCAGCGCCACCAAAGAG 60.037 55.000 2.29 3.03 0.00 2.85
3103 3303 0.037326 CTACTCAGCGCCACCAAAGA 60.037 55.000 2.29 0.00 0.00 2.52
3104 3304 1.021390 CCTACTCAGCGCCACCAAAG 61.021 60.000 2.29 0.00 0.00 2.77
3105 3305 1.003839 CCTACTCAGCGCCACCAAA 60.004 57.895 2.29 0.00 0.00 3.28
3106 3306 2.662596 CCTACTCAGCGCCACCAA 59.337 61.111 2.29 0.00 0.00 3.67
3107 3307 4.082523 GCCTACTCAGCGCCACCA 62.083 66.667 2.29 0.00 0.00 4.17
3108 3308 4.840005 GGCCTACTCAGCGCCACC 62.840 72.222 2.29 0.00 37.79 4.61
3109 3309 3.724914 GAGGCCTACTCAGCGCCAC 62.725 68.421 4.42 0.00 45.85 5.01
3110 3310 3.461773 GAGGCCTACTCAGCGCCA 61.462 66.667 4.42 0.00 45.85 5.69
3111 3311 4.577246 CGAGGCCTACTCAGCGCC 62.577 72.222 4.42 0.00 46.98 6.53
3112 3312 4.577246 CCGAGGCCTACTCAGCGC 62.577 72.222 4.42 0.00 46.98 5.92
3113 3313 4.577246 GCCGAGGCCTACTCAGCG 62.577 72.222 4.42 3.17 46.98 5.18
3115 3315 1.439644 GAAGCCGAGGCCTACTCAG 59.560 63.158 4.42 0.00 46.98 3.35
3116 3316 2.415608 CGAAGCCGAGGCCTACTCA 61.416 63.158 4.42 0.00 46.98 3.41
3117 3317 2.339100 GACGAAGCCGAGGCCTACTC 62.339 65.000 4.42 0.00 43.17 2.59
3118 3318 2.362632 ACGAAGCCGAGGCCTACT 60.363 61.111 4.42 0.00 43.17 2.57
3119 3319 2.104530 GACGAAGCCGAGGCCTAC 59.895 66.667 4.42 0.00 43.17 3.18
3120 3320 2.044252 AGACGAAGCCGAGGCCTA 60.044 61.111 4.42 0.00 43.17 3.93
3121 3321 3.764466 CAGACGAAGCCGAGGCCT 61.764 66.667 3.86 3.86 43.17 5.19
3122 3322 3.760035 TCAGACGAAGCCGAGGCC 61.760 66.667 10.95 0.00 43.17 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.