Multiple sequence alignment - TraesCS1A01G159000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G159000 chr1A 100.000 3751 0 0 1 3751 284319491 284323241 0.000000e+00 6927.0
1 TraesCS1A01G159000 chr1A 86.831 486 37 9 1 483 523119112 523119573 5.550000e-143 518.0
2 TraesCS1A01G159000 chr1A 92.369 249 17 1 3286 3532 546321093 546321341 1.660000e-93 353.0
3 TraesCS1A01G159000 chr1D 92.237 2280 106 24 776 3009 220419833 220422087 0.000000e+00 3164.0
4 TraesCS1A01G159000 chr1B 92.262 2171 93 27 776 2886 315391244 315389089 0.000000e+00 3009.0
5 TraesCS1A01G159000 chr1B 92.366 262 16 4 1 260 92346449 92346708 1.650000e-98 370.0
6 TraesCS1A01G159000 chr1B 91.954 261 18 3 1 260 300987700 300987958 2.750000e-96 363.0
7 TraesCS1A01G159000 chr1B 100.000 28 0 0 2734 2761 315389300 315389273 7.000000e-03 52.8
8 TraesCS1A01G159000 chr5D 85.714 1596 162 34 1101 2638 404188433 404190020 0.000000e+00 1624.0
9 TraesCS1A01G159000 chr5D 85.876 1586 145 39 1107 2634 403155580 403154016 0.000000e+00 1615.0
10 TraesCS1A01G159000 chr5A 92.857 798 35 14 1 779 444069652 444070446 0.000000e+00 1138.0
11 TraesCS1A01G159000 chr5A 87.683 958 83 13 1101 2027 510883720 510884673 0.000000e+00 1083.0
12 TraesCS1A01G159000 chr5A 86.998 946 94 5 1110 2027 510015613 510014669 0.000000e+00 1038.0
13 TraesCS1A01G159000 chr5A 92.777 443 22 6 345 779 398898333 398897893 1.900000e-177 632.0
14 TraesCS1A01G159000 chr5A 87.546 538 47 10 2099 2634 510884776 510885295 4.140000e-169 604.0
15 TraesCS1A01G159000 chr5A 86.299 562 56 11 2099 2657 510013524 510012981 3.230000e-165 592.0
16 TraesCS1A01G159000 chr5A 87.529 433 25 17 3 419 37054108 37054527 1.220000e-129 473.0
17 TraesCS1A01G159000 chr5A 94.828 58 3 0 309 366 26116956 26117013 1.430000e-14 91.6
18 TraesCS1A01G159000 chr5B 88.198 949 83 10 1107 2027 484644988 484644041 0.000000e+00 1105.0
19 TraesCS1A01G159000 chr5B 85.011 914 91 20 1766 2648 485427483 485428381 0.000000e+00 887.0
20 TraesCS1A01G159000 chr5B 86.744 694 72 8 1101 1775 485426326 485427018 0.000000e+00 754.0
21 TraesCS1A01G159000 chr5B 87.661 543 47 10 2094 2634 484643946 484643422 6.890000e-172 614.0
22 TraesCS1A01G159000 chr2D 87.487 975 86 9 1080 2027 336653643 336654608 0.000000e+00 1092.0
23 TraesCS1A01G159000 chr2D 86.214 457 58 2 2092 2543 336654724 336655180 1.210000e-134 490.0
24 TraesCS1A01G159000 chr2D 85.676 377 53 1 3006 3381 203608268 203607892 2.720000e-106 396.0
25 TraesCS1A01G159000 chr2A 86.626 972 85 8 1080 2025 446998000 446998952 0.000000e+00 1033.0
26 TraesCS1A01G159000 chr2A 89.982 559 38 12 236 781 1597595 1597042 0.000000e+00 706.0
27 TraesCS1A01G159000 chr2A 88.163 566 62 4 2092 2652 446999064 446999629 0.000000e+00 669.0
28 TraesCS1A01G159000 chr2A 91.207 489 32 8 1 483 134268841 134268358 0.000000e+00 654.0
29 TraesCS1A01G159000 chr2A 86.417 427 44 6 3320 3745 710491302 710491715 4.420000e-124 455.0
30 TraesCS1A01G159000 chr2A 81.885 541 82 9 3006 3531 466018060 466018599 3.440000e-120 442.0
31 TraesCS1A01G159000 chr2A 97.778 225 5 0 3527 3751 106924723 106924947 4.540000e-104 388.0
32 TraesCS1A01G159000 chr2A 97.309 223 6 0 3529 3751 420217980 420217758 2.730000e-101 379.0
33 TraesCS1A01G159000 chr2A 96.507 229 7 1 3523 3751 148396072 148395845 9.830000e-101 377.0
34 TraesCS1A01G159000 chr2A 96.507 229 7 1 3523 3751 671402138 671401911 9.830000e-101 377.0
35 TraesCS1A01G159000 chr7D 87.765 613 71 3 1080 1688 506886566 506887178 0.000000e+00 713.0
36 TraesCS1A01G159000 chr7D 94.515 237 11 2 3297 3533 581088241 581088475 7.660000e-97 364.0
37 TraesCS1A01G159000 chr7A 90.947 486 36 6 1 483 419765654 419766134 0.000000e+00 647.0
38 TraesCS1A01G159000 chr7A 91.982 449 26 7 340 781 25888022 25888467 4.110000e-174 621.0
39 TraesCS1A01G159000 chr7A 88.613 483 40 11 1 483 578113952 578113485 1.170000e-159 573.0
40 TraesCS1A01G159000 chr7A 96.943 229 5 2 3523 3751 138078872 138078646 2.110000e-102 383.0
41 TraesCS1A01G159000 chr7A 85.531 311 29 5 3455 3751 650967904 650967596 1.010000e-80 311.0
42 TraesCS1A01G159000 chr7A 79.876 323 60 2 3158 3475 449562761 449563083 8.100000e-57 231.0
43 TraesCS1A01G159000 chr6A 92.341 457 23 7 340 784 602500082 602500538 1.140000e-179 640.0
44 TraesCS1A01G159000 chr6A 91.796 451 27 8 340 781 133639388 133639837 1.480000e-173 619.0
45 TraesCS1A01G159000 chr6A 89.669 484 32 11 1 483 140549553 140549087 5.360000e-168 601.0
46 TraesCS1A01G159000 chr6A 92.233 309 20 3 3003 3308 512838205 512837898 5.750000e-118 435.0
47 TraesCS1A01G159000 chr6A 88.417 259 27 3 3275 3532 198155086 198154830 3.640000e-80 309.0
48 TraesCS1A01G159000 chr6A 93.452 168 9 2 3516 3683 203350048 203350213 8.050000e-62 248.0
49 TraesCS1A01G159000 chr6A 93.491 169 7 4 3516 3683 509480407 509480242 8.050000e-62 248.0
50 TraesCS1A01G159000 chr6A 73.547 499 86 35 2126 2615 117004447 117003986 8.390000e-32 148.0
51 TraesCS1A01G159000 chr6A 85.047 107 15 1 2509 2615 117002239 117002134 1.420000e-19 108.0
52 TraesCS1A01G159000 chr2B 87.455 550 64 5 2092 2637 404183973 404184521 2.460000e-176 628.0
53 TraesCS1A01G159000 chr4A 91.964 448 25 6 340 780 682059982 682060425 5.320000e-173 617.0
54 TraesCS1A01G159000 chr4A 97.807 228 4 1 3524 3751 193748686 193748460 3.510000e-105 392.0
55 TraesCS1A01G159000 chr4A 97.391 230 5 1 3522 3751 612180600 612180372 1.260000e-104 390.0
56 TraesCS1A01G159000 chr4A 93.254 252 16 1 3287 3537 601283027 601283278 1.650000e-98 370.0
