Multiple sequence alignment - TraesCS1A01G162300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G162300 chr1A 100.000 8836 0 0 618 9453 291248373 291257208 0.000000e+00 16318.0
1 TraesCS1A01G162300 chr1A 100.000 364 0 0 1 364 291247756 291248119 0.000000e+00 673.0
2 TraesCS1A01G162300 chr1A 85.294 68 9 1 3590 3657 429632554 429632488 1.700000e-07 69.4
3 TraesCS1A01G162300 chr1B 92.452 4703 197 63 3733 8362 324351607 324356224 0.000000e+00 6573.0
4 TraesCS1A01G162300 chr1B 95.258 970 30 4 870 1830 324342212 324343174 0.000000e+00 1522.0
5 TraesCS1A01G162300 chr1B 93.890 982 43 6 2761 3733 324350581 324351554 0.000000e+00 1465.0
6 TraesCS1A01G162300 chr1B 93.677 775 37 7 1824 2598 324349589 324350351 0.000000e+00 1149.0
7 TraesCS1A01G162300 chr1B 90.305 361 35 0 4 364 324341716 324342076 3.090000e-129 473.0
8 TraesCS1A01G162300 chr1B 90.698 301 19 5 8357 8656 324358308 324358600 8.900000e-105 392.0
9 TraesCS1A01G162300 chr1B 87.500 208 13 4 2559 2760 324350350 324350550 2.660000e-55 228.0
10 TraesCS1A01G162300 chr1B 77.293 229 34 10 3016 3227 583442061 583441834 1.670000e-22 119.0
11 TraesCS1A01G162300 chr1B 83.186 113 9 6 3518 3622 142501965 142502075 2.810000e-15 95.3
12 TraesCS1A01G162300 chr1B 94.340 53 2 1 5013 5064 176998132 176998184 7.870000e-11 80.5
13 TraesCS1A01G162300 chr1B 90.476 63 3 3 5002 5062 354987476 354987537 7.870000e-11 80.5
14 TraesCS1A01G162300 chr1B 91.667 48 2 2 9081 9126 324358728 324358775 2.200000e-06 65.8
15 TraesCS1A01G162300 chr1D 92.692 2162 73 21 618 2760 224400474 224402569 0.000000e+00 3038.0
16 TraesCS1A01G162300 chr1D 95.585 1495 60 3 7184 8675 224406244 224407735 0.000000e+00 2390.0
17 TraesCS1A01G162300 chr1D 95.507 1224 42 7 5382 6597 224404559 224405777 0.000000e+00 1943.0
18 TraesCS1A01G162300 chr1D 92.693 999 41 13 2761 3733 224402601 224403593 0.000000e+00 1411.0
19 TraesCS1A01G162300 chr1D 93.798 774 24 4 8702 9453 224409305 224410076 0.000000e+00 1142.0
20 TraesCS1A01G162300 chr1D 97.867 422 8 1 6641 7061 224405767 224406188 0.000000e+00 728.0
21 TraesCS1A01G162300 chr1D 92.375 459 19 3 3733 4188 224403645 224404090 2.880000e-179 640.0
22 TraesCS1A01G162300 chr1D 90.110 364 36 0 1 364 224400029 224400392 3.090000e-129 473.0
23 TraesCS1A01G162300 chr1D 84.112 107 9 4 3563 3662 21892508 21892403 7.810000e-16 97.1
24 TraesCS1A01G162300 chr1D 90.323 62 4 2 5002 5062 258092016 258091956 7.870000e-11 80.5
25 TraesCS1A01G162300 chr7A 85.211 284 36 2 3380 3657 68187786 68187503 4.320000e-73 287.0
26 TraesCS1A01G162300 chr7A 84.615 143 22 0 9152 9294 493113467 493113325 9.900000e-30 143.0
27 TraesCS1A01G162300 chr7A 80.000 160 21 8 9147 9299 644008545 644008700 3.610000e-19 108.0
28 TraesCS1A01G162300 chr3B 85.512 283 32 7 3365 3642 527164462 527164184 4.320000e-73 287.0
29 TraesCS1A01G162300 chr3B 91.716 169 13 1 8064 8232 519860081 519860248 5.710000e-57 233.0
30 TraesCS1A01G162300 chr3B 82.550 149 25 1 9147 9295 217998257 217998404 7.700000e-26 130.0
31 TraesCS1A01G162300 chr3B 90.099 101 7 3 3501 3600 758495797 758495699 2.770000e-25 128.0
32 TraesCS1A01G162300 chr5D 84.483 290 33 2 3380 3657 325904554 325904265 9.350000e-70 276.0
33 TraesCS1A01G162300 chr5D 92.638 163 12 0 8063 8225 461072598 461072760 1.590000e-57 235.0
34 TraesCS1A01G162300 chr5D 77.135 363 58 16 4195 4539 236421477 236421832 4.510000e-43 187.0
35 TraesCS1A01G162300 chr5D 79.147 211 36 7 3065 3272 125800881 125801086 1.280000e-28 139.0
36 TraesCS1A01G162300 chr5D 81.879 149 25 2 9147 9294 9944023 9943876 3.580000e-24 124.0
37 TraesCS1A01G162300 chr5D 86.735 98 6 5 4973 5063 288813888 288813985 1.680000e-17 102.0
38 TraesCS1A01G162300 chr5D 97.561 41 1 0 8866 8906 334897404 334897444 4.740000e-08 71.3
39 TraesCS1A01G162300 chr5D 78.351 97 15 4 4972 5065 387703609 387703516 3.690000e-04 58.4
40 TraesCS1A01G162300 chr4D 77.237 514 87 25 2761 3260 55376537 55376040 3.360000e-69 274.0
41 TraesCS1A01G162300 chr4D 75.422 533 96 27 2761 3272 55377888 55377370 9.550000e-55 226.0
42 TraesCS1A01G162300 chr4D 81.935 155 24 3 9142 9294 8782451 8782299 2.770000e-25 128.0
43 TraesCS1A01G162300 chr4D 90.000 60 3 3 5002 5060 277378194 277378251 3.660000e-09 75.0
44 TraesCS1A01G162300 chr4B 82.818 291 44 3 3372 3656 43766403 43766693 1.220000e-63 255.0
45 TraesCS1A01G162300 chr4B 92.121 165 13 0 8061 8225 28724137 28724301 5.710000e-57 233.0
46 TraesCS1A01G162300 chr4A 83.103 290 38 7 3377 3656 572536646 572536358 4.380000e-63 254.0
47 TraesCS1A01G162300 chr4A 77.869 244 46 6 2994 3231 541431175 541431416 2.750000e-30 145.0
48 TraesCS1A01G162300 chr4A 81.208 149 24 3 9147 9294 594531994 594532139 6.000000e-22 117.0
49 TraesCS1A01G162300 chr4A 81.333 150 21 4 9147 9294 594531619 594531763 2.160000e-21 115.0
50 TraesCS1A01G162300 chr4A 81.915 94 13 3 4969 5060 362069922 362070013 1.020000e-09 76.8
51 TraesCS1A01G162300 chr7D 92.899 169 11 1 8060 8228 566026742 566026575 2.640000e-60 244.0
52 TraesCS1A01G162300 chr7D 90.840 131 11 1 3461 3590 64381920 64381790 3.510000e-39 174.0
53 TraesCS1A01G162300 chr7D 90.769 65 3 3 5001 5064 105246659 105246721 6.080000e-12 84.2
54 TraesCS1A01G162300 chr7D 91.489 47 4 0 3388 3434 148018285 148018239 2.200000e-06 65.8
55 TraesCS1A01G162300 chr5A 90.503 179 15 2 8061 8238 653299607 653299430 1.590000e-57 235.0
56 TraesCS1A01G162300 chr5A 74.453 548 106 21 4019 4542 318844178 318843641 1.240000e-48 206.0
57 TraesCS1A01G162300 chr5A 81.295 139 23 2 9168 9304 672755403 672755540 1.000000e-19 110.0
58 TraesCS1A01G162300 chr5A 82.653 98 8 7 4972 5065 490590126 490590034 2.830000e-10 78.7
59 TraesCS1A01G162300 chr6D 92.121 165 13 0 8067 8231 351233596 351233432 5.710000e-57 233.0
60 TraesCS1A01G162300 chr6D 97.297 37 1 0 8947 8983 327010766 327010802 7.930000e-06 63.9
61 TraesCS1A01G162300 chr6A 89.674 184 16 3 8048 8229 442395535 442395717 2.050000e-56 231.0
62 TraesCS1A01G162300 chr6A 97.297 37 1 0 8947 8983 465611936 465611972 7.930000e-06 63.9
63 TraesCS1A01G162300 chr5B 74.863 549 101 24 4019 4542 268524560 268524024 2.070000e-51 215.0
