Multiple sequence alignment - TraesCS1A01G156600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G156600 chr1A 100.000 5822 0 0 1 5822 278140903 278146724 0.000000e+00 10752.0
1 TraesCS1A01G156600 chr1B 89.923 5974 338 109 1 5803 310926073 310931953 0.000000e+00 7454.0
2 TraesCS1A01G156600 chr1D 91.873 2670 101 39 1 2624 217141995 217144594 0.000000e+00 3622.0
3 TraesCS1A01G156600 chr1D 91.585 2258 149 17 2611 4829 217144610 217146865 0.000000e+00 3079.0
4 TraesCS1A01G156600 chr1D 82.454 1043 64 53 4782 5771 217146864 217147840 0.000000e+00 802.0
5 TraesCS1A01G156600 chr7D 81.453 647 89 20 1025 1669 556120969 556121586 8.710000e-138 501.0
6 TraesCS1A01G156600 chr7D 86.842 76 10 0 3953 4028 556122445 556122520 1.040000e-12 86.1
7 TraesCS1A01G156600 chr7B 81.356 649 89 25 1025 1669 602938414 602939034 3.130000e-137 499.0
8 TraesCS1A01G156600 chr7B 86.842 76 10 0 3953 4028 602939910 602939985 1.040000e-12 86.1
9 TraesCS1A01G156600 chr7A 81.231 650 94 22 1025 1669 641581297 641580671 3.130000e-137 499.0
10 TraesCS1A01G156600 chr7A 88.158 76 9 0 3953 4028 641579801 641579726 2.230000e-14 91.6
11 TraesCS1A01G156600 chr6A 77.794 680 117 27 1012 1683 415907638 415906985 7.070000e-104 388.0
12 TraesCS1A01G156600 chr2D 80.388 515 88 11 1177 1682 480778479 480777969 4.260000e-101 379.0
13 TraesCS1A01G156600 chr2A 77.644 662 107 31 1031 1682 623564684 623564054 1.190000e-96 364.0
14 TraesCS1A01G156600 chr2B 80.467 471 79 10 1220 1682 563923866 563923401 1.200000e-91 348.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G156600 chr1A 278140903 278146724 5821 False 10752.00 10752 100.000000 1 5822 1 chr1A.!!$F1 5821
1 TraesCS1A01G156600 chr1B 310926073 310931953 5880 False 7454.00 7454 89.923000 1 5803 1 chr1B.!!$F1 5802
2 TraesCS1A01G156600 chr1D 217141995 217147840 5845 False 2501.00 3622 88.637333 1 5771 3 chr1D.!!$F1 5770
3 TraesCS1A01G156600 chr7D 556120969 556122520 1551 False 293.55 501 84.147500 1025 4028 2 chr7D.!!$F1 3003
4 TraesCS1A01G156600 chr7B 602938414 602939985 1571 False 292.55 499 84.099000 1025 4028 2 chr7B.!!$F1 3003
5 TraesCS1A01G156600 chr7A 641579726 641581297 1571 True 295.30 499 84.694500 1025 4028 2 chr7A.!!$R1 3003
6 TraesCS1A01G156600 chr6A 415906985 415907638 653 True 388.00 388 77.794000 1012 1683 1 chr6A.!!$R1 671
7 TraesCS1A01G156600 chr2D 480777969 480778479 510 True 379.00 379 80.388000 1177 1682 1 chr2D.!!$R1 505
8 TraesCS1A01G156600 chr2A 623564054 623564684 630 True 364.00 364 77.644000 1031 1682 1 chr2A.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1031 0.031449 ATTTCGTGGCGGTGGTTTTG 59.969 50.000 0.00 0.00 0.00 2.44 F
2180 2313 1.471119 CTGCAAGGGATGAATGCAGT 58.529 50.000 16.55 0.00 45.39 4.40 F
3068 3259 1.211457 AGGGCTCCATGCTAGTTCTTG 59.789 52.381 0.00 0.00 42.39 3.02 F
4562 4805 0.169672 ATCTCCGTTACCGTGACACG 59.830 55.000 21.02 21.02 42.11 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2398 0.249996 GCAAGCTGGCCATGTTTTGT 60.250 50.0 5.51 0.0 0.00 2.83 R
4127 4370 0.104855 ACAAGCAAGAGACGCTGTCA 59.895 50.0 10.52 0.0 40.35 3.58 R
4779 5026 0.108615 CGATGAGAGGTTTCGCCAGT 60.109 55.0 0.00 0.0 40.61 4.00 R
5424 5768 0.099613 CTCACGGTCACGGAGAGATG 59.900 60.0 4.05 0.0 44.10 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 65 2.010817 CCAACAAAACGCTGCGAGC 61.011 57.895 30.47 0.00 38.02 5.03
126 133 7.550551 TCTGAGATAATCTAGCTGTTTTGTTGG 59.449 37.037 0.00 0.00 0.00 3.77
177 184 9.567848 TTCAGATTCAGAAACACTAAAAACAAC 57.432 29.630 0.00 0.00 0.00 3.32
325 347 1.359848 CAGTCATCTACGGTTGGTGC 58.640 55.000 0.00 0.00 0.00 5.01
370 392 4.864334 GCAGGCGATCTGGTGGGG 62.864 72.222 8.03 0.00 43.54 4.96
428 450 3.020984 CGAAGCTCTCCCCTATCTATCC 58.979 54.545 0.00 0.00 0.00 2.59
430 452 4.619679 GAAGCTCTCCCCTATCTATCCAT 58.380 47.826 0.00 0.00 0.00 3.41
535 569 2.123640 CCTCCTCGTCCTCCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
536 570 2.123640 CTCCTCGTCCTCCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
537 571 2.617538 TCCTCGTCCTCCCTCCCT 60.618 66.667 0.00 0.00 0.00 4.20
538 572 2.123640 CCTCGTCCTCCCTCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
539 573 2.695970 CCTCGTCCTCCCTCCCTCT 61.696 68.421 0.00 0.00 0.00 3.69
540 574 1.152839 CTCGTCCTCCCTCCCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
541 575 1.619975 TCGTCCTCCCTCCCTCTCT 60.620 63.158 0.00 0.00 0.00 3.10
542 576 1.152839 CGTCCTCCCTCCCTCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
712 751 4.399303 CGCCTGATGTAGATTTCCCTTTTT 59.601 41.667 0.00 0.00 0.00 1.94
737 776 6.521162 TCCTTTCCTTTGCTTTGTTTATTCC 58.479 36.000 0.00 0.00 0.00 3.01
834 873 2.431782 TGCTTGCCTTTCTTGCTTTTCT 59.568 40.909 0.00 0.00 0.00 2.52
861 900 3.598019 TGATTTGCTCTTTTGATGGCC 57.402 42.857 0.00 0.00 0.00 5.36
900 939 1.358759 GCGTGTGGAGTTGGGTTTG 59.641 57.895 0.00 0.00 0.00 2.93
902 941 1.101049 CGTGTGGAGTTGGGTTTGCT 61.101 55.000 0.00 0.00 0.00 3.91
903 942 0.385390 GTGTGGAGTTGGGTTTGCTG 59.615 55.000 0.00 0.00 0.00 4.41
905 944 0.385390 GTGGAGTTGGGTTTGCTGTG 59.615 55.000 0.00 0.00 0.00 3.66
906 945 1.363807 GGAGTTGGGTTTGCTGTGC 59.636 57.895 0.00 0.00 0.00 4.57
908 947 2.027460 GTTGGGTTTGCTGTGCGG 59.973 61.111 0.00 0.00 0.00 5.69
909 948 2.441164 TTGGGTTTGCTGTGCGGT 60.441 55.556 0.00 0.00 0.00 5.68
925 964 1.668628 GCGGTGGTTTGCGAATTTGAT 60.669 47.619 0.00 0.00 0.00 2.57
951 990 1.881591 CAATTTGGTGGCAGGTTTGG 58.118 50.000 0.00 0.00 0.00 3.28
979 1018 2.673368 GGAAGAAGTGATCGCATTTCGT 59.327 45.455 9.33 2.85 43.25 3.85
