Multiple sequence alignment - TraesCS1A01G159100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G159100 chr1A 100.000 2432 0 0 1 2432 284338272 284335841 0.000000 4492.0
1 TraesCS1A01G159100 chr1D 88.990 1653 97 44 658 2270 220427694 220426087 0.000000 1965.0
2 TraesCS1A01G159100 chr1D 88.121 564 42 11 1 544 220428322 220427764 0.000000 647.0
3 TraesCS1A01G159100 chr1B 91.005 1134 58 24 689 1801 315383056 315384166 0.000000 1489.0
4 TraesCS1A01G159100 chr2D 94.872 39 2 0 474 512 6497672 6497634 0.000007 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G159100 chr1A 284335841 284338272 2431 True 4492 4492 100.0000 1 2432 1 chr1A.!!$R1 2431
1 TraesCS1A01G159100 chr1D 220426087 220428322 2235 True 1306 1965 88.5555 1 2270 2 chr1D.!!$R1 2269
2 TraesCS1A01G159100 chr1B 315383056 315384166 1110 False 1489 1489 91.0050 689 1801 1 chr1B.!!$F1 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 669 0.247736 CTAGTCTCGTTTGCAGCCCT 59.752 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 2457 0.030638 CAAAACCACACGGCAGAAGG 59.969 55.0 0.0 0.0 34.57 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 9.981114 GAATTTAAGAAAAGTTCAGGGATTCAA 57.019 29.630 0.00 0.00 0.00 2.69
86 88 8.552083 AAGTTCAGGGATTCAAAAATAATTGC 57.448 30.769 0.00 0.00 0.00 3.56
92 94 7.925483 CAGGGATTCAAAAATAATTGCGGATTA 59.075 33.333 0.00 0.00 34.82 1.75
275 278 6.614694 AACAAACCTAAAGAAACAAACCCT 57.385 33.333 0.00 0.00 0.00 4.34
290 293 4.722279 ACAAACCCTAAAATTTTGGTGGGA 59.278 37.500 29.12 6.95 38.08 4.37
310 313 5.130705 GGATCCTAGAAGGTTCCCAAAAT 57.869 43.478 3.84 0.00 44.82 1.82
311 314 6.262056 GGATCCTAGAAGGTTCCCAAAATA 57.738 41.667 3.84 0.00 44.82 1.40
315 318 5.554350 TCCTAGAAGGTTCCCAAAATAGGTT 59.446 40.000 0.00 0.00 36.53 3.50
316 319 6.046286 TCCTAGAAGGTTCCCAAAATAGGTTT 59.954 38.462 0.00 0.00 36.53 3.27
328 331 6.547510 CCCAAAATAGGTTTAAGGAGAGATGG 59.452 42.308 0.00 0.00 0.00 3.51
361 377 1.254026 CTAGTGAAGGGACGTGGACA 58.746 55.000 0.00 0.00 0.00 4.02
368 384 1.909781 GGGACGTGGACACCCTGTA 60.910 63.158 0.00 0.00 40.39 2.74
390 406 6.764085 TGTACAAAGTAAACAGTGCTACATGT 59.236 34.615 2.69 2.69 0.00 3.21
391 407 6.060028 ACAAAGTAAACAGTGCTACATGTG 57.940 37.500 9.11 0.00 0.00 3.21
444 461 6.940867 AGGTAAGGGAAATAAGAAGTGTTGAC 59.059 38.462 0.00 0.00 0.00 3.18
451 468 7.355778 GGAAATAAGAAGTGTTGACAAGACAG 58.644 38.462 16.90 0.00 0.00 3.51
455 472 2.246719 AGTGTTGACAAGACAGAGCC 57.753 50.000 16.90 0.00 0.00 4.70
461 478 3.876274 TGACAAGACAGAGCCTGATAC 57.124 47.619 8.91 1.60 35.18 2.24
467 484 4.744795 AGACAGAGCCTGATACGATTTT 57.255 40.909 8.91 0.00 35.18 1.82
512 530 1.165907 CCAACACTGGCTCGCTCAAA 61.166 55.000 0.00 0.00 35.39 2.69
516 534 2.778299 ACACTGGCTCGCTCAAATTTA 58.222 42.857 0.00 0.00 0.00 1.40
518 536 3.568007 ACACTGGCTCGCTCAAATTTAAA 59.432 39.130 0.00 0.00 0.00 1.52
519 537 3.914364 CACTGGCTCGCTCAAATTTAAAC 59.086 43.478 0.00 0.00 0.00 2.01
521 539 2.095466 TGGCTCGCTCAAATTTAAACCG 60.095 45.455 0.00 0.00 0.00 4.44
610 630 8.919777 AGTATAAGTTTGCCTTTTTGTAGTCT 57.080 30.769 0.00 0.00 34.46 3.24
611 631 9.350951 AGTATAAGTTTGCCTTTTTGTAGTCTT 57.649 29.630 0.00 0.00 34.46 3.01
614 634 7.640597 AAGTTTGCCTTTTTGTAGTCTTAGT 57.359 32.000 0.00 0.00 0.00 2.24
615 635 8.741603 AAGTTTGCCTTTTTGTAGTCTTAGTA 57.258 30.769 0.00 0.00 0.00 1.82
616 636 8.919777 AGTTTGCCTTTTTGTAGTCTTAGTAT 57.080 30.769 0.00 0.00 0.00 2.12
629 649 9.314321 TGTAGTCTTAGTATAAATTTGCTGAGC 57.686 33.333 0.00 0.00 0.00 4.26
630 650 7.793927 AGTCTTAGTATAAATTTGCTGAGCC 57.206 36.000 0.23 0.00 0.00 4.70
631 651 7.569240 AGTCTTAGTATAAATTTGCTGAGCCT 58.431 34.615 0.23 0.00 0.00 4.58
632 652 8.705594 AGTCTTAGTATAAATTTGCTGAGCCTA 58.294 33.333 0.23 0.00 0.00 3.93
633 653 8.983724 GTCTTAGTATAAATTTGCTGAGCCTAG 58.016 37.037 0.23 0.00 0.00 3.02
634 654 8.705594 TCTTAGTATAAATTTGCTGAGCCTAGT 58.294 33.333 0.23 0.00 0.00 2.57
642 662 1.067565 TGCTGAGCCTAGTCTCGTTTG 60.068 52.381 0.23 0.00 35.90 2.93
648 668 0.741221 CCTAGTCTCGTTTGCAGCCC 60.741 60.000 0.00 0.00 0.00 5.19
649 669 0.247736 CTAGTCTCGTTTGCAGCCCT 59.752 55.000 0.00 0.00 0.00 5.19
650 670 1.476891 CTAGTCTCGTTTGCAGCCCTA 59.523 52.381 0.00 0.00 0.00 3.53
656 698 0.608035 CGTTTGCAGCCCTAGGGAAA 60.608 55.000 33.21 19.38 37.50 3.13
672 714 4.439860 AGGGAAAGGGAGATAAGAAGTGT 58.560 43.478 0.00 0.00 0.00 3.55
713 755 6.323996 TGATACGATTCCAGTCCAGTTCTATT 59.676 38.462 0.00 0.00 0.00 1.73
714 756 5.012328 ACGATTCCAGTCCAGTTCTATTC 57.988 43.478 0.00 0.00 0.00 1.75
715 757 4.712337 ACGATTCCAGTCCAGTTCTATTCT 59.288 41.667 0.00 0.00 0.00 2.40
716 758 5.892119 ACGATTCCAGTCCAGTTCTATTCTA 59.108 40.000 0.00 0.00 0.00 2.10
717 759 6.380274 ACGATTCCAGTCCAGTTCTATTCTAA 59.620 38.462 0.00 0.00 0.00 2.10
919 962 2.204029 TCGCCCCCAAACCCTACT 60.204 61.111 0.00 0.00 0.00 2.57
925 968 0.253207 CCCCAAACCCTACTCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
984 1034 4.516195 GCCGCCGGAGAAGGAGAC 62.516 72.222 7.68 0.00 32.51 3.36
1447 1497 0.030908 CTAGGTTCCTCCGCATCGTC 59.969 60.000 0.00 0.00 41.99 4.20
1448 1498 1.721664 TAGGTTCCTCCGCATCGTCG 61.722 60.000 0.00 0.00 41.99 5.12
1449 1499 2.181021 GTTCCTCCGCATCGTCGT 59.819 61.111 0.00 0.00 0.00 4.34
1464 1514 0.583917 GTCGTCGTCGTACCCCTATC 59.416 60.000 1.33 0.00 38.33 2.08
1465 1515 0.177836 TCGTCGTCGTACCCCTATCA 59.822 55.000 1.33 0.00 38.33 2.15
1467 1517 1.196354 CGTCGTCGTACCCCTATCATC 59.804 57.143 0.00 0.00 0.00 2.92
1469 1519 2.883386 GTCGTCGTACCCCTATCATCTT 59.117 50.000 0.00 0.00 0.00 2.40
1470 1520 3.317430 GTCGTCGTACCCCTATCATCTTT 59.683 47.826 0.00 0.00 0.00 2.52
1471 1521 4.516698 GTCGTCGTACCCCTATCATCTTTA 59.483 45.833 0.00 0.00 0.00 1.85
1472 1522 4.516698 TCGTCGTACCCCTATCATCTTTAC 59.483 45.833 0.00 0.00 0.00 2.01
1473 1523 4.276678 CGTCGTACCCCTATCATCTTTACA 59.723 45.833 0.00 0.00 0.00 2.41
1474 1524 5.048224 CGTCGTACCCCTATCATCTTTACAT 60.048 44.000 0.00 0.00 0.00 2.29