57 TraesCS1A01G159000 chr4A 94.093 237 14 0 3297 3533 470875149 470875385 9.900000e-96 361.0
58 TraesCS1A01G159000 chr4A 86.770 257 13 10 3514 3751 709071152 709070898 2.220000e-67 267.0
59 TraesCS1A01G159000 chr4A 94.083 169 7 3 3516 3683 502802404 502802570 1.730000e-63 254.0
60 TraesCS1A01G159000 chr4A 94.083 169 7 3 3516 3683 502837257 502837423 1.730000e-63 254.0
61 TraesCS1A01G159000 chr3A 91.593 452 29 5 340 784 26722256 26721807 1.910000e-172 616.0
62 TraesCS1A01G159000 chr3A 87.044 548 65 6 2992 3533 396334944 396334397 6.890000e-172 614.0
63 TraesCS1A01G159000 chr3A 89.648 483 39 8 1 483 26722656 26722185 4.140000e-169 604.0
64 TraesCS1A01G159000 chr3A 83.333 540 77 8 3006 3533 473447307 473446769 1.570000e-133 486.0
65 TraesCS1A01G159000 chr3A 96.167 287 11 0 3009 3295 120267470 120267184 1.580000e-128 470.0
66 TraesCS1A01G159000 chr3A 97.380 229 5 1 3523 3751 126847631 126847858 4.540000e-104 388.0
67 TraesCS1A01G159000 chr3A 91.667 276 23 0 3258 3533 299719248 299719523 2.110000e-102 383.0
68 TraesCS1A01G159000 chr3A 84.120 233 21 6 3308 3540 378026916 378027132 1.060000e-50 211.0
69 TraesCS1A01G159000 chr3A 96.552 58 2 0 309 366 21231490 21231547 3.080000e-16 97.1
70 TraesCS1A01G159000 chr7B 90.870 460 32 8 340 791 448463582 448464039 3.200000e-170 608.0
71 TraesCS1A01G159000 chr7B 94.237 295 16 1 3004 3297 424832653 424832359 2.050000e-122 449.0
72 TraesCS1A01G159000 chr3D 83.824 544 72 9 3006 3533 22562400 22561857 1.560000e-138 503.0
73 TraesCS1A01G159000 chr6B 86.542 483 26 22 1 483 131282256 131282699 2.600000e-136 496.0
74 TraesCS1A01G159000 chr6D 83.510 473 72 4 3006 3472 325977976 325977504 1.600000e-118 436.0
75 TraesCS1A01G159000 chr6D 91.429 245 18 2 3508 3749 390865621 390865377 2.160000e-87 333.0
76 TraesCS1A01G159000 chr6D 74.364 511 85 35 2126 2627 97929169 97928696 3.850000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G159000 chr1A 284319491 284323241 3750 False 6927.0 6927 100.0000 1 3751 1 chr1A.!!$F1 3750
1 TraesCS1A01G159000 chr1D 220419833 220422087 2254 False 3164.0 3164 92.2370 776 3009 1 chr1D.!!$F1 2233
2 TraesCS1A01G159000 chr1B 315389089 315391244 2155 True 1530.9 3009 96.1310 776 2886 2 chr1B.!!$R1 2110
3 TraesCS1A01G159000 chr5D 404188433 404190020 1587 False 1624.0 1624 85.7140 1101 2638 1 chr5D.!!$F1 1537
4 TraesCS1A01G159000 chr5D 403154016 403155580 1564 True 1615.0 1615 85.8760 1107 2634 1 chr5D.!!$R1 1527
5 TraesCS1A01G159000 chr5A 444069652 444070446 794 False 1138.0 1138 92.8570 1 779 1 chr5A.!!$F3 778
6 TraesCS1A01G159000 chr5A 510883720 510885295 1575 False 843.5 1083 87.6145 1101 2634 2 chr5A.!!$F4 1533
7 TraesCS1A01G159000 chr5A 510012981 510015613 2632 True 815.0 1038 86.6485 1110 2657 2 chr5A.!!$R2 1547
8 TraesCS1A01G159000 chr5B 484643422 484644988 1566 True 859.5 1105 87.9295 1107 2634 2 chr5B.!!$R1 1527
9 TraesCS1A01G159000 chr5B 485426326 485428381 2055 False 820.5 887 85.8775 1101 2648 2 chr5B.!!$F1 1547
10 TraesCS1A01G159000 chr2D 336653643 336655180 1537 False 791.0 1092 86.8505 1080 2543 2 chr2D.!!$F1 1463
11 TraesCS1A01G159000 chr2A 446998000 446999629 1629 False 851.0 1033 87.3945 1080 2652 2 chr2A.!!$F4 1572
12 TraesCS1A01G159000 chr2A 1597042 1597595 553 True 706.0 706 89.9820 236 781 1 chr2A.!!$R1 545
13 TraesCS1A01G159000 chr2A 466018060 466018599 539 False 442.0 442 81.8850 3006 3531 1 chr2A.!!$F2 525
14 TraesCS1A01G159000 chr7D 506886566 506887178 612 False 713.0 713 87.7650 1080 1688 1 chr7D.!!$F1 608
15 TraesCS1A01G159000 chr2B 404183973 404184521 548 False 628.0 628 87.4550 2092 2637 1 chr2B.!!$F1 545
16 TraesCS1A01G159000 chr3A 396334397 396334944 547 True 614.0 614 87.0440 2992 3533 1 chr3A.!!$R2 541
17 TraesCS1A01G159000 chr3A 26721807 26722656 849 True 610.0 616 90.6205 1 784 2 chr3A.!!$R4 783
18 TraesCS1A01G159000 chr3A 473446769 473447307 538 True 486.0 486 83.3330 3006 3533 1 chr3A.!!$R3 527
19 TraesCS1A01G159000 chr3D 22561857 22562400 543 True 503.0 503 83.8240 3006 3533 1 chr3D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 815 0.326238 TGAGGTGGGATGAGGTACCC 60.326 60.0 8.74 0.32 45.74 3.69 F
1040 1160 0.834612 TTCCCAATCTAATCGCCGGT 59.165 50.0 1.90 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1733 0.261991 TCTTCTGCCCGAGGTAGGAT 59.738 55.0 7.88 0.0 36.09 3.24 R
3008 4863 0.040204 CTTTGCATTGGGGGAGGTCT 59.960 55.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.295070 GGTATGACGGTTTTGCTGGTTT 59.705 45.455 0.00 0.00 0.00 3.27
115 116 9.396022 ACCATGTAATTAAGAAGAACGAATCAT 57.604 29.630 0.00 0.00 0.00 2.45
133 134 2.144730 CATGTTTGGGGTCGAACGTAA 58.855 47.619 0.00 0.00 39.55 3.18
148 149 1.951602 ACGTAAGCAGGGAAAACCAAC 59.048 47.619 0.00 0.00 42.16 3.77
406 507 3.516300 TCCGTTGATTTGGCTAAGGTAGA 59.484 43.478 0.00 0.00 0.00 2.59
501 602 7.848128 AGGAAAGTTAGATCCGTGATCTTTTA 58.152 34.615 17.79 2.47 45.86 1.52
678 789 2.721945 TTTTTCGGTTCATGGCGGT 58.278 47.368 0.00 0.00 0.00 5.68
704 815 0.326238 TGAGGTGGGATGAGGTACCC 60.326 60.000 8.74 0.32 45.74 3.69
731 842 3.045601 ACCATGAAAGGTGAGACGAAG 57.954 47.619 0.00 0.00 41.30 3.79
753 864 5.552178 AGAAAAACCTGAAAGCGAGACTAT 58.448 37.500 0.00 0.00 0.00 2.12
769 880 6.918569 GCGAGACTATCAACTGCTTTATTAGA 59.081 38.462 0.00 0.00 0.00 2.10
801 912 1.925185 GATTGAACGCGAAGACTACCC 59.075 52.381 15.93 0.00 0.00 3.69
812 923 4.378253 GCGAAGACTACCCGACATATAGTC 60.378 50.000 3.02 3.02 43.41 2.59
863 982 2.708255 CGTACTCCTCGCTCGTCC 59.292 66.667 0.00 0.00 0.00 4.79