992 1031 0.031449 ATTTCGTGGCGGTGGTTTTG 59.969 50.000 0.00 0.00 0.00 2.44
1079 1118 2.827190 CATGGTGCAGATGCCGCT 60.827 61.111 1.72 0.00 41.18 5.52
2111 2243 7.766283 TGTTCGATCTGATGATATCCATAGTC 58.234 38.462 0.00 0.00 35.17 2.59
2169 2302 3.091545 ACATAACATGGAACTGCAAGGG 58.908 45.455 0.00 0.00 33.70 3.95
2180 2313 1.471119 CTGCAAGGGATGAATGCAGT 58.529 50.000 16.55 0.00 45.39 4.40
2197 2330 2.910482 GCAGTGCATCATTTACACAACG 59.090 45.455 11.09 0.00 36.76 4.10
2198 2331 3.609175 GCAGTGCATCATTTACACAACGT 60.609 43.478 11.09 0.00 36.76 3.99
2199 2332 4.536065 CAGTGCATCATTTACACAACGTT 58.464 39.130 0.00 0.00 36.76 3.99
2200 2333 5.684850 CAGTGCATCATTTACACAACGTTA 58.315 37.500 0.00 0.00 36.76 3.18
2201 2334 5.790003 CAGTGCATCATTTACACAACGTTAG 59.210 40.000 0.00 0.00 36.76 2.34
2202 2335 5.468746 AGTGCATCATTTACACAACGTTAGT 59.531 36.000 0.00 5.59 36.76 2.24
2203 2336 6.647481 AGTGCATCATTTACACAACGTTAGTA 59.353 34.615 0.00 4.50 36.76 1.82
2204 2337 6.953743 GTGCATCATTTACACAACGTTAGTAG 59.046 38.462 0.00 0.00 34.43 2.57
2205 2338 6.647481 TGCATCATTTACACAACGTTAGTAGT 59.353 34.615 0.00 0.00 0.00 2.73
2206 2339 7.813627 TGCATCATTTACACAACGTTAGTAGTA 59.186 33.333 0.00 0.00 0.00 1.82
2207 2340 8.814235 GCATCATTTACACAACGTTAGTAGTAT 58.186 33.333 0.00 2.88 0.00 2.12
2209 2342 8.692110 TCATTTACACAACGTTAGTAGTATGG 57.308 34.615 21.13 6.32 0.00 2.74
2210 2343 8.522003 TCATTTACACAACGTTAGTAGTATGGA 58.478 33.333 21.13 12.31 0.00 3.41
2211 2344 8.804743 CATTTACACAACGTTAGTAGTATGGAG 58.195 37.037 0.00 0.00 0.00 3.86
2212 2345 5.320549 ACACAACGTTAGTAGTATGGAGG 57.679 43.478 0.00 0.00 0.00 4.30
2238 2371 4.080186 TCTCATTCAGATGCCTTGAATGGA 60.080 41.667 23.38 18.71 45.15 3.41
2240 2373 4.400251 TCATTCAGATGCCTTGAATGGAAC 59.600 41.667 23.38 0.00 45.15 3.62
2244 2377 4.471025 TCAGATGCCTTGAATGGAACTAGA 59.529 41.667 0.00 0.00 0.00 2.43
2259 2395 7.709149 TGGAACTAGAAGTTAAGGTACTACC 57.291 40.000 0.00 0.00 38.80 3.18
2261 2397 7.897565 TGGAACTAGAAGTTAAGGTACTACCAT 59.102 37.037 8.01 0.00 38.62 3.55
2262 2398 9.413734 GGAACTAGAAGTTAAGGTACTACCATA 57.586 37.037 8.01 0.00 38.62 2.74
2272 2411 8.671028 GTTAAGGTACTACCATACAAAACATGG 58.329 37.037 8.01 0.00 43.73 3.66
2280 2419 3.255725 CATACAAAACATGGCCAGCTTG 58.744 45.455 13.05 13.78 0.00 4.01
2302 2441 2.667481 CCGCACAATGTTGCCAAATTAG 59.333 45.455 3.08 0.00 39.53 1.73
2308 2447 7.087639 GCACAATGTTGCCAAATTAGTAGTAA 58.912 34.615 0.00 0.00 36.42 2.24
2350 2493 5.189539 CCCAAACCCCTGATATCAACAAATT 59.810 40.000 6.90 0.00 0.00 1.82
2352 2495 7.093112 CCCAAACCCCTGATATCAACAAATTAA 60.093 37.037 6.90 0.00 0.00 1.40
2378 2521 7.888546 ACCTATTAATTAGTTCAACAACTGGCT 59.111 33.333 0.00 0.00 43.17 4.75
2418 2561 4.494091 ACATCACATCCTCCTTCGATTT 57.506 40.909 0.00 0.00 0.00 2.17
2435 2582 8.853345 CCTTCGATTTTGACTTTGTATGAATTG 58.147 33.333 0.00 0.00 0.00 2.32
2440 2587 6.723298 TTTGACTTTGTATGAATTGGTGGT 57.277 33.333 0.00 0.00 0.00 4.16
2460 2607 6.092748 GTGGTACAATCAATAAAGCTGTTGG 58.907 40.000 0.00 0.00 44.16 3.77
2462 2609 6.491745 TGGTACAATCAATAAAGCTGTTGGAA 59.508 34.615 0.00 0.00 31.92 3.53
2463 2610 7.178274 TGGTACAATCAATAAAGCTGTTGGAAT 59.822 33.333 0.00 0.00 31.92 3.01
2464 2611 7.489113 GGTACAATCAATAAAGCTGTTGGAATG 59.511 37.037 0.00 0.00 0.00 2.67
2467 2614 5.063180 TCAATAAAGCTGTTGGAATGCAG 57.937 39.130 0.00 0.00 35.93 4.41
2477 2624 4.619973 TGTTGGAATGCAGAATTCACAAC 58.380 39.130 19.35 19.35 45.69 3.32
2526 2679 4.699925 TGTGGTCCTTTAGTAGCTTTGT 57.300 40.909 0.00 0.00 0.00 2.83
2565 2718 5.819379 GGATTATCAGTCTGCATGTTCTTCA 59.181 40.000 0.00 0.00 0.00 3.02
2567 2720 6.732531 TTATCAGTCTGCATGTTCTTCAAG 57.267 37.500 0.00 0.00 0.00 3.02
2568 2721 4.077300 TCAGTCTGCATGTTCTTCAAGT 57.923 40.909 0.00 0.00 0.00 3.16
2569 2722 5.213891 TCAGTCTGCATGTTCTTCAAGTA 57.786 39.130 0.00 0.00 0.00 2.24
2570 2723 4.991056 TCAGTCTGCATGTTCTTCAAGTAC 59.009 41.667 0.00 0.00 0.00 2.73
2581 2734 7.997773 TGTTCTTCAAGTACTAGCTCTCTTA 57.002 36.000 0.00 0.00 0.00 2.10
2608 2761 5.099042 TCAATAGTGGGCTCCTAAACTTC 57.901 43.478 0.00 0.00 0.00 3.01
2609 2762 4.080526 TCAATAGTGGGCTCCTAAACTTCC 60.081 45.833 0.00 0.00 0.00 3.46
2704 2889 2.691011 GTTTGGTCTTTAGCACCCAACA 59.309 45.455 3.13 0.00 38.73 3.33
2708 2893 3.245229 TGGTCTTTAGCACCCAACATGAT 60.245 43.478 0.00 0.00 32.24 2.45
2709 2894 4.018870 TGGTCTTTAGCACCCAACATGATA 60.019 41.667 0.00 0.00 32.24 2.15
2724 2915 5.323382 ACATGATACTTGGCATGGGAATA 57.677 39.130 0.00 0.00 44.64 1.75
2755 2946 9.181805 GCAAACTTTTAACTAGAAACAGAATCC 57.818 33.333 0.00 0.00 0.00 3.01
2770 2961 5.440610 ACAGAATCCTTTAGCATGGTTAGG 58.559 41.667 15.85 15.85 0.00 2.69
2772 2963 6.157994 ACAGAATCCTTTAGCATGGTTAGGTA 59.842 38.462 19.32 10.73 0.00 3.08
2783 2974 6.291377 AGCATGGTTAGGTATGACTAATGTG 58.709 40.000 0.00 0.00 35.57 3.21
2792 2983 7.437713 AGGTATGACTAATGTGGATGAGAAA 57.562 36.000 0.00 0.00 0.00 2.52
2794 2985 6.201044 GGTATGACTAATGTGGATGAGAAACG 59.799 42.308 0.00 0.00 0.00 3.60
2819 3010 7.279981 CGATTTGTCTAATTACATTGACCTGGA 59.720 37.037 0.00 0.00 0.00 3.86
2821 3012 7.681939 TTGTCTAATTACATTGACCTGGAAC 57.318 36.000 0.00 0.00 0.00 3.62
2878 3069 3.985925 CGTACACAGTAGAAGGGTCAAAC 59.014 47.826 0.00 0.00 0.00 2.93
2887 3078 8.434392 ACAGTAGAAGGGTCAAACTTTTATGTA 58.566 33.333 0.00 0.00 0.00 2.29
2928 3119 5.123502 ACATCATCTGTCAGATTTGTTCAGC 59.876 40.000 12.88 0.00 31.32 4.26
2935 3126 5.371526 TGTCAGATTTGTTCAGCTTCTCTT 58.628 37.500 0.00 0.00 0.00 2.85
2947 3138 5.869579 TCAGCTTCTCTTATGGAAGTTGTT 58.130 37.500 15.74 0.00 45.53 2.83
2949 3140 4.932200 AGCTTCTCTTATGGAAGTTGTTCG 59.068 41.667 0.00 0.00 41.36 3.95