1475 1525 6.157211 GTCGTACCCCTATCATCTTTACATG 58.843 44.000 0.00 0.00 0.00 3.21
1476 1526 5.836898 TCGTACCCCTATCATCTTTACATGT 59.163 40.000 2.69 2.69 0.00 3.21
1478 1528 6.990349 CGTACCCCTATCATCTTTACATGTTT 59.010 38.462 2.30 0.00 0.00 2.83
1480 1530 9.841295 GTACCCCTATCATCTTTACATGTTTTA 57.159 33.333 2.30 0.00 0.00 1.52
1482 1532 9.936329 ACCCCTATCATCTTTACATGTTTTATT 57.064 29.630 2.30 0.00 0.00 1.40
1508 1558 4.067896 AGATCTGTTACTTGTGGCAAGTG 58.932 43.478 20.70 7.50 0.00 3.16
1540 1590 4.333690 ACTCAGAGCTTAAGTTCGAGGTA 58.666 43.478 27.34 11.19 33.77 3.08
1560 1610 4.814234 GGTATTTTGATCTGCGTATGGTGA 59.186 41.667 0.00 0.00 0.00 4.02
1612 1662 8.972262 TCTGAAGTGATTCGATATATTACTGC 57.028 34.615 0.00 0.00 0.00 4.40
1616 1666 8.978564 AAGTGATTCGATATATTACTGCTGAG 57.021 34.615 0.00 0.00 0.00 3.35
1717 1771 4.758674 ACTGTCATGATCTTCCAACACTTG 59.241 41.667 0.00 0.00 0.00 3.16
1719 1773 3.503363 GTCATGATCTTCCAACACTTGCA 59.497 43.478 0.00 0.00 0.00 4.08
1742 1808 0.535335 TGTAGGCCGATGTTCTGTCC 59.465 55.000 0.00 0.00 0.00 4.02
1750 1816 3.802685 GCCGATGTTCTGTCCTAACATAC 59.197 47.826 1.70 0.00 45.24 2.39
1776 1842 2.955614 ACGTTCAGTAGTGGTACATGC 58.044 47.619 0.00 0.00 44.52 4.06
1793 1859 4.012374 ACATGCCTTCTAGGTTTGTGATG 58.988 43.478 0.00 0.00 37.80 3.07
1818 1884 5.744819 GGTTTAGTGCGTTGTACAATTGTTT 59.255 36.000 17.78 0.00 0.00 2.83
1819 1885 6.253942 GGTTTAGTGCGTTGTACAATTGTTTT 59.746 34.615 17.78 0.00 0.00 2.43
1823 1894 5.031578 GTGCGTTGTACAATTGTTTTCTGA 58.968 37.500 17.78 0.00 0.00 3.27
1852 1923 9.144747 AGTGCTGCTATATAAAACTATCGATTG 57.855 33.333 1.71 3.78 0.00 2.67
1866 1937 6.603095 ACTATCGATTGTTGCTTTTGTTCTC 58.397 36.000 1.71 0.00 0.00 2.87
1871 1942 7.077605 TCGATTGTTGCTTTTGTTCTCATAAG 58.922 34.615 0.00 0.00 36.30 1.73
1885 1956 8.121305 TGTTCTCATAAGCACATATTTTGGTT 57.879 30.769 4.41 4.41 38.25 3.67
1887 1958 8.863049 GTTCTCATAAGCACATATTTTGGTTTG 58.137 33.333 4.32 4.09 36.19 2.93
1895 1974 6.591062 AGCACATATTTTGGTTTGTTATGCTG 59.409 34.615 0.00 0.00 0.00 4.41
1974 2053 9.582648 TTCTTTTAACTGGCTTTAGGAAATAGT 57.417 29.630 0.00 0.00 0.00 2.12
1975 2054 9.010029 TCTTTTAACTGGCTTTAGGAAATAGTG 57.990 33.333 0.00 0.00 0.00 2.74
1976 2055 8.700439 TTTTAACTGGCTTTAGGAAATAGTGT 57.300 30.769 0.00 0.00 0.00 3.55
1977 2056 7.916914 TTAACTGGCTTTAGGAAATAGTGTC 57.083 36.000 0.00 0.00 0.00 3.67
1978 2057 4.844884 ACTGGCTTTAGGAAATAGTGTCC 58.155 43.478 0.00 0.00 35.17 4.02
1979 2058 4.288626 ACTGGCTTTAGGAAATAGTGTCCA 59.711 41.667 0.00 0.00 37.65 4.02
1980 2059 5.222048 ACTGGCTTTAGGAAATAGTGTCCAA 60.222 40.000 0.00 0.00 37.65 3.53
1986 2065 3.939066 AGGAAATAGTGTCCAAGGAACG 58.061 45.455 0.00 0.00 37.65 3.95
1988 2067 3.683340 GGAAATAGTGTCCAAGGAACGAC 59.317 47.826 0.00 0.00 35.05 4.34
1999 2078 1.374758 GGAACGACTCCTGCACTGG 60.375 63.158 0.00 0.00 41.61 4.00
2011 2090 3.034635 CCTGCACTGGGAGTATAGTTCT 58.965 50.000 0.00 0.00 0.00 3.01
2020 2099 2.170607 GGAGTATAGTTCTGCCCTGCAA 59.829 50.000 0.00 0.00 38.41 4.08
2022 2101 3.812053 GAGTATAGTTCTGCCCTGCAATG 59.188 47.826 0.00 0.00 38.41 2.82
2026 2105 0.033781 GTTCTGCCCTGCAATGCAAA 59.966 50.000 9.92 0.00 38.41 3.68
2027 2106 0.033781 TTCTGCCCTGCAATGCAAAC 59.966 50.000 9.92 1.98 38.41 2.93
2032 2111 0.245539 CCCTGCAATGCAAACAGAGG 59.754 55.000 9.92 5.63 38.41 3.69
2033 2112 1.250328 CCTGCAATGCAAACAGAGGA 58.750 50.000 9.92 0.00 38.41 3.71
2035 2114 2.416836 CCTGCAATGCAAACAGAGGATG 60.417 50.000 9.92 0.00 38.41 3.51
2039 2118 2.226962 ATGCAAACAGAGGATGGCTT 57.773 45.000 0.00 0.00 0.00 4.35
2045 2124 1.958288 ACAGAGGATGGCTTGTAGGT 58.042 50.000 0.00 0.00 0.00 3.08
2054 2133 1.679898 GCTTGTAGGTCAGGCTGGT 59.320 57.895 15.73 2.34 44.21 4.00
2055 2134 0.902531 GCTTGTAGGTCAGGCTGGTA 59.097 55.000 15.73 1.30 44.21 3.25
2056 2135 1.486726 GCTTGTAGGTCAGGCTGGTAT 59.513 52.381 15.73 3.08 44.21 2.73
2059 2138 3.627395 TGTAGGTCAGGCTGGTATTTG 57.373 47.619 15.73 0.00 0.00 2.32
2062 2141 1.710809 AGGTCAGGCTGGTATTTGGTT 59.289 47.619 15.73 0.00 0.00 3.67
2063 2142 2.110011 AGGTCAGGCTGGTATTTGGTTT 59.890 45.455 15.73 0.00 0.00 3.27
2064 2143 3.332485 AGGTCAGGCTGGTATTTGGTTTA 59.668 43.478 15.73 0.00 0.00 2.01
2065 2144 4.083565 GGTCAGGCTGGTATTTGGTTTAA 58.916 43.478 15.73 0.00 0.00 1.52
2067 2146 4.082408 GTCAGGCTGGTATTTGGTTTAACC 60.082 45.833 15.73 7.27 39.22 2.85
2068 2147 3.086282 AGGCTGGTATTTGGTTTAACCG 58.914 45.455 9.77 0.00 42.58 4.44
2069 2148 3.083293 GGCTGGTATTTGGTTTAACCGA 58.917 45.455 9.77 4.62 42.58 4.69
2070 2149 3.506844 GGCTGGTATTTGGTTTAACCGAA 59.493 43.478 18.06 18.06 45.22 4.30
2071 2150 4.478699 GCTGGTATTTGGTTTAACCGAAC 58.521 43.478 18.11 8.12 44.02 3.95
2072 2151 4.714851 CTGGTATTTGGTTTAACCGAACG 58.285 43.478 18.11 2.75 44.02 3.95
2073 2152 4.384056 TGGTATTTGGTTTAACCGAACGA 58.616 39.130 18.11 7.56 44.02 3.85
2074 2153 4.451774 TGGTATTTGGTTTAACCGAACGAG 59.548 41.667 18.11 0.00 44.02 4.18
2075 2154 4.142838 GGTATTTGGTTTAACCGAACGAGG 60.143 45.833 18.11 0.00 44.02 4.63
2076 2155 3.479489 ATTTGGTTTAACCGAACGAGGT 58.521 40.909 18.11 0.43 44.02 3.85
2077 2156 1.868469 TGGTTTAACCGAACGAGGTG 58.132 50.000 9.77 0.00 45.21 4.00
2078 2157 1.138661 TGGTTTAACCGAACGAGGTGT 59.861 47.619 9.77 0.00 45.21 4.16
2079 2158 2.363680 TGGTTTAACCGAACGAGGTGTA 59.636 45.455 9.77 0.00 45.21 2.90
2080 2159 2.989166 GGTTTAACCGAACGAGGTGTAG 59.011 50.000 0.00 0.00 45.21 2.74
2081 2160 2.989166 GTTTAACCGAACGAGGTGTAGG 59.011 50.000 0.00 0.00 45.21 3.18
2082 2161 1.176527 TAACCGAACGAGGTGTAGGG 58.823 55.000 0.00 0.00 45.21 3.53
2083 2162 2.163601 AACCGAACGAGGTGTAGGGC 62.164 60.000 0.00 0.00 45.21 5.19
2084 2163 2.348888 CCGAACGAGGTGTAGGGCT 61.349 63.158 0.00 0.00 0.00 5.19
2107 2186 4.582701 TCTGCTGTTTATTTGGTTGTGG 57.417 40.909 0.00 0.00 0.00 4.17
2115 2194 2.818130 ATTTGGTTGTGGTCATGTGC 57.182 45.000 0.00 0.00 0.00 4.57
