Multiple sequence alignment - TraesCS1A01G156400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G156400 chr1A 100.000 3700 0 0 1 3700 277075335 277079034 0.000000e+00 6833.0
1 TraesCS1A01G156400 chr1B 94.784 2320 100 12 721 3029 309488832 309491141 0.000000e+00 3594.0
2 TraesCS1A01G156400 chr1B 85.306 490 65 4 3213 3700 309496574 309497058 1.980000e-137 499.0
3 TraesCS1A01G156400 chr1B 83.951 324 17 16 1 296 309487784 309488100 1.010000e-70 278.0
4 TraesCS1A01G156400 chr1B 97.701 87 2 0 3034 3120 309495533 309495619 2.300000e-32 150.0
5 TraesCS1A01G156400 chr1D 93.832 2351 95 25 719 3031 216399371 216401709 0.000000e+00 3493.0
6 TraesCS1A01G156400 chr1D 86.789 492 42 11 3213 3700 216403809 216404281 9.100000e-146 527.0
7 TraesCS1A01G156400 chr1D 88.571 385 15 9 1 374 216399008 216399374 1.220000e-119 440.0
8 TraesCS1A01G156400 chr1D 87.879 198 18 6 3399 3593 607029 606835 1.030000e-55 228.0
9 TraesCS1A01G156400 chr7B 88.010 417 30 9 1209 1625 659008830 659009226 3.340000e-130 475.0
10 TraesCS1A01G156400 chr7B 76.839 367 77 5 3228 3586 550654001 550653635 2.250000e-47 200.0
11 TraesCS1A01G156400 chr7B 80.829 193 33 4 3402 3593 730392282 730392471 8.280000e-32 148.0
12 TraesCS1A01G156400 chr7B 86.667 60 8 0 3228 3287 161450115 161450056 2.380000e-07 67.6
13 TraesCS1A01G156400 chr3B 87.770 417 31 9 1209 1625 734367643 734368039 1.560000e-128 470.0
14 TraesCS1A01G156400 chr3B 80.541 370 57 10 3230 3587 94653606 94653972 1.690000e-68 270.0
15 TraesCS1A01G156400 chr3B 74.432 176 39 5 372 544 344659423 344659251 1.840000e-08 71.3
16 TraesCS1A01G156400 chr2B 90.085 353 31 4 372 722 752593032 752593382 4.360000e-124 455.0
17 TraesCS1A01G156400 chr2B 74.863 366 64 26 372 723 535614912 535615263 1.390000e-29 141.0
18 TraesCS1A01G156400 chr5B 87.006 354 37 6 374 720 129716478 129716829 1.250000e-104 390.0
19 TraesCS1A01G156400 chr6B 91.477 176 9 5 374 547 278155687 278155858 1.720000e-58 237.0
20 TraesCS1A01G156400 chr2D 90.395 177 15 2 374 549 368790748 368790923 7.990000e-57 231.0
21 TraesCS1A01G156400 chr2D 85.167 209 31 0 3378 3586 593354492 593354284 8.050000e-52 215.0
22 TraesCS1A01G156400 chr2D 89.286 84 8 1 3267 3350 593354633 593354551 1.820000e-18 104.0
23 TraesCS1A01G156400 chr2A 87.255 204 25 1 3384 3587 745775270 745775068 7.990000e-57 231.0
24 TraesCS1A01G156400 chr2A 75.439 399 64 22 3228 3593 778762071 778761674 2.960000e-36 163.0
25 TraesCS1A01G156400 chr7D 85.714 217 29 2 3378 3593 628536480 628536265 1.030000e-55 228.0
26 TraesCS1A01G156400 chr7D 74.033 362 73 18 371 722 78315053 78314703 1.080000e-25 128.0
27 TraesCS1A01G156400 chr6A 85.047 214 29 3 3378 3590 611089243 611089032 8.050000e-52 215.0
28 TraesCS1A01G156400 chr5D 74.652 359 73 16 372 722 558007135 558006787 3.850000e-30 143.0
29 TraesCS1A01G156400 chr5D 83.495 103 14 3 372 473 311803440 311803340 3.930000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G156400 chr1A 277075335 277079034 3699 False 6833.000000 6833 100.000000 1 3700 1 chr1A.!!$F1 3699
1 TraesCS1A01G156400 chr1B 309487784 309491141 3357 False 1936.000000 3594 89.367500 1 3029 2 chr1B.!!$F1 3028
2 TraesCS1A01G156400 chr1B 309495533 309497058 1525 False 324.500000 499 91.503500 3034 3700 2 chr1B.!!$F2 666
3 TraesCS1A01G156400 chr1D 216399008 216404281 5273 False 1486.666667 3493 89.730667 1 3700 3 chr1D.!!$F1 3699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 1069 0.036858 AGAGGGAAAGAAGCGTCAGC 60.037 55.0 1.61 0.0 45.58 4.26 F
1462 1998 0.179000 CTACCAGGCAAGCTACCCAG 59.821 60.0 2.10 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2798 0.176910 TGCTGAAGTTGACGGACACA 59.823 50.0 0.00 0.0 0.00 3.72 R