3019 3210 2.143925 GCCAACAGCTTCGTTTCTAGT 58.856 47.619 0.00 0.00 38.99 2.57
3028 3219 4.989168 AGCTTCGTTTCTAGTCATTCGTTT 59.011 37.500 0.00 0.00 0.00 3.60
3068 3259 1.211457 AGGGCTCCATGCTAGTTCTTG 59.789 52.381 0.00 0.00 42.39 3.02
3116 3323 5.768317 ACAAATCCAATAAAGTTCGGTGTG 58.232 37.500 0.00 0.00 0.00 3.82
3128 3338 2.309528 TCGGTGTGGAATACTGCATC 57.690 50.000 0.00 0.00 33.89 3.91
3129 3339 1.831106 TCGGTGTGGAATACTGCATCT 59.169 47.619 0.00 0.00 33.89 2.90
3135 3345 6.346096 GGTGTGGAATACTGCATCTTTACTA 58.654 40.000 0.00 0.00 0.00 1.82
3164 3387 2.025155 ACCTGATGCTGGTACTACGAG 58.975 52.381 0.00 0.00 33.97 4.18
3172 3395 7.948357 TGATGCTGGTACTACGAGTATTAAAT 58.052 34.615 3.85 0.00 30.41 1.40
3203 3426 7.197071 TGTGGGTATTGAATTAATATGACGC 57.803 36.000 0.00 0.00 33.99 5.19
3226 3452 6.047870 GCTCATGTAGTATGATGATGATCCC 58.952 44.000 0.00 0.00 0.00 3.85
3240 3466 7.933577 TGATGATGATCCCTGTATAAACTGTTC 59.066 37.037 0.00 0.00 0.00 3.18
3245 3471 3.259876 TCCCTGTATAAACTGTTCGTGCT 59.740 43.478 0.00 0.00 0.00 4.40
3253 3479 2.150397 ACTGTTCGTGCTGAAGGTAC 57.850 50.000 0.00 0.00 37.23 3.34
3348 3575 4.562963 GGTTTCTGTCTGTACCTTGGGTAG 60.563 50.000 0.00 0.00 39.02 3.18
3393 3628 3.573538 TGGCAGTTCAACATAACATGCTT 59.426 39.130 0.00 0.00 35.59 3.91
3395 3630 3.922240 GCAGTTCAACATAACATGCTTGG 59.078 43.478 4.44 0.00 34.01 3.61
3401 3636 7.394359 AGTTCAACATAACATGCTTGGTCTATT 59.606 33.333 4.44 0.00 0.00 1.73
3452 3687 6.432936 CGTTCATGCATATTGCTACTTCATT 58.567 36.000 0.00 0.00 45.31 2.57
3483 3718 5.217978 TCTCAACGTTTATGTTACCCACT 57.782 39.130 0.00 0.00 0.00 4.00
3500 3735 5.206587 ACCCACTTACGTAGGATAGTGAAT 58.793 41.667 21.28 9.75 40.24 2.57
3502 3737 5.301045 CCCACTTACGTAGGATAGTGAATGA 59.699 44.000 21.28 0.00 40.24 2.57
3509 3744 7.113658 ACGTAGGATAGTGAATGATGTCTTT 57.886 36.000 0.00 0.00 0.00 2.52
3516 3751 9.906660 GGATAGTGAATGATGTCTTTCTAGTAG 57.093 37.037 9.24 0.00 32.96 2.57
3535 3770 6.532988 AGTAGTTTTGAGATAGTGGAGGTC 57.467 41.667 0.00 0.00 0.00 3.85
3549 3784 5.738909 AGTGGAGGTCTATGTTTTCATCAG 58.261 41.667 0.00 0.00 41.25 2.90
3556 3791 9.553064 GAGGTCTATGTTTTCATCAGTATCATT 57.447 33.333 0.00 0.00 41.25 2.57
3591 3828 7.798516 CAGATTTAATACGAAAATGGGTCATCG 59.201 37.037 0.00 0.00 40.90 3.84
3610 3847 4.217754 TCGATTTTAGTTGGTGTTGTGC 57.782 40.909 0.00 0.00 0.00 4.57
3632 3869 4.554973 GCTACTTTGCGCATTTTAGTTCTG 59.445 41.667 12.75 7.87 0.00 3.02
3704 3941 3.465871 AACATGGTTCATGGTTGCAAAC 58.534 40.909 7.78 7.78 38.83 2.93
3743 3980 3.559171 GGGATGAGCCAGACTTGTTACAA 60.559 47.826 0.00 0.00 38.95 2.41
4262 4505 5.485620 CAGATGACTTCAAGTGGATCAAGA 58.514 41.667 0.00 0.00 0.00 3.02
4312 4555 6.702282 GGAAATAGTTCACCTATCAGTACTGC 59.298 42.308 18.45 0.65 35.22 4.40
4316 4559 1.676529 TCACCTATCAGTACTGCGCTC 59.323 52.381 18.45 0.00 0.00 5.03
4343 4586 1.338020 GGAAATGCATCCGATGGTTCC 59.662 52.381 10.41 3.81 0.00 3.62
4361 4604 2.564771 TCCGGTTCATCAATCTGCATC 58.435 47.619 0.00 0.00 0.00 3.91
4394 4637 1.489649 CAGGGTCATGAGGCTTCTGAT 59.510 52.381 0.00 0.00 0.00 2.90
4472 4715 2.989840 CACCATCGACTTGTCTGTCTTC 59.010 50.000 0.00 0.00 35.00 2.87
4517 4760 0.242017 GTCTGGCTGACATGTTTGGC 59.758 55.000 18.29 15.32 44.73 4.52
4526 4769 3.145286 TGACATGTTTGGCATCGAGAAA 58.855 40.909 0.00 0.00 35.35 2.52
4547 4790 8.449251 AGAAAGAAGAAATCATAAGCCATCTC 57.551 34.615 0.00 0.00 0.00 2.75
4562 4805 0.169672 ATCTCCGTTACCGTGACACG 59.830 55.000 21.02 21.02 42.11 4.49
4586 4829 1.148949 TGCTGTCATGCACACTGGT 59.851 52.632 0.00 0.00 38.12 4.00
4614 4857 1.337260 CGTTCAGGTGAGAAGTCCCTG 60.337 57.143 0.00 0.00 40.18 4.45
4617 4860 2.182827 TCAGGTGAGAAGTCCCTGATG 58.817 52.381 3.57 0.00 41.53 3.07
4623 4866 4.346418 GGTGAGAAGTCCCTGATGATATGT 59.654 45.833 0.00 0.00 0.00 2.29
4624 4867 5.295950 GTGAGAAGTCCCTGATGATATGTG 58.704 45.833 0.00 0.00 0.00 3.21
4633 4876 4.940046 CCCTGATGATATGTGCAGTATTCC 59.060 45.833 0.00 0.00 0.00 3.01
4643 4886 4.242475 TGTGCAGTATTCCTTAACTCGTG 58.758 43.478 0.00 0.00 0.00 4.35
4644 4887 3.062234 GTGCAGTATTCCTTAACTCGTGC 59.938 47.826 0.00 0.00 0.00 5.34
4645 4888 2.281762 GCAGTATTCCTTAACTCGTGCG 59.718 50.000 0.00 0.00 0.00 5.34
4646 4889 3.508762 CAGTATTCCTTAACTCGTGCGT 58.491 45.455 0.00 0.00 0.00 5.24
4647 4890 3.303495 CAGTATTCCTTAACTCGTGCGTG 59.697 47.826 0.00 0.00 0.00 5.34
4648 4891 2.736144 ATTCCTTAACTCGTGCGTGA 57.264 45.000 0.60 0.00 0.00 4.35
4649 4892 2.736144 TTCCTTAACTCGTGCGTGAT 57.264 45.000 0.60 0.00 0.00 3.06
4650 4893 3.853831 TTCCTTAACTCGTGCGTGATA 57.146 42.857 0.60 0.00 0.00 2.15
4652 4895 4.380841 TCCTTAACTCGTGCGTGATAAT 57.619 40.909 0.60 0.00 0.00 1.28
4653 4896 5.503662 TCCTTAACTCGTGCGTGATAATA 57.496 39.130 0.60 0.00 0.00 0.98
4668 4915 8.363390 TGCGTGATAATATCTTCTTCATCTTCT 58.637 33.333 1.66 0.00 0.00 2.85
4696 4943 7.973601 TGTTGCAGTAATGTTGTAGTGATATG 58.026 34.615 0.00 0.00 0.00 1.78
4699 4946 8.642908 TGCAGTAATGTTGTAGTGATATGTAC 57.357 34.615 0.00 0.00 0.00 2.90
4779 5026 1.354101 TAAGTGGCGAAAAGGGAGGA 58.646 50.000 0.00 0.00 0.00 3.71
4842 5133 2.328819 ATCTTGATGAGCTCCAGCAC 57.671 50.000 12.15 0.00 41.42 4.40
4875 5167 8.759641 CATCGAGAAATATTAAACCAGAGTGAG 58.240 37.037 0.00 0.00 0.00 3.51
5069 5371 2.035442 GGCGGCTGAGTTGGAAGTC 61.035 63.158 0.00 0.00 0.00 3.01
5071 5373 0.246635 GCGGCTGAGTTGGAAGTCTA 59.753 55.000 0.00 0.00 0.00 2.59
5074 5376 3.797184 GCGGCTGAGTTGGAAGTCTATAG 60.797 52.174 0.00 0.00 0.00 1.31
5075 5377 3.243569 CGGCTGAGTTGGAAGTCTATAGG 60.244 52.174 0.00 0.00 0.00 2.57
5079 5381 5.069781 GCTGAGTTGGAAGTCTATAGGTCAT 59.930 44.000 0.00 0.00 0.00 3.06