883 1002 1.265635 CGGCGACTATCTCTCTCCTTG 59.734 57.143 0.00 0.00 0.00 3.61
900 1019 6.123651 TCTCCTTGGACTCAGTAGATTAGTC 58.876 44.000 0.00 0.00 39.12 2.59
902 1021 5.652891 TCCTTGGACTCAGTAGATTAGTCAC 59.347 44.000 0.00 0.00 41.15 3.67
929 1048 2.907910 TCGCGTTCTAGTAACAGACC 57.092 50.000 5.77 0.00 0.00 3.85
938 1057 5.633830 TCTAGTAACAGACCAAACGGTAG 57.366 43.478 0.00 0.00 36.70 3.18
940 1059 6.237901 TCTAGTAACAGACCAAACGGTAGTA 58.762 40.000 0.00 0.00 36.70 1.82
1005 1125 2.438434 CTCGCCACACCCCATTCC 60.438 66.667 0.00 0.00 0.00 3.01
1023 1143 0.857935 CCTTCATGCGAGCGAGATTC 59.142 55.000 0.00 0.00 0.00 2.52
1038 1158 3.045601 AGATTCCCAATCTAATCGCCG 57.954 47.619 0.00 0.00 46.09 6.46
1039 1159 2.076863 GATTCCCAATCTAATCGCCGG 58.923 52.381 0.00 0.00 35.02 6.13
1040 1160 0.834612 TTCCCAATCTAATCGCCGGT 59.165 50.000 1.90 0.00 0.00 5.28
1041 1161 0.834612 TCCCAATCTAATCGCCGGTT 59.165 50.000 1.90 0.00 0.00 4.44
1045 1165 2.550978 CAATCTAATCGCCGGTTCTGT 58.449 47.619 1.90 0.00 0.00 3.41
1064 1188 0.882927 TTTCTCCGCCCACAACGAAG 60.883 55.000 0.00 0.00 0.00 3.79
1090 1214 1.175983 AGAGATCGTCGGAGATGGCC 61.176 60.000 0.00 0.00 45.05 5.36
1102 1226 4.344865 ATGGCCACCTTCCGCGTT 62.345 61.111 8.16 0.00 0.00 4.84
1121 1245 3.494336 CGGACGCGTCGGAGTACT 61.494 66.667 35.08 0.00 32.43 2.73
1186 1311 1.146263 GGCGTAGGTCTTCATGGGG 59.854 63.158 0.00 0.00 0.00 4.96
1278 1403 2.998097 CCCTTCATCCTTCCCGCA 59.002 61.111 0.00 0.00 0.00 5.69
1413 1541 4.363990 AGCCACGTCCACGAGCTG 62.364 66.667 16.73 1.85 45.28 4.24
1485 1613 2.948889 TGGAGGAGATCTTCAAGGGA 57.051 50.000 3.21 0.00 0.00 4.20
1544 1672 2.893637 GCTGGAGCTTAATCAGTTCGA 58.106 47.619 0.00 0.00 33.51 3.71
1657 1785 2.198426 CCAACCAGGCCAAGGTGT 59.802 61.111 19.37 8.11 39.86 4.16
1666 1794 2.359478 CCAAGGTGTACGTGGCCC 60.359 66.667 0.00 0.00 41.79 5.80
1736 1881 1.649321 AGTGGATGCTGAGACCAAGA 58.351 50.000 0.00 0.00 35.40 3.02
1807 2426 2.594592 GCCGAGGTGCAGGTGTTT 60.595 61.111 0.00 0.00 0.00 2.83
1817 2436 1.337703 TGCAGGTGTTTGAGAATGCAC 59.662 47.619 0.00 0.00 38.64 4.57
2054 3792 4.793216 CGTATGCATGTGCTTAAACCTTTC 59.207 41.667 10.16 0.00 42.66 2.62
2059 3797 5.242615 TGCATGTGCTTAAACCTTTCATACA 59.757 36.000 6.55 0.00 42.66 2.29
2141 3961 2.771089 CTGTTCTACAGCAGGCAGAAA 58.229 47.619 0.00 0.00 39.62 2.52
2678 4507 3.228188 TGATTTGGTGCCAAGACTCTT 57.772 42.857 3.72 0.00 37.24 2.85
2690 4519 3.434984 CCAAGACTCTTGTCAGCTTAAGC 59.565 47.826 20.09 20.09 45.20 3.09
2706 4561 4.796830 GCTTAAGCGTTAAATTAGGTTGCC 59.203 41.667 12.53 0.00 0.00 4.52
2783 4638 3.797256 GTCCACTATCAGTCGTGTTATGC 59.203 47.826 0.00 0.00 0.00 3.14
2805 4660 5.705441 TGCTTCGAACATTTTCCTGAAGTAT 59.295 36.000 0.00 0.00 34.29 2.12
2806 4661 6.206634 TGCTTCGAACATTTTCCTGAAGTATT 59.793 34.615 0.00 0.00 34.29 1.89
2807 4662 7.389330 TGCTTCGAACATTTTCCTGAAGTATTA 59.611 33.333 0.00 0.00 34.29 0.98
2853 4708 8.915654 GCACCTTTGATATTACAAGAAACTTTG 58.084 33.333 0.00 0.00 0.00 2.77
2857 4712 9.132521 CTTTGATATTACAAGAAACTTTGCAGG 57.867 33.333 0.00 0.00 0.00 4.85
2873 4728 1.615392 GCAGGGCAAAACATGTTCTCT 59.385 47.619 12.39 1.56 0.00 3.10
2909 4764 8.589335 AGTAGAAAGTTACTTGTGTGTACATG 57.411 34.615 0.00 0.00 36.53 3.21
2911 4766 7.478520 AGAAAGTTACTTGTGTGTACATGTC 57.521 36.000 0.00 0.00 42.26 3.06
2914 4769 7.941795 AAGTTACTTGTGTGTACATGTCTAC 57.058 36.000 0.00 3.31 42.26 2.59
2916 4771 7.368833 AGTTACTTGTGTGTACATGTCTACTC 58.631 38.462 0.00 4.64 42.26 2.59
2920 4775 4.157246 TGTGTGTACATGTCTACTCCCTT 58.843 43.478 0.00 0.00 0.00 3.95
2922 4777 5.169295 GTGTGTACATGTCTACTCCCTTTC 58.831 45.833 0.00 0.00 0.00 2.62
2924 4779 5.185249 TGTGTACATGTCTACTCCCTTTCTC 59.815 44.000 0.00 0.00 0.00 2.87
2929 4784 5.186797 ACATGTCTACTCCCTTTCTCTCAAG 59.813 44.000 0.00 0.00 0.00 3.02
2941 4796 6.154363 CCCTTTCTCTCAAGATAAGTGTCTCT 59.846 42.308 0.00 0.00 0.00 3.10
2944 4799 7.633193 TTCTCTCAAGATAAGTGTCTCTACC 57.367 40.000 0.00 0.00 0.00 3.18
2946 4801 8.091952 TCTCTCAAGATAAGTGTCTCTACCTA 57.908 38.462 0.00 0.00 0.00 3.08
2947 4802 8.719596 TCTCTCAAGATAAGTGTCTCTACCTAT 58.280 37.037 0.00 0.00 0.00 2.57
2994 4849 7.715265 ACATAGTTAAGACACTTGTGTTGAG 57.285 36.000 7.87 0.00 33.38 3.02
2995 4850 7.497595 ACATAGTTAAGACACTTGTGTTGAGA 58.502 34.615 7.87 0.00 33.38 3.27
2996 4851 7.438459 ACATAGTTAAGACACTTGTGTTGAGAC 59.562 37.037 7.87 5.80 33.38 3.36
2997 4852 4.804139 AGTTAAGACACTTGTGTTGAGACG 59.196 41.667 7.87 0.00 33.38 4.18
2998 4853 3.520290 AAGACACTTGTGTTGAGACGA 57.480 42.857 7.87 0.00 29.81 4.20
2999 4854 3.085443 AGACACTTGTGTTGAGACGAG 57.915 47.619 7.87 0.00 33.98 4.18
3000 4855 2.128035 GACACTTGTGTTGAGACGAGG 58.872 52.381 7.87 0.00 32.26 4.63
3001 4856 1.202533 ACACTTGTGTTGAGACGAGGG 60.203 52.381 0.00 0.00 36.87 4.30
3002 4857 1.068588 CACTTGTGTTGAGACGAGGGA 59.931 52.381 0.00 0.00 33.03 4.20
3003 4858 1.341531 ACTTGTGTTGAGACGAGGGAG 59.658 52.381 0.00 0.00 32.26 4.30
3004 4859 1.341531 CTTGTGTTGAGACGAGGGAGT 59.658 52.381 0.00 0.00 0.00 3.85
3005 4860 2.281539 TGTGTTGAGACGAGGGAGTA 57.718 50.000 0.00 0.00 0.00 2.59
3006 4861 2.803956 TGTGTTGAGACGAGGGAGTAT 58.196 47.619 0.00 0.00 0.00 2.12
3007 4862 3.162666 TGTGTTGAGACGAGGGAGTATT 58.837 45.455 0.00 0.00 0.00 1.89
3008 4863 4.338012 TGTGTTGAGACGAGGGAGTATTA 58.662 43.478 0.00 0.00 0.00 0.98
3009 4864 4.398358 TGTGTTGAGACGAGGGAGTATTAG 59.602 45.833 0.00 0.00 0.00 1.73
3015 4870 3.148412 GACGAGGGAGTATTAGACCTCC 58.852 54.545 0.00 0.00 45.23 4.30
