Multiple sequence alignment - TraesCS1A01G160700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G160700 chr1A 100.000 9685 0 0 1 9685 288861057 288870741 0.000000e+00 17885.0
1 TraesCS1A01G160700 chr1A 90.657 289 25 2 472 758 436890192 436890480 5.490000e-102 383.0
2 TraesCS1A01G160700 chr1D 97.180 7802 170 18 1113 8890 222720971 222728746 0.000000e+00 13143.0
3 TraesCS1A01G160700 chr1D 97.578 702 12 3 8894 9592 222730618 222731317 0.000000e+00 1197.0
4 TraesCS1A01G160700 chr1D 91.667 432 21 5 3 421 222719081 222719510 1.400000e-162 584.0
5 TraesCS1A01G160700 chr1D 90.411 146 4 3 755 890 222719621 222719766 5.970000e-42 183.0
6 TraesCS1A01G160700 chr1D 87.500 112 5 2 887 990 222720487 222720597 4.750000e-23 121.0
7 TraesCS1A01G160700 chr1D 95.890 73 3 0 349 421 398932614 398932686 1.710000e-22 119.0
8 TraesCS1A01G160700 chr1D 93.671 79 5 0 349 427 409962508 409962430 1.710000e-22 119.0
9 TraesCS1A01G160700 chr1D 93.671 79 5 0 349 427 442410774 442410696 1.710000e-22 119.0
10 TraesCS1A01G160700 chr1D 97.917 48 1 0 9638 9685 222731316 222731363 6.230000e-12 84.2
11 TraesCS1A01G160700 chr1D 100.000 37 0 0 5172 5208 139120289 139120253 1.750000e-07 69.4
12 TraesCS1A01G160700 chr1D 100.000 29 0 0 1233 1261 439746773 439746801 5.000000e-03 54.7
13 TraesCS1A01G160700 chr1B 93.964 3098 133 27 5023 8087 322107685 322110761 0.000000e+00 4636.0
14 TraesCS1A01G160700 chr1B 93.279 1979 78 16 2592 4532 322105143 322107104 0.000000e+00 2867.0
15 TraesCS1A01G160700 chr1B 93.712 1638 68 10 8080 9685 322111367 322113001 0.000000e+00 2422.0
16 TraesCS1A01G160700 chr1B 96.429 812 26 3 983 1792 322103363 322104173 0.000000e+00 1336.0
17 TraesCS1A01G160700 chr1B 94.378 498 25 1 4531 5025 322107144 322107641 0.000000e+00 761.0
18 TraesCS1A01G160700 chr1B 91.304 391 19 4 1716 2097 322104164 322104548 4.010000e-143 520.0
19 TraesCS1A01G160700 chr1B 88.068 352 21 3 2096 2431 322104630 322104976 1.960000e-106 398.0
20 TraesCS1A01G160700 chr1B 91.166 283 23 2 471 752 599316573 599316854 5.490000e-102 383.0
21 TraesCS1A01G160700 chr1B 91.188 261 15 1 2304 2556 322104889 322105149 2.000000e-91 348.0
22 TraesCS1A01G160700 chr1B 86.905 168 7 3 834 987 322102312 322102478 3.600000e-39 174.0
23 TraesCS1A01G160700 chr1B 87.654 81 10 0 2292 2372 322104925 322105005 2.880000e-15 95.3
24 TraesCS1A01G160700 chr4D 90.676 429 33 4 3 429 328140903 328140480 1.830000e-156 564.0
25 TraesCS1A01G160700 chr4D 95.890 73 3 0 349 421 346288336 346288408 1.710000e-22 119.0
26 TraesCS1A01G160700 chr4D 94.805 77 3 1 345 421 508513431 508513506 1.710000e-22 119.0
27 TraesCS1A01G160700 chr4D 94.444 54 3 0 5172 5225 123585619 123585566 6.230000e-12 84.2
28 TraesCS1A01G160700 chr4D 92.593 54 4 0 5172 5225 123374828 123374775 2.900000e-10 78.7
29 TraesCS1A01G160700 chr4D 92.157 51 4 0 5175 5225 442063676 442063726 1.350000e-08 73.1
30 TraesCS1A01G160700 chr5D 89.091 440 28 7 3 427 440659329 440658895 6.660000e-146 529.0
31 TraesCS1A01G160700 chr5D 94.444 54 3 0 5172 5225 472204150 472204203 6.230000e-12 84.2
32 TraesCS1A01G160700 chr2B 88.479 434 27 9 3 421 765800675 765800250 4.040000e-138 503.0
33 TraesCS1A01G160700 chr5A 87.788 434 32 10 3 421 459325016 459325443 1.130000e-133 488.0
34 TraesCS1A01G160700 chr5A 91.039 279 25 0 474 752 471410878 471410600 2.550000e-100 377.0
35 TraesCS1A01G160700 chr4A 87.416 445 30 12 3 427 632956869 632956431 1.130000e-133 488.0
36 TraesCS1A01G160700 chr2D 87.731 432 27 13 3 415 651016625 651017049 1.890000e-131 481.0
37 TraesCS1A01G160700 chr2D 87.414 437 29 9 3 421 155174657 155175085 6.800000e-131 479.0
38 TraesCS1A01G160700 chr2D 96.296 54 2 0 5172 5225 17960182 17960235 1.340000e-13 89.8
39 TraesCS1A01G160700 chr7B 86.207 435 38 12 3 421 367192517 367192089 1.480000e-122 451.0
40 TraesCS1A01G160700 chr2A 85.809 451 28 18 3 429 716527675 716527237 6.900000e-121 446.0
41 TraesCS1A01G160700 chr6B 92.199 282 22 0 475 756 41757460 41757179 5.450000e-107 399.0
42 TraesCS1A01G160700 chr6B 91.228 285 25 0 468 752 518679768 518680052 1.180000e-103 388.0
43 TraesCS1A01G160700 chr6B 94.444 54 3 0 5172 5225 525685235 525685182 6.230000e-12 84.2
44 TraesCS1A01G160700 chr7A 91.971 274 22 0 477 750 24933416 24933689 1.530000e-102 385.0
45 TraesCS1A01G160700 chr7A 90.747 281 26 0 475 755 625741272 625740992 9.180000e-100 375.0
46 TraesCS1A01G160700 chr6A 91.367 278 24 0 473 750 140608409 140608132 1.970000e-101 381.0
47 TraesCS1A01G160700 chr6A 91.039 279 25 0 475 753 287314274 287314552 2.550000e-100 377.0
48 TraesCS1A01G160700 chr6D 93.827 81 5 0 349 429 338195606 338195686 1.320000e-23 122.0
49 TraesCS1A01G160700 chr3D 95.890 73 3 0 349 421 20890616 20890688 1.710000e-22 119.0
50 TraesCS1A01G160700 chr7D 94.444 54 3 0 5172 5225 307057877 307057930 6.230000e-12 84.2
51 TraesCS1A01G160700 chr7D 94.444 54 3 0 5172 5225 382004312 382004365 6.230000e-12 84.2
52 TraesCS1A01G160700 chr7D 94.444 54 3 0 5172 5225 382007124 382007177 6.230000e-12 84.2
53 TraesCS1A01G160700 chr7D 92.593 54 3 1 5172 5225 349230715 349230767 1.040000e-09 76.8
54 TraesCS1A01G160700 chr4B 94.444 54 3 0 5172 5225 209142559 209142612 6.230000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G160700 chr1A 288861057 288870741 9684 False 17885.000000 17885 100.000000 1 9685 1 chr1A.!!$F1 9684
1 TraesCS1A01G160700 chr1D 222719081 222731363 12282 False 2552.033333 13143 93.708833 3 9685 6 chr1D.!!$F3 9682
2 TraesCS1A01G160700 chr1B 322102312 322113001 10689 False 1355.730000 4636 91.688100 834 9685 10 chr1B.!!$F2 8851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 382 0.721718 CTAGGCGCTGCACTTTACAC 59.278 55.000 7.64 0.00 0.00 2.90 F
1084 2788 0.324645 CCCAATCCACAGGAAAGGGG 60.325 60.000 14.92 10.54 42.51 4.79 F
2256 4128 1.274167 TGGGAGATACCGTGTCAACAC 59.726 52.381 3.13 3.13 43.15 3.32 F
3219 5146 0.174162 GGCATGCTTACTGCTTTGGG 59.826 55.000 18.92 0.00 43.37 4.12 F
3919 5851 1.691434 CAGAGGGCCATAGAAGAGGAC 59.309 57.143 6.18 0.00 0.00 3.85 F
4912 6919 2.537143 CCTGTGGTAGAGTGGGTTAGT 58.463 52.381 0.00 0.00 0.00 2.24 F