5080 5382 6.471233 TGAGTTGGAAGTCTATAGGTCATG 57.529 41.667 0.00 0.00 0.00 3.07
5081 5383 6.194967 TGAGTTGGAAGTCTATAGGTCATGA 58.805 40.000 0.00 0.00 0.00 3.07
5082 5384 6.322456 TGAGTTGGAAGTCTATAGGTCATGAG 59.678 42.308 0.00 0.00 0.00 2.90
5083 5385 5.600484 AGTTGGAAGTCTATAGGTCATGAGG 59.400 44.000 0.00 0.00 0.00 3.86
5085 5387 4.156477 GGAAGTCTATAGGTCATGAGGCT 58.844 47.826 0.00 0.00 0.00 4.58
5086 5388 4.591072 GGAAGTCTATAGGTCATGAGGCTT 59.409 45.833 0.00 0.00 36.59 4.35
5087 5389 5.279256 GGAAGTCTATAGGTCATGAGGCTTC 60.279 48.000 13.52 13.52 45.65 3.86
5088 5390 5.073437 AGTCTATAGGTCATGAGGCTTCT 57.927 43.478 0.00 0.00 0.00 2.85
5089 5391 4.832266 AGTCTATAGGTCATGAGGCTTCTG 59.168 45.833 0.00 0.00 0.00 3.02
5090 5392 4.830046 GTCTATAGGTCATGAGGCTTCTGA 59.170 45.833 0.00 0.00 0.00 3.27
5156 5468 3.572255 TCTTTGGAAATTAAAGCTGGCGT 59.428 39.130 0.00 0.00 35.61 5.68
5176 5488 1.440476 GCCTGGGCAGATGAAATGC 59.560 57.895 6.75 0.00 43.09 3.56
5183 5495 2.372264 GGCAGATGAAATGCTTGAGGA 58.628 47.619 0.00 0.00 43.35 3.71
5184 5496 2.957006 GGCAGATGAAATGCTTGAGGAT 59.043 45.455 0.00 0.00 43.35 3.24
5185 5497 3.383825 GGCAGATGAAATGCTTGAGGATT 59.616 43.478 0.00 0.00 43.35 3.01
5186 5498 4.581824 GGCAGATGAAATGCTTGAGGATTA 59.418 41.667 0.00 0.00 43.35 1.75
5187 5499 5.278364 GGCAGATGAAATGCTTGAGGATTAG 60.278 44.000 0.00 0.00 43.35 1.73
5188 5500 5.530171 GCAGATGAAATGCTTGAGGATTAGA 59.470 40.000 0.00 0.00 40.59 2.10
5189 5501 6.293516 GCAGATGAAATGCTTGAGGATTAGAG 60.294 42.308 0.00 0.00 40.59 2.43
5190 5502 5.764192 AGATGAAATGCTTGAGGATTAGAGC 59.236 40.000 0.00 0.00 34.94 4.09
5191 5503 3.873361 TGAAATGCTTGAGGATTAGAGCG 59.127 43.478 0.00 0.00 34.94 5.03
5192 5504 1.876322 ATGCTTGAGGATTAGAGCGC 58.124 50.000 0.00 0.00 37.94 5.92
5208 5520 3.932710 AGAGCGCGTTTGATGAGAATTTA 59.067 39.130 8.43 0.00 0.00 1.40
5267 5579 6.165577 ACATTATTTCTTGGCCATTGTTGTC 58.834 36.000 6.09 0.00 0.00 3.18
5268 5580 2.791383 TTTCTTGGCCATTGTTGTCG 57.209 45.000 6.09 0.00 0.00 4.35
5271 5583 0.387622 CTTGGCCATTGTTGTCGCTG 60.388 55.000 6.09 0.00 0.00 5.18
5274 5586 0.664166 GGCCATTGTTGTCGCTGTTG 60.664 55.000 0.00 0.00 0.00 3.33
5277 5589 1.122849 CATTGTTGTCGCTGTTGTGC 58.877 50.000 0.00 0.00 0.00 4.57
5278 5590 1.024271 ATTGTTGTCGCTGTTGTGCT 58.976 45.000 0.00 0.00 0.00 4.40
5281 5593 1.201181 TGTTGTCGCTGTTGTGCTTTT 59.799 42.857 0.00 0.00 0.00 2.27
5283 5595 1.906757 TGTCGCTGTTGTGCTTTTTG 58.093 45.000 0.00 0.00 0.00 2.44
5284 5596 0.572125 GTCGCTGTTGTGCTTTTTGC 59.428 50.000 0.00 0.00 43.25 3.68
5285 5597 0.527385 TCGCTGTTGTGCTTTTTGCC 60.527 50.000 0.00 0.00 42.00 4.52
5287 5599 1.489881 GCTGTTGTGCTTTTTGCCGG 61.490 55.000 0.00 0.00 42.00 6.13
5288 5600 1.489881 CTGTTGTGCTTTTTGCCGGC 61.490 55.000 22.73 22.73 42.00 6.13
5289 5601 1.227234 GTTGTGCTTTTTGCCGGCT 60.227 52.632 29.70 0.00 42.00 5.52
5291 5603 0.809241 TTGTGCTTTTTGCCGGCTTG 60.809 50.000 29.70 13.58 42.00 4.01
5292 5604 1.067250 GTGCTTTTTGCCGGCTTGA 59.933 52.632 29.70 11.04 42.00 3.02
5302 5644 0.379669 GCCGGCTTGATGATGAACAG 59.620 55.000 22.15 0.00 0.00 3.16
5303 5645 1.019673 CCGGCTTGATGATGAACAGG 58.980 55.000 0.00 0.00 0.00 4.00
5309 5651 1.452110 TGATGATGAACAGGTTGCGG 58.548 50.000 0.00 0.00 0.00 5.69
5329 5671 1.304713 GGTGGTGGTACGAGAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
5331 5673 1.000019 TGGTGGTACGAGAGGGAGG 60.000 63.158 0.00 0.00 0.00 4.30
5332 5674 1.757340 GGTGGTACGAGAGGGAGGG 60.757 68.421 0.00 0.00 0.00 4.30
5333 5675 1.305623 GTGGTACGAGAGGGAGGGA 59.694 63.158 0.00 0.00 0.00 4.20
5334 5676 0.752376 GTGGTACGAGAGGGAGGGAG 60.752 65.000 0.00 0.00 0.00 4.30
5335 5677 1.152715 GGTACGAGAGGGAGGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
5381 5723 1.902508 CTATAGGCGTGACCCATCCAT 59.097 52.381 0.00 0.00 40.58 3.41
5383 5725 1.744320 TAGGCGTGACCCATCCATCG 61.744 60.000 0.00 0.00 40.58 3.84
5384 5726 3.272334 GCGTGACCCATCCATCGC 61.272 66.667 0.00 0.00 37.17 4.58
5385 5727 2.588877 CGTGACCCATCCATCGCC 60.589 66.667 0.00 0.00 0.00 5.54
5386 5728 2.588877 GTGACCCATCCATCGCCG 60.589 66.667 0.00 0.00 0.00 6.46
5388 5730 4.545706 GACCCATCCATCGCCGCA 62.546 66.667 0.00 0.00 0.00 5.69
5389 5731 4.856801 ACCCATCCATCGCCGCAC 62.857 66.667 0.00 0.00 0.00 5.34
5429 5773 1.872679 GTTCCGACGTCGCCATCTC 60.873 63.158 31.73 13.86 38.18 2.75
5431 5775 1.989966 TTCCGACGTCGCCATCTCTC 61.990 60.000 31.73 0.00 38.18 3.20
5432 5776 2.024871 CGACGTCGCCATCTCTCC 59.975 66.667 26.59 0.00 0.00 3.71
5433 5777 2.024871 GACGTCGCCATCTCTCCG 59.975 66.667 0.00 0.00 0.00 4.63
5434 5778 2.750637 ACGTCGCCATCTCTCCGT 60.751 61.111 0.00 0.00 0.00 4.69
5435 5779 2.278206 CGTCGCCATCTCTCCGTG 60.278 66.667 0.00 0.00 0.00 4.94
5436 5780 2.761195 CGTCGCCATCTCTCCGTGA 61.761 63.158 0.00 0.00 0.00 4.35
5457 5801 2.642425 GTGAGAGAGACACGACCCA 58.358 57.895 0.00 0.00 0.00 4.51
5459 5803 0.959553 TGAGAGAGACACGACCCAAC 59.040 55.000 0.00 0.00 0.00 3.77
5460 5804 0.244178 GAGAGAGACACGACCCAACC 59.756 60.000 0.00 0.00 0.00 3.77
5461 5805 1.186267 AGAGAGACACGACCCAACCC 61.186 60.000 0.00 0.00 0.00 4.11
5462 5806 1.152312 AGAGACACGACCCAACCCT 60.152 57.895 0.00 0.00 0.00 4.34
5465 5809 1.186267 AGACACGACCCAACCCTCTC 61.186 60.000 0.00 0.00 0.00 3.20
5492 5836 0.108138 TGTTTTGTTTTGGGCGGGTG 60.108 50.000 0.00 0.00 0.00 4.61
5611 5969 2.926778 CCTCTAGGATTGGAGGCTTG 57.073 55.000 0.00 0.00 41.92 4.01
5620 5978 1.059584 TTGGAGGCTTGTGGGTCTGA 61.060 55.000 0.00 0.00 0.00 3.27
5649 6007 1.443872 CGTCGTCCTAGTGTGGTGC 60.444 63.158 0.00 0.00 0.00 5.01