3172 6141 0.178533 TCCGTGAACGTTTGAAGGGT 59.821 50.0 0.46 0.0 37.74 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.155826 CAGCATTTCACGGAGGAATTAACA 59.844 41.667 0.00 0.00 0.00 2.41
111 131 3.475494 ACACGTGGTGGCTGGTGA 61.475 61.111 21.57 0.00 37.94 4.02
112 132 2.972505 CACGTGGTGGCTGGTGAC 60.973 66.667 7.95 0.00 32.23 3.67
134 156 7.966753 GTGACAAGTGAGTATTCAGACGTATAA 59.033 37.037 0.00 0.00 32.98 0.98
135 157 8.683615 TGACAAGTGAGTATTCAGACGTATAAT 58.316 33.333 0.00 0.00 32.98 1.28
137 159 9.947669 ACAAGTGAGTATTCAGACGTATAATAC 57.052 33.333 14.66 14.66 36.68 1.89
151 178 7.120873 AGACGTATAATACTCATCCGTAGCATT 59.879 37.037 0.00 0.00 0.00 3.56
155 182 9.640963 GTATAATACTCATCCGTAGCATTTTCT 57.359 33.333 0.00 0.00 0.00 2.52
157 184 3.535561 ACTCATCCGTAGCATTTTCTGG 58.464 45.455 0.00 0.00 0.00 3.86
158 185 2.874701 CTCATCCGTAGCATTTTCTGGG 59.125 50.000 0.00 0.00 0.00 4.45
159 186 2.503765 TCATCCGTAGCATTTTCTGGGA 59.496 45.455 0.00 0.00 0.00 4.37
247 277 5.795939 CAGTCATCAGTAGTACGAAACACTC 59.204 44.000 0.00 0.00 0.00 3.51
303 339 4.110482 CCCAGTTGTGTACTACTATTCGC 58.890 47.826 0.00 0.00 34.56 4.70
318 366 3.129502 CGCCCATGCCACTGTCTG 61.130 66.667 0.00 0.00 0.00 3.51
324 372 2.079158 CCATGCCACTGTCTGTTGTAG 58.921 52.381 0.00 0.00 0.00 2.74
325 373 2.550855 CCATGCCACTGTCTGTTGTAGT 60.551 50.000 0.00 0.00 0.00 2.73
326 374 2.238942 TGCCACTGTCTGTTGTAGTG 57.761 50.000 0.00 0.00 41.04 2.74
327 375 1.484653 TGCCACTGTCTGTTGTAGTGT 59.515 47.619 0.00 0.00 40.04 3.55
328 376 2.093181 TGCCACTGTCTGTTGTAGTGTT 60.093 45.455 0.00 0.00 40.04 3.32
329 377 2.287915 GCCACTGTCTGTTGTAGTGTTG 59.712 50.000 0.00 0.00 40.04 3.33
394 910 6.147000 GCTTAGAGCATGGTTAATAGAAGAGC 59.853 42.308 0.00 0.00 41.89 4.09
395 911 4.967036 AGAGCATGGTTAATAGAAGAGCC 58.033 43.478 0.00 0.00 0.00 4.70
396 912 3.733337 AGCATGGTTAATAGAAGAGCCG 58.267 45.455 0.00 0.00 0.00 5.52
397 913 2.808543 GCATGGTTAATAGAAGAGCCGG 59.191 50.000 0.00 0.00 0.00 6.13
398 914 2.614829 TGGTTAATAGAAGAGCCGGC 57.385 50.000 21.89 21.89 0.00 6.13
399 915 1.834896 TGGTTAATAGAAGAGCCGGCA 59.165 47.619 31.54 6.82 0.00 5.69
401 917 1.867865 GTTAATAGAAGAGCCGGCAGC 59.132 52.381 31.54 20.49 44.25 5.25
411 927 3.774528 CCGGCAGCTGGCTCTGTA 61.775 66.667 34.13 0.00 44.01 2.74
412 928 2.510238 CGGCAGCTGGCTCTGTAC 60.510 66.667 34.13 6.93 44.01 2.90
413 929 2.985456 GGCAGCTGGCTCTGTACT 59.015 61.111 31.40 0.00 44.01 2.73
414 930 1.153469 GGCAGCTGGCTCTGTACTC 60.153 63.158 31.40 2.45 44.01 2.59
415 931 1.593787 GCAGCTGGCTCTGTACTCA 59.406 57.895 17.12 0.00 40.25 3.41
416 932 0.177604 GCAGCTGGCTCTGTACTCAT 59.822 55.000 17.12 0.00 40.25 2.90
417 933 1.937278 CAGCTGGCTCTGTACTCATG 58.063 55.000 5.57 0.00 0.00 3.07
418 934 0.177604 AGCTGGCTCTGTACTCATGC 59.822 55.000 0.00 0.00 0.00 4.06
419 935 0.813210 GCTGGCTCTGTACTCATGCC 60.813 60.000 11.05 11.05 40.70 4.40
420 936 0.538584 CTGGCTCTGTACTCATGCCA 59.461 55.000 16.86 16.86 44.39 4.92
422 938 1.134310 TGGCTCTGTACTCATGCCATG 60.134 52.381 14.89 0.00 43.01 3.66
423 939 1.134280 GGCTCTGTACTCATGCCATGT 60.134 52.381 4.31 0.00 40.33 3.21
424 940 2.208431 GCTCTGTACTCATGCCATGTC 58.792 52.381 4.31 0.00 0.00 3.06
425 941 2.419159 GCTCTGTACTCATGCCATGTCA 60.419 50.000 4.31 0.47 0.00 3.58
426 942 3.743584 GCTCTGTACTCATGCCATGTCAT 60.744 47.826 4.31 0.00 0.00 3.06
427 943 4.502087 GCTCTGTACTCATGCCATGTCATA 60.502 45.833 4.31 0.00 0.00 2.15
428 944 5.791666 CTCTGTACTCATGCCATGTCATAT 58.208 41.667 4.31 0.00 0.00 1.78
429 945 6.573094 GCTCTGTACTCATGCCATGTCATATA 60.573 42.308 4.31 0.00 0.00 0.86