64 TraesCS1A01G162300 chr2A 81.871 171 27 2 3066 3232 105539648 105539478 3.560000e-29 141.0
65 TraesCS1A01G162300 chr2A 82.390 159 25 3 3075 3232 105527416 105527260 1.660000e-27 135.0
66 TraesCS1A01G162300 chr7B 78.205 156 26 6 15 163 468427226 468427072 1.010000e-14 93.5
67 TraesCS1A01G162300 chr2B 83.099 71 9 2 3183 3253 621972202 621972269 2.850000e-05 62.1
68 TraesCS1A01G162300 chr2D 96.875 32 1 0 3222 3253 525500150 525500119 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G162300 chr1A 291247756 291257208 9452 False 8495.500000 16318 100.000000 1 9453 2 chr1A.!!$F1 9452
1 TraesCS1A01G162300 chr1B 324349589 324358775 9186 False 1645.466667 6573 91.647333 1824 9126 6 chr1B.!!$F5 7302
2 TraesCS1A01G162300 chr1B 324341716 324343174 1458 False 997.500000 1522 92.781500 4 1830 2 chr1B.!!$F4 1826
3 TraesCS1A01G162300 chr1D 224400029 224410076 10047 False 1470.625000 3038 93.828375 1 9453 8 chr1D.!!$F1 9452
4 TraesCS1A01G162300 chr4D 55376040 55377888 1848 True 250.000000 274 76.329500 2761 3272 2 chr4D.!!$R2 511
5 TraesCS1A01G162300 chr5A 318843641 318844178 537 True 206.000000 206 74.453000 4019 4542 1 chr5A.!!$R1 523
6 TraesCS1A01G162300 chr5B 268524024 268524560 536 True 215.000000 215 74.863000 4019 4542 1 chr5B.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.032815 GCCAGCCGAGAAGATCTACC 59.967 60.000 0.00 0.00 0.00 3.18 F
305 306 0.104304 AAATCGCCGTCGCCTTCTAT 59.896 50.000 0.00 0.00 35.26 1.98 F
664 673 0.170116 TTTTCGGGAATGCGCACATC 59.830 50.000 14.90 14.89 34.62 3.06 F
1991 2012 0.673985 TCGAGGCATATAGCTTGCGT 59.326 50.000 3.84 3.84 44.79 5.24 F
2692 2753 0.533308 TGTTAGTCGTGTTGTGGGGC 60.533 55.000 0.00 0.00 0.00 5.80 F
3298 4750 0.472734 AGAGGTGGTGGAGTTCTGCT 60.473 55.000 0.00 0.00 0.00 4.24 F
4009 5542 0.592148 GGACCTATACCGAGACGCTG 59.408 60.000 0.00 0.00 0.00 5.18 F
4987 6557 0.924090 TGACTACTCCCTCCGATCCA 59.076 55.000 0.00 0.00 0.00 3.41 F
6434 8040 1.069823 CCGAGCTCTATTCCTGCATGT 59.930 52.381 12.85 0.00 0.00 3.21 F
7132 8823 0.251165 AAGGTGATTTGGGACCGTGG 60.251 55.000 0.00 0.00 37.32 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1415 0.179121 CACCGCACGCTTATACCTCA 60.179 55.000 0.00 0.0 0.00 3.86 R
1784 1803 3.867600 GCAGATGCCGATACCTCATGATT 60.868 47.826 0.00 0.0 34.31 2.57 R
2414 2435 2.145397 TTGCAACTGGGTTTACCACA 57.855 45.000 0.00 0.0 46.80 4.17 R
3031 4478 0.460284 CTCCGTGAAGATCAACCCCG 60.460 60.000 0.00 0.0 0.00 5.73 R
4011 5544 0.449388 CACCTCTCATTTGCTTCGGC 59.551 55.000 0.00 0.0 42.19 5.54 R
5202 6772 1.621317 TGCTCCAGAATCCGTGTTGTA 59.379 47.619 0.00 0.0 0.00 2.41 R
5679 7284 1.819208 AACTGCTTGCACACTCGCA 60.819 52.632 0.00 0.0 41.03 5.10 R
6617 8284 0.856982 TGGGGGAAGCTCCTCAAAAA 59.143 50.000 4.72 0.0 39.37 1.94 R
7500 9191 0.657312 TGCACTGCTCAAGTTTGACG 59.343 50.000 1.98 0.0 36.83 4.35 R
8675 12473 0.393673 GGGGGAGAGAGCAAAAGAGC 60.394 60.000 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.698382 CGAACTGAGATGCTCGCC 58.302 61.111 0.00 0.00 32.35 5.54
75 76 0.032815 GCCAGCCGAGAAGATCTACC 59.967 60.000 0.00 0.00 0.00 3.18
82 83 2.095466 CCGAGAAGATCTACCGCATCTC 60.095 54.545 9.05 9.05 29.82 2.75
83 84 2.811431 CGAGAAGATCTACCGCATCTCT 59.189 50.000 14.79 4.14 32.98 3.10
84 85 3.997681 CGAGAAGATCTACCGCATCTCTA 59.002 47.826 14.79 0.00 32.98 2.43
93 94 4.820716 TCTACCGCATCTCTAAGTAGTTCC 59.179 45.833 0.00 0.00 33.66 3.62
95 96 2.358267 CCGCATCTCTAAGTAGTTCCGT 59.642 50.000 0.00 0.00 0.00 4.69
102 103 7.705325 GCATCTCTAAGTAGTTCCGTATGAAAA 59.295 37.037 0.00 0.00 33.94 2.29
126 127 4.041567 TGTTGAGGAACTTAGCATCCTTGA 59.958 41.667 8.32 0.00 46.04 3.02
203 204 4.632538 ACTAAACAAGTTCAACCAGTGC 57.367 40.909 0.00 0.00 33.35 4.40
231 232 6.127054 TGTGAGCTAATCATAGTGTAGCCTTT 60.127 38.462 0.00 0.00 40.96 3.11
240 241 5.655090 TCATAGTGTAGCCTTTGTAGTGCTA 59.345 40.000 0.00 0.00 36.57 3.49
253 254 3.195610 TGTAGTGCTATGTCTCCAACAGG 59.804 47.826 0.00 0.00 42.37 4.00
266 267 1.747355 CCAACAGGATCATGAAGGTGC 59.253 52.381 15.42 0.00 0.00 5.01
268 269 0.994247 ACAGGATCATGAAGGTGCCA 59.006 50.000 15.42 0.00 0.00 4.92
279 280 0.990374 AAGGTGCCAGAGAAGAGCAT 59.010 50.000 0.00 0.00 39.04 3.79
292 293 3.373439 AGAAGAGCATGAAGACAAATCGC 59.627 43.478 0.00 0.00 0.00 4.58
305 306 0.104304 AAATCGCCGTCGCCTTCTAT 59.896 50.000 0.00 0.00 35.26 1.98
355 356 1.541379 TCTCGTCGGTGAAGAATCCA 58.459 50.000 0.00 0.00 0.00 3.41
360 361 3.682858 TCGTCGGTGAAGAATCCAAATTC 59.317 43.478 0.00 0.00 41.43 2.17
641 642 0.681243 GTGACCCAATTCCTCCTGCC 60.681 60.000 0.00 0.00 0.00 4.85
664 673 0.170116 TTTTCGGGAATGCGCACATC 59.830 50.000 14.90 14.89 34.62 3.06
682 691 2.634982 TCGCTTGATGCATTGTTTCC 57.365 45.000 0.00 0.00 43.06 3.13
684 693 1.203052 CGCTTGATGCATTGTTTCCCT 59.797 47.619 0.00 0.00 43.06 4.20
686 695 2.417787 GCTTGATGCATTGTTTCCCTCC 60.418 50.000 0.00 0.00 42.31 4.30
688 697 2.726821 TGATGCATTGTTTCCCTCCTC 58.273 47.619 0.00 0.00 0.00 3.71
689 698 2.309755 TGATGCATTGTTTCCCTCCTCT 59.690 45.455 0.00 0.00 0.00 3.69
690 699 2.205022 TGCATTGTTTCCCTCCTCTG 57.795 50.000 0.00 0.00 0.00 3.35
691 700 0.813821 GCATTGTTTCCCTCCTCTGC 59.186 55.000 0.00 0.00 0.00 4.26
692 701 1.887956 GCATTGTTTCCCTCCTCTGCA 60.888 52.381 0.00 0.00 0.00 4.41
693 702 2.731572 CATTGTTTCCCTCCTCTGCAT 58.268 47.619 0.00 0.00 0.00 3.96
694 703 2.205022 TTGTTTCCCTCCTCTGCATG 57.795 50.000 0.00 0.00 0.00 4.06
865 877 2.677003 GCATTCGGTGGACGTGGTG 61.677 63.158 0.00 0.00 44.69 4.17
911 923 2.720358 AAACGCCCCACAGACGTACC 62.720 60.000 0.00 0.00 39.49 3.34
912 924 3.379445 CGCCCCACAGACGTACCT 61.379 66.667 0.00 0.00 0.00 3.08
952 964 1.143073 AGCTATTCCCAATTCCCCGTC 59.857 52.381 0.00 0.00 0.00 4.79
1071 1083 2.123077 CATCTCCTCCCTCGGCCT 60.123 66.667 0.00 0.00 0.00 5.19
1396 1415 8.014070 TGATATTTTGCTGGATTGAATGATGT 57.986 30.769 0.00 0.00 0.00 3.06
1671 1690 2.293122 CCGAAGACAATGCTTTTCCACA 59.707 45.455 0.00 0.00 0.00 4.17
1684 1703 5.833131 TGCTTTTCCACAGATTTCTTAACCT 59.167 36.000 0.00 0.00 0.00 3.50
1797 1818 4.712476 ACTTCTGCCAATCATGAGGTATC 58.288 43.478 0.09 0.00 0.00 2.24
1991 2012 0.673985 TCGAGGCATATAGCTTGCGT 59.326 50.000 3.84 3.84 44.79 5.24