2117 2196 1.702182 TTGGTTGTGGTCATGTGCAT 58.298 45.000 0.00 0.00 0.00 3.96
2131 2214 6.033831 GGTCATGTGCATATTTTTCTTGTTCG 59.966 38.462 0.00 0.00 0.00 3.95
2149 2232 3.261981 TCGACTCCTTAGCAAAATCCC 57.738 47.619 0.00 0.00 0.00 3.85
2154 2237 4.026052 ACTCCTTAGCAAAATCCCCATTG 58.974 43.478 0.00 0.00 0.00 2.82
2156 2239 4.682563 TCCTTAGCAAAATCCCCATTGAA 58.317 39.130 0.00 0.00 0.00 2.69
2157 2240 4.466015 TCCTTAGCAAAATCCCCATTGAAC 59.534 41.667 0.00 0.00 0.00 3.18
2178 2266 3.131400 ACGGGTTTGCTTTGTTACATTGT 59.869 39.130 0.00 0.00 0.00 2.71
2179 2267 3.489047 CGGGTTTGCTTTGTTACATTGTG 59.511 43.478 0.00 0.00 0.00 3.33
2188 2276 3.902261 TGTTACATTGTGCTCTTGCTG 57.098 42.857 0.00 0.00 40.48 4.41
2196 2284 1.600636 TGCTCTTGCTGGTTTCCCG 60.601 57.895 0.00 0.00 40.48 5.14
2198 2286 1.172812 GCTCTTGCTGGTTTCCCGTT 61.173 55.000 0.00 0.00 36.03 4.44
2199 2287 0.593128 CTCTTGCTGGTTTCCCGTTG 59.407 55.000 0.00 0.00 0.00 4.10
2206 2294 0.741915 TGGTTTCCCGTTGCTGAAAC 59.258 50.000 6.58 6.58 46.02 2.78
2207 2295 1.029681 GGTTTCCCGTTGCTGAAACT 58.970 50.000 13.02 0.00 46.01 2.66
2208 2296 2.223745 GGTTTCCCGTTGCTGAAACTA 58.776 47.619 13.02 0.00 46.01 2.24
2209 2297 2.031420 GGTTTCCCGTTGCTGAAACTAC 60.031 50.000 13.02 0.00 46.01 2.73
2217 2305 4.177026 CGTTGCTGAAACTACTATCTGCT 58.823 43.478 0.00 0.00 40.09 4.24
2227 2315 4.437239 ACTACTATCTGCTGTGCATTGAC 58.563 43.478 0.00 0.00 38.13 3.18
2237 2325 1.804151 TGTGCATTGACTAGAAACCGC 59.196 47.619 0.00 0.00 0.00 5.68
2246 2334 3.006430 TGACTAGAAACCGCTGATGTTGA 59.994 43.478 0.00 0.00 0.00 3.18
2251 2339 5.339008 AGAAACCGCTGATGTTGATACTA 57.661 39.130 0.00 0.00 0.00 1.82
2256 2344 4.870426 ACCGCTGATGTTGATACTAAACTG 59.130 41.667 0.00 0.00 0.00 3.16
2270 2358 7.554835 TGATACTAAACTGTTGTGGTGTTTCTT 59.445 33.333 0.00 0.00 35.77 2.52
2271 2359 8.967664 ATACTAAACTGTTGTGGTGTTTCTTA 57.032 30.769 0.00 0.00 35.77 2.10
2272 2360 7.316544 ACTAAACTGTTGTGGTGTTTCTTAG 57.683 36.000 0.00 0.00 35.77 2.18
2273 2361 4.632538 AACTGTTGTGGTGTTTCTTAGC 57.367 40.909 0.00 0.00 0.00 3.09
2274 2362 2.949644 ACTGTTGTGGTGTTTCTTAGCC 59.050 45.455 0.00 0.00 0.00 3.93
2275 2363 3.214328 CTGTTGTGGTGTTTCTTAGCCT 58.786 45.455 0.00 0.00 0.00 4.58
2276 2364 3.626930 TGTTGTGGTGTTTCTTAGCCTT 58.373 40.909 0.00 0.00 0.00 4.35
2277 2365 3.380004 TGTTGTGGTGTTTCTTAGCCTTG 59.620 43.478 0.00 0.00 0.00 3.61
2278 2366 3.290948 TGTGGTGTTTCTTAGCCTTGT 57.709 42.857 0.00 0.00 0.00 3.16
2279 2367 2.948979 TGTGGTGTTTCTTAGCCTTGTG 59.051 45.455 0.00 0.00 0.00 3.33
2280 2368 3.211045 GTGGTGTTTCTTAGCCTTGTGA 58.789 45.455 0.00 0.00 0.00 3.58
2281 2369 3.821033 GTGGTGTTTCTTAGCCTTGTGAT 59.179 43.478 0.00 0.00 0.00 3.06
2282 2370 4.072131 TGGTGTTTCTTAGCCTTGTGATC 58.928 43.478 0.00 0.00 0.00 2.92
2283 2371 3.440522 GGTGTTTCTTAGCCTTGTGATCC 59.559 47.826 0.00 0.00 0.00 3.36
2284 2372 4.327680 GTGTTTCTTAGCCTTGTGATCCT 58.672 43.478 0.00 0.00 0.00 3.24
2285 2373 4.393371 GTGTTTCTTAGCCTTGTGATCCTC 59.607 45.833 0.00 0.00 0.00 3.71
2286 2374 3.914426 TTCTTAGCCTTGTGATCCTCC 57.086 47.619 0.00 0.00 0.00 4.30
2287 2375 2.119495 TCTTAGCCTTGTGATCCTCCC 58.881 52.381 0.00 0.00 0.00 4.30
2288 2376 2.122768 CTTAGCCTTGTGATCCTCCCT 58.877 52.381 0.00 0.00 0.00 4.20
2289 2377 1.500474 TAGCCTTGTGATCCTCCCTG 58.500 55.000 0.00 0.00 0.00 4.45
2290 2378 0.252881 AGCCTTGTGATCCTCCCTGA 60.253 55.000 0.00 0.00 0.00 3.86
2291 2379 0.842635 GCCTTGTGATCCTCCCTGAT 59.157 55.000 0.00 0.00 0.00 2.90
2292 2380 1.213926 GCCTTGTGATCCTCCCTGATT 59.786 52.381 0.00 0.00 0.00 2.57
2293 2381 2.747799 GCCTTGTGATCCTCCCTGATTC 60.748 54.545 0.00 0.00 0.00 2.52
2294 2382 2.507058 CCTTGTGATCCTCCCTGATTCA 59.493 50.000 0.00 0.00 0.00 2.57
2295 2383 3.433314 CCTTGTGATCCTCCCTGATTCAG 60.433 52.174 6.70 6.70 0.00 3.02
2304 2392 3.406682 CCTGATTCAGGTTTTGCGC 57.593 52.632 22.45 0.00 45.82 6.09
2305 2393 0.883833 CCTGATTCAGGTTTTGCGCT 59.116 50.000 22.45 0.00 45.82 5.92
2306 2394 1.270550 CCTGATTCAGGTTTTGCGCTT 59.729 47.619 22.45 0.00 45.82 4.68
2307 2395 2.288395 CCTGATTCAGGTTTTGCGCTTT 60.288 45.455 22.45 0.00 45.82 3.51
2308 2396 2.727798 CTGATTCAGGTTTTGCGCTTTG 59.272 45.455 9.73 0.00 0.00 2.77
2309 2397 2.360483 TGATTCAGGTTTTGCGCTTTGA 59.640 40.909 9.73 0.40 0.00 2.69
2310 2398 3.005684 TGATTCAGGTTTTGCGCTTTGAT 59.994 39.130 9.73 0.00 0.00 2.57
2311 2399 3.451141 TTCAGGTTTTGCGCTTTGATT 57.549 38.095 9.73 0.00 0.00 2.57
2312 2400 3.011949 TCAGGTTTTGCGCTTTGATTC 57.988 42.857 9.73 0.00 0.00 2.52
2313 2401 2.622942 TCAGGTTTTGCGCTTTGATTCT 59.377 40.909 9.73 0.00 0.00 2.40
2314 2402 2.727798 CAGGTTTTGCGCTTTGATTCTG 59.272 45.455 9.73 4.25 0.00 3.02
2315 2403 2.362077 AGGTTTTGCGCTTTGATTCTGT 59.638 40.909 9.73 0.00 0.00 3.41
2316 2404 2.472488 GGTTTTGCGCTTTGATTCTGTG 59.528 45.455 9.73 0.00 0.00 3.66
2317 2405 3.115554 GTTTTGCGCTTTGATTCTGTGT 58.884 40.909 9.73 0.00 0.00 3.72
2318 2406 3.435105 TTTGCGCTTTGATTCTGTGTT 57.565 38.095 9.73 0.00 0.00 3.32
2319 2407 3.435105 TTGCGCTTTGATTCTGTGTTT 57.565 38.095 9.73 0.00 0.00 2.83
2320 2408 2.730069 TGCGCTTTGATTCTGTGTTTG 58.270 42.857 9.73 0.00 0.00 2.93
2321 2409 2.098934 TGCGCTTTGATTCTGTGTTTGT 59.901 40.909 9.73 0.00 0.00 2.83
2322 2410 2.468777 GCGCTTTGATTCTGTGTTTGTG 59.531 45.455 0.00 0.00 0.00 3.33
2323 2411 3.044986 CGCTTTGATTCTGTGTTTGTGG 58.955 45.455 0.00 0.00 0.00 4.17
2324 2412 3.489059 CGCTTTGATTCTGTGTTTGTGGT 60.489 43.478 0.00 0.00 0.00 4.16
2325 2413 4.260990 CGCTTTGATTCTGTGTTTGTGGTA 60.261 41.667 0.00 0.00 0.00 3.25
2326 2414 5.587289 GCTTTGATTCTGTGTTTGTGGTAA 58.413 37.500 0.00 0.00 0.00 2.85
2327 2415 5.687285 GCTTTGATTCTGTGTTTGTGGTAAG 59.313 40.000 0.00 0.00 0.00 2.34
2328 2416 5.766150 TTGATTCTGTGTTTGTGGTAAGG 57.234 39.130 0.00 0.00 0.00 2.69
2329 2417 4.787551 TGATTCTGTGTTTGTGGTAAGGT 58.212 39.130 0.00 0.00 0.00 3.50
2330 2418 5.931294 TGATTCTGTGTTTGTGGTAAGGTA 58.069 37.500 0.00 0.00 0.00 3.08