6061 8136 0.396435 AGTGATTCGGACCAGTTGCA 59.604 50.000 0.00 0.00 0.00 4.08 F
7232 9315 1.584175 CTCAGCTTATCTGCAGCAGG 58.416 55.000 22.62 7.29 42.56 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 4103 0.178068 ACACGGTATCTCCCACATGC 59.822 55.000 0.00 0.00 0.00 4.06 R
2545 4468 1.470979 GGCAGCCAATCATGAAGCTTG 60.471 52.381 2.10 7.81 31.93 4.01 R
3919 5851 0.816825 AAGCTGCATCCACATAGCGG 60.817 55.000 1.02 0.00 40.92 5.52 R
4902 6909 2.158050 ACCCTGGAGTAACTAACCCACT 60.158 50.000 0.00 0.00 0.00 4.00 R
5321 7384 0.391661 CCAGCTGCCTGAACATACGT 60.392 55.000 8.66 0.00 41.77 3.57 R
6530 8605 1.462616 TAGCTGGCATGCGTTCAAAT 58.537 45.000 12.44 0.00 38.13 2.32 R
7445 9529 1.081892 CAAACCCAGATGCAGTCTCG 58.918 55.000 0.00 0.00 34.00 4.04 R
8693 11417 2.626266 TCACCTTGAACTGCGTCTCTTA 59.374 45.455 0.00 0.00 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 74 7.940688 ACAATATCTCACATCTCCATGCAAATA 59.059 33.333 0.00 0.00 32.57 1.40
119 121 2.896685 TCCCCAAACTAGCAACAAATGG 59.103 45.455 0.00 0.00 0.00 3.16
159 161 3.824001 TGGATCAAAACAAGGGGATCA 57.176 42.857 0.00 0.00 38.27 2.92
208 210 4.215399 TGACTTCGAAATCCATGGACAAAC 59.785 41.667 18.99 8.21 0.00 2.93
221 223 5.697633 CCATGGACAAACTCTTCAAATTTGG 59.302 40.000 17.90 4.61 37.59 3.28
231 233 7.601705 ACTCTTCAAATTTGGAAGATTTGGA 57.398 32.000 22.25 7.48 46.88 3.53
236 238 7.838079 TCAAATTTGGAAGATTTGGAGAAGA 57.162 32.000 17.90 0.00 42.14 2.87
237 239 8.426569 TCAAATTTGGAAGATTTGGAGAAGAT 57.573 30.769 17.90 0.00 42.14 2.40
245 247 7.725397 TGGAAGATTTGGAGAAGATTTTGAGAA 59.275 33.333 0.00 0.00 0.00 2.87
249 251 4.307032 TGGAGAAGATTTTGAGAAGGGG 57.693 45.455 0.00 0.00 0.00 4.79
250 252 3.916349 TGGAGAAGATTTTGAGAAGGGGA 59.084 43.478 0.00 0.00 0.00 4.81
251 253 4.018960 TGGAGAAGATTTTGAGAAGGGGAG 60.019 45.833 0.00 0.00 0.00 4.30
252 254 4.226168 GGAGAAGATTTTGAGAAGGGGAGA 59.774 45.833 0.00 0.00 0.00 3.71
253 255 5.427378 GAGAAGATTTTGAGAAGGGGAGAG 58.573 45.833 0.00 0.00 0.00 3.20
254 256 5.097234 AGAAGATTTTGAGAAGGGGAGAGA 58.903 41.667 0.00 0.00 0.00 3.10
274 276 2.674754 GGCAAATCTCGGGTGGGA 59.325 61.111 0.00 0.00 0.00 4.37
293 295 4.952102 TGCTTTGGGGGTTGGGGC 62.952 66.667 0.00 0.00 0.00 5.80
320 322 3.695825 GAGAGTGGGGGAGGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
351 365 4.321750 GCCAACTAGTAACAGACAGTGCTA 60.322 45.833 0.00 0.00 0.00 3.49
368 382 0.721718 CTAGGCGCTGCACTTTACAC 59.278 55.000 7.64 0.00 0.00 2.90
429 443 1.452108 CCCAGGGGCTTTCACGATC 60.452 63.158 0.00 0.00 0.00 3.69
430 444 1.299648 CCAGGGGCTTTCACGATCA 59.700 57.895 0.00 0.00 0.00 2.92
431 445 0.745845 CCAGGGGCTTTCACGATCAG 60.746 60.000 0.00 0.00 0.00 2.90
433 447 1.078143 GGGGCTTTCACGATCAGCT 60.078 57.895 2.41 0.00 33.76 4.24
437 451 1.674221 GGCTTTCACGATCAGCTGAGT 60.674 52.381 22.96 12.68 33.76 3.41
438 452 1.392853 GCTTTCACGATCAGCTGAGTG 59.607 52.381 23.50 23.50 36.06 3.51
444 510 5.072040 TCACGATCAGCTGAGTGAAATAA 57.928 39.130 27.49 11.63 40.19 1.40
450 516 8.946085 ACGATCAGCTGAGTGAAATAATTTTAA 58.054 29.630 22.96 0.00 0.00 1.52
453 519 8.862325 TCAGCTGAGTGAAATAATTTTAAGGA 57.138 30.769 13.74 0.00 0.00 3.36
456 522 8.734386 AGCTGAGTGAAATAATTTTAAGGACAG 58.266 33.333 0.00 0.00 0.00 3.51
491 557 9.970395 ATAAATTGATTAGTGCATGTACAATGG 57.030 29.630 16.62 0.00 0.00 3.16
492 558 7.408756 AATTGATTAGTGCATGTACAATGGT 57.591 32.000 16.62 0.00 0.00 3.55
493 559 5.816449 TGATTAGTGCATGTACAATGGTG 57.184 39.130 16.62 0.00 0.00 4.17
494 560 4.096231 TGATTAGTGCATGTACAATGGTGC 59.904 41.667 16.62 11.42 38.05 5.01
495 561 2.205022 AGTGCATGTACAATGGTGCT 57.795 45.000 16.62 0.00 38.37 4.40
496 562 3.348647 AGTGCATGTACAATGGTGCTA 57.651 42.857 16.62 4.57 38.37 3.49
497 563 3.889815 AGTGCATGTACAATGGTGCTAT 58.110 40.909 16.62 5.99 38.37 2.97
498 564 3.879295 AGTGCATGTACAATGGTGCTATC 59.121 43.478 16.62 9.74 38.37 2.08
499 565 3.879295 GTGCATGTACAATGGTGCTATCT 59.121 43.478 17.52 0.00 38.37 1.98
500 566 4.336433 GTGCATGTACAATGGTGCTATCTT 59.664 41.667 17.52 0.00 38.37 2.40
501 567 5.527214 GTGCATGTACAATGGTGCTATCTTA 59.473 40.000 17.52 0.00 38.37 2.10
502 568 5.759763 TGCATGTACAATGGTGCTATCTTAG 59.240 40.000 17.52 0.00 38.37 2.18
503 569 5.180117 GCATGTACAATGGTGCTATCTTAGG 59.820 44.000 11.12 0.00 34.85 2.69
504 570 6.524734 CATGTACAATGGTGCTATCTTAGGA 58.475 40.000 0.00 0.00 0.00 2.94
505 571 6.161855 TGTACAATGGTGCTATCTTAGGAG 57.838 41.667 0.00 0.00 0.00 3.69
506 572 5.661312 TGTACAATGGTGCTATCTTAGGAGT 59.339 40.000 0.00 0.00 0.00 3.85
507 573 5.028549 ACAATGGTGCTATCTTAGGAGTG 57.971 43.478 0.00 0.00 0.00 3.51
508 574 3.760580 ATGGTGCTATCTTAGGAGTGC 57.239 47.619 0.00 0.00 0.00 4.40
509 575 1.762957 TGGTGCTATCTTAGGAGTGCC 59.237 52.381 0.70 0.00 0.00 5.01
510 576 1.762957 GGTGCTATCTTAGGAGTGCCA 59.237 52.381 0.00 0.00 36.29 4.92
511 577 2.483889 GGTGCTATCTTAGGAGTGCCAC 60.484 54.545 0.00 0.00 36.29 5.01
512 578 1.409064 TGCTATCTTAGGAGTGCCACG 59.591 52.381 0.00 0.00 36.29 4.94
513 579 1.409427 GCTATCTTAGGAGTGCCACGT 59.591 52.381 0.00 0.00 36.29 4.49
514 580 2.621998 GCTATCTTAGGAGTGCCACGTA 59.378 50.000 0.00 0.00 36.29 3.57
515 581 3.304794 GCTATCTTAGGAGTGCCACGTAG 60.305 52.174 0.00 0.00 36.29 3.51
516 582 1.471119 TCTTAGGAGTGCCACGTAGG 58.529 55.000 0.00 0.00 41.84 3.18
517 583 1.005097 TCTTAGGAGTGCCACGTAGGA 59.995 52.381 8.04 0.00 41.22 2.94
518 584 2.032620 CTTAGGAGTGCCACGTAGGAT 58.967 52.381 8.04 0.00 41.22 3.24
519 585 3.117776 TCTTAGGAGTGCCACGTAGGATA 60.118 47.826 8.04 0.00 41.22 2.59
520 586 2.154567 AGGAGTGCCACGTAGGATAA 57.845 50.000 8.04 0.00 41.22 1.75
521 587 2.463752 AGGAGTGCCACGTAGGATAAA 58.536 47.619 8.04 0.00 41.22 1.40
522 588 3.039011 AGGAGTGCCACGTAGGATAAAT 58.961 45.455 8.04 0.00 41.22 1.40
523 589 3.131396 GGAGTGCCACGTAGGATAAATG 58.869 50.000 8.04 0.00 41.22 2.32
524 590 3.181469 GGAGTGCCACGTAGGATAAATGA 60.181 47.826 8.04 0.00 41.22 2.57
525 591 4.503296 GGAGTGCCACGTAGGATAAATGAT 60.503 45.833 8.04 0.00 41.22 2.45
526 592 4.380531 AGTGCCACGTAGGATAAATGATG 58.619 43.478 8.04 0.00 41.22 3.07
527 593 4.100963 AGTGCCACGTAGGATAAATGATGA 59.899 41.667 8.04 0.00 41.22 2.92
528 594 4.449068 GTGCCACGTAGGATAAATGATGAG 59.551 45.833 8.04 0.00 41.22 2.90