1996 2017 1.334869 GGCATATAGCTTGCGTGCTTT 59.665 47.619 8.53 4.08 43.74 3.51
2049 2070 8.739039 AGTTTGAATCGAATACCATTTGATGAA 58.261 29.630 0.00 0.00 0.00 2.57
2191 2212 6.075205 GCAGGTATAACGTACTTATGTTGACG 60.075 42.308 4.41 3.32 41.02 4.35
2236 2257 7.703058 TGTACTCATGTCAGAATACTCTTCA 57.297 36.000 0.00 0.00 0.00 3.02
2246 2267 6.931840 GTCAGAATACTCTTCACTTTTCCTGT 59.068 38.462 0.00 0.00 0.00 4.00
2253 2274 4.130118 TCTTCACTTTTCCTGTCTTGAGC 58.870 43.478 0.00 0.00 0.00 4.26
2321 2342 7.979444 TTTTCTATTGAAGTACTGGAGGTTG 57.021 36.000 0.00 0.00 33.28 3.77
2414 2435 4.817318 ATTTGTATGCATTTTCGGGGTT 57.183 36.364 3.54 0.00 0.00 4.11
2415 2436 3.584406 TTGTATGCATTTTCGGGGTTG 57.416 42.857 3.54 0.00 0.00 3.77
2431 2452 1.067974 GGTTGTGGTAAACCCAGTTGC 59.932 52.381 0.00 0.00 46.45 4.17
2591 2644 9.807386 TTTGTACAACAAACCAAAATTAAAACG 57.193 25.926 8.07 0.00 42.55 3.60
2595 2648 8.252964 ACAACAAACCAAAATTAAAACGCTAA 57.747 26.923 0.00 0.00 0.00 3.09
2671 2732 2.830923 CAACCACCCTATGCCAAATTCA 59.169 45.455 0.00 0.00 0.00 2.57
2688 2749 5.403897 AATTCAGTGTTAGTCGTGTTGTG 57.596 39.130 0.00 0.00 0.00 3.33
2692 2753 0.533308 TGTTAGTCGTGTTGTGGGGC 60.533 55.000 0.00 0.00 0.00 5.80
2705 2766 1.926489 TGGGGCCGAGGTTATGGTT 60.926 57.895 0.00 0.00 0.00 3.67
2715 2776 3.453353 CGAGGTTATGGTTTAGAAGGGGA 59.547 47.826 0.00 0.00 0.00 4.81
2717 2778 5.306160 CGAGGTTATGGTTTAGAAGGGGATA 59.694 44.000 0.00 0.00 0.00 2.59
2729 2790 9.775854 GTTTAGAAGGGGATAAATAGACCTTAC 57.224 37.037 0.00 0.00 41.35 2.34
2906 4352 2.354805 GCAATCCTACTCCTCGTTGGTT 60.355 50.000 0.00 0.00 39.24 3.67
2925 4371 7.148557 CGTTGGTTAAGGTTCAAACACAAATTT 60.149 33.333 0.00 0.00 0.00 1.82
2926 4372 7.602517 TGGTTAAGGTTCAAACACAAATTTG 57.397 32.000 16.67 16.67 40.32 2.32
3031 4478 1.271217 ACGAAGGTCAAAGCCTAACCC 60.271 52.381 0.00 0.00 38.03 4.11
3127 4575 4.966965 TCAAGTGACTCCTAATCGTCTC 57.033 45.455 0.00 0.00 0.00 3.36
3261 4713 6.892485 TCAAATGATGGAGCAAAGAGAGATA 58.108 36.000 0.00 0.00 0.00 1.98
3264 4716 6.744175 ATGATGGAGCAAAGAGAGATAGAA 57.256 37.500 0.00 0.00 0.00 2.10
3272 4724 6.337356 AGCAAAGAGAGATAGAACACTAAGC 58.663 40.000 0.00 0.00 0.00 3.09
3298 4750 0.472734 AGAGGTGGTGGAGTTCTGCT 60.473 55.000 0.00 0.00 0.00 4.24
3318 4770 5.358922 TGCTTTCAAACCCTCTGAAAAATG 58.641 37.500 0.26 0.00 41.10 2.32
3365 4837 3.072038 GTGGTGTGGGGGTCTATATTACC 59.928 52.174 0.00 0.00 36.19 2.85
3405 4877 3.778265 ACCACAAGGCCACTATCAAAAT 58.222 40.909 5.01 0.00 39.06 1.82
3440 4912 9.712305 GCATGTATACAATACCACTATCTCTTT 57.288 33.333 10.14 0.00 0.00 2.52
3495 4967 5.973899 TGATGGTGCTTACTAATGCAAAA 57.026 34.783 0.00 0.00 41.10 2.44
3622 5099 8.359642 TGTTTTCTTGGTATCTGAAAAATGAGG 58.640 33.333 8.35 0.00 40.07 3.86
3644 5121 7.617723 TGAGGTAATGGCCTTGTATACAAAAAT 59.382 33.333 18.55 7.70 39.34 1.82
3746 5276 1.376466 CAGTAGGTGGCTGGCACTT 59.624 57.895 29.69 25.82 0.00 3.16
3864 5396 2.751259 TCTGCATGAAGGATCAACTTGC 59.249 45.455 0.00 13.02 39.49 4.01
3898 5430 5.420409 GGAAGTGATAATTCTCGGAAGTGT 58.580 41.667 0.00 0.00 0.00 3.55
3929 5462 1.918957 AGAGGAACCCTGGAATGGAAG 59.081 52.381 0.00 0.00 31.76 3.46
3999 5532 4.313282 GCTTGGAAATACCGGACCTATAC 58.687 47.826 9.46 0.00 42.61 1.47
4000 5533 4.801914 GCTTGGAAATACCGGACCTATACC 60.802 50.000 9.46 4.28 42.61 2.73
4008 5541 3.018479 GGACCTATACCGAGACGCT 57.982 57.895 0.00 0.00 0.00 5.07
4009 5542 0.592148 GGACCTATACCGAGACGCTG 59.408 60.000 0.00 0.00 0.00 5.18
4010 5543 1.307097 GACCTATACCGAGACGCTGT 58.693 55.000 0.00 0.00 0.00 4.40
4011 5544 1.002684 GACCTATACCGAGACGCTGTG 60.003 57.143 0.00 0.00 0.00 3.66
4059 5606 4.617253 TTGCTAGACAAGGTTAAGCTCA 57.383 40.909 7.80 0.00 33.24 4.26
4096 5643 5.923733 AACAGAGATACACTTGGTAGGAG 57.076 43.478 0.00 0.00 34.92 3.69
4110 5657 2.351455 GTAGGAGAAAAGCTCAGTGGC 58.649 52.381 0.00 0.00 45.81 5.01
4113 5660 1.597742 GAGAAAAGCTCAGTGGCACA 58.402 50.000 21.41 0.00 43.38 4.57
4338 5886 5.981088 TTTGCTTGCATTCCTCTTGATAA 57.019 34.783 0.00 0.00 0.00 1.75
4479 6032 5.355596 TGTTTTCACATCAAAATGGACCAC 58.644 37.500 0.00 0.00 37.19 4.16
4597 6160 7.120716 TGTACCCATCTCACTACAACATACTA 58.879 38.462 0.00 0.00 0.00 1.82
4637 6200 6.805271 GCAATATGTCAGATATTGTGCAATCC 59.195 38.462 14.37 0.00 41.56 3.01
4660 6223 5.183140 CCATCAAAGGGTACAAACTGGTTAG 59.817 44.000 0.00 0.00 0.00 2.34
4675 6238 6.588719 ACTGGTTAGATGCTGCAAATTAAA 57.411 33.333 6.36 0.00 0.00 1.52
4742 6305 5.195001 TGTAACACCTTTGAGGCAAAATC 57.805 39.130 0.00 0.00 39.63 2.17
4756 6322 6.269769 TGAGGCAAAATCTTCTATGGGTTTTT 59.730 34.615 0.00 0.00 0.00 1.94
4937 6507 6.762333 ACTTGGCTCTTTTGAAAATTATGCT 58.238 32.000 0.00 0.00 0.00 3.79
4985 6555 4.674281 ATTTTGACTACTCCCTCCGATC 57.326 45.455 0.00 0.00 0.00 3.69
4986 6556 2.068834 TTGACTACTCCCTCCGATCC 57.931 55.000 0.00 0.00 0.00 3.36
4987 6557 0.924090 TGACTACTCCCTCCGATCCA 59.076 55.000 0.00 0.00 0.00 3.41
4988 6558 1.499438 TGACTACTCCCTCCGATCCAT 59.501 52.381 0.00 0.00 0.00 3.41
4990 6560 3.333980 TGACTACTCCCTCCGATCCATAT 59.666 47.826 0.00 0.00 0.00 1.78
4991 6561 4.202684 TGACTACTCCCTCCGATCCATATT 60.203 45.833 0.00 0.00 0.00 1.28
5016 6586 9.959749 TTTTTATGCTCCTTTAGTACAAAGTTG 57.040 29.630 13.29 8.63 0.00 3.16
5017 6587 8.685838 TTTATGCTCCTTTAGTACAAAGTTGT 57.314 30.769 13.29 1.75 44.86 3.32
5018 6588 9.781633 TTTATGCTCCTTTAGTACAAAGTTGTA 57.218 29.630 13.29 0.00 42.35 2.41
5030 6600 4.700700 ACAAAGTTGTACTAAAGGAGCGT 58.299 39.130 0.00 0.00 40.16 5.07
5031 6601 4.748600 ACAAAGTTGTACTAAAGGAGCGTC 59.251 41.667 0.00 0.00 40.16 5.19
5032 6602 4.595762 AAGTTGTACTAAAGGAGCGTCA 57.404 40.909 0.00 0.00 0.00 4.35
5033 6603 4.595762 AGTTGTACTAAAGGAGCGTCAA 57.404 40.909 0.00 0.00 0.00 3.18
5034 6604 5.148651 AGTTGTACTAAAGGAGCGTCAAT 57.851 39.130 0.00 0.00 0.00 2.57
5035 6605 5.548406 AGTTGTACTAAAGGAGCGTCAATT 58.452 37.500 0.00 0.00 0.00 2.32
5036 6606 6.694447 AGTTGTACTAAAGGAGCGTCAATTA 58.306 36.000 0.00 0.00 0.00 1.40
5046 6616 6.114187 AGGAGCGTCAATTAATATGGATCA 57.886 37.500 0.00 0.00 0.00 2.92
5056 6626 9.392506 TCAATTAATATGGATCAGAGGGAGTAA 57.607 33.333 0.00 0.00 0.00 2.24