2331 2419 6.539173 TGATTCTGTGTTTGTGGTAAGGTAT 58.461 36.000 0.00 0.00 0.00 2.73
2332 2420 6.429692 TGATTCTGTGTTTGTGGTAAGGTATG 59.570 38.462 0.00 0.00 0.00 2.39
2333 2421 5.554437 TCTGTGTTTGTGGTAAGGTATGA 57.446 39.130 0.00 0.00 0.00 2.15
2334 2422 6.121776 TCTGTGTTTGTGGTAAGGTATGAT 57.878 37.500 0.00 0.00 0.00 2.45
2335 2423 7.247456 TCTGTGTTTGTGGTAAGGTATGATA 57.753 36.000 0.00 0.00 0.00 2.15
2336 2424 7.101054 TCTGTGTTTGTGGTAAGGTATGATAC 58.899 38.462 0.00 0.00 0.00 2.24
2349 2437 3.875134 GGTATGATACCCTTTGTTGGTCG 59.125 47.826 10.58 0.00 43.18 4.79
2350 2438 3.713826 ATGATACCCTTTGTTGGTCGT 57.286 42.857 0.00 0.00 37.31 4.34
2351 2439 3.048337 TGATACCCTTTGTTGGTCGTC 57.952 47.619 0.00 0.00 37.31 4.20
2352 2440 2.635915 TGATACCCTTTGTTGGTCGTCT 59.364 45.455 0.00 0.00 37.31 4.18
2353 2441 2.536761 TACCCTTTGTTGGTCGTCTG 57.463 50.000 0.00 0.00 37.31 3.51
2354 2442 0.818040 ACCCTTTGTTGGTCGTCTGC 60.818 55.000 0.00 0.00 0.00 4.26
2355 2443 1.515521 CCCTTTGTTGGTCGTCTGCC 61.516 60.000 0.00 0.00 0.00 4.85
2356 2444 0.535102 CCTTTGTTGGTCGTCTGCCT 60.535 55.000 0.00 0.00 0.00 4.75
2357 2445 0.588252 CTTTGTTGGTCGTCTGCCTG 59.412 55.000 0.00 0.00 0.00 4.85
2358 2446 0.817634 TTTGTTGGTCGTCTGCCTGG 60.818 55.000 0.00 0.00 0.00 4.45
2359 2447 1.978455 TTGTTGGTCGTCTGCCTGGT 61.978 55.000 0.00 0.00 0.00 4.00
2360 2448 1.227853 GTTGGTCGTCTGCCTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
2361 2449 0.818040 GTTGGTCGTCTGCCTGGTTT 60.818 55.000 0.00 0.00 0.00 3.27
2362 2450 0.106918 TTGGTCGTCTGCCTGGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
2363 2451 0.534203 TGGTCGTCTGCCTGGTTTTC 60.534 55.000 0.00 0.00 0.00 2.29
2364 2452 1.235281 GGTCGTCTGCCTGGTTTTCC 61.235 60.000 0.00 0.00 41.14 3.13
2365 2453 0.250338 GTCGTCTGCCTGGTTTTCCT 60.250 55.000 0.00 0.00 41.38 3.36
2366 2454 0.250295 TCGTCTGCCTGGTTTTCCTG 60.250 55.000 0.00 0.00 41.38 3.86
2367 2455 1.856265 CGTCTGCCTGGTTTTCCTGC 61.856 60.000 0.00 0.00 41.38 4.85
2368 2456 0.538287 GTCTGCCTGGTTTTCCTGCT 60.538 55.000 0.00 0.00 41.38 4.24
2369 2457 0.250901 TCTGCCTGGTTTTCCTGCTC 60.251 55.000 0.00 0.00 41.38 4.26
2370 2458 1.228552 TGCCTGGTTTTCCTGCTCC 60.229 57.895 0.00 0.00 41.38 4.70
2371 2459 1.075659 GCCTGGTTTTCCTGCTCCT 59.924 57.895 0.00 0.00 41.38 3.69
2372 2460 0.540597 GCCTGGTTTTCCTGCTCCTT 60.541 55.000 0.00 0.00 41.38 3.36
2373 2461 1.539157 CCTGGTTTTCCTGCTCCTTC 58.461 55.000 0.00 0.00 41.38 3.46
2374 2462 1.074566 CCTGGTTTTCCTGCTCCTTCT 59.925 52.381 0.00 0.00 41.38 2.85
2375 2463 2.157738 CTGGTTTTCCTGCTCCTTCTG 58.842 52.381 0.00 0.00 41.38 3.02
2376 2464 0.884514 GGTTTTCCTGCTCCTTCTGC 59.115 55.000 0.00 0.00 36.94 4.26
2377 2465 0.884514 GTTTTCCTGCTCCTTCTGCC 59.115 55.000 0.00 0.00 0.00 4.85
2378 2466 0.606401 TTTTCCTGCTCCTTCTGCCG 60.606 55.000 0.00 0.00 0.00 5.69
2379 2467 1.768684 TTTCCTGCTCCTTCTGCCGT 61.769 55.000 0.00 0.00 0.00 5.68
2380 2468 2.435586 CCTGCTCCTTCTGCCGTG 60.436 66.667 0.00 0.00 0.00 4.94
2381 2469 2.345244 CTGCTCCTTCTGCCGTGT 59.655 61.111 0.00 0.00 0.00 4.49
2382 2470 2.031012 TGCTCCTTCTGCCGTGTG 59.969 61.111 0.00 0.00 0.00 3.82
2383 2471 2.743928 GCTCCTTCTGCCGTGTGG 60.744 66.667 0.00 0.00 38.77 4.17
2384 2472 2.743718 CTCCTTCTGCCGTGTGGT 59.256 61.111 0.00 0.00 37.67 4.16
2385 2473 1.071471 CTCCTTCTGCCGTGTGGTT 59.929 57.895 0.00 0.00 37.67 3.67
2386 2474 0.535102 CTCCTTCTGCCGTGTGGTTT 60.535 55.000 0.00 0.00 37.67 3.27
2387 2475 0.106918 TCCTTCTGCCGTGTGGTTTT 60.107 50.000 0.00 0.00 37.67 2.43
2388 2476 0.030638 CCTTCTGCCGTGTGGTTTTG 59.969 55.000 0.00 0.00 37.67 2.44
2389 2477 0.738389 CTTCTGCCGTGTGGTTTTGT 59.262 50.000 0.00 0.00 37.67 2.83
2390 2478 1.134175 CTTCTGCCGTGTGGTTTTGTT 59.866 47.619 0.00 0.00 37.67 2.83
2391 2479 0.453793 TCTGCCGTGTGGTTTTGTTG 59.546 50.000 0.00 0.00 37.67 3.33
2392 2480 0.453793 CTGCCGTGTGGTTTTGTTGA 59.546 50.000 0.00 0.00 37.67 3.18
2393 2481 0.453793 TGCCGTGTGGTTTTGTTGAG 59.546 50.000 0.00 0.00 37.67 3.02
2394 2482 0.454196 GCCGTGTGGTTTTGTTGAGT 59.546 50.000 0.00 0.00 37.67 3.41
2395 2483 1.533129 GCCGTGTGGTTTTGTTGAGTC 60.533 52.381 0.00 0.00 37.67 3.36
2396 2484 2.014128 CCGTGTGGTTTTGTTGAGTCT 58.986 47.619 0.00 0.00 0.00 3.24
2397 2485 2.031683 CCGTGTGGTTTTGTTGAGTCTC 59.968 50.000 0.00 0.00 0.00 3.36
2398 2486 2.675844 CGTGTGGTTTTGTTGAGTCTCA 59.324 45.455 0.00 0.00 0.00 3.27
2399 2487 3.485216 CGTGTGGTTTTGTTGAGTCTCAC 60.485 47.826 0.78 0.00 0.00 3.51
2400 2488 3.438781 GTGTGGTTTTGTTGAGTCTCACA 59.561 43.478 0.78 1.67 0.00 3.58
2401 2489 3.438781 TGTGGTTTTGTTGAGTCTCACAC 59.561 43.478 0.78 6.32 0.00 3.82
2402 2490 2.675844 TGGTTTTGTTGAGTCTCACACG 59.324 45.455 0.78 0.00 0.00 4.49
2403 2491 2.933906 GGTTTTGTTGAGTCTCACACGA 59.066 45.455 0.78 1.99 0.00 4.35
2404 2492 3.560068 GGTTTTGTTGAGTCTCACACGAT 59.440 43.478 0.78 0.00 0.00 3.73
2405 2493 4.748102 GGTTTTGTTGAGTCTCACACGATA 59.252 41.667 0.78 0.00 0.00 2.92
2406 2494 5.333111 GGTTTTGTTGAGTCTCACACGATAC 60.333 44.000 0.78 8.97 0.00 2.24
2407 2495 3.570926 TGTTGAGTCTCACACGATACC 57.429 47.619 0.78 0.00 0.00 2.73
2408 2496 2.230508 TGTTGAGTCTCACACGATACCC 59.769 50.000 0.78 0.00 0.00 3.69
2409 2497 2.492484 GTTGAGTCTCACACGATACCCT 59.508 50.000 0.78 0.00 0.00 4.34
2410 2498 2.803956 TGAGTCTCACACGATACCCTT 58.196 47.619 0.00 0.00 0.00 3.95
2411 2499 3.162666 TGAGTCTCACACGATACCCTTT 58.837 45.455 0.00 0.00 0.00 3.11
2412 2500 3.056821 TGAGTCTCACACGATACCCTTTG 60.057 47.826 0.00 0.00 0.00 2.77
2413 2501 2.897969 AGTCTCACACGATACCCTTTGT 59.102 45.455 0.00 0.00 0.00 2.83
2414 2502 3.323979 AGTCTCACACGATACCCTTTGTT 59.676 43.478 0.00 0.00 0.00 2.83
2415 2503 3.432252 GTCTCACACGATACCCTTTGTTG 59.568 47.826 0.00 0.00 0.00 3.33
2416 2504 2.742053 CTCACACGATACCCTTTGTTGG 59.258 50.000 0.00 0.00 0.00 3.77
2417 2505 2.105134 TCACACGATACCCTTTGTTGGT 59.895 45.455 0.00 0.00 39.97 3.67
2418 2506 2.482721 CACACGATACCCTTTGTTGGTC 59.517 50.000 0.00 0.00 37.31 4.02