430 946 7.486407 TCTGTACTCATGCCATGTCATATAT 57.514 36.000 4.31 0.00 0.00 0.86
432 948 8.689972 TCTGTACTCATGCCATGTCATATATAG 58.310 37.037 4.31 0.00 0.00 1.31
433 949 7.267857 TGTACTCATGCCATGTCATATATAGC 58.732 38.462 4.31 0.00 0.00 2.97
437 953 6.724351 TCATGCCATGTCATATATAGCCTTT 58.276 36.000 4.31 0.00 0.00 3.11
438 954 6.600427 TCATGCCATGTCATATATAGCCTTTG 59.400 38.462 4.31 0.00 0.00 2.77
439 955 5.879763 TGCCATGTCATATATAGCCTTTGT 58.120 37.500 0.00 0.00 0.00 2.83
440 956 5.706833 TGCCATGTCATATATAGCCTTTGTG 59.293 40.000 0.00 0.00 0.00 3.33
441 957 5.939883 GCCATGTCATATATAGCCTTTGTGA 59.060 40.000 0.00 0.00 0.00 3.58
442 958 6.430925 GCCATGTCATATATAGCCTTTGTGAA 59.569 38.462 0.00 0.00 0.00 3.18
443 959 7.040478 GCCATGTCATATATAGCCTTTGTGAAA 60.040 37.037 0.00 0.00 0.00 2.69
444 960 8.849168 CCATGTCATATATAGCCTTTGTGAAAA 58.151 33.333 0.00 0.00 0.00 2.29
467 983 5.567138 AAATCGCATATAATAAGGCTGGC 57.433 39.130 0.00 0.00 0.00 4.85
468 984 2.616960 TCGCATATAATAAGGCTGGCG 58.383 47.619 0.00 0.00 44.09 5.69
469 985 2.028476 TCGCATATAATAAGGCTGGCGT 60.028 45.455 0.00 0.00 43.31 5.68
470 986 2.094258 CGCATATAATAAGGCTGGCGTG 59.906 50.000 0.00 0.00 38.56 5.34
471 987 3.074412 GCATATAATAAGGCTGGCGTGT 58.926 45.455 0.00 0.00 0.00 4.49
474 990 5.163854 GCATATAATAAGGCTGGCGTGTAAG 60.164 44.000 0.00 0.00 0.00 2.34
475 991 2.781681 AATAAGGCTGGCGTGTAAGT 57.218 45.000 0.00 0.00 0.00 2.24
476 992 2.781681 ATAAGGCTGGCGTGTAAGTT 57.218 45.000 0.00 0.00 0.00 2.66
478 994 0.889186 AAGGCTGGCGTGTAAGTTGG 60.889 55.000 0.00 0.00 0.00 3.77
479 995 2.561373 GCTGGCGTGTAAGTTGGC 59.439 61.111 0.00 0.00 0.00 4.52
480 996 1.966451 GCTGGCGTGTAAGTTGGCT 60.966 57.895 0.00 0.00 0.00 4.75
481 997 1.868997 CTGGCGTGTAAGTTGGCTG 59.131 57.895 0.00 0.00 0.00 4.85
484 1000 1.076332 GGCGTGTAAGTTGGCTGTAG 58.924 55.000 0.00 0.00 0.00 2.74
485 1001 0.442699 GCGTGTAAGTTGGCTGTAGC 59.557 55.000 0.00 0.00 41.14 3.58
486 1002 1.790755 CGTGTAAGTTGGCTGTAGCA 58.209 50.000 6.18 0.00 44.36 3.49
487 1003 2.139917 CGTGTAAGTTGGCTGTAGCAA 58.860 47.619 6.18 0.00 44.36 3.91
488 1004 2.742053 CGTGTAAGTTGGCTGTAGCAAT 59.258 45.455 6.18 0.00 44.36 3.56
490 1006 4.390603 CGTGTAAGTTGGCTGTAGCAATTA 59.609 41.667 6.18 0.00 44.36 1.40
491 1007 5.106869 CGTGTAAGTTGGCTGTAGCAATTAA 60.107 40.000 6.18 0.00 44.36 1.40
492 1008 6.403200 CGTGTAAGTTGGCTGTAGCAATTAAT 60.403 38.462 6.18 0.00 44.36 1.40
493 1009 6.747280 GTGTAAGTTGGCTGTAGCAATTAATG 59.253 38.462 6.18 0.00 44.36 1.90
495 1011 5.982890 AGTTGGCTGTAGCAATTAATGTT 57.017 34.783 6.18 0.00 44.36 2.71
496 1012 6.345096 AGTTGGCTGTAGCAATTAATGTTT 57.655 33.333 6.18 0.00 44.36 2.83
506 1022 4.593157 GCAATTAATGTTTGCATGCATGG 58.407 39.130 27.34 10.03 46.78 3.66
507 1023 4.496673 GCAATTAATGTTTGCATGCATGGG 60.497 41.667 27.34 4.09 46.78 4.00
508 1024 3.977134 TTAATGTTTGCATGCATGGGT 57.023 38.095 27.34 8.82 35.15 4.51
510 1026 3.977134 AATGTTTGCATGCATGGGTAA 57.023 38.095 27.34 9.65 35.15 2.85
511 1027 3.530265 ATGTTTGCATGCATGGGTAAG 57.470 42.857 27.34 1.69 33.37 2.34
512 1028 2.523245 TGTTTGCATGCATGGGTAAGA 58.477 42.857 27.34 8.07 0.00 2.10
514 1030 3.514706 TGTTTGCATGCATGGGTAAGAAT 59.485 39.130 27.34 0.00 0.00 2.40
521 1037 2.529151 GCATGGGTAAGAATGCAAACG 58.471 47.619 0.00 0.00 46.75 3.60
522 1038 2.529151 CATGGGTAAGAATGCAAACGC 58.471 47.619 0.00 0.00 0.00 4.84
523 1039 1.610363 TGGGTAAGAATGCAAACGCA 58.390 45.000 0.00 0.00 45.23 5.24
539 1055 2.094675 ACGCATTTGATTGGAAGAGGG 58.905 47.619 0.00 0.00 0.00 4.30
540 1056 2.290896 ACGCATTTGATTGGAAGAGGGA 60.291 45.455 0.00 0.00 0.00 4.20
541 1057 2.754552 CGCATTTGATTGGAAGAGGGAA 59.245 45.455 0.00 0.00 0.00 3.97