529 595 3.997021 GCCACGTAGGATAAATGATGAGG 59.003 47.826 8.04 0.00 41.22 3.86
530 596 4.503296 GCCACGTAGGATAAATGATGAGGT 60.503 45.833 8.04 0.00 41.22 3.85
531 597 4.991056 CCACGTAGGATAAATGATGAGGTG 59.009 45.833 0.00 0.00 41.22 4.00
532 598 4.991056 CACGTAGGATAAATGATGAGGTGG 59.009 45.833 0.00 0.00 0.00 4.61
533 599 4.899457 ACGTAGGATAAATGATGAGGTGGA 59.101 41.667 0.00 0.00 0.00 4.02
534 600 5.011125 ACGTAGGATAAATGATGAGGTGGAG 59.989 44.000 0.00 0.00 0.00 3.86
535 601 5.243954 CGTAGGATAAATGATGAGGTGGAGA 59.756 44.000 0.00 0.00 0.00 3.71
536 602 6.239317 CGTAGGATAAATGATGAGGTGGAGAA 60.239 42.308 0.00 0.00 0.00 2.87
537 603 6.185114 AGGATAAATGATGAGGTGGAGAAG 57.815 41.667 0.00 0.00 0.00 2.85
538 604 5.907662 AGGATAAATGATGAGGTGGAGAAGA 59.092 40.000 0.00 0.00 0.00 2.87
539 605 6.388100 AGGATAAATGATGAGGTGGAGAAGAA 59.612 38.462 0.00 0.00 0.00 2.52
540 606 7.056635 GGATAAATGATGAGGTGGAGAAGAAA 58.943 38.462 0.00 0.00 0.00 2.52
541 607 7.228308 GGATAAATGATGAGGTGGAGAAGAAAG 59.772 40.741 0.00 0.00 0.00 2.62
542 608 5.768980 AATGATGAGGTGGAGAAGAAAGA 57.231 39.130 0.00 0.00 0.00 2.52
543 609 5.768980 ATGATGAGGTGGAGAAGAAAGAA 57.231 39.130 0.00 0.00 0.00 2.52
544 610 4.899502 TGATGAGGTGGAGAAGAAAGAAC 58.100 43.478 0.00 0.00 0.00 3.01
545 611 4.594920 TGATGAGGTGGAGAAGAAAGAACT 59.405 41.667 0.00 0.00 0.00 3.01
546 612 4.608948 TGAGGTGGAGAAGAAAGAACTC 57.391 45.455 0.00 0.00 0.00 3.01
547 613 3.967326 TGAGGTGGAGAAGAAAGAACTCA 59.033 43.478 0.00 0.00 33.00 3.41
548 614 4.594920 TGAGGTGGAGAAGAAAGAACTCAT 59.405 41.667 0.00 0.00 33.00 2.90
549 615 5.780282 TGAGGTGGAGAAGAAAGAACTCATA 59.220 40.000 0.00 0.00 33.00 2.15
550 616 6.270000 TGAGGTGGAGAAGAAAGAACTCATAA 59.730 38.462 0.00 0.00 33.00 1.90
551 617 6.706295 AGGTGGAGAAGAAAGAACTCATAAG 58.294 40.000 0.00 0.00 33.00 1.73
552 618 6.498651 AGGTGGAGAAGAAAGAACTCATAAGA 59.501 38.462 0.00 0.00 33.00 2.10
553 619 7.016661 AGGTGGAGAAGAAAGAACTCATAAGAA 59.983 37.037 0.00 0.00 33.00 2.52
554 620 7.661847 GGTGGAGAAGAAAGAACTCATAAGAAA 59.338 37.037 0.00 0.00 33.00 2.52
555 621 9.057089 GTGGAGAAGAAAGAACTCATAAGAAAA 57.943 33.333 0.00 0.00 33.00 2.29
556 622 9.277783 TGGAGAAGAAAGAACTCATAAGAAAAG 57.722 33.333 0.00 0.00 33.00 2.27
557 623 8.726068 GGAGAAGAAAGAACTCATAAGAAAAGG 58.274 37.037 0.00 0.00 33.00 3.11
558 624 8.105097 AGAAGAAAGAACTCATAAGAAAAGGC 57.895 34.615 0.00 0.00 0.00 4.35
559 625 7.941790 AGAAGAAAGAACTCATAAGAAAAGGCT 59.058 33.333 0.00 0.00 0.00 4.58
560 626 8.470657 AAGAAAGAACTCATAAGAAAAGGCTT 57.529 30.769 0.00 0.00 0.00 4.35
561 627 7.880105 AGAAAGAACTCATAAGAAAAGGCTTG 58.120 34.615 0.00 0.00 0.00 4.01
562 628 7.503902 AGAAAGAACTCATAAGAAAAGGCTTGT 59.496 33.333 0.00 0.00 0.00 3.16
563 629 6.809630 AGAACTCATAAGAAAAGGCTTGTC 57.190 37.500 9.51 9.51 0.00 3.18
564 630 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
565 631 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
566 632 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
567 633 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
568 634 7.001073 ACTCATAAGAAAAGGCTTGTCTTCTT 58.999 34.615 30.86 26.01 40.36 2.52
569 635 7.503902 ACTCATAAGAAAAGGCTTGTCTTCTTT 59.496 33.333 30.86 17.01 38.65 2.52
570 636 8.237811 TCATAAGAAAAGGCTTGTCTTCTTTT 57.762 30.769 30.86 18.78 41.59 2.27
571 637 9.349713 TCATAAGAAAAGGCTTGTCTTCTTTTA 57.650 29.630 30.86 16.85 39.78 1.52
613 679 9.709495 GAGATGATCTCTTAGCACAATTTATCT 57.291 33.333 14.98 0.00 40.30 1.98
653 719 9.989869 GAAATTGTTAGTTACTGAAGATAAGGC 57.010 33.333 0.00 0.00 0.00 4.35
654 720 9.740710 AAATTGTTAGTTACTGAAGATAAGGCT 57.259 29.630 0.00 0.00 0.00 4.58
657 723 9.871238 TTGTTAGTTACTGAAGATAAGGCTAAG 57.129 33.333 0.00 0.00 0.00 2.18
658 724 9.251440 TGTTAGTTACTGAAGATAAGGCTAAGA 57.749 33.333 0.00 0.00 0.00 2.10
728 794 8.940768 TGCAAGACTTAAAATAAAACTGCTTT 57.059 26.923 0.00 0.00 0.00 3.51
745 811 9.638239 AAACTGCTTTATTAACCATTGTACATG 57.362 29.630 0.00 0.00 0.00 3.21
746 812 7.257722 ACTGCTTTATTAACCATTGTACATGC 58.742 34.615 0.00 0.00 0.00 4.06
747 813 6.568869 TGCTTTATTAACCATTGTACATGCC 58.431 36.000 0.00 0.00 0.00 4.40
748 814 5.983118 GCTTTATTAACCATTGTACATGCCC 59.017 40.000 0.00 0.00 0.00 5.36
749 815 6.183360 GCTTTATTAACCATTGTACATGCCCT 60.183 38.462 0.00 0.00 0.00 5.19
750 816 7.632680 GCTTTATTAACCATTGTACATGCCCTT 60.633 37.037 0.00 0.00 0.00 3.95
751 817 8.824756 TTTATTAACCATTGTACATGCCCTTA 57.175 30.769 0.00 0.00 0.00 2.69
752 818 6.709018 ATTAACCATTGTACATGCCCTTAC 57.291 37.500 0.00 0.00 0.00 2.34
753 819 3.730215 ACCATTGTACATGCCCTTACA 57.270 42.857 0.00 0.00 0.00 2.41
760 826 4.657013 TGTACATGCCCTTACATTCACAA 58.343 39.130 0.00 0.00 0.00 3.33
767 833 6.716934 TGCCCTTACATTCACAAGTTAAAA 57.283 33.333 0.00 0.00 0.00 1.52
781 847 9.160496 TCACAAGTTAAAATTGTCAAATTTGCT 57.840 25.926 13.54 4.63 43.63 3.91
784 850 6.648502 AGTTAAAATTGTCAAATTTGCTGCG 58.351 32.000 13.54 0.00 43.63 5.18
785 851 4.471157 AAAATTGTCAAATTTGCTGCGG 57.529 36.364 13.54 0.00 43.63 5.69
787 853 2.132740 TTGTCAAATTTGCTGCGGAC 57.867 45.000 13.54 5.96 0.00 4.79
792 868 1.862602 AAATTTGCTGCGGACGGGAC 61.863 55.000 0.00 0.00 0.00 4.46
809 885 4.918201 CCCCTCGGCTCATTCGGC 62.918 72.222 0.00 0.00 0.00 5.54
983 1797 2.258726 AAACAGGTTTCGCTCGCCC 61.259 57.895 0.00 0.00 0.00 6.13
1007 2711 3.124921 CCCACCCGTCATGTTCGC 61.125 66.667 7.34 0.00 0.00 4.70
1083 2787 3.288099 CCCAATCCACAGGAAAGGG 57.712 57.895 10.56 10.56 41.28 3.95
1084 2788 0.324645 CCCAATCCACAGGAAAGGGG 60.325 60.000 14.92 10.54 42.51 4.79
1501 3205 2.683859 CGGTGGAGCGAGTACGTCA 61.684 63.158 0.00 0.00 41.98 4.35
1905 3677 5.485708 AGACCATCTATACTTGCCTTATCCC 59.514 44.000 0.00 0.00 0.00 3.85
2196 4060 3.242739 GCTTAGCACCATAACATGTTCCG 60.243 47.826 15.85 7.27 0.00 4.30
2256 4128 1.274167 TGGGAGATACCGTGTCAACAC 59.726 52.381 3.13 3.13 43.15 3.32
2266 4138 4.385825 ACCGTGTCAACACTTGTATTGAT 58.614 39.130 11.23 0.00 44.34 2.57
2357 4272 2.024751 ACCGTTAATAGGCCCAATGGTT 60.025 45.455 12.74 0.00 38.16 3.67
2415 4338 9.249457 TCAGTGATCTAATAGATTTACAAAGCG 57.751 33.333 15.84 0.00 34.53 4.68
2429 4352 2.813754 ACAAAGCGTGCATCATACTGTT 59.186 40.909 0.00 0.00 0.00 3.16