2419 2507 1.730064 CACGATACCCTTTGTTGGTCG 59.270 52.381 0.00 0.00 37.31 4.79
2420 2508 1.345415 ACGATACCCTTTGTTGGTCGT 59.655 47.619 0.00 0.00 37.31 4.34
2421 2509 1.997606 CGATACCCTTTGTTGGTCGTC 59.002 52.381 0.00 0.00 37.31 4.20
2422 2510 2.353406 CGATACCCTTTGTTGGTCGTCT 60.353 50.000 0.00 0.00 37.31 4.18
2423 2511 2.536761 TACCCTTTGTTGGTCGTCTG 57.463 50.000 0.00 0.00 37.31 3.51
2424 2512 0.818040 ACCCTTTGTTGGTCGTCTGC 60.818 55.000 0.00 0.00 0.00 4.26
2425 2513 1.515521 CCCTTTGTTGGTCGTCTGCC 61.516 60.000 0.00 0.00 0.00 4.85
2426 2514 1.515521 CCTTTGTTGGTCGTCTGCCC 61.516 60.000 0.00 0.00 0.00 5.36
2427 2515 1.841663 CTTTGTTGGTCGTCTGCCCG 61.842 60.000 0.00 0.00 0.00 6.13
2428 2516 3.818121 TTGTTGGTCGTCTGCCCGG 62.818 63.158 0.00 0.00 0.00 5.73
2429 2517 4.309950 GTTGGTCGTCTGCCCGGT 62.310 66.667 0.00 0.00 0.00 5.28
2430 2518 3.552384 TTGGTCGTCTGCCCGGTT 61.552 61.111 0.00 0.00 0.00 4.44
2431 2519 3.109592 TTGGTCGTCTGCCCGGTTT 62.110 57.895 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 8.633561 CCTGAACTTTTCTTAAATTCAAGGACT 58.366 33.333 0.00 0.00 0.00 3.85
50 52 9.981114 TTGAATCCCTGAACTTTTCTTAAATTC 57.019 29.630 0.00 0.00 0.00 2.17
61 63 7.331687 CGCAATTATTTTTGAATCCCTGAACTT 59.668 33.333 0.00 0.00 0.00 2.66
67 69 5.930837 TCCGCAATTATTTTTGAATCCCT 57.069 34.783 0.00 0.00 0.00 4.20
198 201 8.532341 GGTTTTCTCTTTTTCGTTCAATCTTTC 58.468 33.333 0.00 0.00 0.00 2.62
202 205 7.749539 TTGGTTTTCTCTTTTTCGTTCAATC 57.250 32.000 0.00 0.00 0.00 2.67
233 236 3.068873 TGTTTGGGAATGGGTTTTTCTCG 59.931 43.478 0.00 0.00 0.00 4.04
243 246 5.799827 TCTTTAGGTTTGTTTGGGAATGG 57.200 39.130 0.00 0.00 0.00 3.16
245 248 7.189079 TGTTTCTTTAGGTTTGTTTGGGAAT 57.811 32.000 0.00 0.00 0.00 3.01
275 278 6.895204 CCTTCTAGGATCCCACCAAAATTTTA 59.105 38.462 8.55 0.00 37.67 1.52
305 308 6.603201 TGCCATCTCTCCTTAAACCTATTTTG 59.397 38.462 0.00 0.00 0.00 2.44
310 313 4.081087 GTGTGCCATCTCTCCTTAAACCTA 60.081 45.833 0.00 0.00 0.00 3.08
311 314 2.912956 TGTGCCATCTCTCCTTAAACCT 59.087 45.455 0.00 0.00 0.00 3.50
315 318 5.755409 TTAAGTGTGCCATCTCTCCTTAA 57.245 39.130 0.00 0.00 0.00 1.85
316 319 5.755409 TTTAAGTGTGCCATCTCTCCTTA 57.245 39.130 0.00 0.00 0.00 2.69
328 331 5.278315 CCCTTCACTAGGTTTTTAAGTGTGC 60.278 44.000 0.00 0.00 43.07 4.57
361 377 3.881089 GCACTGTTTACTTTGTACAGGGT 59.119 43.478 0.00 1.91 43.53 4.34
368 384 5.505654 GCACATGTAGCACTGTTTACTTTGT 60.506 40.000 13.27 3.35 0.00 2.83
390 406 3.737663 GCAAATGCATTTCCTATTCGGCA 60.738 43.478 21.70 0.00 41.59 5.69
391 407 2.796593 GCAAATGCATTTCCTATTCGGC 59.203 45.455 21.70 15.07 41.59 5.54
444 461 3.724508 ATCGTATCAGGCTCTGTCTTG 57.275 47.619 2.68 0.00 32.61 3.02
451 468 6.273825 TCTGAGTTAAAATCGTATCAGGCTC 58.726 40.000 0.00 0.00 35.87 4.70
461 478 9.107367 GATCAGTTTGTTTCTGAGTTAAAATCG 57.893 33.333 0.00 0.00 43.66 3.34
467 484 7.041780 GCTCAAGATCAGTTTGTTTCTGAGTTA 60.042 37.037 0.00 0.00 43.66 2.24
584 604 9.350951 AGACTACAAAAAGGCAAACTTATACTT 57.649 29.630 0.00 0.00 38.85 2.24
603 623 9.314321 GCTCAGCAAATTTATACTAAGACTACA 57.686 33.333 0.00 0.00 0.00 2.74
604 624 8.766151 GGCTCAGCAAATTTATACTAAGACTAC 58.234 37.037 0.00 0.00 0.00 2.73
605 625 8.705594 AGGCTCAGCAAATTTATACTAAGACTA 58.294 33.333 0.00 0.00 0.00 2.59
606 626 7.569240 AGGCTCAGCAAATTTATACTAAGACT 58.431 34.615 0.00 0.00 0.00 3.24
607 627 7.793927 AGGCTCAGCAAATTTATACTAAGAC 57.206 36.000 0.00 0.00 0.00 3.01
608 628 8.705594 ACTAGGCTCAGCAAATTTATACTAAGA 58.294 33.333 0.00 0.00 0.00 2.10
609 629 8.894768 ACTAGGCTCAGCAAATTTATACTAAG 57.105 34.615 0.00 0.00 0.00 2.18
610 630 8.705594 AGACTAGGCTCAGCAAATTTATACTAA 58.294 33.333 0.00 0.00 0.00 2.24
611 631 8.251383 AGACTAGGCTCAGCAAATTTATACTA 57.749 34.615 0.00 0.00 0.00 1.82
612 632 7.130681 AGACTAGGCTCAGCAAATTTATACT 57.869 36.000 0.00 0.00 0.00 2.12
613 633 6.144724 CGAGACTAGGCTCAGCAAATTTATAC 59.855 42.308 25.31 0.00 34.56 1.47
614 634 6.183360 ACGAGACTAGGCTCAGCAAATTTATA 60.183 38.462 25.31 0.00 34.56 0.98
615 635 5.053145 CGAGACTAGGCTCAGCAAATTTAT 58.947 41.667 25.31 0.00 34.56 1.40
616 636 4.081642 ACGAGACTAGGCTCAGCAAATTTA 60.082 41.667 25.31 0.00 34.56 1.40
617 637 3.265791 CGAGACTAGGCTCAGCAAATTT 58.734 45.455 25.31 0.00 34.56 1.82
618 638 2.234908 ACGAGACTAGGCTCAGCAAATT 59.765 45.455 25.31 0.00 34.56 1.82
619 639 1.827969 ACGAGACTAGGCTCAGCAAAT 59.172 47.619 25.31 0.26 34.56 2.32
620 640 1.257743 ACGAGACTAGGCTCAGCAAA 58.742 50.000 25.31 0.00 34.56 3.68
621 641 1.257743 AACGAGACTAGGCTCAGCAA 58.742 50.000 25.31 0.00 34.56 3.91
622 642 1.067565 CAAACGAGACTAGGCTCAGCA 60.068 52.381 25.31 0.00 34.56 4.41
623 643 1.634702 CAAACGAGACTAGGCTCAGC 58.365 55.000 25.31 0.00 34.56 4.26
624 644 1.067565 TGCAAACGAGACTAGGCTCAG 60.068 52.381 25.31 18.90 34.56 3.35
625 645 0.966179 TGCAAACGAGACTAGGCTCA 59.034 50.000 25.31 2.06 34.56 4.26
626 646 1.634702 CTGCAAACGAGACTAGGCTC 58.365 55.000 16.31 16.31 0.00 4.70
627 647 0.390472 GCTGCAAACGAGACTAGGCT 60.390 55.000 0.00 0.00 0.00 4.58
628 648 1.362406 GGCTGCAAACGAGACTAGGC 61.362 60.000 0.50 0.00 0.00 3.93
629 649 0.741221 GGGCTGCAAACGAGACTAGG 60.741 60.000 0.50 0.00 0.00 3.02
630 650 0.247736 AGGGCTGCAAACGAGACTAG 59.752 55.000 0.50 0.00 0.00 2.57
631 651 1.476891 CTAGGGCTGCAAACGAGACTA 59.523 52.381 0.50 0.00 0.00 2.59
632 652 0.247736 CTAGGGCTGCAAACGAGACT 59.752 55.000 0.50 0.00 0.00 3.24
633 653 0.741221 CCTAGGGCTGCAAACGAGAC 60.741 60.000 0.00 0.00 0.00 3.36
634 654 1.596934 CCTAGGGCTGCAAACGAGA 59.403 57.895 0.00 0.00 0.00 4.04
648 668 5.663556 ACACTTCTTATCTCCCTTTCCCTAG 59.336 44.000 0.00 0.00 0.00 3.02
649 669 5.600749 ACACTTCTTATCTCCCTTTCCCTA 58.399 41.667 0.00 0.00 0.00 3.53
650 670 4.439860 ACACTTCTTATCTCCCTTTCCCT 58.560 43.478 0.00 0.00 0.00 4.20
656 698 7.400339 TGTCTAATCAACACTTCTTATCTCCCT 59.600 37.037 0.00 0.00 0.00 4.20
661 703 7.254932 GGCCATGTCTAATCAACACTTCTTATC 60.255 40.741 0.00 0.00 0.00 1.75