542 1058 3.193267 CGCATTTGATTGGAAGAGGGAAA 59.807 43.478 0.00 0.00 0.00 3.13
543 1059 4.676196 CGCATTTGATTGGAAGAGGGAAAG 60.676 45.833 0.00 0.00 0.00 2.62
545 1061 5.047092 GCATTTGATTGGAAGAGGGAAAGAA 60.047 40.000 0.00 0.00 0.00 2.52
546 1062 6.628185 CATTTGATTGGAAGAGGGAAAGAAG 58.372 40.000 0.00 0.00 0.00 2.85
547 1063 3.690460 TGATTGGAAGAGGGAAAGAAGC 58.310 45.455 0.00 0.00 0.00 3.86
548 1064 2.185004 TTGGAAGAGGGAAAGAAGCG 57.815 50.000 0.00 0.00 0.00 4.68
549 1065 1.056660 TGGAAGAGGGAAAGAAGCGT 58.943 50.000 0.00 0.00 0.00 5.07
550 1066 1.002087 TGGAAGAGGGAAAGAAGCGTC 59.998 52.381 0.00 0.00 0.00 5.19
552 1068 2.342179 GAAGAGGGAAAGAAGCGTCAG 58.658 52.381 1.61 0.00 0.00 3.51
553 1069 0.036858 AGAGGGAAAGAAGCGTCAGC 60.037 55.000 1.61 0.00 45.58 4.26
554 1070 1.003233 AGGGAAAGAAGCGTCAGCC 60.003 57.895 1.61 0.00 46.67 4.85
556 1072 0.606673 GGGAAAGAAGCGTCAGCCTT 60.607 55.000 1.61 0.00 46.67 4.35
557 1073 0.799393 GGAAAGAAGCGTCAGCCTTC 59.201 55.000 1.61 0.00 46.67 3.46
558 1074 1.512926 GAAAGAAGCGTCAGCCTTCA 58.487 50.000 1.61 0.00 46.67 3.02
559 1075 1.462670 GAAAGAAGCGTCAGCCTTCAG 59.537 52.381 1.61 0.00 46.67 3.02
560 1076 0.952984 AAGAAGCGTCAGCCTTCAGC 60.953 55.000 1.61 0.00 46.67 4.26
561 1077 2.359230 AAGCGTCAGCCTTCAGCC 60.359 61.111 0.00 0.00 46.67 4.85
562 1078 3.909086 AAGCGTCAGCCTTCAGCCC 62.909 63.158 0.00 0.00 46.67 5.19
564 1080 3.710722 CGTCAGCCTTCAGCCCCT 61.711 66.667 0.00 0.00 45.47 4.79
565 1081 2.045536 GTCAGCCTTCAGCCCCTG 60.046 66.667 0.00 0.00 45.47 4.45
566 1082 4.039092 TCAGCCTTCAGCCCCTGC 62.039 66.667 0.00 0.00 45.47 4.85
567 1083 4.355720 CAGCCTTCAGCCCCTGCA 62.356 66.667 0.00 0.00 45.47 4.41
568 1084 3.345028 AGCCTTCAGCCCCTGCAT 61.345 61.111 0.00 0.00 45.47 3.96
569 1085 3.145551 GCCTTCAGCCCCTGCATG 61.146 66.667 0.00 0.00 41.13 4.06
570 1086 3.145551 CCTTCAGCCCCTGCATGC 61.146 66.667 11.82 11.82 41.13 4.06
571 1087 2.361992 CTTCAGCCCCTGCATGCA 60.362 61.111 21.29 21.29 41.13 3.96
572 1088 1.756950 CTTCAGCCCCTGCATGCAT 60.757 57.895 22.97 2.13 41.13 3.96
573 1089 1.305465 TTCAGCCCCTGCATGCATT 60.305 52.632 22.97 1.84 41.13 3.56
574 1090 1.324740 TTCAGCCCCTGCATGCATTC 61.325 55.000 22.97 10.41 41.13 2.67
575 1091 1.756950 CAGCCCCTGCATGCATTCT 60.757 57.895 22.97 12.54 41.13 2.40
576 1092 1.001248 AGCCCCTGCATGCATTCTT 59.999 52.632 22.97 3.37 41.13 2.52
577 1093 0.616679 AGCCCCTGCATGCATTCTTT 60.617 50.000 22.97 4.53 41.13 2.52
578 1094 0.251073 GCCCCTGCATGCATTCTTTT 59.749 50.000 22.97 0.00 37.47 2.27
579 1095 1.741394 GCCCCTGCATGCATTCTTTTC 60.741 52.381 22.97 3.37 37.47 2.29
580 1096 1.829222 CCCCTGCATGCATTCTTTTCT 59.171 47.619 22.97 0.00 0.00 2.52
581 1097 2.159142 CCCCTGCATGCATTCTTTTCTC 60.159 50.000 22.97 0.00 0.00 2.87
582 1098 2.758979 CCCTGCATGCATTCTTTTCTCT 59.241 45.455 22.97 0.00 0.00 3.10
583 1099 3.181489 CCCTGCATGCATTCTTTTCTCTC 60.181 47.826 22.97 0.00 0.00 3.20
584 1100 3.487042 CCTGCATGCATTCTTTTCTCTCG 60.487 47.826 22.97 4.20 0.00 4.04
585 1101 3.337358 TGCATGCATTCTTTTCTCTCGA 58.663 40.909 18.46 0.00 0.00 4.04
586 1102 3.373130 TGCATGCATTCTTTTCTCTCGAG 59.627 43.478 18.46 5.93 0.00 4.04
587 1103 3.373439 GCATGCATTCTTTTCTCTCGAGT 59.627 43.478 14.21 0.00 0.00 4.18
588 1104 4.727162 GCATGCATTCTTTTCTCTCGAGTG 60.727 45.833 14.21 10.53 0.00 3.51
589 1105 2.738846 TGCATTCTTTTCTCTCGAGTGC 59.261 45.455 13.13 11.77 39.78 4.40
590 1106 2.738846 GCATTCTTTTCTCTCGAGTGCA 59.261 45.455 13.13 0.00 39.34 4.57
591 1107 3.181522 GCATTCTTTTCTCTCGAGTGCAG 60.182 47.826 13.13 2.51 39.34 4.41
592 1108 3.735237 TTCTTTTCTCTCGAGTGCAGT 57.265 42.857 13.13 0.00 0.00 4.40