5202 6772 6.924111 AGCGATGGTCAAATTGTAAAAAGAT 58.076 32.000 0.00 0.00 0.00 2.40
5212 6782 8.622157 TCAAATTGTAAAAAGATACAACACGGA 58.378 29.630 2.31 0.00 45.63 4.69
5292 6862 2.711009 CTCAGGATGGGCCCTAATGTTA 59.289 50.000 25.70 0.00 37.37 2.41
5301 6871 5.200483 TGGGCCCTAATGTTAAATGAAGAG 58.800 41.667 25.70 0.00 0.00 2.85
5306 6876 7.255277 GGCCCTAATGTTAAATGAAGAGATCAC 60.255 40.741 0.00 0.00 41.93 3.06
5381 6951 6.227298 AGATTAAGCCTTTCGAAGATCTCA 57.773 37.500 0.00 0.00 35.04 3.27
5385 6955 4.213564 AGCCTTTCGAAGATCTCATTGT 57.786 40.909 0.00 0.00 35.04 2.71
5391 6961 7.675170 GCCTTTCGAAGATCTCATTGTAGTTTC 60.675 40.741 0.00 0.00 35.04 2.78
5472 7048 9.383519 TGTGACATCTTCTTTATAGAAACATCC 57.616 33.333 0.00 0.00 39.80 3.51
5637 7242 4.253685 CTGATGTTACAACCCCAGTAGTG 58.746 47.826 0.00 0.00 0.00 2.74
5679 7284 6.351286 GGAATGGAGAATTATTTGCTGGTGTT 60.351 38.462 0.00 0.00 0.00 3.32
5820 7425 4.458295 GCAGGAAACTTTTCTTACCCCTAC 59.542 45.833 1.88 0.00 40.21 3.18
5853 7458 1.399744 TTCTACCGCCGCATCTCCAT 61.400 55.000 0.00 0.00 0.00 3.41
5927 7532 5.219633 CCGCTTGCAAAAGTAAGTTGTTAT 58.780 37.500 0.00 0.00 0.00 1.89
6256 7862 5.556915 TCTCCATTTCAAATTACAGGTCGT 58.443 37.500 0.00 0.00 0.00 4.34
6385 7991 7.048629 TCCAATGAGCTTAAGTATCTCTCTG 57.951 40.000 4.02 4.53 0.00 3.35
6434 8040 1.069823 CCGAGCTCTATTCCTGCATGT 59.930 52.381 12.85 0.00 0.00 3.21
6516 8122 4.717233 TCTGTGTGCTCAAACAAAATGT 57.283 36.364 0.00 0.00 0.00 2.71
6518 8124 4.157472 TCTGTGTGCTCAAACAAAATGTGA 59.843 37.500 0.00 0.00 0.00 3.58
6590 8257 8.776470 GTTGTTGCACTACATTACCTTTTAGTA 58.224 33.333 0.00 0.00 0.00 1.82
6604 8271 9.933723 TTACCTTTTAGTATACTTGTGAACTCC 57.066 33.333 11.40 0.00 0.00 3.85
6605 8272 8.203681 ACCTTTTAGTATACTTGTGAACTCCT 57.796 34.615 11.40 0.00 0.00 3.69
6606 8273 9.317827 ACCTTTTAGTATACTTGTGAACTCCTA 57.682 33.333 11.40 0.00 0.00 2.94
6612 8279 8.694581 AGTATACTTGTGAACTCCTATCTACC 57.305 38.462 0.00 0.00 0.00 3.18
6613 8280 8.280084 AGTATACTTGTGAACTCCTATCTACCA 58.720 37.037 0.00 0.00 0.00 3.25
6614 8281 9.080097 GTATACTTGTGAACTCCTATCTACCAT 57.920 37.037 0.00 0.00 0.00 3.55
6616 8283 9.830186 ATACTTGTGAACTCCTATCTACCATAT 57.170 33.333 0.00 0.00 0.00 1.78
6617 8284 8.554490 ACTTGTGAACTCCTATCTACCATATT 57.446 34.615 0.00 0.00 0.00 1.28
6618 8285 8.993424 ACTTGTGAACTCCTATCTACCATATTT 58.007 33.333 0.00 0.00 0.00 1.40
6619 8286 9.838339 CTTGTGAACTCCTATCTACCATATTTT 57.162 33.333 0.00 0.00 0.00 1.82
6635 8302 3.765968 TTTTTGAGGAGCTTCCCCC 57.234 52.632 0.00 0.00 37.19 5.40
6636 8303 0.856982 TTTTTGAGGAGCTTCCCCCA 59.143 50.000 0.00 0.00 37.19 4.96
6637 8304 0.856982 TTTTGAGGAGCTTCCCCCAA 59.143 50.000 0.00 0.00 37.19 4.12
6638 8305 0.856982 TTTGAGGAGCTTCCCCCAAA 59.143 50.000 0.00 0.00 37.19 3.28
6639 8306 0.856982 TTGAGGAGCTTCCCCCAAAA 59.143 50.000 0.00 0.00 37.19 2.44
6640 8307 0.856982 TGAGGAGCTTCCCCCAAAAA 59.143 50.000 0.00 0.00 37.19 1.94
6641 8308 1.203050 TGAGGAGCTTCCCCCAAAAAG 60.203 52.381 0.00 0.00 37.19 2.27
6642 8309 0.860457 AGGAGCTTCCCCCAAAAAGT 59.140 50.000 0.00 0.00 37.19 2.66
6643 8310 1.220493 AGGAGCTTCCCCCAAAAAGTT 59.780 47.619 0.00 0.00 37.19 2.66
6644 8311 1.618837 GGAGCTTCCCCCAAAAAGTTC 59.381 52.381 0.00 0.00 33.48 3.01
6684 8351 9.627395 CAATTATTACCGGTGTTATGTTTTTCA 57.373 29.630 19.93 0.00 0.00 2.69
7028 8695 6.263392 TGTGTGTATAGATGAGTCTTAGAGGC 59.737 42.308 0.00 0.00 35.87 4.70
7043 8710 2.525368 AGAGGCAAACCACAAATACCC 58.475 47.619 0.00 0.00 39.06 3.69
7098 8789 0.392461 GGGGCACATGTAGAAAGCGA 60.392 55.000 0.00 0.00 0.00 4.93
7101 8792 1.804151 GGCACATGTAGAAAGCGAACA 59.196 47.619 0.00 0.00 0.00 3.18
7102 8793 2.225491 GGCACATGTAGAAAGCGAACAA 59.775 45.455 0.00 0.00 0.00 2.83
7103 8794 3.304391 GGCACATGTAGAAAGCGAACAAA 60.304 43.478 0.00 0.00 0.00 2.83
7104 8795 3.908382 GCACATGTAGAAAGCGAACAAAG 59.092 43.478 0.00 0.00 0.00 2.77
7105 8796 4.466828 CACATGTAGAAAGCGAACAAAGG 58.533 43.478 0.00 0.00 0.00 3.11
7106 8797 4.024048 CACATGTAGAAAGCGAACAAAGGT 60.024 41.667 0.00 0.00 0.00 3.50
7107 8798 4.024048 ACATGTAGAAAGCGAACAAAGGTG 60.024 41.667 0.00 0.00 0.00 4.00
7108 8799 2.875933 TGTAGAAAGCGAACAAAGGTGG 59.124 45.455 0.00 0.00 0.00 4.61
7109 8800 2.341846 AGAAAGCGAACAAAGGTGGA 57.658 45.000 0.00 0.00 0.00 4.02
7110 8801 2.222027 AGAAAGCGAACAAAGGTGGAG 58.778 47.619 0.00 0.00 0.00 3.86
7111 8802 2.158813 AGAAAGCGAACAAAGGTGGAGA 60.159 45.455 0.00 0.00 0.00 3.71
7132 8823 0.251165 AAGGTGATTTGGGACCGTGG 60.251 55.000 0.00 0.00 37.32 4.94
7136 8827 0.536233 TGATTTGGGACCGTGGTGTG 60.536 55.000 0.00 0.00 0.00 3.82
7163 8854 7.676004 TGATATCTAGATGGCAAAATTCGGTA 58.324 34.615 15.79 0.00 0.00 4.02
7168 8859 4.997565 AGATGGCAAAATTCGGTAATGTG 58.002 39.130 0.00 0.00 0.00 3.21
7338 9029 7.859377 GGTTTTGTAGTTGAAGTAGTTTTAGGC 59.141 37.037 0.00 0.00 0.00 3.93
7500 9191 6.107343 GTCTACTCCAGGGAAATACAACTTC 58.893 44.000 0.00 0.00 0.00 3.01
7520 9211 1.333524 CGTCAAACTTGAGCAGTGCAG 60.334 52.381 19.20 8.72 37.98 4.41
7673 9364 3.372206 CACGTCAACTTCATGAAGGATCC 59.628 47.826 33.11 19.36 42.53 3.36
7860 9551 2.840651 TGATTGTTTGGTTGGTGGGTTT 59.159 40.909 0.00 0.00 0.00 3.27
7988 9679 2.747460 TGCAAGCATCGCAGGTCC 60.747 61.111 0.00 0.00 33.55 4.46
7989 9680 2.437359 GCAAGCATCGCAGGTCCT 60.437 61.111 0.00 0.00 0.00 3.85
8009 9700 6.825721 GGTCCTTCACATGAATCTTTATCAGT 59.174 38.462 0.00 0.00 33.01 3.41
8029 9720 5.656416 TCAGTTTCTCTGTTTTGTGGGATTT 59.344 36.000 0.00 0.00 43.97 2.17
8076 9767 2.036862 GCATAAGTAACTACCCCCTCCG 59.963 54.545 0.00 0.00 0.00 4.63
8077 9768 3.303049 CATAAGTAACTACCCCCTCCGT 58.697 50.000 0.00 0.00 0.00 4.69
8078 9769 2.332332 AAGTAACTACCCCCTCCGTT 57.668 50.000 0.00 0.00 0.00 4.44
8079 9770 1.857965 AGTAACTACCCCCTCCGTTC 58.142 55.000 0.00 0.00 0.00 3.95
8080 9771 1.360507 AGTAACTACCCCCTCCGTTCT 59.639 52.381 0.00 0.00 0.00 3.01
8081 9772 2.182827 GTAACTACCCCCTCCGTTCTT 58.817 52.381 0.00 0.00 0.00 2.52
8082 9773 2.629017 AACTACCCCCTCCGTTCTTA 57.371 50.000 0.00 0.00 0.00 2.10
8083 9774 2.629017 ACTACCCCCTCCGTTCTTAA 57.371 50.000 0.00 0.00 0.00 1.85
8084 9775 2.906568 ACTACCCCCTCCGTTCTTAAA 58.093 47.619 0.00 0.00 0.00 1.52