3027 4882 0.040204 AGACCTCCCCCAATGCAAAG 59.960 55.000 0.00 0.00 0.00 2.77
3050 4905 4.099573 GGTGCTTAGATGAGGTGCTAAGTA 59.900 45.833 0.00 0.00 43.36 2.24
3051 4906 5.221541 GGTGCTTAGATGAGGTGCTAAGTAT 60.222 44.000 0.00 0.00 43.36 2.12
3060 4915 9.442047 AGATGAGGTGCTAAGTATATTAAATGC 57.558 33.333 0.00 0.00 0.00 3.56
3078 4933 2.185004 GCCTTAGCAACTCAAGTCCA 57.815 50.000 0.00 0.00 39.53 4.02
3086 4941 2.223782 GCAACTCAAGTCCACAATGCAA 60.224 45.455 0.00 0.00 33.00 4.08
3115 4970 2.354109 GCTTTTGGGTGCTAAGCTTC 57.646 50.000 0.00 0.00 40.75 3.86
3116 4971 1.401539 GCTTTTGGGTGCTAAGCTTCG 60.402 52.381 0.00 0.00 40.75 3.79
3128 4983 6.905609 GGTGCTAAGCTTCGTACATTTAATTC 59.094 38.462 18.42 0.00 0.00 2.17
3130 4985 6.311935 TGCTAAGCTTCGTACATTTAATTCGT 59.688 34.615 0.00 0.00 0.00 3.85
3132 4987 7.162062 GCTAAGCTTCGTACATTTAATTCGTTG 59.838 37.037 0.00 0.00 0.00 4.10
3135 4990 7.450627 AGCTTCGTACATTTAATTCGTTGTAC 58.549 34.615 11.74 11.74 0.00 2.90
3148 5003 7.678194 AATTCGTTGTACACTCAAAATTGTG 57.322 32.000 0.00 0.00 39.80 3.33
3149 5004 4.593157 TCGTTGTACACTCAAAATTGTGC 58.407 39.130 0.00 0.00 37.68 4.57
3156 5011 3.701040 ACACTCAAAATTGTGCTTCCACT 59.299 39.130 0.00 0.00 42.54 4.00
3162 5017 4.853924 AAATTGTGCTTCCACTTAGGTG 57.146 40.909 0.00 0.00 42.54 4.00
3167 5022 0.602905 GCTTCCACTTAGGTGCACGT 60.603 55.000 17.24 17.24 41.75 4.49
3267 5126 0.598065 GTTGGCAACCTTAGCACCTG 59.402 55.000 19.57 0.00 0.00 4.00
3272 5131 2.500229 GCAACCTTAGCACCTGTACAA 58.500 47.619 0.00 0.00 0.00 2.41
3289 5148 0.682209 CAAGGTGGAGCATTGGGAGG 60.682 60.000 0.00 0.00 35.45 4.30
3295 5154 2.948924 AGCATTGGGAGGGGCCTT 60.949 61.111 0.84 0.00 36.66 4.35
3298 5157 1.152673 CATTGGGAGGGGCCTTAGC 60.153 63.158 0.84 0.00 36.66 3.09
3332 5194 7.187676 AGTGGGGAGTAACTTATACTAGTGTT 58.812 38.462 5.39 3.56 0.00 3.32
3521 5397 3.684788 AGCAAAAATATCTCGAAGTGCGT 59.315 39.130 0.00 0.00 41.80 5.24
3533 5409 5.122869 TCTCGAAGTGCGTTATGTTACTACT 59.877 40.000 0.00 0.00 41.80 2.57
3534 5410 5.327091 TCGAAGTGCGTTATGTTACTACTC 58.673 41.667 0.00 0.00 41.80 2.59
3535 5411 4.498323 CGAAGTGCGTTATGTTACTACTCC 59.502 45.833 0.00 0.00 34.64 3.85
3536 5412 4.382345 AGTGCGTTATGTTACTACTCCC 57.618 45.455 0.00 0.00 0.00 4.30
3537 5413 4.021916 AGTGCGTTATGTTACTACTCCCT 58.978 43.478 0.00 0.00 0.00 4.20
3538 5414 4.097589 AGTGCGTTATGTTACTACTCCCTC 59.902 45.833 0.00 0.00 0.00 4.30
3539 5415 3.382546 TGCGTTATGTTACTACTCCCTCC 59.617 47.826 0.00 0.00 0.00 4.30
3540 5416 3.635836 GCGTTATGTTACTACTCCCTCCT 59.364 47.826 0.00 0.00 0.00 3.69
3541 5417 4.099113 GCGTTATGTTACTACTCCCTCCTT 59.901 45.833 0.00 0.00 0.00 3.36
3542 5418 5.394993 GCGTTATGTTACTACTCCCTCCTTT 60.395 44.000 0.00 0.00 0.00 3.11
3543 5419 6.271566 CGTTATGTTACTACTCCCTCCTTTC 58.728 44.000 0.00 0.00 0.00 2.62
3544 5420 6.580788 GTTATGTTACTACTCCCTCCTTTCC 58.419 44.000 0.00 0.00 0.00 3.13
3545 5421 3.094572 TGTTACTACTCCCTCCTTTCCG 58.905 50.000 0.00 0.00 0.00 4.30
3546 5422 2.429971 GTTACTACTCCCTCCTTTCCGG 59.570 54.545 0.00 0.00 0.00 5.14
3547 5423 0.412640 ACTACTCCCTCCTTTCCGGT 59.587 55.000 0.00 0.00 0.00 5.28
3548 5424 1.203275 ACTACTCCCTCCTTTCCGGTT 60.203 52.381 0.00 0.00 0.00 4.44
3549 5425 1.907255 CTACTCCCTCCTTTCCGGTTT 59.093 52.381 0.00 0.00 0.00 3.27
3550 5426 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
3551 5427 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
3552 5428 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
3553 5429 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
3554 5430 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
3555 5431 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
3556 5432 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
3557 5433 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
3558 5434 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
3559 5435 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
3560 5436 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
3561 5437 5.001874 CCTTTCCGGTTTATAGGGCTTATC 58.998 45.833 0.00 0.00 0.00 1.75
3562 5438 5.221864 CCTTTCCGGTTTATAGGGCTTATCT 60.222 44.000 0.00 0.00 0.00 1.98
3563 5439 5.479124 TTCCGGTTTATAGGGCTTATCTC 57.521 43.478 0.00 0.00 0.00 2.75
3564 5440 4.485875 TCCGGTTTATAGGGCTTATCTCA 58.514 43.478 0.00 0.00 0.00 3.27
3565 5441 4.903049 TCCGGTTTATAGGGCTTATCTCAA 59.097 41.667 0.00 0.00 0.00 3.02
3566 5442 5.367352 TCCGGTTTATAGGGCTTATCTCAAA 59.633 40.000 0.00 0.00 0.00 2.69
3567 5443 6.059484 CCGGTTTATAGGGCTTATCTCAAAA 58.941 40.000 0.00 0.00 0.00 2.44
3568 5444 6.715264 CCGGTTTATAGGGCTTATCTCAAAAT 59.285 38.462 0.00 0.00 0.00 1.82
3569 5445 7.230712 CCGGTTTATAGGGCTTATCTCAAAATT 59.769 37.037 0.00 0.00 0.00 1.82
3570 5446 8.630037 CGGTTTATAGGGCTTATCTCAAAATTT 58.370 33.333 0.00 0.00 0.00 1.82
3601 5477 9.447157 TTTTCCATTTTATAAGGCTCAATTTGG 57.553 29.630 0.00 0.00 0.00 3.28
3602 5478 7.732222 TCCATTTTATAAGGCTCAATTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
3603 5479 8.144862 TCCATTTTATAAGGCTCAATTTGGTT 57.855 30.769 0.00 0.00 0.00 3.67
3604 5480 8.040132 TCCATTTTATAAGGCTCAATTTGGTTG 58.960 33.333 0.00 0.00 39.25 3.77
3605 5481 7.823799 CCATTTTATAAGGCTCAATTTGGTTGT 59.176 33.333 0.00 0.00 38.95 3.32
3606 5482 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
3607 5483 8.825667 TTTTATAAGGCTCAATTTGGTTGTTC 57.174 30.769 0.00 0.00 38.95 3.18
3608 5484 3.751479 AAGGCTCAATTTGGTTGTTCC 57.249 42.857 0.00 0.00 38.95 3.62
3609 5485 1.970640 AGGCTCAATTTGGTTGTTCCC 59.029 47.619 0.00 0.00 38.95 3.97