593 1109 3.018598 TCTTTTCTCTCGAGTGCAGTG 57.981 47.619 13.13 0.91 0.00 3.66
594 1110 1.458827 CTTTTCTCTCGAGTGCAGTGC 59.541 52.381 13.13 8.58 0.00 4.40
595 1111 0.676184 TTTCTCTCGAGTGCAGTGCT 59.324 50.000 17.60 0.00 0.00 4.40
596 1112 1.534729 TTCTCTCGAGTGCAGTGCTA 58.465 50.000 17.60 0.00 0.00 3.49
597 1113 0.805614 TCTCTCGAGTGCAGTGCTAC 59.194 55.000 17.60 12.61 0.00 3.58
598 1114 0.523519 CTCTCGAGTGCAGTGCTACA 59.476 55.000 17.60 0.00 0.00 2.74
599 1115 0.523519 TCTCGAGTGCAGTGCTACAG 59.476 55.000 17.60 10.72 0.00 2.74
600 1116 1.075425 CTCGAGTGCAGTGCTACAGC 61.075 60.000 17.60 8.21 42.50 4.40
601 1117 2.097038 CGAGTGCAGTGCTACAGCC 61.097 63.158 17.60 5.87 41.18 4.85
602 1118 2.047844 AGTGCAGTGCTACAGCCG 60.048 61.111 17.60 0.00 41.18 5.52
603 1119 3.121030 GTGCAGTGCTACAGCCGG 61.121 66.667 17.60 0.00 41.18 6.13
604 1120 4.393155 TGCAGTGCTACAGCCGGG 62.393 66.667 17.60 0.00 41.18 5.73
608 1124 4.530857 GTGCTACAGCCGGGCGAT 62.531 66.667 14.39 8.39 41.18 4.58
609 1125 3.781307 TGCTACAGCCGGGCGATT 61.781 61.111 14.39 4.27 41.18 3.34
610 1126 3.272334 GCTACAGCCGGGCGATTG 61.272 66.667 14.39 9.37 34.31 2.67
611 1127 3.272334 CTACAGCCGGGCGATTGC 61.272 66.667 14.39 0.00 41.71 3.56
634 1150 3.854669 CGCCGGCCTCTTCCTCAT 61.855 66.667 23.46 0.00 0.00 2.90
635 1151 2.592308 GCCGGCCTCTTCCTCATT 59.408 61.111 18.11 0.00 0.00 2.57
636 1152 1.524849 GCCGGCCTCTTCCTCATTC 60.525 63.158 18.11 0.00 0.00 2.67
637 1153 1.147153 CCGGCCTCTTCCTCATTCC 59.853 63.158 0.00 0.00 0.00 3.01
638 1154 1.626356 CCGGCCTCTTCCTCATTCCA 61.626 60.000 0.00 0.00 0.00 3.53
639 1155 0.253044 CGGCCTCTTCCTCATTCCAA 59.747 55.000 0.00 0.00 0.00 3.53
640 1156 1.756430 GGCCTCTTCCTCATTCCAAC 58.244 55.000 0.00 0.00 0.00 3.77
641 1157 1.283321 GGCCTCTTCCTCATTCCAACT 59.717 52.381 0.00 0.00 0.00 3.16
642 1158 2.291217 GGCCTCTTCCTCATTCCAACTT 60.291 50.000 0.00 0.00 0.00 2.66
643 1159 3.425659 GCCTCTTCCTCATTCCAACTTT 58.574 45.455 0.00 0.00 0.00 2.66
644 1160 3.441922 GCCTCTTCCTCATTCCAACTTTC 59.558 47.826 0.00 0.00 0.00 2.62
645 1161 4.809007 GCCTCTTCCTCATTCCAACTTTCT 60.809 45.833 0.00 0.00 0.00 2.52
646 1162 4.940654 CCTCTTCCTCATTCCAACTTTCTC 59.059 45.833 0.00 0.00 0.00 2.87
647 1163 5.280419 CCTCTTCCTCATTCCAACTTTCTCT 60.280 44.000 0.00 0.00 0.00 3.10
648 1164 5.799213 TCTTCCTCATTCCAACTTTCTCTC 58.201 41.667 0.00 0.00 0.00 3.20
649 1165 5.545723 TCTTCCTCATTCCAACTTTCTCTCT 59.454 40.000 0.00 0.00 0.00 3.10
650 1166 5.413309 TCCTCATTCCAACTTTCTCTCTC 57.587 43.478 0.00 0.00 0.00 3.20
651 1167 4.223923 TCCTCATTCCAACTTTCTCTCTCC 59.776 45.833 0.00 0.00 0.00 3.71
652 1168 4.224818 CCTCATTCCAACTTTCTCTCTCCT 59.775 45.833 0.00 0.00 0.00 3.69
653 1169 5.413309 TCATTCCAACTTTCTCTCTCCTC 57.587 43.478 0.00 0.00 0.00 3.71
654 1170 4.223923 TCATTCCAACTTTCTCTCTCCTCC 59.776 45.833 0.00 0.00 0.00 4.30
655 1171 3.260269 TCCAACTTTCTCTCTCCTCCA 57.740 47.619 0.00 0.00 0.00 3.86
656 1172 3.169099 TCCAACTTTCTCTCTCCTCCAG 58.831 50.000 0.00 0.00 0.00 3.86
657 1173 2.354604 CCAACTTTCTCTCTCCTCCAGC 60.355 54.545 0.00 0.00 0.00 4.85
658 1174 2.566724 CAACTTTCTCTCTCCTCCAGCT 59.433 50.000 0.00 0.00 0.00 4.24
659 1175 3.748645 ACTTTCTCTCTCCTCCAGCTA 57.251 47.619 0.00 0.00 0.00 3.32
660 1176 3.631250 ACTTTCTCTCTCCTCCAGCTAG 58.369 50.000 0.00 0.00 0.00 3.42
661 1177 3.011257 ACTTTCTCTCTCCTCCAGCTAGT 59.989 47.826 0.00 0.00 0.00 2.57
662 1178 4.228666 ACTTTCTCTCTCCTCCAGCTAGTA 59.771 45.833 0.00 0.00 0.00 1.82
663 1179 5.103686 ACTTTCTCTCTCCTCCAGCTAGTAT 60.104 44.000 0.00 0.00 0.00 2.12
664 1180 5.396057 TTCTCTCTCCTCCAGCTAGTATT 57.604 43.478 0.00 0.00 0.00 1.89