8085 9776 3.457836 ACTACCCCCTCCGTTCTTAAAT 58.542 45.455 0.00 0.00 0.00 1.40
8086 9777 4.623863 ACTACCCCCTCCGTTCTTAAATA 58.376 43.478 0.00 0.00 0.00 1.40
8087 9778 5.222086 ACTACCCCCTCCGTTCTTAAATAT 58.778 41.667 0.00 0.00 0.00 1.28
8088 9779 6.384603 ACTACCCCCTCCGTTCTTAAATATA 58.615 40.000 0.00 0.00 0.00 0.86
8089 9780 6.845975 ACTACCCCCTCCGTTCTTAAATATAA 59.154 38.462 0.00 0.00 0.00 0.98
8132 9837 4.243270 ACAGACTACATACGGAGCAAAAC 58.757 43.478 0.00 0.00 0.00 2.43
8225 9930 6.272558 AGGCTTATATTTAGAAACGGAGGGAT 59.727 38.462 0.00 0.00 0.00 3.85
8229 9934 9.152595 CTTATATTTAGAAACGGAGGGATTAGC 57.847 37.037 0.00 0.00 0.00 3.09
8279 9985 8.132362 TGTAATGTCAAAAGTGTAAACATCCAC 58.868 33.333 0.00 0.00 30.56 4.02
8519 12317 7.102346 AGTTAGGAGAGAGAATTTGTCATGTG 58.898 38.462 0.00 0.00 0.00 3.21
8539 12337 8.469200 TCATGTGACAGTTCATTTTTCTTCTTT 58.531 29.630 0.00 0.00 33.11 2.52
8670 12468 7.538678 CCTGAAAATTATTTCCAGTTTCTGTCG 59.461 37.037 3.40 0.00 43.54 4.35
8675 12473 4.568152 ATTTCCAGTTTCTGTCGGTTTG 57.432 40.909 0.00 0.00 0.00 2.93
8676 12474 1.305201 TCCAGTTTCTGTCGGTTTGC 58.695 50.000 0.00 0.00 0.00 3.68
8677 12475 1.134220 TCCAGTTTCTGTCGGTTTGCT 60.134 47.619 0.00 0.00 0.00 3.91
8678 12476 1.264288 CCAGTTTCTGTCGGTTTGCTC 59.736 52.381 0.00 0.00 0.00 4.26
8679 12477 2.213499 CAGTTTCTGTCGGTTTGCTCT 58.787 47.619 0.00 0.00 0.00 4.09
8680 12478 2.614057 CAGTTTCTGTCGGTTTGCTCTT 59.386 45.455 0.00 0.00 0.00 2.85
8681 12479 3.065371 CAGTTTCTGTCGGTTTGCTCTTT 59.935 43.478 0.00 0.00 0.00 2.52
8683 12481 3.691049 TTCTGTCGGTTTGCTCTTTTG 57.309 42.857 0.00 0.00 0.00 2.44
8684 12482 1.333619 TCTGTCGGTTTGCTCTTTTGC 59.666 47.619 0.00 0.00 0.00 3.68
8686 12484 1.333619 TGTCGGTTTGCTCTTTTGCTC 59.666 47.619 0.00 0.00 0.00 4.26
8688 12486 1.873591 TCGGTTTGCTCTTTTGCTCTC 59.126 47.619 0.00 0.00 0.00 3.20
8691 12489 2.227626 GGTTTGCTCTTTTGCTCTCTCC 59.772 50.000 0.00 0.00 0.00 3.71
8692 12490 2.191128 TTGCTCTTTTGCTCTCTCCC 57.809 50.000 0.00 0.00 0.00 4.30
8693 12491 0.326264 TGCTCTTTTGCTCTCTCCCC 59.674 55.000 0.00 0.00 0.00 4.81
8694 12492 0.393673 GCTCTTTTGCTCTCTCCCCC 60.394 60.000 0.00 0.00 0.00 5.40
8695 12493 1.284313 CTCTTTTGCTCTCTCCCCCT 58.716 55.000 0.00 0.00 0.00 4.79
8696 12494 1.209261 CTCTTTTGCTCTCTCCCCCTC 59.791 57.143 0.00 0.00 0.00 4.30
8697 12495 1.203364 TCTTTTGCTCTCTCCCCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
8699 12497 1.280457 TTTGCTCTCTCCCCCTCTTC 58.720 55.000 0.00 0.00 0.00 2.87
8700 12498 0.618968 TTGCTCTCTCCCCCTCTTCC 60.619 60.000 0.00 0.00 0.00 3.46
8726 14067 5.598005 ACCATTGGATTGTTGTTCTTCTTCA 59.402 36.000 10.37 0.00 0.00 3.02
8746 14087 1.303888 CCTCCCAATGCTGCACTGT 60.304 57.895 10.41 0.00 0.00 3.55
8783 14124 2.496817 CCCGTGCCTGAGCTACTC 59.503 66.667 0.00 0.00 40.80 2.59
8810 14151 2.011947 GTGGGTTTATAAGTCGGGCAC 58.988 52.381 0.00 0.00 0.00 5.01
8833 14174 7.093992 CACAGTTTTTCAGGTCTTTGGTTTAA 58.906 34.615 0.00 0.00 0.00 1.52
8906 14247 9.214957 TGTCAAATGTAGTTTCTAACCACATAG 57.785 33.333 4.50 2.27 41.73 2.23
9042 14398 0.175760 TCAAGATTCTTCCTCCGGCG 59.824 55.000 0.00 0.00 0.00 6.46
9154 14560 7.924103 ATTTGAAATGTTACAACCTTCGTTC 57.076 32.000 0.00 0.00 0.00 3.95
9164 14570 9.053840 TGTTACAACCTTCGTTCACAAATATAA 57.946 29.630 0.00 0.00 0.00 0.98
9230 14637 7.472543 AGTGAGTGAACAAACACACTAAAATC 58.527 34.615 5.75 0.00 46.06 2.17
9287 14694 6.851222 AACATCTTATATTTGTGAGCGGAG 57.149 37.500 0.00 0.00 0.00 4.63
9312 14719 6.015688 GGGAGTATGATGCAATGTTTGATCAT 60.016 38.462 0.00 14.06 39.25 2.45
9319 14726 7.552459 TGATGCAATGTTTGATCATGATCTTT 58.448 30.769 30.65 16.13 38.60 2.52
9374 14787 3.753294 ACGCATTTATAGGGAGTGGAG 57.247 47.619 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.694535 ACGGAACTACTTAGAGATGCG 57.305 47.619 0.00 0.00 0.00 4.73
82 83 9.146984 TCAACATTTTCATACGGAACTACTTAG 57.853 33.333 0.00 0.00 34.56 2.18
83 84 9.146984 CTCAACATTTTCATACGGAACTACTTA 57.853 33.333 0.00 0.00 34.56 2.24
84 85 7.119262 CCTCAACATTTTCATACGGAACTACTT 59.881 37.037 0.00 0.00 34.56 2.24
93 94 6.961554 GCTAAGTTCCTCAACATTTTCATACG 59.038 38.462 0.00 0.00 34.60 3.06
95 96 7.994425 TGCTAAGTTCCTCAACATTTTCATA 57.006 32.000 0.00 0.00 34.60 2.15
102 103 4.851639 AGGATGCTAAGTTCCTCAACAT 57.148 40.909 0.00 0.00 37.89 2.71
203 204 7.032580 GGCTACACTATGATTAGCTCACATAG 58.967 42.308 22.01 22.01 44.88 2.23
216 217 4.466370 AGCACTACAAAGGCTACACTATGA 59.534 41.667 0.00 0.00 35.82 2.15
217 218 4.759782 AGCACTACAAAGGCTACACTATG 58.240 43.478 0.00 0.00 35.82 2.23
218 219 6.098409 ACATAGCACTACAAAGGCTACACTAT 59.902 38.462 0.00 0.00 42.36 2.12
225 226 3.118592 GGAGACATAGCACTACAAAGGCT 60.119 47.826 0.00 0.00 41.51 4.58
231 232 3.195610 CCTGTTGGAGACATAGCACTACA 59.804 47.826 0.00 0.00 42.32 2.74
240 241 4.384978 CCTTCATGATCCTGTTGGAGACAT 60.385 45.833 0.00 0.00 46.91 3.06
253 254 2.996249 TCTCTGGCACCTTCATGATC 57.004 50.000 0.00 0.00 0.00 2.92
266 267 3.606595 TGTCTTCATGCTCTTCTCTGG 57.393 47.619 0.00 0.00 0.00 3.86
268 269 4.869297 CGATTTGTCTTCATGCTCTTCTCT 59.131 41.667 0.00 0.00 0.00 3.10
279 280 1.623081 GCGACGGCGATTTGTCTTCA 61.623 55.000 18.90 0.00 40.82 3.02
292 293 0.664761 TCGGTTATAGAAGGCGACGG 59.335 55.000 0.00 0.00 0.00 4.79
305 306 2.427453 GAGCATCTTCTCTGGTCGGTTA 59.573 50.000 0.00 0.00 32.16 2.85
671 680 1.887956 GCAGAGGAGGGAAACAATGCA 60.888 52.381 0.00 0.00 32.79 3.96
674 683 2.731572 CATGCAGAGGAGGGAAACAAT 58.268 47.619 0.00 0.00 0.00 2.71
680 689 4.166888 GCGCATGCAGAGGAGGGA 62.167 66.667 19.57 0.00 42.15 4.20
682 691 4.519437 TCGCGCATGCAGAGGAGG 62.519 66.667 19.57 0.00 42.97 4.30
686 695 3.193614 AAGCTCGCGCATGCAGAG 61.194 61.111 26.67 26.67 42.97 3.35
688 697 2.319011 AATCAAGCTCGCGCATGCAG 62.319 55.000 19.57 11.23 42.97 4.41
689 698 1.088910 TAATCAAGCTCGCGCATGCA 61.089 50.000 19.57 0.00 42.97 3.96
690 699 0.027979 TTAATCAAGCTCGCGCATGC 59.972 50.000 7.91 7.91 39.10 4.06
691 700 2.456942 TTTAATCAAGCTCGCGCATG 57.543 45.000 8.75 0.00 39.10 4.06
692 701 2.677836 TCTTTTAATCAAGCTCGCGCAT 59.322 40.909 8.75 0.00 39.10 4.73
693 702 2.073056 TCTTTTAATCAAGCTCGCGCA 58.927 42.857 8.75 0.00 39.10 6.09