3610 5486 1.001974 GGCTCAATTTGGTTGTTCCCC 59.998 52.381 0.00 0.00 38.95 4.81
3611 5487 1.691434 GCTCAATTTGGTTGTTCCCCA 59.309 47.619 0.00 0.00 38.95 4.96
3612 5488 2.302733 GCTCAATTTGGTTGTTCCCCAT 59.697 45.455 0.00 0.00 38.95 4.00
3613 5489 3.617288 GCTCAATTTGGTTGTTCCCCATC 60.617 47.826 0.00 0.00 38.95 3.51
3614 5490 3.577848 CTCAATTTGGTTGTTCCCCATCA 59.422 43.478 0.00 0.00 38.95 3.07
3615 5491 3.323403 TCAATTTGGTTGTTCCCCATCAC 59.677 43.478 0.00 0.00 38.95 3.06
3616 5492 2.461300 TTTGGTTGTTCCCCATCACA 57.539 45.000 0.00 0.00 34.77 3.58
3617 5493 2.692709 TTGGTTGTTCCCCATCACAT 57.307 45.000 0.00 0.00 34.77 3.21
3618 5494 1.921982 TGGTTGTTCCCCATCACATG 58.078 50.000 0.00 0.00 34.77 3.21
3619 5495 1.146774 TGGTTGTTCCCCATCACATGT 59.853 47.619 0.00 0.00 34.77 3.21
3620 5496 2.247358 GGTTGTTCCCCATCACATGTT 58.753 47.619 0.00 0.00 0.00 2.71
3621 5497 2.231235 GGTTGTTCCCCATCACATGTTC 59.769 50.000 0.00 0.00 0.00 3.18
3622 5498 2.890311 GTTGTTCCCCATCACATGTTCA 59.110 45.455 0.00 0.00 0.00 3.18
3623 5499 2.794103 TGTTCCCCATCACATGTTCAG 58.206 47.619 0.00 0.00 0.00 3.02
3624 5500 2.374839 TGTTCCCCATCACATGTTCAGA 59.625 45.455 0.00 0.00 0.00 3.27
3625 5501 2.749621 GTTCCCCATCACATGTTCAGAC 59.250 50.000 0.00 0.00 0.00 3.51
3626 5502 2.269023 TCCCCATCACATGTTCAGACT 58.731 47.619 0.00 0.00 0.00 3.24
3627 5503 2.644299 TCCCCATCACATGTTCAGACTT 59.356 45.455 0.00 0.00 0.00 3.01
3628 5504 3.012518 CCCCATCACATGTTCAGACTTC 58.987 50.000 0.00 0.00 0.00 3.01
3629 5505 3.559811 CCCCATCACATGTTCAGACTTCA 60.560 47.826 0.00 0.00 0.00 3.02
3630 5506 4.074259 CCCATCACATGTTCAGACTTCAA 58.926 43.478 0.00 0.00 0.00 2.69
3631 5507 4.155462 CCCATCACATGTTCAGACTTCAAG 59.845 45.833 0.00 0.00 0.00 3.02
3632 5508 4.155462 CCATCACATGTTCAGACTTCAAGG 59.845 45.833 0.00 0.00 0.00 3.61
3633 5509 4.422073 TCACATGTTCAGACTTCAAGGT 57.578 40.909 0.00 0.00 0.00 3.50
3634 5510 4.129380 TCACATGTTCAGACTTCAAGGTG 58.871 43.478 0.00 0.00 0.00 4.00
3635 5511 2.880890 ACATGTTCAGACTTCAAGGTGC 59.119 45.455 0.00 0.00 0.00 5.01
3636 5512 2.708216 TGTTCAGACTTCAAGGTGCA 57.292 45.000 0.00 0.00 0.00 4.57
3637 5513 3.213206 TGTTCAGACTTCAAGGTGCAT 57.787 42.857 0.00 0.00 0.00 3.96
3638 5514 3.554934 TGTTCAGACTTCAAGGTGCATT 58.445 40.909 0.00 0.00 0.00 3.56
3639 5515 4.713553 TGTTCAGACTTCAAGGTGCATTA 58.286 39.130 0.00 0.00 0.00 1.90
3640 5516 5.129634 TGTTCAGACTTCAAGGTGCATTAA 58.870 37.500 0.00 0.00 0.00 1.40
3641 5517 5.592282 TGTTCAGACTTCAAGGTGCATTAAA 59.408 36.000 0.00 0.00 0.00 1.52
3642 5518 6.265196 TGTTCAGACTTCAAGGTGCATTAAAT 59.735 34.615 0.00 0.00 0.00 1.40
3643 5519 6.500684 TCAGACTTCAAGGTGCATTAAATC 57.499 37.500 0.00 0.00 0.00 2.17
3644 5520 6.003326 TCAGACTTCAAGGTGCATTAAATCA 58.997 36.000 0.00 0.00 0.00 2.57
3645 5521 6.660521 TCAGACTTCAAGGTGCATTAAATCAT 59.339 34.615 0.00 0.00 0.00 2.45
3646 5522 7.177216 TCAGACTTCAAGGTGCATTAAATCATT 59.823 33.333 0.00 0.00 0.00 2.57
3647 5523 7.274904 CAGACTTCAAGGTGCATTAAATCATTG 59.725 37.037 0.00 0.00 0.00 2.82
3648 5524 5.870978 ACTTCAAGGTGCATTAAATCATTGC 59.129 36.000 0.00 0.00 36.91 3.56
3649 5525 5.402997 TCAAGGTGCATTAAATCATTGCA 57.597 34.783 0.00 0.00 43.63 4.08
3650 5526 5.979993 TCAAGGTGCATTAAATCATTGCAT 58.020 33.333 4.14 0.00 46.90 3.96
3651 5527 5.813157 TCAAGGTGCATTAAATCATTGCATG 59.187 36.000 4.14 0.11 46.90 4.06
3652 5528 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
3653 5529 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
3654 5530 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
3655 5531 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
3656 5532 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
3657 5533 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
3658 5534 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
3659 5535 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
3660 5536 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
3665 5541 9.656040 AAATCATTGCATGCAAGTATTAAGAAA 57.344 25.926 34.15 10.85 39.47 2.52
3666 5542 9.656040 AATCATTGCATGCAAGTATTAAGAAAA 57.344 25.926 34.15 10.64 39.47 2.29
3667 5543 9.656040 ATCATTGCATGCAAGTATTAAGAAAAA 57.344 25.926 34.15 10.19 39.47 1.94
3686 5562 4.955925 AAAATTGACCAATGCATGCATG 57.044 36.364 32.79 23.00 36.68 4.06
3743 5619 9.612066 TTTTTGAGGAAAACAAGAGCATTAATT 57.388 25.926 0.00 0.00 32.44 1.40
3744 5620 8.592105 TTTGAGGAAAACAAGAGCATTAATTG 57.408 30.769 0.00 0.00 0.00 2.32
3745 5621 6.690530 TGAGGAAAACAAGAGCATTAATTGG 58.309 36.000 0.00 0.00 0.00 3.16
3746 5622 6.041423 AGGAAAACAAGAGCATTAATTGGG 57.959 37.500 0.00 0.00 0.00 4.12
3747 5623 5.543790 AGGAAAACAAGAGCATTAATTGGGT 59.456 36.000 0.00 0.00 0.00 4.51
3748 5624 5.639082 GGAAAACAAGAGCATTAATTGGGTG 59.361 40.000 0.00 0.00 0.00 4.61
3749 5625 3.874392 ACAAGAGCATTAATTGGGTGC 57.126 42.857 4.05 4.05 39.10 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.468670 CCATGCGATCCGGCGAAAA 61.469 57.895 9.30 0.00 35.06 2.29
115 116 1.868469 CTTACGTTCGACCCCAAACA 58.132 50.000 0.00 0.00 0.00 2.83
133 134 1.455383 CGCTGTTGGTTTTCCCTGCT 61.455 55.000 0.00 0.00 39.73 4.24
458 559 4.919774 TCCTACCTTAGCCAAATCAACA 57.080 40.909 0.00 0.00 0.00 3.33
501 602 7.863877 GGTACGGTTTATTTTCAACACTTTCAT 59.136 33.333 0.00 0.00 0.00 2.57
678 789 3.041211 CCTCATCCCACCTCATACTGAA 58.959 50.000 0.00 0.00 0.00 3.02
724 835 3.002348 CGCTTTCAGGTTTTTCTTCGTCT 59.998 43.478 0.00 0.00 0.00 4.18
731 842 5.408604 TGATAGTCTCGCTTTCAGGTTTTTC 59.591 40.000 0.00 0.00 31.71 2.29