672 714 4.343814 TCGTATCAGGCCATGTCTAATCAA 59.656 41.667 5.01 0.00 0.00 2.57
713 755 7.073725 AGGTTGATTTAGGCCCATTAGATTAGA 59.926 37.037 0.00 0.00 0.00 2.10
714 756 7.234355 AGGTTGATTTAGGCCCATTAGATTAG 58.766 38.462 0.00 0.00 0.00 1.73
715 757 7.161715 AGGTTGATTTAGGCCCATTAGATTA 57.838 36.000 0.00 0.00 0.00 1.75
716 758 6.030727 AGGTTGATTTAGGCCCATTAGATT 57.969 37.500 0.00 0.00 0.00 2.40
717 759 5.669798 AGGTTGATTTAGGCCCATTAGAT 57.330 39.130 0.00 0.00 0.00 1.98
783 826 2.095059 GCACAAGATCGTGATTGCCTTT 60.095 45.455 15.90 0.00 39.34 3.11
1422 1472 3.145551 GGAGGAACCTAGGCGCGA 61.146 66.667 12.10 0.00 35.41 5.87
1447 1497 1.196354 GATGATAGGGGTACGACGACG 59.804 57.143 5.58 5.58 45.75 5.12
1448 1498 2.502295 AGATGATAGGGGTACGACGAC 58.498 52.381 0.00 0.00 0.00 4.34
1449 1499 2.945080 AGATGATAGGGGTACGACGA 57.055 50.000 0.00 0.00 0.00 4.20
1480 1530 9.113838 CTTGCCACAAGTAACAGATCTAATAAT 57.886 33.333 0.00 0.00 0.00 1.28
1481 1531 8.100791 ACTTGCCACAAGTAACAGATCTAATAA 58.899 33.333 11.10 0.00 0.00 1.40
1482 1532 7.549134 CACTTGCCACAAGTAACAGATCTAATA 59.451 37.037 12.30 0.00 0.00 0.98
1483 1533 6.372659 CACTTGCCACAAGTAACAGATCTAAT 59.627 38.462 12.30 0.00 0.00 1.73
1508 1558 7.195839 ACTTAAGCTCTGAGTTCAAAACATC 57.804 36.000 6.53 0.00 0.00 3.06
1540 1590 4.699735 TGTTCACCATACGCAGATCAAAAT 59.300 37.500 0.00 0.00 0.00 1.82
1612 1662 4.153117 ACGAGCATAAACTTCAAAGCTCAG 59.847 41.667 12.03 7.50 46.45 3.35
1616 1666 5.928153 AGTAACGAGCATAAACTTCAAAGC 58.072 37.500 0.00 0.00 0.00 3.51
1693 1747 5.745312 AGTGTTGGAAGATCATGACAGTA 57.255 39.130 0.00 0.00 0.00 2.74
1703 1757 6.319658 CCTACATATTGCAAGTGTTGGAAGAT 59.680 38.462 28.18 4.65 44.23 2.40
1706 1760 4.157656 GCCTACATATTGCAAGTGTTGGAA 59.842 41.667 32.38 15.30 45.09 3.53
1717 1771 3.187227 CAGAACATCGGCCTACATATTGC 59.813 47.826 0.00 0.00 0.00 3.56
1719 1773 4.503296 GGACAGAACATCGGCCTACATATT 60.503 45.833 0.00 0.00 0.00 1.28
1742 1808 8.804743 CACTACTGAACGTTATTGGTATGTTAG 58.195 37.037 0.00 0.00 0.00 2.34
1750 1816 5.472148 TGTACCACTACTGAACGTTATTGG 58.528 41.667 0.00 1.97 0.00 3.16
1776 1842 3.721087 ACCCATCACAAACCTAGAAGG 57.279 47.619 0.00 0.00 42.49 3.46
1793 1859 4.223659 CAATTGTACAACGCACTAAACCC 58.776 43.478 11.22 0.00 0.00 4.11
1844 1915 6.552859 TGAGAACAAAAGCAACAATCGATA 57.447 33.333 0.00 0.00 0.00 2.92
1845 1916 5.437289 TGAGAACAAAAGCAACAATCGAT 57.563 34.783 0.00 0.00 0.00 3.59
1847 1918 6.183359 GCTTATGAGAACAAAAGCAACAATCG 60.183 38.462 1.27 0.00 43.00 3.34
1859 1930 8.121305 ACCAAAATATGTGCTTATGAGAACAA 57.879 30.769 1.80 0.00 44.60 2.83
1860 1931 7.701539 ACCAAAATATGTGCTTATGAGAACA 57.298 32.000 0.00 0.00 45.50 3.18
1861 1932 8.863049 CAAACCAAAATATGTGCTTATGAGAAC 58.137 33.333 0.00 0.00 31.45 3.01
1871 1942 6.368516 ACAGCATAACAAACCAAAATATGTGC 59.631 34.615 0.00 0.00 0.00 4.57
1885 1956 6.934083 TGAAAGACACTATCACAGCATAACAA 59.066 34.615 0.00 0.00 0.00 2.83
1887 1958 6.968131 TGAAAGACACTATCACAGCATAAC 57.032 37.500 0.00 0.00 0.00 1.89
1936 2015 9.569122 AGCCAGTTAAAAGAAACTCATAACTAA 57.431 29.630 0.00 0.00 37.61 2.24
1954 2033 6.013206 TGGACACTATTTCCTAAAGCCAGTTA 60.013 38.462 0.00 0.00 33.84 2.24
1965 2044 3.581332 TCGTTCCTTGGACACTATTTCCT 59.419 43.478 0.00 0.00 33.84 3.36
1972 2051 0.680061 GGAGTCGTTCCTTGGACACT 59.320 55.000 2.12 0.00 43.16 3.55
1973 2052 3.212450 GGAGTCGTTCCTTGGACAC 57.788 57.895 2.12 0.00 43.16 3.67
1999 2078 1.762957 TGCAGGGCAGAACTATACTCC 59.237 52.381 0.00 0.00 33.32 3.85
2011 2090 1.114119 TCTGTTTGCATTGCAGGGCA 61.114 50.000 11.76 9.96 40.61 5.36
2020 2099 1.822990 CAAGCCATCCTCTGTTTGCAT 59.177 47.619 0.00 0.00 0.00 3.96
2022 2101 1.251251 ACAAGCCATCCTCTGTTTGC 58.749 50.000 0.00 0.00 0.00 3.68
2026 2105 1.834263 GACCTACAAGCCATCCTCTGT 59.166 52.381 0.00 0.00 0.00 3.41
2027 2106 1.833630 TGACCTACAAGCCATCCTCTG 59.166 52.381 0.00 0.00 0.00 3.35
2032 2111 0.543749 AGCCTGACCTACAAGCCATC 59.456 55.000 0.00 0.00 36.69 3.51
2033 2112 0.254178 CAGCCTGACCTACAAGCCAT 59.746 55.000 0.00 0.00 36.69 4.40
2035 2114 1.078143 CCAGCCTGACCTACAAGCC 60.078 63.158 0.00 0.00 36.69 4.35
2039 2118 2.238646 CCAAATACCAGCCTGACCTACA 59.761 50.000 0.00 0.00 0.00 2.74
2045 2124 4.083565 GGTTAAACCAAATACCAGCCTGA 58.916 43.478 0.00 0.00 38.42 3.86
2054 2133 4.451774 CACCTCGTTCGGTTAAACCAAATA 59.548 41.667 0.00 0.00 38.47 1.40
2055 2134 3.251487 CACCTCGTTCGGTTAAACCAAAT 59.749 43.478 0.00 0.00 38.47 2.32
2056 2135 2.613133 CACCTCGTTCGGTTAAACCAAA 59.387 45.455 0.00 0.00 38.47 3.28
2059 2138 1.869774 ACACCTCGTTCGGTTAAACC 58.130 50.000 0.00 0.00 34.29 3.27
2062 2141 1.545582 CCCTACACCTCGTTCGGTTAA 59.454 52.381 0.00 0.00 34.29 2.01
2063 2142 1.176527 CCCTACACCTCGTTCGGTTA 58.823 55.000 0.00 0.00 34.29 2.85
2064 2143 1.969862 CCCTACACCTCGTTCGGTT 59.030 57.895 0.00 0.00 34.29 4.44
2065 2144 2.643232 GCCCTACACCTCGTTCGGT 61.643 63.158 0.00 0.00 37.93 4.69
2067 2146 0.037605 AAAGCCCTACACCTCGTTCG 60.038 55.000 0.00 0.00 0.00 3.95
2068 2147 1.275573 AGAAAGCCCTACACCTCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
2069 2148 1.002087 CAGAAAGCCCTACACCTCGTT 59.998 52.381 0.00 0.00 0.00 3.85
2070 2149 0.608640 CAGAAAGCCCTACACCTCGT 59.391 55.000 0.00 0.00 0.00 4.18
2071 2150 0.741221 GCAGAAAGCCCTACACCTCG 60.741 60.000 0.00 0.00 37.23 4.63
2072 2151 3.160872 GCAGAAAGCCCTACACCTC 57.839 57.895 0.00 0.00 37.23 3.85
2082 2161 5.049828 ACAACCAAATAAACAGCAGAAAGC 58.950 37.500 0.00 0.00 46.19 3.51
2083 2162 5.463061 CCACAACCAAATAAACAGCAGAAAG 59.537 40.000 0.00 0.00 0.00 2.62
2084 2163 5.105146 ACCACAACCAAATAAACAGCAGAAA 60.105 36.000 0.00 0.00 0.00 2.52
2107 2186 6.801377 TCGAACAAGAAAAATATGCACATGAC 59.199 34.615 0.00 0.00 0.00 3.06
2115 2194 7.905493 GCTAAGGAGTCGAACAAGAAAAATATG 59.095 37.037 0.00 0.00 0.00 1.78
2117 2196 6.932400 TGCTAAGGAGTCGAACAAGAAAAATA 59.068 34.615 0.00 0.00 0.00 1.40
2131 2214 3.366052 TGGGGATTTTGCTAAGGAGTC 57.634 47.619 0.00 0.00 0.00 3.36