694 703 2.806288 TCTTTTAATCAAGCTCGCGC 57.194 45.000 0.00 0.00 0.00 6.86
705 714 9.573133 CGACTGAATTAGCCAATTTCTTTTAAT 57.427 29.630 0.00 0.00 34.44 1.40
710 719 6.575162 AACGACTGAATTAGCCAATTTCTT 57.425 33.333 0.00 0.00 34.44 2.52
741 750 3.059352 ACAACACATCTCAGTTAGGCC 57.941 47.619 0.00 0.00 0.00 5.19
799 811 9.845305 GCGTTTACTGTTTGATCTATATAACAC 57.155 33.333 0.00 0.00 0.00 3.32
800 812 9.589111 TGCGTTTACTGTTTGATCTATATAACA 57.411 29.630 0.00 0.00 0.00 2.41
801 813 9.845305 GTGCGTTTACTGTTTGATCTATATAAC 57.155 33.333 0.00 0.00 0.00 1.89
802 814 9.589111 TGTGCGTTTACTGTTTGATCTATATAA 57.411 29.630 0.00 0.00 0.00 0.98
803 815 9.758651 ATGTGCGTTTACTGTTTGATCTATATA 57.241 29.630 0.00 0.00 0.00 0.86
804 816 8.662781 ATGTGCGTTTACTGTTTGATCTATAT 57.337 30.769 0.00 0.00 0.00 0.86
805 817 8.487313 AATGTGCGTTTACTGTTTGATCTATA 57.513 30.769 0.00 0.00 0.00 1.31
806 818 6.985188 ATGTGCGTTTACTGTTTGATCTAT 57.015 33.333 0.00 0.00 0.00 1.98
807 819 6.425417 TGAATGTGCGTTTACTGTTTGATCTA 59.575 34.615 0.00 0.00 0.00 1.98
808 820 5.238432 TGAATGTGCGTTTACTGTTTGATCT 59.762 36.000 0.00 0.00 0.00 2.75
809 821 5.448438 TGAATGTGCGTTTACTGTTTGATC 58.552 37.500 0.00 0.00 0.00 2.92
810 822 5.431420 TGAATGTGCGTTTACTGTTTGAT 57.569 34.783 0.00 0.00 0.00 2.57
811 823 4.884458 TGAATGTGCGTTTACTGTTTGA 57.116 36.364 0.00 0.00 0.00 2.69
865 877 0.692419 TCCATTCTCCTCAGGCCTCC 60.692 60.000 0.00 0.00 0.00 4.30
911 923 4.409570 CTGGACGATGAAATTGCAAAGAG 58.590 43.478 1.71 0.00 0.00 2.85
912 924 3.366273 GCTGGACGATGAAATTGCAAAGA 60.366 43.478 1.71 0.00 0.00 2.52
1071 1083 4.772231 AGGCTAAGGACGGGCGGA 62.772 66.667 0.00 0.00 0.00 5.54
1278 1297 2.756400 GGTGGTGCCAGGATGTGA 59.244 61.111 0.00 0.00 37.17 3.58
1396 1415 0.179121 CACCGCACGCTTATACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1483 1502 7.801104 TCAAGCCCATAGTAAGAATATGTGAA 58.199 34.615 0.00 0.00 0.00 3.18
1784 1803 3.867600 GCAGATGCCGATACCTCATGATT 60.868 47.826 0.00 0.00 34.31 2.57
1797 1818 4.320494 GGGTAAAATTATCTGCAGATGCCG 60.320 45.833 34.48 0.09 41.18 5.69
1870 1891 9.930693 CAAGGATGAAGTCTTTTACTAGTAACT 57.069 33.333 14.96 6.97 37.50 2.24
1871 1892 9.708092 ACAAGGATGAAGTCTTTTACTAGTAAC 57.292 33.333 14.96 4.66 37.50 2.50
2236 2257 7.588497 AATTTTAGCTCAAGACAGGAAAAGT 57.412 32.000 0.00 0.00 0.00 2.66
2246 2267 9.466497 AGTATTGGATCAAATTTTAGCTCAAGA 57.534 29.630 0.00 0.00 0.00 3.02
2276 2297 7.673926 AGAAAATCCCCTTTAGCAGAATTAACA 59.326 33.333 0.00 0.00 0.00 2.41
2321 2342 2.700897 ACCATCTGTACATAGTCCAGCC 59.299 50.000 0.00 0.00 0.00 4.85
2414 2435 2.145397 TTGCAACTGGGTTTACCACA 57.855 45.000 0.00 0.00 46.80 4.17
2415 2436 5.400066 AATATTGCAACTGGGTTTACCAC 57.600 39.130 0.00 0.00 46.80 4.16
2567 2588 7.331193 AGCGTTTTAATTTTGGTTTGTTGTACA 59.669 29.630 0.00 0.00 0.00 2.90
2591 2644 5.656213 TTTCTAGTCCCACTACAGTTAGC 57.344 43.478 0.00 0.00 0.00 3.09
2595 2648 3.901844 TGCTTTTCTAGTCCCACTACAGT 59.098 43.478 0.00 0.00 0.00 3.55
2636 2697 4.227300 AGGGTGGTTGTGAGCTATTTGATA 59.773 41.667 0.00 0.00 0.00 2.15
2671 2732 1.202604 CCCCACAACACGACTAACACT 60.203 52.381 0.00 0.00 0.00 3.55
2688 2749 0.547553 TAAACCATAACCTCGGCCCC 59.452 55.000 0.00 0.00 0.00 5.80
2692 2753 3.433173 CCCCTTCTAAACCATAACCTCGG 60.433 52.174 0.00 0.00 0.00 4.63
2705 2766 9.510062 TTGTAAGGTCTATTTATCCCCTTCTAA 57.490 33.333 0.00 0.00 36.86 2.10
2717 2778 8.316214 TGGACGTAGATTTTGTAAGGTCTATTT 58.684 33.333 0.00 0.00 0.00 1.40
2729 2790 6.539324 TCGCTTAAATTGGACGTAGATTTTG 58.461 36.000 8.09 4.80 0.00 2.44
2906 4352 6.183360 GCTTGCAAATTTGTGTTTGAACCTTA 60.183 34.615 19.03 0.00 40.64 2.69
2925 4371 3.225798 GCCTTGGTGTGGCTTGCA 61.226 61.111 0.00 0.00 46.38 4.08
3031 4478 0.460284 CTCCGTGAAGATCAACCCCG 60.460 60.000 0.00 0.00 0.00 5.73
3261 4713 1.968493 TCTTGGACCGCTTAGTGTTCT 59.032 47.619 0.00 0.00 0.00 3.01
3264 4716 0.608640 CCTCTTGGACCGCTTAGTGT 59.391 55.000 0.00 0.00 34.57 3.55
3298 4750 4.408596 AGCCATTTTTCAGAGGGTTTGAAA 59.591 37.500 0.00 0.00 41.40 2.69
3386 4858 3.928375 GCAATTTTGATAGTGGCCTTGTG 59.072 43.478 3.32 0.00 0.00 3.33
3418 4890 8.790718 TCGGAAAGAGATAGTGGTATTGTATAC 58.209 37.037 0.00 0.00 0.00 1.47
3440 4912 9.139174 GCAAAAATCAAATAAATTCTTCTCGGA 57.861 29.630 0.00 0.00 0.00 4.55
3453 4925 7.068103 ACCATCATACGAGGCAAAAATCAAATA 59.932 33.333 0.00 0.00 0.00 1.40
3469 4941 4.749598 TGCATTAGTAAGCACCATCATACG 59.250 41.667 3.74 0.00 35.51 3.06
3495 4967 1.211212 TCTCTATGGCTGCATGCAACT 59.789 47.619 22.88 8.85 45.15 3.16
3622 5099 7.777095 TCCATTTTTGTATACAAGGCCATTAC 58.223 34.615 17.36 0.00 37.15 1.89
3664 5141 1.873591 GTGCAACGGTCAGATTTCTGT 59.126 47.619 7.42 0.00 44.12 3.41
3746 5276 2.031012 CGACAGCCAGCACTTCCA 59.969 61.111 0.00 0.00 0.00 3.53
3753 5283 1.448013 GGGTTACTCGACAGCCAGC 60.448 63.158 0.00 0.00 0.00 4.85
3864 5396 5.776173 ATTATCACTTCCGTACCTCTGAG 57.224 43.478 0.00 0.00 0.00 3.35
3898 5430 1.492764 GGTTCCTCTATTGACCCCGA 58.507 55.000 0.00 0.00 0.00 5.14
3929 5462 2.909965 TTGGCCGTTTCTGCACCC 60.910 61.111 0.00 0.00 0.00 4.61
3999 5532 4.717629 TTCGGCACAGCGTCTCGG 62.718 66.667 0.00 0.00 0.00 4.63
4000 5533 3.175240 CTTCGGCACAGCGTCTCG 61.175 66.667 0.00 0.00 0.00 4.04
4001 5534 3.482783 GCTTCGGCACAGCGTCTC 61.483 66.667 0.00 0.00 41.33 3.36
4011 5544 0.449388 CACCTCTCATTTGCTTCGGC 59.551 55.000 0.00 0.00 42.19 5.54
4059 5606 5.381184 TCTCTGTTAGCTCTGGTATCTCT 57.619 43.478 0.00 0.00 0.00 3.10
4096 5643 0.595095 CCTGTGCCACTGAGCTTTTC 59.405 55.000 2.97 0.00 0.00 2.29
4338 5886 9.739276 TCAGATTGAGTTTAAGGACAATTGTAT 57.261 29.630 11.95 3.70 33.92 2.29
4384 5932 6.565247 CGCTCGTGGTTTGTAATTTCTAGTTT 60.565 38.462 0.00 0.00 0.00 2.66
4404 5952 2.542595 AGTGGTTGTTTCTTTACGCTCG 59.457 45.455 0.00 0.00 0.00 5.03
4479 6032 5.107065 GGTTTATCAAGTTCAGTTCAGGACG 60.107 44.000 0.00 0.00 0.00 4.79
4597 6160 8.625786 TGACATATTGCTTACATGCTCAATAT 57.374 30.769 12.58 12.58 40.64 1.28
4637 6200 6.001460 TCTAACCAGTTTGTACCCTTTGATG 58.999 40.000 0.00 0.00 0.00 3.07
4660 6223 9.352784 TGTTATGTACTTTTAATTTGCAGCATC 57.647 29.630 0.00 0.00 0.00 3.91
4726 6289 5.420104 CCATAGAAGATTTTGCCTCAAAGGT 59.580 40.000 0.00 0.00 37.80 3.50