769 880 6.132791 TCGCGTTCAATCTTATCTCTACTT 57.867 37.500 5.77 0.00 0.00 2.24
786 897 1.211190 GTCGGGTAGTCTTCGCGTT 59.789 57.895 5.77 0.00 40.94 4.84
787 898 1.310933 ATGTCGGGTAGTCTTCGCGT 61.311 55.000 5.77 0.00 40.94 6.01
863 982 1.265635 CAAGGAGAGAGATAGTCGCCG 59.734 57.143 0.00 0.00 38.80 6.46
871 990 3.756082 ACTGAGTCCAAGGAGAGAGAT 57.244 47.619 0.00 0.00 0.00 2.75
872 991 3.847184 TCTACTGAGTCCAAGGAGAGAGA 59.153 47.826 0.00 0.00 0.00 3.10
883 1002 4.201930 CGGTGTGACTAATCTACTGAGTCC 60.202 50.000 0.00 0.00 39.10 3.85
900 1019 0.098200 TAGAACGCGATCTCGGTGTG 59.902 55.000 22.88 0.00 40.23 3.82
902 1021 0.377554 ACTAGAACGCGATCTCGGTG 59.622 55.000 22.88 13.26 40.23 4.94
929 1048 5.399858 CCCGATGATAGATACTACCGTTTG 58.600 45.833 0.00 0.00 0.00 2.93
938 1057 3.746492 GGTTGTTGCCCGATGATAGATAC 59.254 47.826 0.00 0.00 0.00 2.24
940 1059 2.439507 AGGTTGTTGCCCGATGATAGAT 59.560 45.455 0.00 0.00 0.00 1.98
1005 1125 0.857935 GGAATCTCGCTCGCATGAAG 59.142 55.000 0.00 0.00 0.00 3.02
1023 1143 1.202651 AGAACCGGCGATTAGATTGGG 60.203 52.381 9.30 0.00 0.00 4.12
1036 1156 2.033194 GGCGGAGAAACAGAACCGG 61.033 63.158 0.00 0.00 44.61 5.28
1037 1157 2.033194 GGGCGGAGAAACAGAACCG 61.033 63.158 0.00 0.00 46.74 4.44
1038 1158 1.072505 TGGGCGGAGAAACAGAACC 59.927 57.895 0.00 0.00 0.00 3.62
1039 1159 0.534203 TGTGGGCGGAGAAACAGAAC 60.534 55.000 0.00 0.00 0.00 3.01
1040 1160 0.181587 TTGTGGGCGGAGAAACAGAA 59.818 50.000 0.00 0.00 0.00 3.02
1041 1161 0.534203 GTTGTGGGCGGAGAAACAGA 60.534 55.000 0.00 0.00 0.00 3.41
1045 1165 0.882927 CTTCGTTGTGGGCGGAGAAA 60.883 55.000 0.00 0.00 37.14 2.52
1064 1188 1.167155 TCCGACGATCTCTGGCTAGC 61.167 60.000 6.04 6.04 0.00 3.42
1173 1297 0.548682 ACTGCTCCCCATGAAGACCT 60.549 55.000 0.00 0.00 0.00 3.85
1181 1305 0.323178 CTTCTTGCACTGCTCCCCAT 60.323 55.000 1.98 0.00 0.00 4.00
1186 1311 1.069364 GCTGAACTTCTTGCACTGCTC 60.069 52.381 1.98 0.00 0.00 4.26
1272 1397 1.596934 GATGGTGAAGACTGCGGGA 59.403 57.895 0.00 0.00 0.00 5.14
1278 1403 2.670148 GGGGCCGATGGTGAAGACT 61.670 63.158 0.00 0.00 0.00 3.24
1317 1442 1.216710 CCTCTTGTCTGACGCCTCC 59.783 63.158 2.98 0.00 0.00 4.30
1413 1541 0.394565 CCTCGATGATCCCCTTGACC 59.605 60.000 0.00 0.00 0.00 4.02
1544 1672 1.271379 TGGCGTTGTAGATGACGAGTT 59.729 47.619 0.00 0.00 41.53 3.01
1605 1733 0.261991 TCTTCTGCCCGAGGTAGGAT 59.738 55.000 7.88 0.00 36.09 3.24
1666 1794 3.089874 TCCCTTCATCCGGGCCTG 61.090 66.667 3.88 3.88 41.69 4.85
1736 1881 3.049674 CTGCCGCACCGACAACAT 61.050 61.111 0.00 0.00 0.00 2.71
1807 2426 2.268920 GCCTCCCGTGCATTCTCA 59.731 61.111 0.00 0.00 0.00 3.27
1894 2513 1.299976 CTTGGCCGCCTTAACCTCT 59.700 57.895 11.61 0.00 0.00 3.69
2054 3792 6.476243 TGCATGAGATCGATGAAATGTATG 57.524 37.500 0.54 0.00 0.00 2.39
2059 3797 3.818773 TGCATGCATGAGATCGATGAAAT 59.181 39.130 30.64 0.00 0.00 2.17
2231 4051 1.592223 GTACAGCTTGGCGTCCTCT 59.408 57.895 0.00 0.00 0.00 3.69
2475 4295 2.040544 CCTCTTTGCCGGCATTCGT 61.041 57.895 33.25 0.00 37.11 3.85
2678 4507 5.935789 ACCTAATTTAACGCTTAAGCTGACA 59.064 36.000 24.33 5.86 39.32 3.58
2690 4519 5.494632 CCCTAAGGCAACCTAATTTAACG 57.505 43.478 0.00 0.00 31.13 3.18
2853 4708 1.615392 AGAGAACATGTTTTGCCCTGC 59.385 47.619 13.36 0.00 0.00 4.85
2857 4712 5.841957 ATATGGAGAGAACATGTTTTGCC 57.158 39.130 13.36 10.98 0.00 4.52
2889 4744 8.202137 AGTAGACATGTACACACAAGTAACTTT 58.798 33.333 0.00 0.00 36.75 2.66
2890 4745 7.723324 AGTAGACATGTACACACAAGTAACTT 58.277 34.615 0.00 0.00 36.75 2.66
2891 4746 7.286215 AGTAGACATGTACACACAAGTAACT 57.714 36.000 0.00 0.00 36.75 2.24
2892 4747 6.585322 GGAGTAGACATGTACACACAAGTAAC 59.415 42.308 0.00 0.00 36.75 2.50
2893 4748 6.294899 GGGAGTAGACATGTACACACAAGTAA 60.295 42.308 0.00 0.00 36.75 2.24
2895 4750 4.021368 GGGAGTAGACATGTACACACAAGT 60.021 45.833 0.00 0.00 39.21 3.16
2896 4751 4.220821 AGGGAGTAGACATGTACACACAAG 59.779 45.833 0.00 0.00 38.42 3.16
2899 4754 4.803098 AAGGGAGTAGACATGTACACAC 57.197 45.455 0.00 0.00 0.00 3.82
2900 4755 5.084519 AGAAAGGGAGTAGACATGTACACA 58.915 41.667 0.00 0.00 0.00 3.72
2901 4756 5.419471 AGAGAAAGGGAGTAGACATGTACAC 59.581 44.000 0.00 0.00 0.00 2.90
2902 4757 5.580998 AGAGAAAGGGAGTAGACATGTACA 58.419 41.667 0.00 0.00 0.00 2.90
2903 4758 5.652891 TGAGAGAAAGGGAGTAGACATGTAC 59.347 44.000 0.00 0.00 0.00 2.90
2906 4761 5.420421 TCTTGAGAGAAAGGGAGTAGACATG 59.580 44.000 0.00 0.00 0.00 3.21
2909 4764 7.340999 ACTTATCTTGAGAGAAAGGGAGTAGAC 59.659 40.741 9.41 0.00 35.07 2.59
2911 4766 7.123547 ACACTTATCTTGAGAGAAAGGGAGTAG 59.876 40.741 12.51 0.00 35.07 2.57
2914 4769 6.154363 AGACACTTATCTTGAGAGAAAGGGAG 59.846 42.308 12.51 5.23 35.07 4.30
2916 4771 6.154363 AGAGACACTTATCTTGAGAGAAAGGG 59.846 42.308 6.60 6.60 35.07 3.95
2920 4775 7.406916 AGGTAGAGACACTTATCTTGAGAGAA 58.593 38.462 0.00 0.00 35.07 2.87
2922 4777 8.918202 ATAGGTAGAGACACTTATCTTGAGAG 57.082 38.462 0.00 0.00 0.00 3.20
2968 4823 9.424319 CTCAACACAAGTGTCTTAACTATGTAT 57.576 33.333 6.28 0.00 44.13 2.29
2969 4824 8.635328 TCTCAACACAAGTGTCTTAACTATGTA 58.365 33.333 6.28 0.00 44.13 2.29
2970 4825 7.438459 GTCTCAACACAAGTGTCTTAACTATGT 59.562 37.037 6.28 0.00 44.13 2.29
2971 4826 7.358435 CGTCTCAACACAAGTGTCTTAACTATG 60.358 40.741 6.28 0.00 44.13 2.23
2972 4827 6.641314 CGTCTCAACACAAGTGTCTTAACTAT 59.359 38.462 6.28 0.00 44.13 2.12
2973 4828 5.975344 CGTCTCAACACAAGTGTCTTAACTA 59.025 40.000 6.28 0.00 44.13 2.24
2974 4829 4.804139 CGTCTCAACACAAGTGTCTTAACT 59.196 41.667 6.28 0.00 44.13 2.24
2975 4830 4.802039 TCGTCTCAACACAAGTGTCTTAAC 59.198 41.667 6.28 3.19 44.13 2.01