665 1181 5.396057 TCTCTCTCCTCCAGCTAGTATTT 57.604 43.478 0.00 0.00 0.00 1.40
666 1182 5.772004 TCTCTCTCCTCCAGCTAGTATTTT 58.228 41.667 0.00 0.00 0.00 1.82
667 1183 6.198639 TCTCTCTCCTCCAGCTAGTATTTTT 58.801 40.000 0.00 0.00 0.00 1.94
668 1184 6.097554 TCTCTCTCCTCCAGCTAGTATTTTTG 59.902 42.308 0.00 0.00 0.00 2.44
669 1185 4.770795 TCTCCTCCAGCTAGTATTTTTGC 58.229 43.478 0.00 0.00 0.00 3.68
670 1186 4.471386 TCTCCTCCAGCTAGTATTTTTGCT 59.529 41.667 0.00 0.00 36.04 3.91
671 1187 5.661312 TCTCCTCCAGCTAGTATTTTTGCTA 59.339 40.000 0.00 0.00 34.10 3.49
672 1188 6.156256 TCTCCTCCAGCTAGTATTTTTGCTAA 59.844 38.462 0.00 0.00 34.10 3.09
673 1189 6.900194 TCCTCCAGCTAGTATTTTTGCTAAT 58.100 36.000 0.00 0.00 34.10 1.73
674 1190 6.992715 TCCTCCAGCTAGTATTTTTGCTAATC 59.007 38.462 0.00 0.00 34.10 1.75
675 1191 6.995091 CCTCCAGCTAGTATTTTTGCTAATCT 59.005 38.462 0.00 0.00 34.10 2.40
676 1192 7.041508 CCTCCAGCTAGTATTTTTGCTAATCTG 60.042 40.741 0.00 0.00 34.10 2.90
677 1193 6.767902 TCCAGCTAGTATTTTTGCTAATCTGG 59.232 38.462 0.00 0.00 38.26 3.86
678 1194 6.767902 CCAGCTAGTATTTTTGCTAATCTGGA 59.232 38.462 0.00 0.00 38.68 3.86
679 1195 7.254932 CCAGCTAGTATTTTTGCTAATCTGGAC 60.255 40.741 0.00 0.00 38.68 4.02
680 1196 7.280876 CAGCTAGTATTTTTGCTAATCTGGACA 59.719 37.037 0.00 0.00 34.10 4.02
681 1197 7.497249 AGCTAGTATTTTTGCTAATCTGGACAG 59.503 37.037 0.00 0.00 33.64 3.51
682 1198 6.442513 AGTATTTTTGCTAATCTGGACAGC 57.557 37.500 0.00 0.00 35.82 4.40
683 1199 6.183347 AGTATTTTTGCTAATCTGGACAGCT 58.817 36.000 0.00 0.00 36.26 4.24
684 1200 5.990120 ATTTTTGCTAATCTGGACAGCTT 57.010 34.783 0.00 0.00 36.26 3.74
685 1201 7.829211 AGTATTTTTGCTAATCTGGACAGCTTA 59.171 33.333 0.00 0.00 36.26 3.09
686 1202 7.651027 ATTTTTGCTAATCTGGACAGCTTAT 57.349 32.000 0.00 0.00 36.26 1.73
687 1203 8.752005 ATTTTTGCTAATCTGGACAGCTTATA 57.248 30.769 0.00 0.00 36.26 0.98
688 1204 7.792374 TTTTGCTAATCTGGACAGCTTATAG 57.208 36.000 0.00 0.00 36.26 1.31
689 1205 4.887748 TGCTAATCTGGACAGCTTATAGC 58.112 43.478 13.51 13.51 42.84 2.97
690 1206 4.249661 GCTAATCTGGACAGCTTATAGCC 58.750 47.826 11.16 0.00 43.77 3.93
691 1207 4.020662 GCTAATCTGGACAGCTTATAGCCT 60.021 45.833 11.16 0.00 43.77 4.58
692 1208 4.348863 AATCTGGACAGCTTATAGCCTG 57.651 45.455 0.00 1.44 43.77 4.85
693 1209 1.414181 TCTGGACAGCTTATAGCCTGC 59.586 52.381 0.00 0.00 43.77 4.85
694 1210 1.415659 CTGGACAGCTTATAGCCTGCT 59.584 52.381 0.00 0.00 43.77 4.24
700 1216 2.392662 AGCTTATAGCCTGCTGACTCA 58.607 47.619 0.97 0.00 43.77 3.41
701 1217 2.364970 AGCTTATAGCCTGCTGACTCAG 59.635 50.000 0.97 1.21 43.77 3.35
707 1223 3.450028 CCTGCTGACTCAGGCTTAC 57.550 57.895 8.17 0.00 46.11 2.34
708 1224 0.901124 CCTGCTGACTCAGGCTTACT 59.099 55.000 8.17 0.00 46.11 2.24
709 1225 2.103373 CCTGCTGACTCAGGCTTACTA 58.897 52.381 8.17 0.00 46.11 1.82
710 1226 2.697751 CCTGCTGACTCAGGCTTACTAT 59.302 50.000 8.17 0.00 46.11 2.12
711 1227 3.891977 CCTGCTGACTCAGGCTTACTATA 59.108 47.826 8.17 0.00 46.11 1.31
712 1228 4.261825 CCTGCTGACTCAGGCTTACTATAC 60.262 50.000 8.17 0.00 46.11 1.47
713 1229 4.537751 TGCTGACTCAGGCTTACTATACT 58.462 43.478 8.17 0.00 31.21 2.12
714 1230 4.956700 TGCTGACTCAGGCTTACTATACTT 59.043 41.667 8.17 0.00 31.21 2.24
715 1231 5.163509 TGCTGACTCAGGCTTACTATACTTG 60.164 44.000 8.17 0.00 31.21 3.16
716 1232 5.263968 TGACTCAGGCTTACTATACTTGC 57.736 43.478 0.00 0.00 0.00 4.01
717 1233 4.956700 TGACTCAGGCTTACTATACTTGCT 59.043 41.667 0.00 0.00 0.00 3.91
754 1270 6.665465 ACTAAGCCACGTGAAACTTTAATTC 58.335 36.000 19.30 0.00 31.75 2.17
778 1294 0.311790 CACTGCTTGAACGTGGCAAT 59.688 50.000 4.79 0.00 35.49 3.56
831 1348 0.896940 TCCCTAGGCGAACTCACGTT 60.897 55.000 2.05 0.00 35.68 3.99