2149 2232 2.134346 CAAAGCAAACCCGTTCAATGG 58.866 47.619 0.00 0.00 0.00 3.16
2154 2237 3.423996 TGTAACAAAGCAAACCCGTTC 57.576 42.857 0.00 0.00 0.00 3.95
2156 2239 3.131400 ACAATGTAACAAAGCAAACCCGT 59.869 39.130 0.00 0.00 0.00 5.28
2157 2240 3.489047 CACAATGTAACAAAGCAAACCCG 59.511 43.478 0.00 0.00 0.00 5.28
2196 2284 4.932200 ACAGCAGATAGTAGTTTCAGCAAC 59.068 41.667 7.85 0.00 35.32 4.17
2198 2286 4.498241 CACAGCAGATAGTAGTTTCAGCA 58.502 43.478 7.85 0.00 0.00 4.41
2199 2287 3.308323 GCACAGCAGATAGTAGTTTCAGC 59.692 47.826 0.00 0.00 0.00 4.26
2206 2294 4.691175 AGTCAATGCACAGCAGATAGTAG 58.309 43.478 0.00 0.00 43.65 2.57
2207 2295 4.743057 AGTCAATGCACAGCAGATAGTA 57.257 40.909 0.00 0.00 43.65 1.82
2208 2296 3.623906 AGTCAATGCACAGCAGATAGT 57.376 42.857 0.00 0.00 43.65 2.12
2209 2297 4.941657 TCTAGTCAATGCACAGCAGATAG 58.058 43.478 0.00 0.00 43.65 2.08
2217 2305 1.804151 GCGGTTTCTAGTCAATGCACA 59.196 47.619 0.00 0.00 0.00 4.57
2227 2315 5.352284 AGTATCAACATCAGCGGTTTCTAG 58.648 41.667 0.00 0.00 0.00 2.43
2237 2325 7.173218 ACCACAACAGTTTAGTATCAACATCAG 59.827 37.037 0.00 0.00 0.00 2.90
2246 2334 7.875327 AAGAAACACCACAACAGTTTAGTAT 57.125 32.000 0.00 0.00 35.77 2.12
2251 2339 4.142249 GGCTAAGAAACACCACAACAGTTT 60.142 41.667 0.00 0.00 38.10 2.66
2256 2344 3.380320 ACAAGGCTAAGAAACACCACAAC 59.620 43.478 0.00 0.00 0.00 3.32
2270 2358 1.008327 TCAGGGAGGATCACAAGGCTA 59.992 52.381 0.00 0.00 45.06 3.93
2271 2359 0.252881 TCAGGGAGGATCACAAGGCT 60.253 55.000 0.00 0.00 45.06 4.58
2272 2360 0.842635 ATCAGGGAGGATCACAAGGC 59.157 55.000 0.00 0.00 45.06 4.35
2273 2361 2.507058 TGAATCAGGGAGGATCACAAGG 59.493 50.000 0.00 0.00 45.06 3.61
2274 2362 3.433314 CCTGAATCAGGGAGGATCACAAG 60.433 52.174 21.25 0.00 45.06 3.16
2275 2363 2.507058 CCTGAATCAGGGAGGATCACAA 59.493 50.000 21.25 0.00 45.06 3.33
2276 2364 2.121948 CCTGAATCAGGGAGGATCACA 58.878 52.381 21.25 0.00 45.06 3.58
2287 2375 2.712057 AAGCGCAAAACCTGAATCAG 57.288 45.000 11.47 2.68 0.00 2.90
2288 2376 2.360483 TCAAAGCGCAAAACCTGAATCA 59.640 40.909 11.47 0.00 0.00 2.57
2289 2377 3.011949 TCAAAGCGCAAAACCTGAATC 57.988 42.857 11.47 0.00 0.00 2.52
2290 2378 3.665745 ATCAAAGCGCAAAACCTGAAT 57.334 38.095 11.47 0.00 0.00 2.57
2291 2379 3.068024 AGAATCAAAGCGCAAAACCTGAA 59.932 39.130 11.47 0.00 0.00 3.02
2292 2380 2.622942 AGAATCAAAGCGCAAAACCTGA 59.377 40.909 11.47 2.73 0.00 3.86
2293 2381 2.727798 CAGAATCAAAGCGCAAAACCTG 59.272 45.455 11.47 4.00 0.00 4.00
2294 2382 2.362077 ACAGAATCAAAGCGCAAAACCT 59.638 40.909 11.47 0.00 0.00 3.50
2295 2383 2.472488 CACAGAATCAAAGCGCAAAACC 59.528 45.455 11.47 0.00 0.00 3.27
2296 2384 3.115554 ACACAGAATCAAAGCGCAAAAC 58.884 40.909 11.47 0.00 0.00 2.43
2297 2385 3.435105 ACACAGAATCAAAGCGCAAAA 57.565 38.095 11.47 0.00 0.00 2.44
2298 2386 3.435105 AACACAGAATCAAAGCGCAAA 57.565 38.095 11.47 0.00 0.00 3.68
2299 2387 3.114809 CAAACACAGAATCAAAGCGCAA 58.885 40.909 11.47 0.00 0.00 4.85
2300 2388 2.098934 ACAAACACAGAATCAAAGCGCA 59.901 40.909 11.47 0.00 0.00 6.09
2301 2389 2.468777 CACAAACACAGAATCAAAGCGC 59.531 45.455 0.00 0.00 0.00 5.92
2302 2390 3.044986 CCACAAACACAGAATCAAAGCG 58.955 45.455 0.00 0.00 0.00 4.68
2303 2391 4.045636 ACCACAAACACAGAATCAAAGC 57.954 40.909 0.00 0.00 0.00 3.51
2304 2392 6.183360 ACCTTACCACAAACACAGAATCAAAG 60.183 38.462 0.00 0.00 0.00 2.77
2305 2393 5.654650 ACCTTACCACAAACACAGAATCAAA 59.345 36.000 0.00 0.00 0.00 2.69
2306 2394 5.197451 ACCTTACCACAAACACAGAATCAA 58.803 37.500 0.00 0.00 0.00 2.57
2307 2395 4.787551 ACCTTACCACAAACACAGAATCA 58.212 39.130 0.00 0.00 0.00 2.57
2308 2396 6.653320 TCATACCTTACCACAAACACAGAATC 59.347 38.462 0.00 0.00 0.00 2.52
2309 2397 6.539173 TCATACCTTACCACAAACACAGAAT 58.461 36.000 0.00 0.00 0.00 2.40
2310 2398 5.931294 TCATACCTTACCACAAACACAGAA 58.069 37.500 0.00 0.00 0.00 3.02
2311 2399 5.554437 TCATACCTTACCACAAACACAGA 57.446 39.130 0.00 0.00 0.00 3.41
2312 2400 6.315393 GGTATCATACCTTACCACAAACACAG 59.685 42.308 6.59 0.00 45.52 3.66
2313 2401 6.174760 GGTATCATACCTTACCACAAACACA 58.825 40.000 6.59 0.00 45.52 3.72
2314 2402 6.673154 GGTATCATACCTTACCACAAACAC 57.327 41.667 6.59 0.00 45.52 3.32
2315 2403 7.476520 AAAGGGTATCATACCTTACCACAAACA 60.477 37.037 13.84 0.00 45.98 2.83
2316 2404 6.888088 AAAGGGTATCATACCTTACCACAAAC 59.112 38.462 13.84 0.00 45.98 2.93
2317 2405 6.887545 CAAAGGGTATCATACCTTACCACAAA 59.112 38.462 13.84 0.00 45.98 2.83
2318 2406 6.012333 ACAAAGGGTATCATACCTTACCACAA 60.012 38.462 13.84 0.00 45.98 3.33
2319 2407 5.489637 ACAAAGGGTATCATACCTTACCACA 59.510 40.000 13.84 0.00 45.98 4.17
2320 2408 5.997843 ACAAAGGGTATCATACCTTACCAC 58.002 41.667 13.84 0.00 45.98 4.16
2321 2409 6.419791 CAACAAAGGGTATCATACCTTACCA 58.580 40.000 13.84 0.00 45.98 3.25
2322 2410 5.826208 CCAACAAAGGGTATCATACCTTACC 59.174 44.000 13.84 0.00 45.98 2.85
2323 2411 6.420638 ACCAACAAAGGGTATCATACCTTAC 58.579 40.000 13.84 0.00 45.98 2.34
2324 2412 6.630863 CGACCAACAAAGGGTATCATACCTTA 60.631 42.308 13.84 0.00 45.98 2.69
2328 2416 4.510571 ACGACCAACAAAGGGTATCATAC 58.489 43.478 0.00 0.00 39.19 2.39
2329 2417 4.468510 AGACGACCAACAAAGGGTATCATA 59.531 41.667 0.00 0.00 39.19 2.15
2330 2418 3.263425 AGACGACCAACAAAGGGTATCAT 59.737 43.478 0.00 0.00 39.19 2.45
2331 2419 2.635915 AGACGACCAACAAAGGGTATCA 59.364 45.455 0.00 0.00 39.19 2.15
2332 2420 3.000727 CAGACGACCAACAAAGGGTATC 58.999 50.000 0.00 0.00 39.19 2.24
2333 2421 2.874457 GCAGACGACCAACAAAGGGTAT 60.874 50.000 0.00 0.00 39.19 2.73
2334 2422 1.541670 GCAGACGACCAACAAAGGGTA 60.542 52.381 0.00 0.00 39.19 3.69
2335 2423 0.818040 GCAGACGACCAACAAAGGGT 60.818 55.000 0.00 0.00 42.61 4.34
2336 2424 1.515521 GGCAGACGACCAACAAAGGG 61.516 60.000 0.00 0.00 0.00 3.95
2337 2425 0.535102 AGGCAGACGACCAACAAAGG 60.535 55.000 0.00 0.00 0.00 3.11
2338 2426 0.588252 CAGGCAGACGACCAACAAAG 59.412 55.000 0.00 0.00 0.00 2.77