2976 4831 5.001237 TCGTCTCAACACAAGTGTCTTAA 57.999 39.130 6.28 0.00 44.13 1.85
2977 4832 4.499188 CCTCGTCTCAACACAAGTGTCTTA 60.499 45.833 6.28 0.00 44.13 2.10
2978 4833 3.448686 CTCGTCTCAACACAAGTGTCTT 58.551 45.455 6.28 0.00 44.13 3.01
2979 4834 2.223829 CCTCGTCTCAACACAAGTGTCT 60.224 50.000 6.28 0.00 44.13 3.41
2980 4835 2.128035 CCTCGTCTCAACACAAGTGTC 58.872 52.381 6.28 0.00 44.13 3.67
2982 4837 1.068588 TCCCTCGTCTCAACACAAGTG 59.931 52.381 0.00 0.00 0.00 3.16
2983 4838 1.341531 CTCCCTCGTCTCAACACAAGT 59.658 52.381 0.00 0.00 0.00 3.16
2984 4839 1.341531 ACTCCCTCGTCTCAACACAAG 59.658 52.381 0.00 0.00 0.00 3.16
2985 4840 1.410004 ACTCCCTCGTCTCAACACAA 58.590 50.000 0.00 0.00 0.00 3.33
2986 4841 2.281539 TACTCCCTCGTCTCAACACA 57.718 50.000 0.00 0.00 0.00 3.72
2987 4842 3.870633 AATACTCCCTCGTCTCAACAC 57.129 47.619 0.00 0.00 0.00 3.32
2988 4843 4.639310 GTCTAATACTCCCTCGTCTCAACA 59.361 45.833 0.00 0.00 0.00 3.33
2989 4844 4.036616 GGTCTAATACTCCCTCGTCTCAAC 59.963 50.000 0.00 0.00 0.00 3.18
2990 4845 4.079901 AGGTCTAATACTCCCTCGTCTCAA 60.080 45.833 0.00 0.00 0.00 3.02
2991 4846 3.458857 AGGTCTAATACTCCCTCGTCTCA 59.541 47.826 0.00 0.00 0.00 3.27
2992 4847 4.067192 GAGGTCTAATACTCCCTCGTCTC 58.933 52.174 0.00 0.00 34.62 3.36
2993 4848 3.181441 GGAGGTCTAATACTCCCTCGTCT 60.181 52.174 0.00 0.00 46.01 4.18
2994 4849 3.148412 GGAGGTCTAATACTCCCTCGTC 58.852 54.545 0.00 0.00 46.01 4.20
2995 4850 3.226682 GGAGGTCTAATACTCCCTCGT 57.773 52.381 0.00 0.00 46.01 4.18
3001 4856 3.244596 GCATTGGGGGAGGTCTAATACTC 60.245 52.174 0.00 0.00 0.00 2.59
3002 4857 2.711547 GCATTGGGGGAGGTCTAATACT 59.288 50.000 0.00 0.00 0.00 2.12
3003 4858 2.441750 TGCATTGGGGGAGGTCTAATAC 59.558 50.000 0.00 0.00 0.00 1.89
3004 4859 2.782922 TGCATTGGGGGAGGTCTAATA 58.217 47.619 0.00 0.00 0.00 0.98
3005 4860 1.607225 TGCATTGGGGGAGGTCTAAT 58.393 50.000 0.00 0.00 0.00 1.73
3006 4861 1.377690 TTGCATTGGGGGAGGTCTAA 58.622 50.000 0.00 0.00 0.00 2.10
3007 4862 1.284785 CTTTGCATTGGGGGAGGTCTA 59.715 52.381 0.00 0.00 0.00 2.59
3008 4863 0.040204 CTTTGCATTGGGGGAGGTCT 59.960 55.000 0.00 0.00 0.00 3.85
3009 4864 0.972471 CCTTTGCATTGGGGGAGGTC 60.972 60.000 0.00 0.00 0.00 3.85
3027 4882 3.118592 ACTTAGCACCTCATCTAAGCACC 60.119 47.826 8.44 0.00 43.27 5.01
3060 4915 3.126001 TGTGGACTTGAGTTGCTAAGG 57.874 47.619 0.00 0.00 0.00 2.69
3086 4941 1.963515 CACCCAAAAGCTTAGCACCTT 59.036 47.619 7.07 0.00 0.00 3.50
3097 4952 1.880027 ACGAAGCTTAGCACCCAAAAG 59.120 47.619 7.07 0.00 0.00 2.27
3100 4955 1.345089 TGTACGAAGCTTAGCACCCAA 59.655 47.619 7.07 0.00 0.00 4.12
3102 4957 2.311124 ATGTACGAAGCTTAGCACCC 57.689 50.000 7.07 0.00 0.00 4.61
3104 4959 6.623743 CGAATTAAATGTACGAAGCTTAGCAC 59.376 38.462 7.07 4.71 0.00 4.40
3115 4970 7.722336 TGAGTGTACAACGAATTAAATGTACG 58.278 34.615 16.20 0.00 46.93 3.67
3116 4971 9.866936 TTTGAGTGTACAACGAATTAAATGTAC 57.133 29.630 15.18 15.18 45.18 2.90
3128 4983 4.597079 AGCACAATTTTGAGTGTACAACG 58.403 39.130 0.00 0.00 38.02 4.10
3130 4985 5.126222 TGGAAGCACAATTTTGAGTGTACAA 59.874 36.000 0.00 0.00 38.02 2.41
3132 4987 4.976116 GTGGAAGCACAATTTTGAGTGTAC 59.024 41.667 0.00 0.00 38.02 2.90
3135 4990 4.311816 AGTGGAAGCACAATTTTGAGTG 57.688 40.909 0.00 0.00 38.74 3.51
3148 5003 0.602905 ACGTGCACCTAAGTGGAAGC 60.603 55.000 12.15 0.00 46.79 3.86
3149 5004 1.148310 CACGTGCACCTAAGTGGAAG 58.852 55.000 12.15 0.00 46.79 3.46
3156 5011 0.034198 TGCTAAGCACGTGCACCTAA 59.966 50.000 39.21 20.50 45.16 2.69
3167 5022 1.071699 AGGAAGAAACGGTGCTAAGCA 59.928 47.619 0.00 0.00 35.60 3.91
3203 5058 6.646240 GGCATGCTAATTAAGAAGAGAGAGAG 59.354 42.308 18.92 0.00 0.00 3.20
3245 5102 2.107552 AGGTGCTAAGGTTGCCAACTAA 59.892 45.455 7.62 0.00 0.00 2.24
3248 5105 0.598065 CAGGTGCTAAGGTTGCCAAC 59.402 55.000 0.00 0.00 0.00 3.77
3249 5106 0.184933 ACAGGTGCTAAGGTTGCCAA 59.815 50.000 0.00 0.00 0.00 4.52
3267 5126 1.004277 TCCCAATGCTCCACCTTGTAC 59.996 52.381 0.00 0.00 0.00 2.90
3272 5131 2.311854 CCCTCCCAATGCTCCACCT 61.312 63.158 0.00 0.00 0.00 4.00
3295 5154 0.639943 TCCCCACTATGACCAGGCTA 59.360 55.000 0.00 0.00 0.00 3.93
3298 5157 2.434702 GTTACTCCCCACTATGACCAGG 59.565 54.545 0.00 0.00 0.00 4.45
3335 5197 7.627298 AGTAACTTCGACTAGTGTCATATGT 57.373 36.000 0.00 0.00 43.06 2.29
3351 5213 9.372369 ACTTTGCACTATGAAGATAGTAACTTC 57.628 33.333 12.08 12.08 42.55 3.01
3384 5246 6.731292 TGAAGCCACATATGACACTACTAT 57.269 37.500 10.38 0.00 0.00 2.12
3429 5293 1.398390 CATAGCGCTTCCCAAGACAAC 59.602 52.381 18.68 0.00 0.00 3.32
3512 5388 4.498323 GGAGTAGTAACATAACGCACTTCG 59.502 45.833 0.00 0.00 45.38 3.79
3521 5397 5.361857 CGGAAAGGAGGGAGTAGTAACATAA 59.638 44.000 0.00 0.00 0.00 1.90
3533 5409 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
3534 5410 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
3535 5411 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
3536 5412 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
3537 5413 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
3539 5415 5.866207 AGATAAGCCCTATAAACCGGAAAG 58.134 41.667 9.46 0.00 0.00 2.62
3540 5416 5.367352 TGAGATAAGCCCTATAAACCGGAAA 59.633 40.000 9.46 0.00 0.00 3.13
3541 5417 4.903049 TGAGATAAGCCCTATAAACCGGAA 59.097 41.667 9.46 0.00 0.00 4.30
3542 5418 4.485875 TGAGATAAGCCCTATAAACCGGA 58.514 43.478 9.46 0.00 0.00 5.14
3543 5419 4.884668 TGAGATAAGCCCTATAAACCGG 57.115 45.455 0.00 0.00 0.00 5.28
3544 5420 7.745620 ATTTTGAGATAAGCCCTATAAACCG 57.254 36.000 0.00 0.00 0.00 4.44