2436 4359 4.727734 GCGTGCATCATACTGTTGTTTAGG 60.728 45.833 0.00 0.00 0.00 2.69
2545 4468 6.465084 ACTACCTTTCTGAAATCACACTACC 58.535 40.000 2.88 0.00 0.00 3.18
2601 4524 5.464168 CAAAAAGGTCTTACTTCATGGCAG 58.536 41.667 0.00 0.00 0.00 4.85
2821 4747 7.764141 TTGCTGATATACCATGTGCATATTT 57.236 32.000 0.00 0.00 0.00 1.40
2855 4781 9.884636 TGTCAAGATATTTTTCCTCTTAATCGA 57.115 29.630 0.00 0.00 0.00 3.59
2873 4799 8.893219 TTAATCGATTGCTTCTATCAGATTGT 57.107 30.769 20.87 0.00 32.69 2.71
2889 4816 4.646040 CAGATTGTAAATTCCTGATGGCCA 59.354 41.667 8.56 8.56 0.00 5.36
3030 4957 9.922305 GCAATATCTGAGTTACATGTAAGAAAC 57.078 33.333 18.56 9.66 0.00 2.78
3106 5033 2.803386 TCATTTTAGTTCGCTTGCGACA 59.197 40.909 17.53 6.51 0.00 4.35
3219 5146 0.174162 GGCATGCTTACTGCTTTGGG 59.826 55.000 18.92 0.00 43.37 4.12
3315 5243 6.940298 TCACCGAAAATTTCTCTCACCTATTT 59.060 34.615 4.09 0.00 0.00 1.40
3334 5262 9.642343 ACCTATTTTATTTACTTTCCCCATCTC 57.358 33.333 0.00 0.00 0.00 2.75
3455 5387 5.771469 TGTGACAGGCTGTTCAATTTTATG 58.229 37.500 22.98 0.00 0.00 1.90
3457 5389 6.183360 TGTGACAGGCTGTTCAATTTTATGTT 60.183 34.615 22.98 0.00 0.00 2.71
3472 5404 5.736951 TTTATGTTTTGTGCTATTGGGCT 57.263 34.783 0.00 0.00 0.00 5.19
3696 5628 3.354948 TGTACTAGTTCTGCTCCGGTA 57.645 47.619 0.00 0.00 0.00 4.02
3919 5851 1.691434 CAGAGGGCCATAGAAGAGGAC 59.309 57.143 6.18 0.00 0.00 3.85
4507 6470 4.793201 AGCTTTCCCAAGTTTCTGTTAGT 58.207 39.130 0.00 0.00 31.86 2.24
4513 6476 5.070001 TCCCAAGTTTCTGTTAGTCATTGG 58.930 41.667 0.00 0.00 36.53 3.16
4661 6665 4.388790 GTCGATACGTGGCAAAAAGTTAC 58.611 43.478 0.00 0.00 0.00 2.50
4851 6855 8.070769 GGATGACTTGAGTTCTTAGTTTTGTTC 58.929 37.037 0.00 0.00 0.00 3.18
4898 6905 6.210185 AGAGATGAAAAAGAAAATCCCTGTGG 59.790 38.462 0.00 0.00 0.00 4.17
4902 6909 6.369629 TGAAAAAGAAAATCCCTGTGGTAGA 58.630 36.000 0.00 0.00 0.00 2.59
4912 6919 2.537143 CCTGTGGTAGAGTGGGTTAGT 58.463 52.381 0.00 0.00 0.00 2.24
4961 6968 4.268644 CGCCTATGCCATTATAGAATGACG 59.731 45.833 11.65 0.00 44.59 4.35
5063 7125 6.538742 TGGTAGTGAAATCAGTAAGCTTATGC 59.461 38.462 9.88 0.00 33.94 3.14
5298 7361 9.171701 TCACGTGTGTTTTATTTGCTAAAATAC 57.828 29.630 16.51 8.63 44.92 1.89
5486 7559 3.193903 TCCCACTCATCACAAATTGCATG 59.806 43.478 0.00 0.00 0.00 4.06
5508 7581 4.463539 TGAGTAGAATGCCAAGTTACCGTA 59.536 41.667 0.00 0.00 0.00 4.02
5705 7778 3.884895 TGCCATGTTTCGACTTCCATAT 58.115 40.909 0.00 0.00 0.00 1.78
5875 7950 0.764890 TGGCAAGTGTAGCTGTCCTT 59.235 50.000 0.00 0.00 0.00 3.36
5961 8036 8.090214 ACAACAATTGCTATCTAACAATTTGCT 58.910 29.630 5.05 0.00 42.34 3.91
6061 8136 0.396435 AGTGATTCGGACCAGTTGCA 59.604 50.000 0.00 0.00 0.00 4.08
6154 8229 3.535561 AGGAACACGATGAAGGCATAAG 58.464 45.455 0.00 0.00 34.11 1.73
6338 8413 6.822676 AGATTTCAGAGGAAGATGATGACAAC 59.177 38.462 0.00 0.00 33.82 3.32
6392 8467 7.386025 TCACAAGATATTGGCGATGAAGATAAG 59.614 37.037 4.88 0.00 0.00 1.73
6530 8605 4.703897 CTTCACAGTCCTCACCTAAAACA 58.296 43.478 0.00 0.00 0.00 2.83
6696 8771 4.641396 TGGTGATCTCAAGTTTGATCGTT 58.359 39.130 9.67 0.00 41.24 3.85
6938 9013 7.432869 CACCACCTTTTGTCTTGATGATAAAA 58.567 34.615 3.69 3.69 41.34 1.52
6940 9015 9.308000 ACCACCTTTTGTCTTGATGATAAAATA 57.692 29.630 4.06 0.00 42.19 1.40
7075 9157 6.748658 CACTATGAATCGTTTTCGTACCACTA 59.251 38.462 0.00 0.00 44.46 2.74
7227 9310 3.701205 TTTCACCTCAGCTTATCTGCA 57.299 42.857 0.00 0.00 42.56 4.41
7232 9315 1.584175 CTCAGCTTATCTGCAGCAGG 58.416 55.000 22.62 7.29 42.56 4.85
7343 9426 5.584913 TCTCTTCAGATCCTCTTAGTGGTT 58.415 41.667 0.00 0.00 0.00 3.67
7394 9477 8.865420 AGCTTTTCATGATATCATTATCTGCT 57.135 30.769 15.74 17.56 36.07 4.24
7445 9529 4.650131 AGGTACTTCTTGGCAGGTCTATAC 59.350 45.833 0.00 0.00 27.25 1.47
7514 9598 1.153289 CGGTCAATGGCAGGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
7534 9618 3.113824 AGGATTCATCTGAGGAGCACTT 58.886 45.455 0.00 0.00 0.00 3.16
7612 9696 1.202770 GCCAGCGGGTCAGGTATTATT 60.203 52.381 4.36 0.00 36.17 1.40
7613 9697 2.038033 GCCAGCGGGTCAGGTATTATTA 59.962 50.000 4.36 0.00 36.17 0.98
7614 9698 3.307480 GCCAGCGGGTCAGGTATTATTAT 60.307 47.826 4.36 0.00 36.17 1.28
7643 9727 7.092137 TGATTTATGTCCTTCTCATTTGCAG 57.908 36.000 0.00 0.00 0.00 4.41
7686 9771 7.455641 TGGGTACATTGATGTTTAATTTCGT 57.544 32.000 1.46 0.00 41.97 3.85
7717 9802 5.141182 AGTTCTCTCTGGTAAGAAGTGTGA 58.859 41.667 0.00 0.00 34.62 3.58
7742 9827 4.522722 TTCATGCATTGCACATTCTTGA 57.477 36.364 14.66 9.79 43.04 3.02
7752 9837 7.148540 GCATTGCACATTCTTGAATAATTGTGT 60.149 33.333 3.15 0.04 0.00 3.72
7790 9876 4.019591 ACAGAACATTCTTAGGGGTACCAC 60.020 45.833 15.35 11.04 43.97 4.16
7815 9901 3.190327 TCAATATTTGGAGTTGCACACCG 59.810 43.478 0.00 0.00 30.99 4.94
7821 9907 1.346395 TGGAGTTGCACACCGATACTT 59.654 47.619 0.00 0.00 30.99 2.24
7833 9919 6.129194 GCACACCGATACTTTGAATTTTTCAC 60.129 38.462 0.00 0.00 39.87 3.18
7839 9925 6.458592 CGATACTTTGAATTTTTCACGTCGAG 59.541 38.462 0.00 0.00 39.87 4.04
7842 9928 5.293569 ACTTTGAATTTTTCACGTCGAGTCT 59.706 36.000 0.00 0.00 39.87 3.24
7916 10002 7.489757 GTGGTCATGTAGAGTAATTGAGAGTTC 59.510 40.741 0.00 0.00 0.00 3.01
7962 10048 6.721208 ACACCTTAATTCCTGTTGATGTCATT 59.279 34.615 0.00 0.00 0.00 2.57
9025 13619 5.500825 CAAAGCCAAAACAAGTGCATAAAC 58.499 37.500 0.00 0.00 0.00 2.01
9334 13936 7.127186 TGAGAATCCTACCATGTTTGATCCTTA 59.873 37.037 0.00 0.00 0.00 2.69
9335 13937 8.050316 AGAATCCTACCATGTTTGATCCTTAT 57.950 34.615 0.00 0.00 0.00 1.73
9417 14019 2.535012 TGAATGCAGTCCACGTTACA 57.465 45.000 12.27 0.00 0.00 2.41
9425 14027 2.736721 CAGTCCACGTTACATTGTCAGG 59.263 50.000 0.00 0.00 0.00 3.86
9523 14127 5.139482 CGTGTCATTGATTACACAGTGTTG 58.861 41.667 12.53 2.81 44.98 3.33
9592 14197 1.059584 TGCCCTCAGTCCAAGAACCA 61.060 55.000 0.00 0.00 0.00 3.67
9593 14198 0.329596 GCCCTCAGTCCAAGAACCAT 59.670 55.000 0.00 0.00 0.00 3.55
9594 14199 1.272147 GCCCTCAGTCCAAGAACCATT 60.272 52.381 0.00 0.00 0.00 3.16
9595 14200 2.440409 CCCTCAGTCCAAGAACCATTG 58.560 52.381 0.00 0.00 0.00 2.82
9596 14201 2.224867 CCCTCAGTCCAAGAACCATTGT 60.225 50.000 0.00 0.00 0.00 2.71
9597 14202 2.816087 CCTCAGTCCAAGAACCATTGTG 59.184 50.000 0.00 0.00 0.00 3.33