5723 6095 2.550208 CCGTCCTAGGTTGAGCTGTTTT 60.550 50.000 9.08 0.00 0.00 2.43
5745 6117 4.342862 ACTGACACAATTGCTCTGTACT 57.657 40.909 5.05 0.00 0.00 2.73
5748 6120 5.208463 TGACACAATTGCTCTGTACTACA 57.792 39.130 5.05 0.00 0.00 2.74
5799 6171 2.203070 GCCCCACACTCGCATAGG 60.203 66.667 0.00 0.00 0.00 2.57
5803 6175 0.103208 CCCACACTCGCATAGGTCTC 59.897 60.000 0.00 0.00 0.00 3.36
5804 6176 0.248661 CCACACTCGCATAGGTCTCG 60.249 60.000 0.00 0.00 0.00 4.04
5805 6177 0.867753 CACACTCGCATAGGTCTCGC 60.868 60.000 0.00 0.00 0.00 5.03
5806 6178 1.299468 CACTCGCATAGGTCTCGCC 60.299 63.158 0.00 0.00 37.58 5.54
5817 6189 1.605753 GGTCTCGCCTTTGGAAAAGT 58.394 50.000 0.00 0.00 0.00 2.66
5818 6190 1.535896 GGTCTCGCCTTTGGAAAAGTC 59.464 52.381 0.00 0.00 0.00 3.01
5819 6191 2.495084 GTCTCGCCTTTGGAAAAGTCT 58.505 47.619 0.00 0.00 0.00 3.24
5820 6192 3.556423 GGTCTCGCCTTTGGAAAAGTCTA 60.556 47.826 0.00 0.00 0.00 2.59
5821 6193 4.254492 GTCTCGCCTTTGGAAAAGTCTAT 58.746 43.478 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 73 1.083489 TTTATTTGGTCTCGCCGCTG 58.917 50.000 0.00 0.00 41.21 5.18
96 103 8.980610 CAAAACAGCTAGATTATCTCAGATCTG 58.019 37.037 17.07 17.07 34.60 2.90
126 133 8.918202 AAAGAGGGGGAAATGTTTTTAAAATC 57.082 30.769 0.55 1.73 0.00 2.17
177 184 0.602905 AAGAGCCGAGGGTTTTCGTG 60.603 55.000 0.00 0.00 38.88 4.35
278 285 1.702491 GGCGTGTCGGTGATAAAGGC 61.702 60.000 0.00 0.00 0.00 4.35
408 430 4.054359 TGGATAGATAGGGGAGAGCTTC 57.946 50.000 0.00 0.00 0.00 3.86
413 435 5.367020 AGAGAGATGGATAGATAGGGGAGA 58.633 45.833 0.00 0.00 0.00 3.71
414 436 5.732331 AGAGAGATGGATAGATAGGGGAG 57.268 47.826 0.00 0.00 0.00 4.30
415 437 7.152761 AGATAGAGAGATGGATAGATAGGGGA 58.847 42.308 0.00 0.00 0.00 4.81
416 438 7.406620 AGATAGAGAGATGGATAGATAGGGG 57.593 44.000 0.00 0.00 0.00 4.79
424 446 9.806448 GCCATTAGATAGATAGAGAGATGGATA 57.194 37.037 0.00 0.00 34.81 2.59
426 448 7.066142 GGCCATTAGATAGATAGAGAGATGGA 58.934 42.308 0.00 0.00 34.81 3.41
428 450 6.016360 CCGGCCATTAGATAGATAGAGAGATG 60.016 46.154 2.24 0.00 0.00 2.90
430 452 5.441500 CCGGCCATTAGATAGATAGAGAGA 58.558 45.833 2.24 0.00 0.00 3.10
512 546 2.617538 AGGACGAGGAGGGAGGGA 60.618 66.667 0.00 0.00 0.00 4.20
513 547 2.123640 GAGGACGAGGAGGGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
514 548 2.123640 GGAGGACGAGGAGGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
515 549 2.123640 GGGAGGACGAGGAGGGAG 60.124 72.222 0.00 0.00 0.00 4.30
535 569 3.386768 TTTCCGTGTTCTTGAGAGAGG 57.613 47.619 0.00 0.00 32.44 3.69
558 592 1.304962 GAACCCAAAAGGCCCCGAT 60.305 57.895 0.00 0.00 40.58 4.18
559 593 2.116556 GAACCCAAAAGGCCCCGA 59.883 61.111 0.00 0.00 40.58 5.14
560 594 2.994995 GGAACCCAAAAGGCCCCG 60.995 66.667 0.00 0.00 40.58 5.73
561 595 2.994995 CGGAACCCAAAAGGCCCC 60.995 66.667 0.00 0.00 40.58 5.80
565 599 1.176619 GGTGTCCGGAACCCAAAAGG 61.177 60.000 19.43 0.00 43.78 3.11
606 640 1.490621 CCGGTCAAAGCAAAGCAAAG 58.509 50.000 0.00 0.00 0.00 2.77
712 751 6.989759 GGAATAAACAAAGCAAAGGAAAGGAA 59.010 34.615 0.00 0.00 0.00 3.36
713 752 6.521162 GGAATAAACAAAGCAAAGGAAAGGA 58.479 36.000 0.00 0.00 0.00 3.36
715 754 5.405269 CCGGAATAAACAAAGCAAAGGAAAG 59.595 40.000 0.00 0.00 0.00 2.62
718 757 3.305744 GCCGGAATAAACAAAGCAAAGGA 60.306 43.478 5.05 0.00 0.00 3.36
721 760 3.572255 AGAGCCGGAATAAACAAAGCAAA 59.428 39.130 5.05 0.00 0.00 3.68
722 761 3.057596 CAGAGCCGGAATAAACAAAGCAA 60.058 43.478 5.05 0.00 0.00 3.91
737 776 3.958147 ATGTGAACGCCCAGAGCCG 62.958 63.158 0.00 0.00 38.78 5.52
834 873 6.647481 CCATCAAAAGAGCAAATCAACATCAA 59.353 34.615 0.00 0.00 0.00 2.57
861 900 3.891400 CAATCCATGGCGGGCACG 61.891 66.667 2.50 2.50 44.63 5.34
866 905 1.008194 CGCAATCAATCCATGGCGG 60.008 57.895 6.96 0.00 40.70 6.13
900 939 4.980903 CGCAAACCACCGCACAGC 62.981 66.667 0.00 0.00 0.00 4.40
902 941 1.729470 AATTCGCAAACCACCGCACA 61.729 50.000 0.00 0.00 0.00 4.57
903 942 0.596341 AAATTCGCAAACCACCGCAC 60.596 50.000 0.00 0.00 0.00 5.34
905 944 0.318275 TCAAATTCGCAAACCACCGC 60.318 50.000 0.00 0.00 0.00 5.68
906 945 1.984990 CATCAAATTCGCAAACCACCG 59.015 47.619 0.00 0.00 0.00 4.94
908 947 3.244976 CTCCATCAAATTCGCAAACCAC 58.755 45.455 0.00 0.00 0.00 4.16
909 948 2.230992 CCTCCATCAAATTCGCAAACCA 59.769 45.455 0.00 0.00 0.00 3.67
925 964 1.912763 GCCACCAAATTGCCCTCCA 60.913 57.895 0.00 0.00 0.00 3.86
951 990 1.079503 GATCACTTCTTCCCGCACAC 58.920 55.000 0.00 0.00 0.00 3.82
979 1018 2.835431 CACCCAAAACCACCGCCA 60.835 61.111 0.00 0.00 0.00 5.69
992 1031 0.543749 CACCTCCTTCATCTCCACCC 59.456 60.000 0.00 0.00 0.00 4.61
1929 2061 1.227764 CCAGTGGATCCTCATGGCG 60.228 63.158 14.23 0.00 0.00 5.69
2111 2243 2.275318 GAGAAGAAAGGATGGAGTGCG 58.725 52.381 0.00 0.00 0.00 5.34
2148 2280 3.091545 CCCTTGCAGTTCCATGTTATGT 58.908 45.455 0.00 0.00 0.00 2.29
2149 2281 3.355378 TCCCTTGCAGTTCCATGTTATG 58.645 45.455 0.00 0.00 0.00 1.90
2150 2282 3.737559 TCCCTTGCAGTTCCATGTTAT 57.262 42.857 0.00 0.00 0.00 1.89
2151 2283 3.010027 TCATCCCTTGCAGTTCCATGTTA 59.990 43.478 0.00 0.00 0.00 2.41
2152 2284 2.173519 CATCCCTTGCAGTTCCATGTT 58.826 47.619 0.00 0.00 0.00 2.71
2153 2285 1.355381 TCATCCCTTGCAGTTCCATGT 59.645 47.619 0.00 0.00 0.00 3.21
2154 2286 2.133281 TCATCCCTTGCAGTTCCATG 57.867 50.000 0.00 0.00 0.00 3.66
2155 2287 2.905415 TTCATCCCTTGCAGTTCCAT 57.095 45.000 0.00 0.00 0.00 3.41
2156 2288 2.449464 CATTCATCCCTTGCAGTTCCA 58.551 47.619 0.00 0.00 0.00 3.53
2157 2289 1.135721 GCATTCATCCCTTGCAGTTCC 59.864 52.381 0.00 0.00 36.40 3.62
2180 2313 5.933187 ACTAACGTTGTGTAAATGATGCA 57.067 34.783 11.99 0.00 0.00 3.96