4912 6482 7.814107 CAGCATAATTTTCAAAAGAGCCAAGTA 59.186 33.333 0.00 0.00 0.00 2.24
4913 6483 6.647895 CAGCATAATTTTCAAAAGAGCCAAGT 59.352 34.615 0.00 0.00 0.00 3.16
4937 6507 3.576078 TTGGAGACCAAGAAAAGAGCA 57.424 42.857 0.00 0.00 38.75 4.26
4978 6548 6.176183 AGGAGCATAAAAATATGGATCGGAG 58.824 40.000 0.00 0.00 0.00 4.63
4979 6549 6.126863 AGGAGCATAAAAATATGGATCGGA 57.873 37.500 0.00 0.00 0.00 4.55
4980 6550 6.824305 AAGGAGCATAAAAATATGGATCGG 57.176 37.500 0.00 0.00 0.00 4.18
4990 6560 9.959749 CAACTTTGTACTAAAGGAGCATAAAAA 57.040 29.630 16.79 0.00 0.00 1.94
4991 6561 9.127277 ACAACTTTGTACTAAAGGAGCATAAAA 57.873 29.630 16.79 0.00 40.16 1.52
5009 6579 4.748102 TGACGCTCCTTTAGTACAACTTTG 59.252 41.667 0.00 0.00 0.00 2.77
5010 6580 4.952460 TGACGCTCCTTTAGTACAACTTT 58.048 39.130 0.00 0.00 0.00 2.66
5011 6581 4.595762 TGACGCTCCTTTAGTACAACTT 57.404 40.909 0.00 0.00 0.00 2.66
5012 6582 4.595762 TTGACGCTCCTTTAGTACAACT 57.404 40.909 0.00 0.00 0.00 3.16
5013 6583 5.857822 AATTGACGCTCCTTTAGTACAAC 57.142 39.130 0.00 0.00 0.00 3.32
5014 6584 9.826574 ATATTAATTGACGCTCCTTTAGTACAA 57.173 29.630 0.00 0.00 0.00 2.41
5015 6585 9.256477 CATATTAATTGACGCTCCTTTAGTACA 57.744 33.333 0.00 0.00 0.00 2.90
5016 6586 8.709646 CCATATTAATTGACGCTCCTTTAGTAC 58.290 37.037 0.00 0.00 0.00 2.73
5017 6587 8.644216 TCCATATTAATTGACGCTCCTTTAGTA 58.356 33.333 0.00 0.00 0.00 1.82
5018 6588 7.506114 TCCATATTAATTGACGCTCCTTTAGT 58.494 34.615 0.00 0.00 0.00 2.24
5019 6589 7.962964 TCCATATTAATTGACGCTCCTTTAG 57.037 36.000 0.00 0.00 0.00 1.85
5020 6590 8.154203 TGATCCATATTAATTGACGCTCCTTTA 58.846 33.333 0.00 0.00 0.00 1.85
5021 6591 6.998074 TGATCCATATTAATTGACGCTCCTTT 59.002 34.615 0.00 0.00 0.00 3.11
5022 6592 6.533730 TGATCCATATTAATTGACGCTCCTT 58.466 36.000 0.00 0.00 0.00 3.36
5023 6593 6.014242 TCTGATCCATATTAATTGACGCTCCT 60.014 38.462 0.00 0.00 0.00 3.69
5024 6594 6.166279 TCTGATCCATATTAATTGACGCTCC 58.834 40.000 0.00 0.00 0.00 4.70
5025 6595 6.312426 CCTCTGATCCATATTAATTGACGCTC 59.688 42.308 0.00 0.00 0.00 5.03
5026 6596 6.169094 CCTCTGATCCATATTAATTGACGCT 58.831 40.000 0.00 0.00 0.00 5.07
5027 6597 5.352569 CCCTCTGATCCATATTAATTGACGC 59.647 44.000 0.00 0.00 0.00 5.19
5028 6598 6.701340 TCCCTCTGATCCATATTAATTGACG 58.299 40.000 0.00 0.00 0.00 4.35
5029 6599 7.684529 ACTCCCTCTGATCCATATTAATTGAC 58.315 38.462 0.00 0.00 0.00 3.18
5030 6600 7.878621 ACTCCCTCTGATCCATATTAATTGA 57.121 36.000 0.00 0.00 0.00 2.57
5202 6772 1.621317 TGCTCCAGAATCCGTGTTGTA 59.379 47.619 0.00 0.00 0.00 2.41
5212 6782 4.581309 TTCAGAAAGGATGCTCCAGAAT 57.419 40.909 5.21 0.00 39.61 2.40
5274 6844 4.169856 TCATTTAACATTAGGGCCCATCCT 59.830 41.667 27.56 5.28 40.79 3.24
5301 6871 8.213518 TGAGGCAATTATTTAACAGAGTGATC 57.786 34.615 0.00 0.00 0.00 2.92
5306 6876 9.512435 CTTGATTGAGGCAATTATTTAACAGAG 57.488 33.333 0.00 0.00 33.90 3.35
5359 6929 7.011857 ACAATGAGATCTTCGAAAGGCTTAATC 59.988 37.037 0.00 0.00 0.00 1.75
5361 6931 6.173339 ACAATGAGATCTTCGAAAGGCTTAA 58.827 36.000 0.00 0.00 0.00 1.85
5366 6936 7.547370 AGAAACTACAATGAGATCTTCGAAAGG 59.453 37.037 0.00 0.00 0.00 3.11
5381 6951 8.429641 TGAAGGTCTTGTCTTAGAAACTACAAT 58.570 33.333 0.00 0.00 31.88 2.71
5385 6955 9.490379 GAATTGAAGGTCTTGTCTTAGAAACTA 57.510 33.333 0.00 0.00 0.00 2.24
5391 6961 7.360776 GCAAGAGAATTGAAGGTCTTGTCTTAG 60.361 40.741 11.45 1.39 45.12 2.18
5439 7009 9.996554 TCTATAAAGAAGATGTCACACAAGAAA 57.003 29.630 0.00 0.00 0.00 2.52
5531 7136 9.671279 CTAAAGATCATTTAAAGGGGCAAAAAT 57.329 29.630 0.00 0.00 0.00 1.82
5679 7284 1.819208 AACTGCTTGCACACTCGCA 60.819 52.632 0.00 0.00 41.03 5.10
5820 7425 4.142138 GGCGGTAGAACTGATATATCCAGG 60.142 50.000 10.25 3.57 36.03 4.45
5853 7458 4.551702 TCAAGCATTAGTAGAGGTGCAA 57.448 40.909 0.00 0.00 39.94 4.08
5927 7532 7.670140 TCGCCTCCAGAAGATAATAAAGAGATA 59.330 37.037 0.00 0.00 0.00 1.98
6075 7680 5.774498 AAAATCCTCCACAAACTTCTGAC 57.226 39.130 0.00 0.00 0.00 3.51
6150 7755 9.810231 CAATTAGGTTTCGAATTTGAATTTTGG 57.190 29.630 8.97 0.00 0.00 3.28
6434 8040 5.899631 AGGACACCCTTCAAGTAAAAGTA 57.100 39.130 0.00 0.00 40.78 2.24
6516 8122 6.143206 TCCCTCCACATTAGATTACAGATCA 58.857 40.000 0.00 0.00 0.00 2.92
6518 8124 6.042552 CACTCCCTCCACATTAGATTACAGAT 59.957 42.308 0.00 0.00 0.00 2.90
6531 8137 4.993705 ATAAGAAAACACTCCCTCCACA 57.006 40.909 0.00 0.00 0.00 4.17
6532 8138 9.110502 CTTTATATAAGAAAACACTCCCTCCAC 57.889 37.037 0.00 0.00 0.00 4.02
6590 8257 9.830186 ATATGGTAGATAGGAGTTCACAAGTAT 57.170 33.333 0.00 0.00 0.00 2.12
6592 8259 8.554490 AATATGGTAGATAGGAGTTCACAAGT 57.446 34.615 0.00 0.00 0.00 3.16
6593 8260 9.838339 AAAATATGGTAGATAGGAGTTCACAAG 57.162 33.333 0.00 0.00 0.00 3.16
6617 8284 0.856982 TGGGGGAAGCTCCTCAAAAA 59.143 50.000 4.72 0.00 39.37 1.94
6618 8285 0.856982 TTGGGGGAAGCTCCTCAAAA 59.143 50.000 4.28 0.00 43.71 2.44
6619 8286 2.562953 TTGGGGGAAGCTCCTCAAA 58.437 52.632 4.28 0.00 43.71 2.69
6620 8287 0.856982 TTTTGGGGGAAGCTCCTCAA 59.143 50.000 2.60 2.60 44.87 3.02
6621 8288 0.856982 TTTTTGGGGGAAGCTCCTCA 59.143 50.000 4.72 0.00 39.37 3.86
6622 8289 1.203063 ACTTTTTGGGGGAAGCTCCTC 60.203 52.381 0.00 0.00 35.85 3.71
6623 8290 0.860457 ACTTTTTGGGGGAAGCTCCT 59.140 50.000 0.00 0.00 36.57 3.69
6624 8291 1.618837 GAACTTTTTGGGGGAAGCTCC 59.381 52.381 0.00 0.00 35.23 4.70
6625 8292 2.316108 TGAACTTTTTGGGGGAAGCTC 58.684 47.619 0.00 0.00 0.00 4.09
6626 8293 2.434336 GTTGAACTTTTTGGGGGAAGCT 59.566 45.455 0.00 0.00 0.00 3.74
6627 8294 2.434336 AGTTGAACTTTTTGGGGGAAGC 59.566 45.455 0.00 0.00 0.00 3.86
6628 8295 4.161377 TCAAGTTGAACTTTTTGGGGGAAG 59.839 41.667 8.03 0.00 36.03 3.46
6629 8296 4.097418 TCAAGTTGAACTTTTTGGGGGAA 58.903 39.130 8.03 0.00 36.03 3.97
6630 8297 3.714144 TCAAGTTGAACTTTTTGGGGGA 58.286 40.909 8.03 0.00 36.03 4.81
6631 8298 4.479786 TTCAAGTTGAACTTTTTGGGGG 57.520 40.909 14.35 0.00 36.03 5.40
6632 8299 5.427378 ACATTCAAGTTGAACTTTTTGGGG 58.573 37.500 20.26 0.00 39.45 4.96
6633 8300 5.523552 GGACATTCAAGTTGAACTTTTTGGG 59.476 40.000 20.26 0.00 39.45 4.12
6634 8301 5.523552 GGGACATTCAAGTTGAACTTTTTGG 59.476 40.000 20.26 7.05 39.45 3.28
6635 8302 6.105333 TGGGACATTCAAGTTGAACTTTTTG 58.895 36.000 20.26 15.80 39.45 2.44