2339 2427 0.817634 CCAGGCAGACGACCAACAAA 60.818 55.000 0.00 0.00 0.00 2.83
2340 2428 1.227823 CCAGGCAGACGACCAACAA 60.228 57.895 0.00 0.00 0.00 2.83
2341 2429 1.978455 AACCAGGCAGACGACCAACA 61.978 55.000 0.00 0.00 0.00 3.33
2342 2430 0.818040 AAACCAGGCAGACGACCAAC 60.818 55.000 0.00 0.00 0.00 3.77
2343 2431 0.106918 AAAACCAGGCAGACGACCAA 60.107 50.000 0.00 0.00 0.00 3.67
2344 2432 0.534203 GAAAACCAGGCAGACGACCA 60.534 55.000 0.00 0.00 0.00 4.02
2345 2433 1.235281 GGAAAACCAGGCAGACGACC 61.235 60.000 0.00 0.00 0.00 4.79
2346 2434 0.250338 AGGAAAACCAGGCAGACGAC 60.250 55.000 0.00 0.00 0.00 4.34
2347 2435 0.250295 CAGGAAAACCAGGCAGACGA 60.250 55.000 0.00 0.00 0.00 4.20
2348 2436 1.856265 GCAGGAAAACCAGGCAGACG 61.856 60.000 0.00 0.00 0.00 4.18
2349 2437 0.538287 AGCAGGAAAACCAGGCAGAC 60.538 55.000 0.00 0.00 0.00 3.51
2350 2438 0.250901 GAGCAGGAAAACCAGGCAGA 60.251 55.000 0.00 0.00 0.00 4.26
2351 2439 1.246737 GGAGCAGGAAAACCAGGCAG 61.247 60.000 0.00 0.00 0.00 4.85
2352 2440 1.228552 GGAGCAGGAAAACCAGGCA 60.229 57.895 0.00 0.00 0.00 4.75
2353 2441 0.540597 AAGGAGCAGGAAAACCAGGC 60.541 55.000 0.00 0.00 0.00 4.85
2354 2442 1.074566 AGAAGGAGCAGGAAAACCAGG 59.925 52.381 0.00 0.00 0.00 4.45
2355 2443 2.157738 CAGAAGGAGCAGGAAAACCAG 58.842 52.381 0.00 0.00 0.00 4.00
2356 2444 1.819305 GCAGAAGGAGCAGGAAAACCA 60.819 52.381 0.00 0.00 0.00 3.67
2357 2445 0.884514 GCAGAAGGAGCAGGAAAACC 59.115 55.000 0.00 0.00 0.00 3.27
2358 2446 0.884514 GGCAGAAGGAGCAGGAAAAC 59.115 55.000 0.00 0.00 0.00 2.43
2359 2447 0.606401 CGGCAGAAGGAGCAGGAAAA 60.606 55.000 0.00 0.00 0.00 2.29
2360 2448 1.003355 CGGCAGAAGGAGCAGGAAA 60.003 57.895 0.00 0.00 0.00 3.13
2361 2449 2.217038 ACGGCAGAAGGAGCAGGAA 61.217 57.895 0.00 0.00 0.00 3.36
2362 2450 2.604686 ACGGCAGAAGGAGCAGGA 60.605 61.111 0.00 0.00 0.00 3.86
2363 2451 2.435586 CACGGCAGAAGGAGCAGG 60.436 66.667 0.00 0.00 0.00 4.85
2364 2452 2.031516 CACACGGCAGAAGGAGCAG 61.032 63.158 0.00 0.00 0.00 4.24
2365 2453 2.031012 CACACGGCAGAAGGAGCA 59.969 61.111 0.00 0.00 0.00 4.26
2366 2454 2.743928 CCACACGGCAGAAGGAGC 60.744 66.667 0.00 0.00 0.00 4.70
2367 2455 0.535102 AAACCACACGGCAGAAGGAG 60.535 55.000 0.00 0.00 34.57 3.69
2368 2456 0.106918 AAAACCACACGGCAGAAGGA 60.107 50.000 0.00 0.00 34.57 3.36
2369 2457 0.030638 CAAAACCACACGGCAGAAGG 59.969 55.000 0.00 0.00 34.57 3.46
2370 2458 0.738389 ACAAAACCACACGGCAGAAG 59.262 50.000 0.00 0.00 34.57 2.85
2371 2459 1.135257 CAACAAAACCACACGGCAGAA 60.135 47.619 0.00 0.00 34.57 3.02
2372 2460 0.453793 CAACAAAACCACACGGCAGA 59.546 50.000 0.00 0.00 34.57 4.26
2373 2461 0.453793 TCAACAAAACCACACGGCAG 59.546 50.000 0.00 0.00 34.57 4.85
2374 2462 0.453793 CTCAACAAAACCACACGGCA 59.546 50.000 0.00 0.00 34.57 5.69
2375 2463 0.454196 ACTCAACAAAACCACACGGC 59.546 50.000 0.00 0.00 34.57 5.68
2376 2464 2.014128 AGACTCAACAAAACCACACGG 58.986 47.619 0.00 0.00 38.77 4.94
2377 2465 2.675844 TGAGACTCAACAAAACCACACG 59.324 45.455 1.64 0.00 0.00 4.49
2378 2466 3.438781 TGTGAGACTCAACAAAACCACAC 59.561 43.478 6.76 0.00 0.00 3.82
2379 2467 3.438781 GTGTGAGACTCAACAAAACCACA 59.561 43.478 6.76 0.00 0.00 4.17
2380 2468 3.485216 CGTGTGAGACTCAACAAAACCAC 60.485 47.826 6.76 8.23 0.00 4.16
2381 2469 2.675844 CGTGTGAGACTCAACAAAACCA 59.324 45.455 6.76 0.00 0.00 3.67
2382 2470 2.933906 TCGTGTGAGACTCAACAAAACC 59.066 45.455 6.76 0.00 0.00 3.27
2383 2471 4.795970 ATCGTGTGAGACTCAACAAAAC 57.204 40.909 6.76 0.66 0.00 2.43
2384 2472 4.748102 GGTATCGTGTGAGACTCAACAAAA 59.252 41.667 6.76 0.94 36.56 2.44
2385 2473 4.304110 GGTATCGTGTGAGACTCAACAAA 58.696 43.478 6.76 1.25 36.56 2.83
2386 2474 3.305813 GGGTATCGTGTGAGACTCAACAA 60.306 47.826 6.76 0.00 36.79 2.83
2387 2475 2.230508 GGGTATCGTGTGAGACTCAACA 59.769 50.000 6.76 5.25 36.79 3.33
2388 2476 2.492484 AGGGTATCGTGTGAGACTCAAC 59.508 50.000 6.76 7.15 39.34 3.18
2389 2477 2.803956 AGGGTATCGTGTGAGACTCAA 58.196 47.619 6.76 0.00 39.34 3.02
2390 2478 2.509166 AGGGTATCGTGTGAGACTCA 57.491 50.000 0.00 0.00 39.34 3.41
2391 2479 3.056749 ACAAAGGGTATCGTGTGAGACTC 60.057 47.826 0.00 0.00 37.06 3.36
2392 2480 2.897969 ACAAAGGGTATCGTGTGAGACT 59.102 45.455 0.00 0.00 36.56 3.24
2393 2481 3.314541 ACAAAGGGTATCGTGTGAGAC 57.685 47.619 0.00 0.00 35.57 3.36
2394 2482 3.556213 CCAACAAAGGGTATCGTGTGAGA 60.556 47.826 0.00 0.00 0.00 3.27
2395 2483 2.742053 CCAACAAAGGGTATCGTGTGAG 59.258 50.000 0.00 0.00 0.00 3.51
2396 2484 2.105134 ACCAACAAAGGGTATCGTGTGA 59.895 45.455 0.00 0.00 36.72 3.58
2397 2485 2.482721 GACCAACAAAGGGTATCGTGTG 59.517 50.000 0.00 0.00 39.19 3.82
2398 2486 2.774687 GACCAACAAAGGGTATCGTGT 58.225 47.619 0.00 0.00 39.19 4.49
2399 2487 1.730064 CGACCAACAAAGGGTATCGTG 59.270 52.381 0.00 0.00 39.19 4.35
2400 2488 1.345415 ACGACCAACAAAGGGTATCGT 59.655 47.619 0.00 0.00 39.19 3.73
2401 2489 1.997606 GACGACCAACAAAGGGTATCG 59.002 52.381 0.00 0.00 39.19 2.92
2402 2490 3.000727 CAGACGACCAACAAAGGGTATC 58.999 50.000 0.00 0.00 39.19 2.24
2403 2491 2.874457 GCAGACGACCAACAAAGGGTAT 60.874 50.000 0.00 0.00 39.19 2.73
2404 2492 1.541670 GCAGACGACCAACAAAGGGTA 60.542 52.381 0.00 0.00 39.19 3.69
2405 2493 0.818040 GCAGACGACCAACAAAGGGT 60.818 55.000 0.00 0.00 42.61 4.34
2406 2494 1.515521 GGCAGACGACCAACAAAGGG 61.516 60.000 0.00 0.00 0.00 3.95
2407 2495 1.515521 GGGCAGACGACCAACAAAGG 61.516 60.000 0.00 0.00 41.77 3.11
2408 2496 1.841663 CGGGCAGACGACCAACAAAG 61.842 60.000 0.00 0.00 42.68 2.77
2409 2497 1.890041 CGGGCAGACGACCAACAAA 60.890 57.895 0.00 0.00 42.68 2.83
2410 2498 2.280524 CGGGCAGACGACCAACAA 60.281 61.111 0.00 0.00 42.68 2.83
2411 2499 4.308458 CCGGGCAGACGACCAACA 62.308 66.667 0.00 0.00 42.68 3.33
2412 2500 3.819877 AACCGGGCAGACGACCAAC 62.820 63.158 6.32 0.00 42.68 3.77
2413 2501 3.109592 AAACCGGGCAGACGACCAA 62.110 57.895 6.32 0.00 42.68 3.67
2414 2502 3.552384 AAACCGGGCAGACGACCA 61.552 61.111 6.32 0.00 42.68 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.