893 1410 0.975040 ACCATCTTCTGCTCGCTCCT 60.975 55.000 0.00 0.00 0.00 3.69
894 1411 1.035923 CCATCTTCTGCTCGCTCCTA 58.964 55.000 0.00 0.00 0.00 2.94
895 1412 1.269517 CCATCTTCTGCTCGCTCCTAC 60.270 57.143 0.00 0.00 0.00 3.18
1080 1604 1.269166 CGTCGTCAGTAGCCATTGTC 58.731 55.000 0.00 0.00 0.00 3.18
1141 1668 6.152932 ACTTCGGTTAGTACAACTTTCAGA 57.847 37.500 0.00 0.00 0.00 3.27
1223 1754 6.016693 TGCACAAAAAGGACATTTCGATCTTA 60.017 34.615 0.00 0.00 0.00 2.10
1224 1755 6.305638 GCACAAAAAGGACATTTCGATCTTAC 59.694 38.462 0.00 0.00 0.00 2.34
1236 1767 9.003658 ACATTTCGATCTTACAACTTTCTGATT 57.996 29.630 0.00 0.00 0.00 2.57
1242 1773 8.070171 CGATCTTACAACTTTCTGATTTGTGTT 58.930 33.333 9.04 0.00 35.18 3.32
1248 1779 6.311200 ACAACTTTCTGATTTGTGTTTGCTTC 59.689 34.615 0.00 0.00 32.21 3.86
1255 1786 7.908230 TCTGATTTGTGTTTGCTTCAAATTTC 58.092 30.769 0.00 0.00 40.38 2.17
1278 1810 2.354656 GCAGCGACGACACTGACA 60.355 61.111 7.09 0.00 35.90 3.58
1288 1820 1.510480 GACACTGACAAGCTGGCACC 61.510 60.000 0.00 0.00 28.59 5.01
1311 1843 0.880278 TGGTGACTTTCTGCACGCTC 60.880 55.000 0.00 0.00 35.91 5.03
1392 1924 2.827921 CTCCTTTGGGTTTCTCAATGGG 59.172 50.000 12.25 5.44 38.90 4.00
1440 1972 2.301346 CTTGGCTTCAACTCAGTTGGT 58.699 47.619 17.71 0.00 42.99 3.67
1456 1992 3.652581 GGTTTCTACCAGGCAAGCT 57.347 52.632 0.00 0.00 44.36 3.74
1462 1998 0.179000 CTACCAGGCAAGCTACCCAG 59.821 60.000 2.10 0.00 0.00 4.45
1484 2020 4.831710 AGACTGCTGATGATAGCTCATACA 59.168 41.667 0.00 0.00 42.27 2.29
1485 2021 5.047872 AGACTGCTGATGATAGCTCATACAG 60.048 44.000 0.00 0.76 42.27 2.74
1486 2022 4.588106 ACTGCTGATGATAGCTCATACAGT 59.412 41.667 10.51 10.51 42.27 3.55
1487 2023 5.772169 ACTGCTGATGATAGCTCATACAGTA 59.228 40.000 12.98 9.51 42.69 2.74
1488 2024 6.018589 TGCTGATGATAGCTCATACAGTAC 57.981 41.667 0.00 0.00 42.27 2.73
1522 2058 5.147162 GTTTTCTTACTCGTGGATTTGCTG 58.853 41.667 0.00 0.00 0.00 4.41
1530 2066 2.425312 TCGTGGATTTGCTGTGTTTGTT 59.575 40.909 0.00 0.00 0.00 2.83
1563 2099 3.714280 TGACCAAGCTGGCTATTATACCA 59.286 43.478 0.00 0.00 42.67 3.25
1634 2170 3.790091 TCTCAGATTCCTTCTCGCATTG 58.210 45.455 0.00 0.00 29.93 2.82
1656 2206 4.019174 GGGCTTTTTCCTGATCATCTTGA 58.981 43.478 0.00 0.00 0.00 3.02
1662 2212 6.653526 TTTTCCTGATCATCTTGAAGCAAA 57.346 33.333 0.00 0.00 0.00 3.68
1686 2236 1.089920 GCGTTTCTCATGCTCCACAT 58.910 50.000 0.00 0.00 40.66 3.21
1695 2245 5.748402 TCTCATGCTCCACATTCATTAACT 58.252 37.500 0.00 0.00 36.64 2.24
1756 2306 1.153086 GGGAGTTGGCATCGCATCT 60.153 57.895 1.82 0.00 0.00 2.90
1789 2339 1.299773 GCTCAATCTCCTCGGCTCG 60.300 63.158 0.00 0.00 0.00 5.03
1856 2406 1.633915 ATCCTTCTGCTCTGCCCCTG 61.634 60.000 0.00 0.00 0.00 4.45
1970 2520 2.023673 TGAACAAAGCTGACCAACCAG 58.976 47.619 0.00 0.00 37.23 4.00
2127 2677 1.647213 CATTCGAAGTCGTGGTACGTG 59.353 52.381 3.35 0.00 43.14 4.49
2158 2711 0.664761 GCAGCAGCAAGAACTGAACA 59.335 50.000 0.00 0.00 40.25 3.18
2196 2752 0.953727 AATTTGAGCTGCGCTGAACA 59.046 45.000 19.32 13.30 39.88 3.18
2199 2755 0.953727 TTGAGCTGCGCTGAACAAAT 59.046 45.000 19.32 0.00 39.88 2.32
2223 2780 1.220749 GGCGCAGGTGTTCATCCTA 59.779 57.895 10.83 0.00 33.54 2.94
2511 3068 4.925646 GTCCGTACTTTTCCTGATACGTTT 59.074 41.667 0.00 0.00 38.95 3.60
2825 3382 6.630203 AGTAATGGTGGTATTGTAAGGTGA 57.370 37.500 0.00 0.00 0.00 4.02
2861 3418 7.761038 AAAAAGTTCTGGAAGTAATGTAGGG 57.239 36.000 0.00 0.00 33.76 3.53
2870 3427 4.383770 GGAAGTAATGTAGGGCAGCAAGTA 60.384 45.833 0.00 0.00 0.00 2.24
2910 3467 2.912542 TAGGGCAGGGATCTCGCG 60.913 66.667 0.00 0.00 0.00 5.87
2921 3478 0.726827 GATCTCGCGGAAATTGCACA 59.273 50.000 6.13 0.00 0.00 4.57