9598 14203 3.480470 CTCAGTCCAAGAACCATTGTGT 58.520 45.455 0.00 0.00 0.00 3.72
9599 14204 3.885297 CTCAGTCCAAGAACCATTGTGTT 59.115 43.478 0.00 0.00 0.00 3.32
9600 14205 3.882888 TCAGTCCAAGAACCATTGTGTTC 59.117 43.478 8.93 8.93 43.95 3.18
9601 14206 3.004734 CAGTCCAAGAACCATTGTGTTCC 59.995 47.826 11.86 1.37 44.55 3.62
9602 14207 2.296190 GTCCAAGAACCATTGTGTTCCC 59.704 50.000 11.86 0.00 44.55 3.97
9603 14208 2.091610 TCCAAGAACCATTGTGTTCCCA 60.092 45.455 11.86 0.00 44.55 4.37
9604 14209 2.297033 CCAAGAACCATTGTGTTCCCAG 59.703 50.000 11.86 5.40 44.55 4.45
9605 14210 3.221771 CAAGAACCATTGTGTTCCCAGA 58.778 45.455 11.86 0.00 44.55 3.86
9606 14211 3.146104 AGAACCATTGTGTTCCCAGAG 57.854 47.619 11.86 0.00 44.55 3.35
9607 14212 2.711009 AGAACCATTGTGTTCCCAGAGA 59.289 45.455 11.86 0.00 44.55 3.10
9608 14213 2.568623 ACCATTGTGTTCCCAGAGAC 57.431 50.000 0.00 0.00 0.00 3.36
9609 14214 1.073923 ACCATTGTGTTCCCAGAGACC 59.926 52.381 0.00 0.00 0.00 3.85
9610 14215 1.073763 CCATTGTGTTCCCAGAGACCA 59.926 52.381 0.00 0.00 0.00 4.02
9611 14216 2.154462 CATTGTGTTCCCAGAGACCAC 58.846 52.381 0.00 0.00 0.00 4.16
9612 14217 1.208706 TTGTGTTCCCAGAGACCACA 58.791 50.000 0.00 0.00 34.47 4.17
9613 14218 1.434188 TGTGTTCCCAGAGACCACAT 58.566 50.000 0.00 0.00 31.55 3.21
9614 14219 1.072173 TGTGTTCCCAGAGACCACATG 59.928 52.381 0.00 0.00 31.55 3.21
9615 14220 1.347707 GTGTTCCCAGAGACCACATGA 59.652 52.381 0.00 0.00 0.00 3.07
9616 14221 2.026822 GTGTTCCCAGAGACCACATGAT 60.027 50.000 0.00 0.00 0.00 2.45
9617 14222 2.237143 TGTTCCCAGAGACCACATGATC 59.763 50.000 0.00 0.00 0.00 2.92
9618 14223 2.237143 GTTCCCAGAGACCACATGATCA 59.763 50.000 0.00 0.00 0.00 2.92
9619 14224 1.833630 TCCCAGAGACCACATGATCAC 59.166 52.381 0.00 0.00 0.00 3.06
9620 14225 1.556451 CCCAGAGACCACATGATCACA 59.444 52.381 0.00 0.00 0.00 3.58
9621 14226 2.026915 CCCAGAGACCACATGATCACAA 60.027 50.000 0.00 0.00 0.00 3.33
9622 14227 3.268330 CCAGAGACCACATGATCACAAG 58.732 50.000 0.00 0.00 0.00 3.16
9623 14228 2.676839 CAGAGACCACATGATCACAAGC 59.323 50.000 0.00 0.00 0.00 4.01
9624 14229 2.570752 AGAGACCACATGATCACAAGCT 59.429 45.455 0.00 0.00 0.00 3.74
9625 14230 3.008813 AGAGACCACATGATCACAAGCTT 59.991 43.478 0.00 0.00 0.00 3.74
9626 14231 3.341823 AGACCACATGATCACAAGCTTC 58.658 45.455 0.00 0.00 0.00 3.86
9627 14232 2.421424 GACCACATGATCACAAGCTTCC 59.579 50.000 0.00 0.00 0.00 3.46
9628 14233 2.224843 ACCACATGATCACAAGCTTCCA 60.225 45.455 0.00 0.00 0.00 3.53
9629 14234 2.422479 CCACATGATCACAAGCTTCCAG 59.578 50.000 0.00 0.00 0.00 3.86
9630 14235 3.079578 CACATGATCACAAGCTTCCAGT 58.920 45.455 0.00 0.00 0.00 4.00
9631 14236 3.504906 CACATGATCACAAGCTTCCAGTT 59.495 43.478 0.00 0.00 0.00 3.16
9632 14237 3.504906 ACATGATCACAAGCTTCCAGTTG 59.495 43.478 0.00 0.00 0.00 3.16
9633 14238 3.213206 TGATCACAAGCTTCCAGTTGT 57.787 42.857 0.00 0.00 37.37 3.32
9634 14239 3.554934 TGATCACAAGCTTCCAGTTGTT 58.445 40.909 0.00 0.00 34.62 2.83
9635 14240 3.953612 TGATCACAAGCTTCCAGTTGTTT 59.046 39.130 0.00 0.00 34.62 2.83
9636 14241 3.781079 TCACAAGCTTCCAGTTGTTTG 57.219 42.857 0.00 0.00 34.62 2.93
9637 14242 2.159254 TCACAAGCTTCCAGTTGTTTGC 60.159 45.455 0.00 0.00 34.62 3.68
9638 14243 1.136891 ACAAGCTTCCAGTTGTTTGCC 59.863 47.619 0.00 0.00 32.93 4.52
9639 14244 1.136695 CAAGCTTCCAGTTGTTTGCCA 59.863 47.619 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.262496 GGCTTGTTAGAATGTTAGGGTTATCC 59.738 42.308 0.00 0.00 0.00 2.59
1 2 7.054751 AGGCTTGTTAGAATGTTAGGGTTATC 58.945 38.462 0.00 0.00 0.00 1.75
15 16 9.342308 CAATTTCCTATGATTAGGCTTGTTAGA 57.658 33.333 0.00 0.00 44.20 2.10
50 52 7.914859 AGATATTTGCATGGAGATGTGAGATA 58.085 34.615 0.09 0.00 31.50 1.98
72 74 8.568617 AACCCTAGTTTTGTATGGATCTAGAT 57.431 34.615 4.47 4.47 29.61 1.98
119 121 7.816995 TGATCCAAGTAATGTTAACAAATTGCC 59.183 33.333 13.23 5.82 0.00 4.52
159 161 4.294347 CCTCCCTCAAGGTAATCTTCTCT 58.706 47.826 0.00 0.00 36.75 3.10
208 210 7.889469 TCTCCAAATCTTCCAAATTTGAAGAG 58.111 34.615 24.30 17.26 43.60 2.85
221 223 8.242739 CCTTCTCAAAATCTTCTCCAAATCTTC 58.757 37.037 0.00 0.00 0.00 2.87
231 233 5.097234 TCTCTCCCCTTCTCAAAATCTTCT 58.903 41.667 0.00 0.00 0.00 2.85
236 238 2.849318 CCCTCTCTCCCCTTCTCAAAAT 59.151 50.000 0.00 0.00 0.00 1.82
237 239 2.269940 CCCTCTCTCCCCTTCTCAAAA 58.730 52.381 0.00 0.00 0.00 2.44
245 247 0.990818 GATTTGCCCCTCTCTCCCCT 60.991 60.000 0.00 0.00 0.00 4.79
249 251 0.105778 CCGAGATTTGCCCCTCTCTC 59.894 60.000 5.36 0.00 36.56 3.20
250 252 1.341156 CCCGAGATTTGCCCCTCTCT 61.341 60.000 5.36 0.00 36.56 3.10
251 253 1.147153 CCCGAGATTTGCCCCTCTC 59.853 63.158 0.00 0.00 35.58 3.20
252 254 1.616628 ACCCGAGATTTGCCCCTCT 60.617 57.895 0.00 0.00 0.00 3.69
253 255 1.452108 CACCCGAGATTTGCCCCTC 60.452 63.158 0.00 0.00 0.00 4.30
254 256 2.677228 CACCCGAGATTTGCCCCT 59.323 61.111 0.00 0.00 0.00 4.79
274 276 1.538629 CCCCAACCCCCAAAGCATT 60.539 57.895 0.00 0.00 0.00 3.56
293 295 2.126307 CCACTCTCTCCACGCACG 60.126 66.667 0.00 0.00 0.00 5.34
297 299 2.037367 TCCCCCACTCTCTCCACG 59.963 66.667 0.00 0.00 0.00 4.94
302 304 3.700350 CCCCCTCCCCCACTCTCT 61.700 72.222 0.00 0.00 0.00 3.10
320 322 1.196104 TTACTAGTTGGCTGGCCGGT 61.196 55.000 14.55 0.00 39.42 5.28
323 325 1.278127 TCTGTTACTAGTTGGCTGGCC 59.722 52.381 0.00 4.43 0.00 5.36
331 333 4.082136 GCCTAGCACTGTCTGTTACTAGTT 60.082 45.833 0.00 0.00 33.91 2.24
351 365 2.317609 CGTGTAAAGTGCAGCGCCT 61.318 57.895 2.29 0.00 0.00 5.52
372 386 4.277593 CCTCAGAGCTAGGCGCCG 62.278 72.222 23.20 9.22 40.39 6.46
421 435 3.385193 TTTCACTCAGCTGATCGTGAA 57.615 42.857 32.01 32.01 42.61 3.18
422 436 3.599730 ATTTCACTCAGCTGATCGTGA 57.400 42.857 26.48 26.48 34.85 4.35
425 439 9.430838 CTTAAAATTATTTCACTCAGCTGATCG 57.569 33.333 18.63 11.50 0.00 3.69
427 441 9.466497 TCCTTAAAATTATTTCACTCAGCTGAT 57.534 29.630 18.63 3.37 0.00 2.90
429 443 8.514594 TGTCCTTAAAATTATTTCACTCAGCTG 58.485 33.333 7.63 7.63 0.00 4.24
430 444 8.635765 TGTCCTTAAAATTATTTCACTCAGCT 57.364 30.769 0.00 0.00 0.00 4.24
431 445 8.515414 ACTGTCCTTAAAATTATTTCACTCAGC 58.485 33.333 0.00 0.00 0.00 4.26
467 533 7.760794 CACCATTGTACATGCACTAATCAATTT 59.239 33.333 0.00 0.00 0.00 1.82