6636 8303 6.293004 TGGGACATTCAAGTTGAACTTTTT 57.707 33.333 20.26 1.58 39.45 1.94
6637 8304 5.930837 TGGGACATTCAAGTTGAACTTTT 57.069 34.783 20.26 1.97 39.45 2.27
6638 8305 5.930837 TTGGGACATTCAAGTTGAACTTT 57.069 34.783 20.26 7.70 39.45 2.66
6639 8306 6.484364 AATTGGGACATTCAAGTTGAACTT 57.516 33.333 20.26 4.45 39.45 2.66
6640 8307 7.781324 ATAATTGGGACATTCAAGTTGAACT 57.219 32.000 20.26 8.73 39.45 3.01
6641 8308 9.353999 GTAATAATTGGGACATTCAAGTTGAAC 57.646 33.333 20.26 8.16 39.45 3.18
6642 8309 8.527810 GGTAATAATTGGGACATTCAAGTTGAA 58.472 33.333 20.14 20.14 41.09 2.69
6643 8310 7.148154 CGGTAATAATTGGGACATTCAAGTTGA 60.148 37.037 0.08 0.08 39.30 3.18
6644 8311 6.972328 CGGTAATAATTGGGACATTCAAGTTG 59.028 38.462 0.00 0.00 39.30 3.16
7028 8695 5.648092 CCTCTCTAAGGGTATTTGTGGTTTG 59.352 44.000 0.00 0.00 42.03 2.93
7043 8710 6.097915 ACGATACTCTCTCTCCTCTCTAAG 57.902 45.833 0.00 0.00 0.00 2.18
7098 8789 2.777692 TCACCTTCTCTCCACCTTTGTT 59.222 45.455 0.00 0.00 0.00 2.83
7101 8792 4.401925 CAAATCACCTTCTCTCCACCTTT 58.598 43.478 0.00 0.00 0.00 3.11
7102 8793 3.245052 CCAAATCACCTTCTCTCCACCTT 60.245 47.826 0.00 0.00 0.00 3.50
7103 8794 2.307098 CCAAATCACCTTCTCTCCACCT 59.693 50.000 0.00 0.00 0.00 4.00
7104 8795 2.619074 CCCAAATCACCTTCTCTCCACC 60.619 54.545 0.00 0.00 0.00 4.61
7105 8796 2.305927 TCCCAAATCACCTTCTCTCCAC 59.694 50.000 0.00 0.00 0.00 4.02
7106 8797 2.305927 GTCCCAAATCACCTTCTCTCCA 59.694 50.000 0.00 0.00 0.00 3.86
7107 8798 2.356227 GGTCCCAAATCACCTTCTCTCC 60.356 54.545 0.00 0.00 0.00 3.71
7108 8799 2.678190 CGGTCCCAAATCACCTTCTCTC 60.678 54.545 0.00 0.00 0.00 3.20
7109 8800 1.279271 CGGTCCCAAATCACCTTCTCT 59.721 52.381 0.00 0.00 0.00 3.10
7110 8801 1.003233 ACGGTCCCAAATCACCTTCTC 59.997 52.381 0.00 0.00 0.00 2.87
7111 8802 1.064825 ACGGTCCCAAATCACCTTCT 58.935 50.000 0.00 0.00 0.00 2.85
7132 8823 6.925610 TTTGCCATCTAGATATCAACACAC 57.074 37.500 4.54 0.00 0.00 3.82
7136 8827 7.041098 ACCGAATTTTGCCATCTAGATATCAAC 60.041 37.037 4.54 0.91 0.00 3.18
7163 8854 4.623932 TTTCTGAGTAGACAGCCACATT 57.376 40.909 0.00 0.00 37.75 2.71
7254 8945 2.545742 GGTTGGTTGGTTGAACATCAGC 60.546 50.000 0.00 0.00 36.12 4.26
7263 8954 3.006247 CAAAACTTGGGTTGGTTGGTTG 58.994 45.455 0.00 0.00 35.63 3.77
7299 8990 5.313712 ACTACAAAACCATCCAACTACCAG 58.686 41.667 0.00 0.00 0.00 4.00
7338 9029 0.736325 CGTAACTCTTGCCCGGACTG 60.736 60.000 0.73 0.00 0.00 3.51
7500 9191 0.657312 TGCACTGCTCAAGTTTGACG 59.343 50.000 1.98 0.00 36.83 4.35
7520 9211 5.557891 ATCTACAGATTCTGCTTTGTTGC 57.442 39.130 13.64 0.00 34.37 4.17
7860 9551 4.007581 TCCCCCACATAGAGATGAAAGA 57.992 45.455 0.00 0.00 36.48 2.52
7988 9679 9.985318 GAGAAACTGATAAAGATTCATGTGAAG 57.015 33.333 1.65 0.00 39.52 3.02
7989 9680 9.730705 AGAGAAACTGATAAAGATTCATGTGAA 57.269 29.630 0.00 0.00 39.52 3.18
8009 9700 5.930837 ACAAATCCCACAAAACAGAGAAA 57.069 34.783 0.00 0.00 0.00 2.52
8051 9742 3.847780 AGGGGGTAGTTACTTATGCAACA 59.152 43.478 0.00 0.00 0.00 3.33
8069 9760 5.001874 GGCTTATATTTAAGAACGGAGGGG 58.998 45.833 7.07 0.00 37.59 4.79
8086 9777 9.920946 TGTATTGGAATCTCTAAAAAGGCTTAT 57.079 29.630 0.00 0.00 0.00 1.73
8087 9778 9.396022 CTGTATTGGAATCTCTAAAAAGGCTTA 57.604 33.333 0.00 0.00 0.00 3.09
8088 9779 8.109634 TCTGTATTGGAATCTCTAAAAAGGCTT 58.890 33.333 0.00 0.00 0.00 4.35
8089 9780 7.554476 GTCTGTATTGGAATCTCTAAAAAGGCT 59.446 37.037 0.00 0.00 0.00 4.58
8132 9837 8.857216 ACGTATTTTAAAGTGTAGATTCACTCG 58.143 33.333 0.00 0.63 46.25 4.18
8201 9906 5.861727 TCCCTCCGTTTCTAAATATAAGCC 58.138 41.667 0.00 0.00 0.00 4.35
8225 9930 6.071616 GGGTTTGGACACAAGAAATATGCTAA 60.072 38.462 0.00 0.00 37.97 3.09
8229 9934 4.081697 GGGGGTTTGGACACAAGAAATATG 60.082 45.833 0.00 0.00 37.97 1.78
8279 9985 6.016777 ACAGGTGTTGAATTTCAAGCTCTAAG 60.017 38.462 12.02 3.08 37.00 2.18
8539 12337 2.307496 AGGCACATCCAACCATTCAA 57.693 45.000 0.00 0.00 37.29 2.69
8670 12468 2.227626 GGAGAGAGCAAAAGAGCAAACC 59.772 50.000 0.00 0.00 36.85 3.27
8675 12473 0.393673 GGGGGAGAGAGCAAAAGAGC 60.394 60.000 0.00 0.00 0.00 4.09
8676 12474 1.209261 GAGGGGGAGAGAGCAAAAGAG 59.791 57.143 0.00 0.00 0.00 2.85
8677 12475 1.203364 AGAGGGGGAGAGAGCAAAAGA 60.203 52.381 0.00 0.00 0.00 2.52
8678 12476 1.284313 AGAGGGGGAGAGAGCAAAAG 58.716 55.000 0.00 0.00 0.00 2.27
8679 12477 1.630878 GAAGAGGGGGAGAGAGCAAAA 59.369 52.381 0.00 0.00 0.00 2.44
8680 12478 1.280457 GAAGAGGGGGAGAGAGCAAA 58.720 55.000 0.00 0.00 0.00 3.68
8681 12479 0.618968 GGAAGAGGGGGAGAGAGCAA 60.619 60.000 0.00 0.00 0.00 3.91
8683 12481 0.618968 TTGGAAGAGGGGGAGAGAGC 60.619 60.000 0.00 0.00 0.00 4.09
8684 12482 1.199615 GTTGGAAGAGGGGGAGAGAG 58.800 60.000 0.00 0.00 0.00 3.20
8686 12484 0.547712 TGGTTGGAAGAGGGGGAGAG 60.548 60.000 0.00 0.00 0.00 3.20
8688 12486 1.002857 AATGGTTGGAAGAGGGGGAG 58.997 55.000 0.00 0.00 0.00 4.30
8700 12498 5.846203 AGAAGAACAACAATCCAATGGTTG 58.154 37.500 0.00 6.14 45.52 3.77
8726 14067 0.395311 CAGTGCAGCATTGGGAGGAT 60.395 55.000 10.05 0.00 0.00 3.24
8746 14087 1.635817 GGCAGCATGAGGGGGACTAA 61.636 60.000 0.00 0.00 39.69 2.24
8810 14151 7.224557 CCATTAAACCAAAGACCTGAAAAACTG 59.775 37.037 0.00 0.00 0.00 3.16
8906 14247 5.818136 ATGTATAACATGCCACAAGACAC 57.182 39.130 0.00 0.00 37.45 3.67
8946 14287 3.428862 CGGGCATGGGTTTTTATGTCTTC 60.429 47.826 0.00 0.00 0.00 2.87
9042 14398 2.665185 AAGACAACGTGGCTCGCC 60.665 61.111 9.11 0.00 31.94 5.54
9149 14555 8.568794 TCCAAAACATGTTATATTTGTGAACGA 58.431 29.630 12.39 2.62 32.29 3.85
9203 14610 6.811253 TTAGTGTGTTTGTTCACTCACTTT 57.189 33.333 12.33 0.00 45.06 2.66
9263 14670 6.260936 CCTCCGCTCACAAATATAAGATGTTT 59.739 38.462 0.00 0.00 0.00 2.83
9283 14690 2.224378 ACATTGCATCATACTCCCTCCG 60.224 50.000 0.00 0.00 0.00 4.63
9287 14694 5.300034 TGATCAAACATTGCATCATACTCCC 59.700 40.000 0.00 0.00 0.00 4.30
9312 14719 2.940994 TCGAACCCCACAAAAGATCA 57.059 45.000 0.00 0.00 0.00 2.92
9319 14726 2.034999 GCCCATCGAACCCCACAA 59.965 61.111 0.00 0.00 0.00 3.33
9374 14787 6.801377 TCAACGCACATATCAATTTTCAAGTC 59.199 34.615 0.00 0.00 0.00 3.01
9418 14831 5.979517 CCTAAATTTAATGGCTAGTGCTTGC 59.020 40.000 0.00 0.00 39.59 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.