2184 2317 8.522003 TCCATACTACTAACGTTGTGTAAATGA 58.478 33.333 22.41 14.25 31.66 2.57
2197 2330 6.658188 ATGAGAAGCCTCCATACTACTAAC 57.342 41.667 0.00 0.00 38.66 2.34
2198 2331 6.839134 TGAATGAGAAGCCTCCATACTACTAA 59.161 38.462 0.00 0.00 38.66 2.24
2199 2332 6.373759 TGAATGAGAAGCCTCCATACTACTA 58.626 40.000 0.00 0.00 38.66 1.82
2200 2333 5.211973 TGAATGAGAAGCCTCCATACTACT 58.788 41.667 0.00 0.00 38.66 2.57
2201 2334 5.303078 TCTGAATGAGAAGCCTCCATACTAC 59.697 44.000 0.00 0.00 38.66 2.73
2202 2335 5.458595 TCTGAATGAGAAGCCTCCATACTA 58.541 41.667 0.00 0.00 38.66 1.82
2203 2336 4.293494 TCTGAATGAGAAGCCTCCATACT 58.707 43.478 0.00 0.00 38.66 2.12
2204 2337 4.679373 TCTGAATGAGAAGCCTCCATAC 57.321 45.455 0.00 0.00 38.66 2.39
2205 2338 4.504514 GCATCTGAATGAGAAGCCTCCATA 60.505 45.833 0.00 0.00 39.14 2.74
2206 2339 3.748027 GCATCTGAATGAGAAGCCTCCAT 60.748 47.826 0.00 0.00 39.14 3.41
2207 2340 2.421107 GCATCTGAATGAGAAGCCTCCA 60.421 50.000 0.00 0.00 39.14 3.86
2208 2341 2.220313 GCATCTGAATGAGAAGCCTCC 58.780 52.381 0.00 0.00 39.14 4.30
2212 2345 3.276857 TCAAGGCATCTGAATGAGAAGC 58.723 45.455 0.00 0.00 43.45 3.86
2238 2371 9.759473 TGTATGGTAGTACCTTAACTTCTAGTT 57.241 33.333 20.07 0.00 39.54 2.24
2259 2395 3.255725 CAAGCTGGCCATGTTTTGTATG 58.744 45.455 5.51 0.00 0.00 2.39
2261 2397 1.000731 GCAAGCTGGCCATGTTTTGTA 59.999 47.619 5.51 0.00 0.00 2.41
2262 2398 0.249996 GCAAGCTGGCCATGTTTTGT 60.250 50.000 5.51 0.00 0.00 2.83
2308 2447 9.100197 GGGTTTGGGAATCATTATTATTACCAT 57.900 33.333 4.10 0.00 44.91 3.55
2325 2468 2.922955 TGTTGATATCAGGGGTTTGGGA 59.077 45.455 5.39 0.00 0.00 4.37
2328 2471 7.763985 GGTTAATTTGTTGATATCAGGGGTTTG 59.236 37.037 5.39 0.00 0.00 2.93
2331 2474 6.741724 AGGTTAATTTGTTGATATCAGGGGT 58.258 36.000 5.39 0.00 0.00 4.95
2352 2495 7.888546 AGCCAGTTGTTGAACTAATTAATAGGT 59.111 33.333 0.00 0.00 40.68 3.08
2398 2541 4.877823 TCAAAATCGAAGGAGGATGTGATG 59.122 41.667 0.00 0.00 0.00 3.07
2399 2542 4.878397 GTCAAAATCGAAGGAGGATGTGAT 59.122 41.667 0.00 0.00 0.00 3.06
2418 2561 6.773200 TGTACCACCAATTCATACAAAGTCAA 59.227 34.615 0.00 0.00 0.00 3.18
2435 2582 5.897377 ACAGCTTTATTGATTGTACCACC 57.103 39.130 0.00 0.00 0.00 4.61
2440 2587 7.035004 GCATTCCAACAGCTTTATTGATTGTA 58.965 34.615 4.10 0.00 0.00 2.41
2467 2614 5.376854 AACTACCATGCAGTTGTGAATTC 57.623 39.130 9.43 0.00 34.96 2.17
2477 2624 6.183360 CCTTTTCTTCCATAACTACCATGCAG 60.183 42.308 0.00 0.00 0.00 4.41
2483 2636 5.710567 ACAAGCCTTTTCTTCCATAACTACC 59.289 40.000 0.00 0.00 0.00 3.18
2552 2705 5.174395 AGCTAGTACTTGAAGAACATGCAG 58.826 41.667 8.60 0.00 0.00 4.41
2570 2723 9.868277 CCCACTATTGATAAATAAGAGAGCTAG 57.132 37.037 0.00 0.00 0.00 3.42
2581 2734 7.816411 AGTTTAGGAGCCCACTATTGATAAAT 58.184 34.615 0.00 0.00 0.00 1.40
2585 2738 5.398012 GGAAGTTTAGGAGCCCACTATTGAT 60.398 44.000 0.00 0.00 0.00 2.57
2589 2742 2.434702 CGGAAGTTTAGGAGCCCACTAT 59.565 50.000 0.00 0.00 0.00 2.12
2593 2746 1.941377 TACGGAAGTTTAGGAGCCCA 58.059 50.000 0.00 0.00 46.40 5.36
2594 2747 3.464907 GAATACGGAAGTTTAGGAGCCC 58.535 50.000 0.00 0.00 46.40 5.19
2595 2748 3.134262 AGGAATACGGAAGTTTAGGAGCC 59.866 47.826 0.00 0.00 46.40 4.70
2632 2814 8.755941 CGATGATGACGTACTATTCAAGAATTT 58.244 33.333 0.02 0.00 32.50 1.82
2635 2817 6.183360 ACCGATGATGACGTACTATTCAAGAA 60.183 38.462 0.00 0.00 0.00 2.52
2637 2819 5.520632 ACCGATGATGACGTACTATTCAAG 58.479 41.667 0.00 0.00 0.00 3.02
2639 2821 5.278604 CAACCGATGATGACGTACTATTCA 58.721 41.667 0.00 0.00 0.00 2.57
2640 2822 4.148348 GCAACCGATGATGACGTACTATTC 59.852 45.833 0.00 0.00 0.00 1.75
2641 2823 4.049186 GCAACCGATGATGACGTACTATT 58.951 43.478 0.00 0.00 0.00 1.73
2642 2824 3.318275 AGCAACCGATGATGACGTACTAT 59.682 43.478 0.00 0.00 0.00 2.12
2650 2835 3.346315 ACATTTGAGCAACCGATGATGA 58.654 40.909 0.00 0.00 0.00 2.92
2653 2838 2.483877 GTGACATTTGAGCAACCGATGA 59.516 45.455 0.00 0.00 0.00 2.92
2704 2889 5.589367 AGTATTCCCATGCCAAGTATCAT 57.411 39.130 0.00 0.00 0.00 2.45
2708 2893 3.897239 CCAAGTATTCCCATGCCAAGTA 58.103 45.455 0.00 0.00 0.00 2.24
2709 2894 2.738743 CCAAGTATTCCCATGCCAAGT 58.261 47.619 0.00 0.00 0.00 3.16
2724 2915 7.832769 TGTTTCTAGTTAAAAGTTTGCCAAGT 58.167 30.769 0.00 0.00 0.00 3.16
2747 2938 5.044846 ACCTAACCATGCTAAAGGATTCTGT 60.045 40.000 8.18 0.00 0.00 3.41
2755 2946 8.993121 CATTAGTCATACCTAACCATGCTAAAG 58.007 37.037 0.00 0.00 31.20 1.85
2770 2961 6.978659 TCGTTTCTCATCCACATTAGTCATAC 59.021 38.462 0.00 0.00 0.00 2.39
2772 2963 5.977635 TCGTTTCTCATCCACATTAGTCAT 58.022 37.500 0.00 0.00 0.00 3.06
2783 2974 8.879759 TGTAATTAGACAAATCGTTTCTCATCC 58.120 33.333 0.00 0.00 0.00 3.51
2792 2983 7.065803 CCAGGTCAATGTAATTAGACAAATCGT 59.934 37.037 5.31 0.00 36.63 3.73
2794 2985 8.506168 TCCAGGTCAATGTAATTAGACAAATC 57.494 34.615 5.31 0.00 36.63 2.17
2852 3043 1.480954 CCCTTCTACTGTGTACGGCAT 59.519 52.381 0.00 0.00 0.00 4.40
2887 3078 7.710044 CAGATGATGTAGCTTGTAGATTCTTGT 59.290 37.037 0.00 0.00 0.00 3.16
2928 3119 5.696724 ACACGAACAACTTCCATAAGAGAAG 59.303 40.000 0.00 0.00 45.12 2.85
2935 3126 7.874016 ACTATTTGTACACGAACAACTTCCATA 59.126 33.333 0.00 0.00 39.02 2.74
2947 3138 6.016213 TGCACTCTTACTATTTGTACACGA 57.984 37.500 0.00 0.00 0.00 4.35
2949 3140 5.637810 TGCTGCACTCTTACTATTTGTACAC 59.362 40.000 0.00 0.00 0.00 2.90
3019 3210 3.131223 TGGGCTTTGAAACAAACGAATGA 59.869 39.130 0.00 0.00 0.00 2.57
3028 3219 4.272489 CCTGATAGATGGGCTTTGAAACA 58.728 43.478 0.00 0.00 0.00 2.83
3099 3306 5.646360 AGTATTCCACACCGAACTTTATTGG 59.354 40.000 0.00 0.00 0.00 3.16
3180 3403 7.172532 TGAGCGTCATATTAATTCAATACCCAC 59.827 37.037 0.00 0.00 31.88 4.61