470 536 5.392919 GCACCATTGTACATGCACTAATCAA 60.393 40.000 13.07 0.00 38.00 2.57
476 542 2.205022 AGCACCATTGTACATGCACT 57.795 45.000 18.64 0.00 40.63 4.40
477 543 3.879295 AGATAGCACCATTGTACATGCAC 59.121 43.478 18.64 10.75 40.63 4.57
478 544 4.155063 AGATAGCACCATTGTACATGCA 57.845 40.909 18.64 7.55 40.63 3.96
479 545 5.180117 CCTAAGATAGCACCATTGTACATGC 59.820 44.000 10.53 10.53 38.39 4.06
480 546 6.524734 TCCTAAGATAGCACCATTGTACATG 58.475 40.000 0.00 0.00 0.00 3.21
481 547 6.327626 ACTCCTAAGATAGCACCATTGTACAT 59.672 38.462 0.00 0.00 0.00 2.29
482 548 5.661312 ACTCCTAAGATAGCACCATTGTACA 59.339 40.000 0.00 0.00 0.00 2.90
483 549 5.986135 CACTCCTAAGATAGCACCATTGTAC 59.014 44.000 0.00 0.00 0.00 2.90
484 550 5.453339 GCACTCCTAAGATAGCACCATTGTA 60.453 44.000 0.00 0.00 0.00 2.41
485 551 4.684485 GCACTCCTAAGATAGCACCATTGT 60.684 45.833 0.00 0.00 0.00 2.71
486 552 3.812053 GCACTCCTAAGATAGCACCATTG 59.188 47.826 0.00 0.00 0.00 2.82
487 553 3.181450 GGCACTCCTAAGATAGCACCATT 60.181 47.826 0.00 0.00 0.00 3.16
488 554 2.370189 GGCACTCCTAAGATAGCACCAT 59.630 50.000 0.00 0.00 0.00 3.55
489 555 1.762957 GGCACTCCTAAGATAGCACCA 59.237 52.381 0.00 0.00 0.00 4.17
490 556 1.762957 TGGCACTCCTAAGATAGCACC 59.237 52.381 0.00 0.00 0.00 5.01
491 557 2.799917 CGTGGCACTCCTAAGATAGCAC 60.800 54.545 16.72 0.00 0.00 4.40
492 558 1.409064 CGTGGCACTCCTAAGATAGCA 59.591 52.381 16.72 0.00 0.00 3.49
493 559 1.409427 ACGTGGCACTCCTAAGATAGC 59.591 52.381 16.72 0.00 0.00 2.97
494 560 3.253677 CCTACGTGGCACTCCTAAGATAG 59.746 52.174 16.72 0.00 0.00 2.08
495 561 3.117776 TCCTACGTGGCACTCCTAAGATA 60.118 47.826 16.72 0.00 35.26 1.98
496 562 2.032620 CCTACGTGGCACTCCTAAGAT 58.967 52.381 16.72 0.00 0.00 2.40
497 563 1.005097 TCCTACGTGGCACTCCTAAGA 59.995 52.381 16.72 2.12 35.26 2.10
498 564 1.471119 TCCTACGTGGCACTCCTAAG 58.529 55.000 16.72 0.92 35.26 2.18
499 565 2.154567 ATCCTACGTGGCACTCCTAA 57.845 50.000 16.72 0.00 35.26 2.69
500 566 3.301794 TTATCCTACGTGGCACTCCTA 57.698 47.619 16.72 1.46 35.26 2.94
501 567 2.154567 TTATCCTACGTGGCACTCCT 57.845 50.000 16.72 0.21 35.26 3.69
502 568 2.973694 TTTATCCTACGTGGCACTCC 57.026 50.000 16.72 0.00 35.26 3.85
503 569 4.054780 TCATTTATCCTACGTGGCACTC 57.945 45.455 16.72 0.00 35.26 3.51
504 570 4.100963 TCATCATTTATCCTACGTGGCACT 59.899 41.667 16.72 5.47 35.26 4.40
505 571 4.377021 TCATCATTTATCCTACGTGGCAC 58.623 43.478 7.79 7.79 35.26 5.01
506 572 4.503123 CCTCATCATTTATCCTACGTGGCA 60.503 45.833 0.00 0.00 35.26 4.92
507 573 3.997021 CCTCATCATTTATCCTACGTGGC 59.003 47.826 0.00 0.00 35.26 5.01
508 574 4.991056 CACCTCATCATTTATCCTACGTGG 59.009 45.833 0.00 0.00 37.10 4.94
509 575 4.991056 CCACCTCATCATTTATCCTACGTG 59.009 45.833 0.00 0.00 0.00 4.49
510 576 4.899457 TCCACCTCATCATTTATCCTACGT 59.101 41.667 0.00 0.00 0.00 3.57
511 577 5.243954 TCTCCACCTCATCATTTATCCTACG 59.756 44.000 0.00 0.00 0.00 3.51
512 578 6.672266 TCTCCACCTCATCATTTATCCTAC 57.328 41.667 0.00 0.00 0.00 3.18
513 579 7.075797 TCTTCTCCACCTCATCATTTATCCTA 58.924 38.462 0.00 0.00 0.00 2.94
514 580 5.907662 TCTTCTCCACCTCATCATTTATCCT 59.092 40.000 0.00 0.00 0.00 3.24
515 581 6.179906 TCTTCTCCACCTCATCATTTATCC 57.820 41.667 0.00 0.00 0.00 2.59
516 582 7.989741 TCTTTCTTCTCCACCTCATCATTTATC 59.010 37.037 0.00 0.00 0.00 1.75
517 583 7.865820 TCTTTCTTCTCCACCTCATCATTTAT 58.134 34.615 0.00 0.00 0.00 1.40
518 584 7.257790 TCTTTCTTCTCCACCTCATCATTTA 57.742 36.000 0.00 0.00 0.00 1.40
519 585 6.131972 TCTTTCTTCTCCACCTCATCATTT 57.868 37.500 0.00 0.00 0.00 2.32
520 586 5.768980 TCTTTCTTCTCCACCTCATCATT 57.231 39.130 0.00 0.00 0.00 2.57
521 587 5.250313 AGTTCTTTCTTCTCCACCTCATCAT 59.750 40.000 0.00 0.00 0.00 2.45
522 588 4.594920 AGTTCTTTCTTCTCCACCTCATCA 59.405 41.667 0.00 0.00 0.00 3.07
523 589 5.159273 AGTTCTTTCTTCTCCACCTCATC 57.841 43.478 0.00 0.00 0.00 2.92
524 590 4.594920 TGAGTTCTTTCTTCTCCACCTCAT 59.405 41.667 0.00 0.00 0.00 2.90
525 591 3.967326 TGAGTTCTTTCTTCTCCACCTCA 59.033 43.478 0.00 0.00 0.00 3.86
526 592 4.608948 TGAGTTCTTTCTTCTCCACCTC 57.391 45.455 0.00 0.00 0.00 3.85
527 593 6.498651 TCTTATGAGTTCTTTCTTCTCCACCT 59.501 38.462 0.00 0.00 0.00 4.00
528 594 6.702329 TCTTATGAGTTCTTTCTTCTCCACC 58.298 40.000 0.00 0.00 0.00 4.61
529 595 8.608844 TTTCTTATGAGTTCTTTCTTCTCCAC 57.391 34.615 0.00 0.00 0.00 4.02
530 596 9.277783 CTTTTCTTATGAGTTCTTTCTTCTCCA 57.722 33.333 0.00 0.00 0.00 3.86
531 597 8.726068 CCTTTTCTTATGAGTTCTTTCTTCTCC 58.274 37.037 0.00 0.00 0.00 3.71
532 598 8.233868 GCCTTTTCTTATGAGTTCTTTCTTCTC 58.766 37.037 0.00 0.00 0.00 2.87
533 599 7.941790 AGCCTTTTCTTATGAGTTCTTTCTTCT 59.058 33.333 0.00 0.00 0.00 2.85
534 600 8.105097 AGCCTTTTCTTATGAGTTCTTTCTTC 57.895 34.615 0.00 0.00 0.00 2.87
535 601 8.355913 CAAGCCTTTTCTTATGAGTTCTTTCTT 58.644 33.333 0.00 0.00 0.00 2.52
536 602 7.503902 ACAAGCCTTTTCTTATGAGTTCTTTCT 59.496 33.333 0.00 0.00 0.00 2.52
537 603 7.652727 ACAAGCCTTTTCTTATGAGTTCTTTC 58.347 34.615 0.00 0.00 0.00 2.62
538 604 7.503902 AGACAAGCCTTTTCTTATGAGTTCTTT 59.496 33.333 0.00 0.00 0.00 2.52
539 605 7.001073 AGACAAGCCTTTTCTTATGAGTTCTT 58.999 34.615 0.00 0.00 0.00 2.52
540 606 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
541 607 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
542 608 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
543 609 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
544 610 7.446001 AAGAAGACAAGCCTTTTCTTATGAG 57.554 36.000 5.86 0.00 37.92 2.90
545 611 7.823745 AAAGAAGACAAGCCTTTTCTTATGA 57.176 32.000 5.86 0.00 38.54 2.15
587 653 9.709495 AGATAAATTGTGCTAAGAGATCATCTC 57.291 33.333 6.55 6.55 43.70 2.75
627 693 9.989869 GCCTTATCTTCAGTAACTAACAATTTC 57.010 33.333 0.00 0.00 0.00 2.17
628 694 9.740710 AGCCTTATCTTCAGTAACTAACAATTT 57.259 29.630 0.00 0.00 0.00 1.82
631 697 9.871238 CTTAGCCTTATCTTCAGTAACTAACAA 57.129 33.333 0.00 0.00 0.00 2.83
632 698 9.251440 TCTTAGCCTTATCTTCAGTAACTAACA 57.749 33.333 0.00 0.00 0.00 2.41
702 768 9.546428 AAAGCAGTTTTATTTTAAGTCTTGCAT 57.454 25.926 0.00 0.00 0.00 3.96
703 769 8.940768 AAAGCAGTTTTATTTTAAGTCTTGCA 57.059 26.923 0.00 0.00 0.00 4.08