3575 5451 9.447157 CCAAATTGAGCCTTATAAAATGGAAAA 57.553 29.630 0.00 0.00 0.00 2.29
3576 5452 8.601546 ACCAAATTGAGCCTTATAAAATGGAAA 58.398 29.630 0.00 0.00 0.00 3.13
3577 5453 8.144862 ACCAAATTGAGCCTTATAAAATGGAA 57.855 30.769 0.00 0.00 0.00 3.53
3578 5454 7.732222 ACCAAATTGAGCCTTATAAAATGGA 57.268 32.000 0.00 0.00 0.00 3.41
3579 5455 7.823799 ACAACCAAATTGAGCCTTATAAAATGG 59.176 33.333 0.00 0.00 41.23 3.16
3580 5456 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
3581 5457 9.435688 GAACAACCAAATTGAGCCTTATAAAAT 57.564 29.630 0.00 0.00 41.23 1.82
3582 5458 7.875554 GGAACAACCAAATTGAGCCTTATAAAA 59.124 33.333 0.00 0.00 41.23 1.52
3583 5459 7.382898 GGAACAACCAAATTGAGCCTTATAAA 58.617 34.615 0.00 0.00 41.23 1.40
3584 5460 6.071051 GGGAACAACCAAATTGAGCCTTATAA 60.071 38.462 0.00 0.00 41.23 0.98
3585 5461 5.420739 GGGAACAACCAAATTGAGCCTTATA 59.579 40.000 0.00 0.00 41.23 0.98
3586 5462 4.222810 GGGAACAACCAAATTGAGCCTTAT 59.777 41.667 0.00 0.00 41.23 1.73
3587 5463 3.576550 GGGAACAACCAAATTGAGCCTTA 59.423 43.478 0.00 0.00 41.23 2.69
3588 5464 2.368548 GGGAACAACCAAATTGAGCCTT 59.631 45.455 0.00 0.00 41.23 4.35
3589 5465 1.970640 GGGAACAACCAAATTGAGCCT 59.029 47.619 0.00 0.00 41.23 4.58
3590 5466 1.001974 GGGGAACAACCAAATTGAGCC 59.998 52.381 0.00 0.00 41.23 4.70
3591 5467 1.691434 TGGGGAACAACCAAATTGAGC 59.309 47.619 0.00 0.00 41.23 4.26
3592 5468 3.577848 TGATGGGGAACAACCAAATTGAG 59.422 43.478 0.00 0.00 42.17 3.02
3593 5469 3.323403 GTGATGGGGAACAACCAAATTGA 59.677 43.478 0.00 0.00 42.17 2.57
3594 5470 3.070734 TGTGATGGGGAACAACCAAATTG 59.929 43.478 0.00 0.00 42.17 2.32
3595 5471 3.312890 TGTGATGGGGAACAACCAAATT 58.687 40.909 0.00 0.00 42.17 1.82
3596 5472 2.969628 TGTGATGGGGAACAACCAAAT 58.030 42.857 0.00 0.00 42.17 2.32
3597 5473 2.461300 TGTGATGGGGAACAACCAAA 57.539 45.000 0.00 0.00 42.17 3.28
3598 5474 2.246469 CATGTGATGGGGAACAACCAA 58.754 47.619 0.00 0.00 42.17 3.67
3599 5475 1.146774 ACATGTGATGGGGAACAACCA 59.853 47.619 0.00 0.00 43.22 3.67
3600 5476 1.923356 ACATGTGATGGGGAACAACC 58.077 50.000 0.00 0.00 38.08 3.77
3601 5477 2.890311 TGAACATGTGATGGGGAACAAC 59.110 45.455 0.00 0.00 33.60 3.32
3602 5478 3.156293 CTGAACATGTGATGGGGAACAA 58.844 45.455 0.00 0.00 33.60 2.83
3603 5479 2.374839 TCTGAACATGTGATGGGGAACA 59.625 45.455 0.00 0.00 33.60 3.18
3604 5480 2.749621 GTCTGAACATGTGATGGGGAAC 59.250 50.000 0.00 0.00 33.60 3.62
3605 5481 2.644299 AGTCTGAACATGTGATGGGGAA 59.356 45.455 0.00 0.00 33.60 3.97
3606 5482 2.269023 AGTCTGAACATGTGATGGGGA 58.731 47.619 0.00 0.00 33.60 4.81
3607 5483 2.795231 AGTCTGAACATGTGATGGGG 57.205 50.000 0.00 0.00 33.60 4.96
3608 5484 3.678289 TGAAGTCTGAACATGTGATGGG 58.322 45.455 0.00 0.00 33.60 4.00
3609 5485 4.155462 CCTTGAAGTCTGAACATGTGATGG 59.845 45.833 0.00 0.00 33.60 3.51
3610 5486 4.758674 ACCTTGAAGTCTGAACATGTGATG 59.241 41.667 0.00 0.00 0.00 3.07
3611 5487 4.758674 CACCTTGAAGTCTGAACATGTGAT 59.241 41.667 0.00 0.00 0.00 3.06
3612 5488 4.129380 CACCTTGAAGTCTGAACATGTGA 58.871 43.478 0.00 0.00 0.00 3.58
3613 5489 3.304257 GCACCTTGAAGTCTGAACATGTG 60.304 47.826 0.00 0.00 0.00 3.21
3614 5490 2.880890 GCACCTTGAAGTCTGAACATGT 59.119 45.455 0.00 0.00 0.00 3.21
3615 5491 2.880268 TGCACCTTGAAGTCTGAACATG 59.120 45.455 0.00 0.00 0.00 3.21
3616 5492 3.213206 TGCACCTTGAAGTCTGAACAT 57.787 42.857 0.00 0.00 0.00 2.71
3617 5493 2.708216 TGCACCTTGAAGTCTGAACA 57.292 45.000 0.00 0.00 0.00 3.18
3618 5494 5.689383 TTAATGCACCTTGAAGTCTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
3619 5495 6.489700 TGATTTAATGCACCTTGAAGTCTGAA 59.510 34.615 0.00 0.00 0.00 3.02
3620 5496 6.003326 TGATTTAATGCACCTTGAAGTCTGA 58.997 36.000 0.00 0.00 0.00 3.27
3621 5497 6.258230 TGATTTAATGCACCTTGAAGTCTG 57.742 37.500 0.00 0.00 0.00 3.51
3622 5498 7.318141 CAATGATTTAATGCACCTTGAAGTCT 58.682 34.615 0.00 0.00 0.00 3.24
3623 5499 6.035327 GCAATGATTTAATGCACCTTGAAGTC 59.965 38.462 0.00 0.00 39.81 3.01
3624 5500 5.870978 GCAATGATTTAATGCACCTTGAAGT 59.129 36.000 0.00 0.00 39.81 3.01
3625 5501 5.870433 TGCAATGATTTAATGCACCTTGAAG 59.130 36.000 0.00 0.00 44.52 3.02
3626 5502 5.791666 TGCAATGATTTAATGCACCTTGAA 58.208 33.333 0.00 0.00 44.52 2.69
3627 5503 5.402997 TGCAATGATTTAATGCACCTTGA 57.597 34.783 0.00 0.00 44.52 3.02
3664 5540 5.303747 CATGCATGCATTGGTCAATTTTT 57.696 34.783 30.32 2.79 33.90 1.94
3665 5541 4.955925 CATGCATGCATTGGTCAATTTT 57.044 36.364 30.32 3.02 33.90 1.82
3717 5593 9.612066 AATTAATGCTCTTGTTTTCCTCAAAAA 57.388 25.926 0.00 0.00 33.17 1.94
3718 5594 9.044150 CAATTAATGCTCTTGTTTTCCTCAAAA 57.956 29.630 0.00 0.00 0.00 2.44
3719 5595 7.656948 CCAATTAATGCTCTTGTTTTCCTCAAA 59.343 33.333 0.00 0.00 0.00 2.69
3720 5596 7.153985 CCAATTAATGCTCTTGTTTTCCTCAA 58.846 34.615 0.00 0.00 0.00 3.02
3721 5597 6.295236 CCCAATTAATGCTCTTGTTTTCCTCA 60.295 38.462 0.00 0.00 0.00 3.86
3722 5598 6.101997 CCCAATTAATGCTCTTGTTTTCCTC 58.898 40.000 0.00 0.00 0.00 3.71
3723 5599 5.543790 ACCCAATTAATGCTCTTGTTTTCCT 59.456 36.000 0.00 0.00 0.00 3.36
3724 5600 5.639082 CACCCAATTAATGCTCTTGTTTTCC 59.361 40.000 0.00 0.00 0.00 3.13
3725 5601 5.120674 GCACCCAATTAATGCTCTTGTTTTC 59.879 40.000 0.00 0.00 36.40 2.29
3726 5602 4.996758 GCACCCAATTAATGCTCTTGTTTT 59.003 37.500 0.00 0.00 36.40 2.43
3727 5603 4.284234 AGCACCCAATTAATGCTCTTGTTT 59.716 37.500 4.81 0.00 46.68 2.83
3728 5604 3.834231 AGCACCCAATTAATGCTCTTGTT 59.166 39.130 4.81 0.00 46.68 2.83
3729 5605 3.434309 AGCACCCAATTAATGCTCTTGT 58.566 40.909 4.81 0.00 46.68 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.