3187 3410 8.887036 ACTACATGAGCGTCATATTAATTCAA 57.113 30.769 0.00 0.00 34.28 2.69
3201 3424 5.747675 GGATCATCATCATACTACATGAGCG 59.252 44.000 0.00 0.00 31.93 5.03
3202 3425 6.047870 GGGATCATCATCATACTACATGAGC 58.952 44.000 0.00 0.00 32.53 4.26
3203 3426 7.093421 ACAGGGATCATCATCATACTACATGAG 60.093 40.741 0.00 0.00 32.53 2.90
3217 3443 6.127168 ACGAACAGTTTATACAGGGATCATCA 60.127 38.462 0.00 0.00 0.00 3.07
3226 3452 5.163953 CCTTCAGCACGAACAGTTTATACAG 60.164 44.000 0.00 0.00 0.00 2.74
3240 3466 2.093973 AGGATCAAGTACCTTCAGCACG 60.094 50.000 0.00 0.00 31.95 5.34
3245 3471 3.012959 AGAGGGAGGATCAAGTACCTTCA 59.987 47.826 0.00 0.00 36.57 3.02
3253 3479 6.657875 ACTTTCAAATAGAGGGAGGATCAAG 58.342 40.000 0.00 0.00 36.25 3.02
3269 3495 2.623878 TGTGCGGTAGGACTTTCAAA 57.376 45.000 0.00 0.00 39.62 2.69
3348 3575 6.643770 CCAAATATACCAATTTCAGCATCTGC 59.356 38.462 0.00 0.00 42.49 4.26
3367 3602 6.071447 AGCATGTTATGTTGAACTGCCAAATA 60.071 34.615 0.00 0.00 35.69 1.40
3401 3636 9.703892 GCTGAGAGAGCTAAAAATGATAGATAA 57.296 33.333 0.00 0.00 45.21 1.75
3483 3718 7.818997 AGACATCATTCACTATCCTACGTAA 57.181 36.000 0.00 0.00 0.00 3.18
3509 3744 7.411808 ACCTCCACTATCTCAAAACTACTAGA 58.588 38.462 0.00 0.00 0.00 2.43
3516 3751 6.879400 ACATAGACCTCCACTATCTCAAAAC 58.121 40.000 0.00 0.00 0.00 2.43
3518 3753 7.496346 AAACATAGACCTCCACTATCTCAAA 57.504 36.000 0.00 0.00 0.00 2.69
3519 3754 7.180229 TGAAAACATAGACCTCCACTATCTCAA 59.820 37.037 0.00 0.00 0.00 3.02
3527 3762 5.491982 ACTGATGAAAACATAGACCTCCAC 58.508 41.667 0.00 0.00 0.00 4.02
3529 3764 7.500992 TGATACTGATGAAAACATAGACCTCC 58.499 38.462 0.00 0.00 0.00 4.30
3584 3821 5.048991 ACAACACCAACTAAAATCGATGACC 60.049 40.000 0.00 0.00 0.00 4.02
3586 3823 5.561919 GCACAACACCAACTAAAATCGATGA 60.562 40.000 0.00 0.00 0.00 2.92
3591 3828 6.313744 AGTAGCACAACACCAACTAAAATC 57.686 37.500 0.00 0.00 0.00 2.17
3610 3847 4.554973 GCAGAACTAAAATGCGCAAAGTAG 59.445 41.667 17.11 17.68 0.00 2.57
3632 3869 4.821935 AAGTACCCTGGTGCTTGC 57.178 55.556 17.36 0.00 46.36 4.01
3672 3909 8.877864 ACCATGAACCATGTTAATAAAGAGAA 57.122 30.769 0.00 0.00 39.94 2.87
3689 3926 3.245990 GCAAGAAGTTTGCAACCATGAAC 59.754 43.478 0.00 0.00 44.34 3.18
3704 3941 1.171308 CCCATGTGACCTGCAAGAAG 58.829 55.000 0.00 0.00 34.07 2.85
3706 3943 0.994247 ATCCCATGTGACCTGCAAGA 59.006 50.000 0.00 0.00 34.07 3.02
3743 3980 1.067635 GGGCTCACGCATTTCACATTT 60.068 47.619 0.00 0.00 38.10 2.32
4127 4370 0.104855 ACAAGCAAGAGACGCTGTCA 59.895 50.000 10.52 0.00 40.35 3.58
4262 4505 0.334676 CCCCAGAGGAGAGTGTCTCT 59.665 60.000 4.02 0.00 44.28 3.10
4334 4577 1.732941 TTGATGAACCGGAACCATCG 58.267 50.000 9.46 0.00 39.48 3.84
4343 4586 1.262417 CCGATGCAGATTGATGAACCG 59.738 52.381 0.00 0.00 0.00 4.44
4361 4604 0.394565 GACCCTGGGATGAGAATCCG 59.605 60.000 22.23 0.00 41.63 4.18
4394 4637 2.069776 CCCAGCTTCCAGTCCAAGA 58.930 57.895 0.00 0.00 0.00 3.02
4472 4715 2.579207 ACAACTCGTCATATGACCCG 57.421 50.000 26.33 19.81 41.86 5.28
4517 4760 7.011763 TGGCTTATGATTTCTTCTTTCTCGATG 59.988 37.037 0.00 0.00 0.00 3.84
4526 4769 5.163258 ACGGAGATGGCTTATGATTTCTTCT 60.163 40.000 0.00 0.00 0.00 2.85
4562 4805 2.674033 TGCATGACAGCACCAGCC 60.674 61.111 0.00 0.00 43.56 4.85
4571 4814 0.401356 ATCCACCAGTGTGCATGACA 59.599 50.000 0.00 0.00 41.35 3.58
4586 4829 2.531771 TCTCACCTGAACGGTAATCCA 58.468 47.619 0.00 0.00 46.94 3.41
4614 4857 8.839310 AGTTAAGGAATACTGCACATATCATC 57.161 34.615 0.00 0.00 0.00 2.92
4617 4860 6.924060 ACGAGTTAAGGAATACTGCACATATC 59.076 38.462 0.00 0.00 0.00 1.63
4623 4866 3.259064 GCACGAGTTAAGGAATACTGCA 58.741 45.455 0.00 0.00 0.00 4.41
4624 4867 2.281762 CGCACGAGTTAAGGAATACTGC 59.718 50.000 0.00 0.00 0.00 4.40
4633 4876 7.591795 AGAAGATATTATCACGCACGAGTTAAG 59.408 37.037 6.46 0.00 0.00 1.85
4643 4886 8.755696 AGAAGATGAAGAAGATATTATCACGC 57.244 34.615 6.46 0.00 0.00 5.34
4652 4895 9.322773 CTGCAACATTAGAAGATGAAGAAGATA 57.677 33.333 0.00 0.00 0.00 1.98
4653 4896 7.828223 ACTGCAACATTAGAAGATGAAGAAGAT 59.172 33.333 0.00 0.00 0.00 2.40
4668 4915 7.971183 TCACTACAACATTACTGCAACATTA 57.029 32.000 0.00 0.00 0.00 1.90
4672 4919 7.974675 ACATATCACTACAACATTACTGCAAC 58.025 34.615 0.00 0.00 0.00 4.17
4719 4966 3.745975 CCACTTTCATGAAGTCGCTGTTA 59.254 43.478 8.41 0.00 45.40 2.41
4779 5026 0.108615 CGATGAGAGGTTTCGCCAGT 60.109 55.000 0.00 0.00 40.61 4.00
4842 5133 7.042725 TGGTTTAATATTTCTCGATGAAGCTCG 60.043 37.037 0.00 0.00 39.99 5.03
4846 5137 9.319143 ACTCTGGTTTAATATTTCTCGATGAAG 57.681 33.333 0.00 0.00 35.89 3.02
4852 5143 6.480320 CCCTCACTCTGGTTTAATATTTCTCG 59.520 42.308 0.00 0.00 0.00 4.04
4875 5167 3.618507 GCATGCATATGGAGAGTAGTCCC 60.619 52.174 14.21 0.00 35.49 4.46
5019 5320 1.396996 CCTTAACTTGGGCGATCAACG 59.603 52.381 0.00 0.00 45.66 4.10
5069 5371 5.716228 AGATCAGAAGCCTCATGACCTATAG 59.284 44.000 0.00 0.00 0.00 1.31
5071 5373 4.491675 AGATCAGAAGCCTCATGACCTAT 58.508 43.478 0.00 0.00 0.00 2.57
5074 5376 3.204526 CAAGATCAGAAGCCTCATGACC 58.795 50.000 0.00 0.00 0.00 4.02
5075 5377 3.118482 TCCAAGATCAGAAGCCTCATGAC 60.118 47.826 0.00 0.00 0.00 3.06
5079 5381 1.205655 CGTCCAAGATCAGAAGCCTCA 59.794 52.381 0.00 0.00 0.00 3.86
5080 5382 1.472376 CCGTCCAAGATCAGAAGCCTC 60.472 57.143 0.00 0.00 0.00 4.70
5081 5383 0.539051 CCGTCCAAGATCAGAAGCCT 59.461 55.000 0.00 0.00 0.00 4.58
5082 5384 0.537188 TCCGTCCAAGATCAGAAGCC 59.463 55.000 0.00 0.00 0.00 4.35
5083 5385 2.611225 ATCCGTCCAAGATCAGAAGC 57.389 50.000 0.00 0.00 0.00 3.86
5085 5387 3.009723 GCAAATCCGTCCAAGATCAGAA 58.990 45.455 0.00 0.00 0.00 3.02
5086 5388 2.237143 AGCAAATCCGTCCAAGATCAGA 59.763 45.455 0.00 0.00 0.00 3.27