719 785 9.638239 CATGTACAATGGTTAATAAAGCAGTTT 57.362 29.630 0.00 0.00 45.63 2.66
720 786 7.759433 GCATGTACAATGGTTAATAAAGCAGTT 59.241 33.333 0.00 0.00 45.63 3.16
721 787 7.257722 GCATGTACAATGGTTAATAAAGCAGT 58.742 34.615 0.00 0.00 45.63 4.40
722 788 6.697019 GGCATGTACAATGGTTAATAAAGCAG 59.303 38.462 0.00 0.00 45.63 4.24
723 789 6.406400 GGGCATGTACAATGGTTAATAAAGCA 60.406 38.462 0.00 0.00 46.41 3.91
724 790 5.983118 GGGCATGTACAATGGTTAATAAAGC 59.017 40.000 0.00 0.00 0.00 3.51
725 791 7.346751 AGGGCATGTACAATGGTTAATAAAG 57.653 36.000 0.00 0.00 0.00 1.85
726 792 7.726033 AAGGGCATGTACAATGGTTAATAAA 57.274 32.000 0.00 0.00 0.00 1.40
727 793 7.834681 TGTAAGGGCATGTACAATGGTTAATAA 59.165 33.333 0.00 0.00 0.00 1.40
728 794 7.347252 TGTAAGGGCATGTACAATGGTTAATA 58.653 34.615 0.00 0.00 0.00 0.98
729 795 6.191315 TGTAAGGGCATGTACAATGGTTAAT 58.809 36.000 0.00 0.00 0.00 1.40
730 796 5.571285 TGTAAGGGCATGTACAATGGTTAA 58.429 37.500 0.00 0.00 0.00 2.01
731 797 5.180810 TGTAAGGGCATGTACAATGGTTA 57.819 39.130 0.00 0.00 0.00 2.85
732 798 4.040936 TGTAAGGGCATGTACAATGGTT 57.959 40.909 0.00 0.00 0.00 3.67
733 799 3.730215 TGTAAGGGCATGTACAATGGT 57.270 42.857 0.00 0.00 0.00 3.55
734 800 4.644234 TGAATGTAAGGGCATGTACAATGG 59.356 41.667 0.00 0.00 34.08 3.16
735 801 5.125257 TGTGAATGTAAGGGCATGTACAATG 59.875 40.000 0.00 0.12 34.08 2.82
736 802 5.260424 TGTGAATGTAAGGGCATGTACAAT 58.740 37.500 0.00 0.00 34.08 2.71
737 803 4.657013 TGTGAATGTAAGGGCATGTACAA 58.343 39.130 0.00 0.00 34.08 2.41
738 804 4.293662 TGTGAATGTAAGGGCATGTACA 57.706 40.909 0.00 0.00 34.84 2.90
739 805 4.700213 ACTTGTGAATGTAAGGGCATGTAC 59.300 41.667 0.00 0.00 0.00 2.90
740 806 4.917385 ACTTGTGAATGTAAGGGCATGTA 58.083 39.130 0.00 0.00 0.00 2.29
741 807 3.766545 ACTTGTGAATGTAAGGGCATGT 58.233 40.909 0.00 0.00 0.00 3.21
742 808 4.789012 AACTTGTGAATGTAAGGGCATG 57.211 40.909 0.00 0.00 0.00 4.06
743 809 6.909550 TTTAACTTGTGAATGTAAGGGCAT 57.090 33.333 0.00 0.00 0.00 4.40
744 810 6.716934 TTTTAACTTGTGAATGTAAGGGCA 57.283 33.333 0.00 0.00 0.00 5.36
745 811 7.655732 ACAATTTTAACTTGTGAATGTAAGGGC 59.344 33.333 0.00 0.00 35.57 5.19
746 812 9.191995 GACAATTTTAACTTGTGAATGTAAGGG 57.808 33.333 5.43 0.00 36.98 3.95
747 813 9.743057 TGACAATTTTAACTTGTGAATGTAAGG 57.257 29.630 5.43 0.00 36.98 2.69
760 826 6.292811 CCGCAGCAAATTTGACAATTTTAACT 60.293 34.615 22.31 2.31 40.09 2.24
767 833 2.676076 GTCCGCAGCAAATTTGACAAT 58.324 42.857 22.31 1.30 0.00 2.71
792 868 4.918201 GCCGAATGAGCCGAGGGG 62.918 72.222 0.00 0.00 0.00 4.79
1083 2787 1.652563 GTCGGCTTTGTGTTGTCCC 59.347 57.895 0.00 0.00 0.00 4.46
1084 2788 1.098712 TGGTCGGCTTTGTGTTGTCC 61.099 55.000 0.00 0.00 0.00 4.02
1501 3205 1.984288 GCGGAGGGCCAGTAATTCCT 61.984 60.000 6.18 0.00 34.80 3.36
1905 3677 4.404073 ACTCCTTCATGCTACTAGTTCCTG 59.596 45.833 0.00 0.00 0.00 3.86
2231 4103 0.178068 ACACGGTATCTCCCACATGC 59.822 55.000 0.00 0.00 0.00 4.06
2256 4128 5.172934 AGCATTGCAAACCATCAATACAAG 58.827 37.500 11.91 0.00 32.22 3.16
2266 4138 2.752354 AGCGTATAAGCATTGCAAACCA 59.248 40.909 13.25 0.00 40.15 3.67
2357 4272 9.825109 TCAACGGTATGATTGTGAATCTATTAA 57.175 29.630 0.00 0.00 38.72 1.40
2415 4338 4.396166 AGCCTAAACAACAGTATGATGCAC 59.604 41.667 0.00 0.00 43.38 4.57
2429 4352 6.582636 CATAGGTGTTCTATCAGCCTAAACA 58.417 40.000 0.00 0.00 36.59 2.83
2436 4359 7.736447 ATAAAAGCATAGGTGTTCTATCAGC 57.264 36.000 0.00 0.00 36.59 4.26
2515 4438 7.004086 TGTGATTTCAGAAAGGTAGTCCAAAT 58.996 34.615 1.28 0.00 35.89 2.32
2545 4468 1.470979 GGCAGCCAATCATGAAGCTTG 60.471 52.381 2.10 7.81 31.93 4.01
2601 4524 1.946081 GCTCCTGGCTCTTCTTTATGC 59.054 52.381 0.00 0.00 38.06 3.14
2756 4682 9.300681 AGTTATGCCTAATATTGCACATACATT 57.699 29.630 2.81 0.00 40.88 2.71
2855 4781 9.638176 AGGAATTTACAATCTGATAGAAGCAAT 57.362 29.630 0.00 0.00 0.00 3.56
2873 4799 6.040729 CACAATACATGGCCATCAGGAATTTA 59.959 38.462 17.61 0.00 36.89 1.40
2889 4816 6.149474 GGAGTTGTAGCTGAAACACAATACAT 59.851 38.462 13.80 0.00 34.89 2.29
3146 5073 2.831526 TCACTAGCTATTGACAGGCACA 59.168 45.455 9.56 0.00 0.00 4.57
3219 5146 9.819267 AGATAAGTTATTAGCTACTGTTTCCAC 57.181 33.333 0.00 0.00 35.89 4.02
3315 5243 7.285401 GCTGATTGAGATGGGGAAAGTAAATAA 59.715 37.037 0.00 0.00 0.00 1.40
3334 5262 6.293462 CCTGACATGTCTGATATTGCTGATTG 60.293 42.308 28.47 7.99 0.00 2.67
3455 5387 3.385193 AACAGCCCAATAGCACAAAAC 57.615 42.857 0.00 0.00 34.23 2.43
3457 5389 4.339748 TCATAACAGCCCAATAGCACAAA 58.660 39.130 0.00 0.00 34.23 2.83
3472 5404 0.878416 GTTGCCGCTGGTTCATAACA 59.122 50.000 0.00 0.00 0.00 2.41
3696 5628 1.381867 TCATGGTCCCTGGTTGGATT 58.618 50.000 0.00 0.00 36.63 3.01
3855 5787 9.944663 GATAAACGGTGCTCAATTATCAAATTA 57.055 29.630 10.20 0.00 33.45 1.40
3919 5851 0.816825 AAGCTGCATCCACATAGCGG 60.817 55.000 1.02 0.00 40.92 5.52
4088 6020 3.806949 AACTTGGGCTTAATCCAGACA 57.193 42.857 0.00 0.00 35.48 3.41
4507 6470 8.097038 GCATATCCATAAACTAGAGTCCAATGA 58.903 37.037 0.00 0.00 0.00 2.57
4661 6665 7.251704 ACAGAAAAAGCAATACCTGATATCG 57.748 36.000 0.00 0.00 0.00 2.92
4898 6905 4.401837 CCTGGAGTAACTAACCCACTCTAC 59.598 50.000 0.00 0.00 38.95 2.59
4902 6909 2.158050 ACCCTGGAGTAACTAACCCACT 60.158 50.000 0.00 0.00 0.00 4.00
4912 6919 2.632996 CAGAGTGAACACCCTGGAGTAA 59.367 50.000 8.27 0.00 34.07 2.24
4961 6968 5.304778 ACCAAAATTTCCAACTAACATGCC 58.695 37.500 0.00 0.00 0.00 4.40
5063 7125 5.941948 ACGATTTAACCCAGTTTCTTCAG 57.058 39.130 0.00 0.00 0.00 3.02
5298 7361 6.535508 CGTGAGAGAGAATTAAAACCTAAGGG 59.464 42.308 0.00 0.00 38.88 3.95
5321 7384 0.391661 CCAGCTGCCTGAACATACGT 60.392 55.000 8.66 0.00 41.77 3.57
5486 7559 3.858247 ACGGTAACTTGGCATTCTACTC 58.142 45.455 0.00 0.00 0.00 2.59
5508 7581 5.416639 TGAGTTTACATGAGCATGAGCAAAT 59.583 36.000 16.70 5.78 45.49 2.32
5685 7758 7.849804 ATATATATGGAAGTCGAAACATGGC 57.150 36.000 0.00 0.00 0.00 4.40
5705 7778 7.416964 AAAGCCTTGCAACCATAACAATATA 57.583 32.000 0.00 0.00 0.00 0.86
5875 7950 7.235399 TCAGGTATAGGAATCATGTCATAGCAA 59.765 37.037 0.00 0.00 0.00 3.91
6061 8136 7.639113 TCTAGTTTTCCACTCAACATGTTTT 57.361 32.000 8.77 0.00 36.88 2.43
6154 8229 2.543848 TCGCTATTTTGATCGTCCATGC 59.456 45.455 0.00 0.00 0.00 4.06
6338 8413 4.505556 TCATTTTCGATCTCAGCTTCATCG 59.494 41.667 11.00 11.00 40.66 3.84
6392 8467 6.585322 CAGAAATTGTTCCTGCTTCTTCATTC 59.415 38.462 0.00 0.00 33.92 2.67
6530 8605 1.462616 TAGCTGGCATGCGTTCAAAT 58.537 45.000 12.44 0.00 38.13 2.32
6696 8771 2.757894 TTGCCCCCAGACAACTTTAA 57.242 45.000 0.00 0.00 0.00 1.52
7112 9194 9.071276 CAGGGCTTAATGAATTAGTCAATATGT 57.929 33.333 0.00 0.00 40.50 2.29
7176 9258 3.394674 TCTTAATGTGACTCGGCAACA 57.605 42.857 0.00 0.00 0.00 3.33
7227 9310 5.757099 AATACCAAGTTGTAGTACCTGCT 57.243 39.130 1.45 0.00 0.00 4.24
7232 9315 8.543862 AGTTGCTTAATACCAAGTTGTAGTAC 57.456 34.615 1.45 0.00 0.00 2.73
7394 9477 6.070251 TCAGCCAATACCATAAAAGAGAGACA 60.070 38.462 0.00 0.00 0.00 3.41
7445 9529 1.081892 CAAACCCAGATGCAGTCTCG 58.918 55.000 0.00 0.00 34.00 4.04
7514 9598 3.204526 CAAGTGCTCCTCAGATGAATCC 58.795 50.000 0.00 0.00 0.00 3.01
7534 9618 9.529325 CGACATACTCATAAAACTTAAGATCCA 57.471 33.333 10.09 0.00 0.00 3.41
7612 9696 8.985315 ATGAGAAGGACATAAATCAAAGCATA 57.015 30.769 0.00 0.00 0.00 3.14
7613 9697 7.893124 ATGAGAAGGACATAAATCAAAGCAT 57.107 32.000 0.00 0.00 0.00 3.79
7614 9698 7.707624 AATGAGAAGGACATAAATCAAAGCA 57.292 32.000 0.00 0.00 0.00 3.91
7686 9771 9.179909 CTTCTTACCAGAGAGAACTAGTGAATA 57.820 37.037 0.00 0.00 0.00 1.75
7690 9775 6.207810 ACACTTCTTACCAGAGAGAACTAGTG 59.792 42.308 0.00 0.00 36.38 2.74
7717 9802 4.890088 AGAATGTGCAATGCATGAAAACT 58.110 34.783 12.38 4.14 41.91 2.66
7790 9876 5.156355 GTGTGCAACTCCAAATATTGAGTG 58.844 41.667 8.72 5.58 38.04 3.51
7815 9901 7.288672 ACTCGACGTGAAAAATTCAAAGTATC 58.711 34.615 3.58 0.00 42.15 2.24
7821 9907 4.210537 GGAGACTCGACGTGAAAAATTCAA 59.789 41.667 3.58 0.00 42.15 2.69
7833 9919 1.402259 ACATAGCAAGGAGACTCGACG 59.598 52.381 0.00 0.00 42.68 5.12
7839 9925 6.402658 GCAACTAAGAAACATAGCAAGGAGAC 60.403 42.308 0.00 0.00 0.00 3.36
7842 9928 5.312895 TGCAACTAAGAAACATAGCAAGGA 58.687 37.500 0.00 0.00 0.00 3.36
7916 10002 8.407064 AGGTGTCTTAATCAGTTCTAGTAATCG 58.593 37.037 0.00 0.00 0.00 3.34
7952 10038 5.970317 AATGTGAGCAAGAATGACATCAA 57.030 34.783 0.00 0.00 0.00 2.57
7962 10048 6.541278 CCAAGATCAGAATAATGTGAGCAAGA 59.459 38.462 0.00 0.00 37.68 3.02
8245 10968 4.613437 AGACAACCTGGGATGCAAATAAT 58.387 39.130 0.00 0.00 0.00 1.28
8556 11280 7.360776 GCACAAAGGAAATCTGTTCAAAACAAA 60.361 33.333 0.00 0.00 41.61 2.83
8693 11417 2.626266 TCACCTTGAACTGCGTCTCTTA 59.374 45.455 0.00 0.00 0.00 2.10
8772 11496 3.684305 CGCAACAGTAAAGGACATGATCA 59.316 43.478 0.00 0.00 0.00 2.92
9417 14019 0.908198 GGGCTGTCTCTCCTGACAAT 59.092 55.000 0.00 0.00 44.98 2.71
9443 14045 0.179166 CCGTTCCATCAATTGCACCG 60.179 55.000 0.00 0.00 0.00 4.94
9523 14127 1.346068 ACCAGTCAAGAAGAGCAGTCC 59.654 52.381 0.00 0.00 0.00 3.85
9596 14201 1.728323 TCATGTGGTCTCTGGGAACA 58.272 50.000 0.00 0.00 39.67 3.18
9597 14202 2.237143 TGATCATGTGGTCTCTGGGAAC 59.763 50.000 0.00 0.00 0.00 3.62
9598 14203 2.237143 GTGATCATGTGGTCTCTGGGAA 59.763 50.000 0.00 0.00 0.00 3.97
9599 14204 1.833630 GTGATCATGTGGTCTCTGGGA 59.166 52.381 0.00 0.00 0.00 4.37
9600 14205 1.556451 TGTGATCATGTGGTCTCTGGG 59.444 52.381 0.00 0.00 0.00 4.45
9601 14206 3.268330 CTTGTGATCATGTGGTCTCTGG 58.732 50.000 0.00 0.00 0.00 3.86
9602 14207 2.676839 GCTTGTGATCATGTGGTCTCTG 59.323 50.000 0.00 0.00 0.00 3.35
9603 14208 2.570752 AGCTTGTGATCATGTGGTCTCT 59.429 45.455 0.00 0.00 0.00 3.10
9604 14209 2.983229 AGCTTGTGATCATGTGGTCTC 58.017 47.619 0.00 0.00 0.00 3.36
9605 14210 3.341823 GAAGCTTGTGATCATGTGGTCT 58.658 45.455 2.10 0.00 0.00 3.85
9606 14211 2.421424 GGAAGCTTGTGATCATGTGGTC 59.579 50.000 2.10 0.00 0.00 4.02
9607 14212 2.224843 TGGAAGCTTGTGATCATGTGGT 60.225 45.455 2.10 0.00 0.00 4.16
9608 14213 2.422479 CTGGAAGCTTGTGATCATGTGG 59.578 50.000 2.10 0.00 0.00 4.17
9609 14214 3.079578 ACTGGAAGCTTGTGATCATGTG 58.920 45.455 2.10 0.00 37.60 3.21
9610 14215 3.430042 ACTGGAAGCTTGTGATCATGT 57.570 42.857 2.10 0.00 37.60 3.21
9611 14216 3.504906 ACAACTGGAAGCTTGTGATCATG 59.495 43.478 2.10 0.00 37.01 3.07
9612 14217 3.759581 ACAACTGGAAGCTTGTGATCAT 58.240 40.909 2.10 0.00 37.01 2.45
9613 14218 3.213206 ACAACTGGAAGCTTGTGATCA 57.787 42.857 2.10 0.00 37.01 2.92
9614 14219 4.293415 CAAACAACTGGAAGCTTGTGATC 58.707 43.478 2.10 0.00 37.91 2.92
9615 14220 3.491447 GCAAACAACTGGAAGCTTGTGAT 60.491 43.478 2.10 0.00 37.91 3.06
9616 14221 2.159254 GCAAACAACTGGAAGCTTGTGA 60.159 45.455 2.10 0.00 37.91 3.58
9617 14222 2.195922 GCAAACAACTGGAAGCTTGTG 58.804 47.619 2.10 0.00 37.91 3.33
9618 14223 1.136891 GGCAAACAACTGGAAGCTTGT 59.863 47.619 2.10 0.00 38.96 3.16
9619 14224 1.136695 TGGCAAACAACTGGAAGCTTG 59.863 47.619 2.10 0.00 37.60 4.01
9620 14225 1.484038 TGGCAAACAACTGGAAGCTT 58.516 45.000 0.00 0.00 37.60 3.74
9621 14226 1.615392 GATGGCAAACAACTGGAAGCT 59.385 47.619 0.00 0.00 37.60 3.74
9622 14227 1.615392 AGATGGCAAACAACTGGAAGC 59.385 47.619 0.00 0.00 37.60 3.86
9623 14228 2.886523 TCAGATGGCAAACAACTGGAAG 59.113 45.455 0.00 0.00 46.56 3.46
9624 14229 2.622942 GTCAGATGGCAAACAACTGGAA 59.377 45.455 0.00 0.00 46.56 3.53
9625 14230 2.229792 GTCAGATGGCAAACAACTGGA 58.770 47.619 0.00 0.00 46.56 3.86
9626 14231 1.069022 CGTCAGATGGCAAACAACTGG 60.069 52.381 0.00 0.00 46.56 4.00
9628 14233 1.238439 CCGTCAGATGGCAAACAACT 58.762 50.000 0.00 0.00 31.60 3.16
9629 14234 0.240945 CCCGTCAGATGGCAAACAAC 59.759 55.000 2.62 0.00 0.00 3.32
9630 14235 0.109532 TCCCGTCAGATGGCAAACAA 59.890 50.000 2.62 0.00 0.00 2.83
9631 14236 0.109532 TTCCCGTCAGATGGCAAACA 59.890 50.000 2.62 0.00 0.00 2.83
9632 14237 0.804989 CTTCCCGTCAGATGGCAAAC 59.195 55.000 2.62 0.00 0.00 2.93
9633 14238 0.322456 CCTTCCCGTCAGATGGCAAA 60.322 55.000 2.62 0.00 0.00 3.68
9634 14239 1.198094 TCCTTCCCGTCAGATGGCAA 61.198 55.000 2.62 0.00 32.42 4.52
9635 14240 1.612146 TCCTTCCCGTCAGATGGCA 60.612 57.895 2.62 0.00 32.42 4.92
9636 14241 1.153349 GTCCTTCCCGTCAGATGGC 60.153 63.158 2.62 0.00 32.42 4.40
9637 14242 0.108138 GTGTCCTTCCCGTCAGATGG 60.108 60.000 0.93 0.93 33.40 3.51
9638 14243 0.898320 AGTGTCCTTCCCGTCAGATG 59.102 55.000 0.00 0.00 0.00 2.90
9639 14244 1.187087 GAGTGTCCTTCCCGTCAGAT 58.813 55.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.