5087 5389 2.636830 AGCAAATCCGTCCAAGATCAG 58.363 47.619 0.00 0.00 0.00 2.90
5088 5390 2.787473 AGCAAATCCGTCCAAGATCA 57.213 45.000 0.00 0.00 0.00 2.92
5089 5391 3.762779 CAAAGCAAATCCGTCCAAGATC 58.237 45.455 0.00 0.00 0.00 2.75
5090 5392 2.094545 GCAAAGCAAATCCGTCCAAGAT 60.095 45.455 0.00 0.00 0.00 2.40
5165 5477 6.293516 GCTCTAATCCTCAAGCATTTCATCTG 60.294 42.308 0.00 0.00 34.86 2.90
5176 5488 1.927895 AACGCGCTCTAATCCTCAAG 58.072 50.000 5.73 0.00 0.00 3.02
5183 5495 3.165058 TCTCATCAAACGCGCTCTAAT 57.835 42.857 5.73 0.00 0.00 1.73
5184 5496 2.647529 TCTCATCAAACGCGCTCTAA 57.352 45.000 5.73 0.00 0.00 2.10
5185 5497 2.647529 TTCTCATCAAACGCGCTCTA 57.352 45.000 5.73 0.00 0.00 2.43
5186 5498 2.015736 ATTCTCATCAAACGCGCTCT 57.984 45.000 5.73 0.00 0.00 4.09
5187 5499 2.813779 AATTCTCATCAAACGCGCTC 57.186 45.000 5.73 0.00 0.00 5.03
5188 5500 4.882671 ATAAATTCTCATCAAACGCGCT 57.117 36.364 5.73 0.00 0.00 5.92
5189 5501 4.204978 CCAATAAATTCTCATCAAACGCGC 59.795 41.667 5.73 0.00 0.00 6.86
5190 5502 5.227805 CACCAATAAATTCTCATCAAACGCG 59.772 40.000 3.53 3.53 0.00 6.01
5191 5503 6.092748 ACACCAATAAATTCTCATCAAACGC 58.907 36.000 0.00 0.00 0.00 4.84
5192 5504 8.519492 AAACACCAATAAATTCTCATCAAACG 57.481 30.769 0.00 0.00 0.00 3.60
5233 5545 9.432982 TGGCCAAGAAATAATGTCCTAATAAAT 57.567 29.630 0.61 0.00 0.00 1.40
5234 5546 8.830915 TGGCCAAGAAATAATGTCCTAATAAA 57.169 30.769 0.61 0.00 0.00 1.40
5236 5548 8.859090 CAATGGCCAAGAAATAATGTCCTAATA 58.141 33.333 10.96 0.00 0.00 0.98
5237 5549 7.345392 ACAATGGCCAAGAAATAATGTCCTAAT 59.655 33.333 10.96 0.00 0.00 1.73
5238 5550 6.667414 ACAATGGCCAAGAAATAATGTCCTAA 59.333 34.615 10.96 0.00 0.00 2.69
5239 5551 6.194235 ACAATGGCCAAGAAATAATGTCCTA 58.806 36.000 10.96 0.00 0.00 2.94
5240 5552 5.025453 ACAATGGCCAAGAAATAATGTCCT 58.975 37.500 10.96 0.00 0.00 3.85
5241 5553 5.343307 ACAATGGCCAAGAAATAATGTCC 57.657 39.130 10.96 0.00 0.00 4.02
5242 5554 6.165577 ACAACAATGGCCAAGAAATAATGTC 58.834 36.000 10.96 0.00 0.00 3.06
5243 5555 6.112927 ACAACAATGGCCAAGAAATAATGT 57.887 33.333 10.96 4.51 0.00 2.71
5244 5556 5.289193 CGACAACAATGGCCAAGAAATAATG 59.711 40.000 10.96 3.83 0.00 1.90
5245 5557 5.410067 CGACAACAATGGCCAAGAAATAAT 58.590 37.500 10.96 0.00 0.00 1.28
5248 5560 2.610232 GCGACAACAATGGCCAAGAAAT 60.610 45.455 10.96 0.00 0.00 2.17
5277 5589 2.094597 TCATCATCAAGCCGGCAAAAAG 60.095 45.455 31.54 15.53 0.00 2.27
5278 5590 1.891811 TCATCATCAAGCCGGCAAAAA 59.108 42.857 31.54 11.53 0.00 1.94
5281 5593 0.810648 GTTCATCATCAAGCCGGCAA 59.189 50.000 31.54 14.46 0.00 4.52
5283 5595 0.379669 CTGTTCATCATCAAGCCGGC 59.620 55.000 21.89 21.89 0.00 6.13
5284 5596 1.019673 CCTGTTCATCATCAAGCCGG 58.980 55.000 0.00 0.00 0.00 6.13
5285 5597 1.742761 ACCTGTTCATCATCAAGCCG 58.257 50.000 0.00 0.00 0.00 5.52
5287 5599 2.730090 CGCAACCTGTTCATCATCAAGC 60.730 50.000 0.00 0.00 0.00 4.01
5288 5600 2.159476 CCGCAACCTGTTCATCATCAAG 60.159 50.000 0.00 0.00 0.00 3.02
5289 5601 1.811965 CCGCAACCTGTTCATCATCAA 59.188 47.619 0.00 0.00 0.00 2.57
5291 5603 1.131126 CACCGCAACCTGTTCATCATC 59.869 52.381 0.00 0.00 0.00 2.92
5292 5604 1.167851 CACCGCAACCTGTTCATCAT 58.832 50.000 0.00 0.00 0.00 2.45
5302 5644 3.479127 TACCACCACCACCGCAACC 62.479 63.158 0.00 0.00 0.00 3.77
5303 5645 2.111460 TACCACCACCACCGCAAC 59.889 61.111 0.00 0.00 0.00 4.17
5309 5651 1.590147 CCTCTCGTACCACCACCAC 59.410 63.158 0.00 0.00 0.00 4.16
5329 5671 2.288847 TAGCCTCCCTCCCTCCCT 60.289 66.667 0.00 0.00 0.00 4.20
5331 5673 2.202899 CCTAGCCTCCCTCCCTCC 59.797 72.222 0.00 0.00 0.00 4.30
5332 5674 2.202899 CCCTAGCCTCCCTCCCTC 59.797 72.222 0.00 0.00 0.00 4.30
5333 5675 2.625431 ACCCTAGCCTCCCTCCCT 60.625 66.667 0.00 0.00 0.00 4.20
5334 5676 2.446802 CACCCTAGCCTCCCTCCC 60.447 72.222 0.00 0.00 0.00 4.30
5335 5677 2.446802 CCACCCTAGCCTCCCTCC 60.447 72.222 0.00 0.00 0.00 4.30
5424 5768 0.099613 CTCACGGTCACGGAGAGATG 59.900 60.000 4.05 0.00 44.10 2.90
5429 5773 0.673956 TCTCTCTCACGGTCACGGAG 60.674 60.000 0.00 0.00 46.48 4.63
5431 5775 1.235281 TGTCTCTCTCACGGTCACGG 61.235 60.000 0.00 0.00 46.48 4.94
5433 5777 3.777016 GTGTCTCTCTCACGGTCAC 57.223 57.895 0.00 0.00 0.00 3.67
5457 5801 6.109156 ACAAAACAAAACAAAGAGAGGGTT 57.891 33.333 0.00 0.00 0.00 4.11
5459 5803 7.297391 CAAAACAAAACAAAACAAAGAGAGGG 58.703 34.615 0.00 0.00 0.00 4.30
5460 5804 7.297391 CCAAAACAAAACAAAACAAAGAGAGG 58.703 34.615 0.00 0.00 0.00 3.69
5461 5805 7.297391 CCCAAAACAAAACAAAACAAAGAGAG 58.703 34.615 0.00 0.00 0.00 3.20
5462 5806 6.293680 GCCCAAAACAAAACAAAACAAAGAGA 60.294 34.615 0.00 0.00 0.00 3.10
5465 5809 4.614702 CGCCCAAAACAAAACAAAACAAAG 59.385 37.500 0.00 0.00 0.00 2.77
5573 5919 1.136984 CGTGTCCAGCCTAGTCGAC 59.863 63.158 7.70 7.70 0.00 4.20
5595 5941 1.133976 CCCACAAGCCTCCAATCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
5596 5942 0.918983 CCCACAAGCCTCCAATCCTA 59.081 55.000 0.00 0.00 0.00 2.94
5597 5943 1.142688 ACCCACAAGCCTCCAATCCT 61.143 55.000 0.00 0.00 0.00 3.24
5611 5969 2.359230 GCAGCCTGTCAGACCCAC 60.359 66.667 0.00 0.00 0.00 4.61
5620 5978 2.661866 GACGACGTTGCAGCCTGT 60.662 61.111 0.13 0.00 0.00 4.00
5723 6095 5.468540 AGTACAGAGCAATTGTGTCAGTA 57.531 39.130 7.40 8.78 34.68 2.74
5745 6117 2.165641 GGTCATCATCACGGACACTGTA 59.834 50.000 0.00 0.00 33.26 2.74
5748 6120 1.266178 TGGTCATCATCACGGACACT 58.734 50.000 0.00 0.00 33.26 3.55
5788 6160 1.299468 GGCGAGACCTATGCGAGTG 60.299 63.158 0.00 0.00 34.51 3.51
5799 6171 2.495084 AGACTTTTCCAAAGGCGAGAC 58.505 47.619 1.50 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.