2932 3489 5.050159 GCGGAAATTGCACAAGAAATTTTCT 60.050 36.000 5.82 5.82 41.93 2.52
2996 3553 3.428163 GTTTACAAACGCGGAAAACAGT 58.572 40.909 12.47 1.30 31.85 3.55
2998 3555 0.099791 ACAAACGCGGAAAACAGTGG 59.900 50.000 12.47 0.00 0.00 4.00
3031 3588 1.604604 TTCCAGAGAAAACGCAAGGG 58.395 50.000 0.00 0.00 46.39 3.95
3074 3631 7.849496 CAACAGCTGCTAGAGAAATATTACAG 58.151 38.462 15.27 0.00 0.00 2.74
3142 6111 4.344102 TCTCTAATGCCCATGTAGGTGTAC 59.656 45.833 0.00 0.00 34.66 2.90
3170 6139 4.061596 GAGCATCTACAGCCAGTAAATCC 58.938 47.826 0.00 0.00 30.92 3.01
3171 6140 2.802816 GCATCTACAGCCAGTAAATCCG 59.197 50.000 0.00 0.00 30.92 4.18
3172 6141 3.492656 GCATCTACAGCCAGTAAATCCGA 60.493 47.826 0.00 0.00 30.92 4.55
3173 6142 3.795623 TCTACAGCCAGTAAATCCGAC 57.204 47.619 0.00 0.00 30.92 4.79
3174 6143 2.429610 TCTACAGCCAGTAAATCCGACC 59.570 50.000 0.00 0.00 30.92 4.79
3175 6144 0.252197 ACAGCCAGTAAATCCGACCC 59.748 55.000 0.00 0.00 0.00 4.46
3176 6145 0.541863 CAGCCAGTAAATCCGACCCT 59.458 55.000 0.00 0.00 0.00 4.34
3177 6146 1.065418 CAGCCAGTAAATCCGACCCTT 60.065 52.381 0.00 0.00 0.00 3.95
3178 6147 1.209747 AGCCAGTAAATCCGACCCTTC 59.790 52.381 0.00 0.00 0.00 3.46
3179 6148 1.065709 GCCAGTAAATCCGACCCTTCA 60.066 52.381 0.00 0.00 0.00 3.02
3180 6149 2.617021 GCCAGTAAATCCGACCCTTCAA 60.617 50.000 0.00 0.00 0.00 2.69
3181 6150 3.681593 CCAGTAAATCCGACCCTTCAAA 58.318 45.455 0.00 0.00 0.00 2.69
3182 6151 3.439129 CCAGTAAATCCGACCCTTCAAAC 59.561 47.826 0.00 0.00 0.00 2.93
3183 6152 3.124636 CAGTAAATCCGACCCTTCAAACG 59.875 47.826 0.00 0.00 0.00 3.60
3184 6153 2.265589 AAATCCGACCCTTCAAACGT 57.734 45.000 0.00 0.00 0.00 3.99
3185 6154 2.265589 AATCCGACCCTTCAAACGTT 57.734 45.000 0.00 0.00 0.00 3.99
3186 6155 1.804601 ATCCGACCCTTCAAACGTTC 58.195 50.000 0.00 0.00 0.00 3.95
3187 6156 0.464870 TCCGACCCTTCAAACGTTCA 59.535 50.000 0.00 0.00 0.00 3.18
3188 6157 0.584876 CCGACCCTTCAAACGTTCAC 59.415 55.000 0.00 0.00 0.00 3.18
3189 6158 0.231279 CGACCCTTCAAACGTTCACG 59.769 55.000 0.00 0.00 46.33 4.35
3190 6159 0.584876 GACCCTTCAAACGTTCACGG 59.415 55.000 0.00 0.00 44.95 4.94
3191 6160 0.178533 ACCCTTCAAACGTTCACGGA 59.821 50.000 0.00 0.00 44.95 4.69
3192 6161 0.584876 CCCTTCAAACGTTCACGGAC 59.415 55.000 0.00 0.00 44.95 4.79
3210 6179 2.026590 GTGACCGGACACGTTCGT 59.973 61.111 20.81 0.00 33.87 3.85
3211 6180 2.026445 TGACCGGACACGTTCGTG 59.974 61.111 21.13 21.13 41.47 4.35
3212 6181 2.732094 GACCGGACACGTTCGTGG 60.732 66.667 25.14 12.66 40.16 4.94
3213 6182 3.198236 GACCGGACACGTTCGTGGA 62.198 63.158 25.14 0.00 40.16 4.02
3214 6183 2.430244 CCGGACACGTTCGTGGAG 60.430 66.667 25.14 16.36 40.16 3.86
3215 6184 3.103911 CGGACACGTTCGTGGAGC 61.104 66.667 25.14 15.30 40.16 4.70
3216 6185 2.028484 GGACACGTTCGTGGAGCA 59.972 61.111 25.14 0.00 40.16 4.26
3217 6186 1.374252 GGACACGTTCGTGGAGCAT 60.374 57.895 25.14 7.56 40.16 3.79
3218 6187 1.352156 GGACACGTTCGTGGAGCATC 61.352 60.000 25.14 14.73 40.16 3.91
3219 6188 0.388649 GACACGTTCGTGGAGCATCT 60.389 55.000 25.14 6.24 40.16 2.90
3220 6189 0.885879 ACACGTTCGTGGAGCATCTA 59.114 50.000 25.14 0.00 40.16 1.98
3221 6190 1.476891 ACACGTTCGTGGAGCATCTAT 59.523 47.619 25.14 2.54 40.16 1.98
3222 6191 2.686405 ACACGTTCGTGGAGCATCTATA 59.314 45.455 25.14 0.00 40.16 1.31
3258 6227 4.595538 TCAAACGCCCGCAGACGT 62.596 61.111 0.00 0.00 41.45 4.34
3287 6256 1.007734 GTTCGCTGACAGTGACCGA 60.008 57.895 18.17 8.41 33.97 4.69
3315 6284 9.950680 CACGCCTTAAATATTTGATTCTACAAT 57.049 29.630 11.05 0.00 0.00 2.71
3328 6297 6.639563 TGATTCTACAATCGGACATCTCAAA 58.360 36.000 0.00 0.00 41.41 2.69
3329 6298 6.758416 TGATTCTACAATCGGACATCTCAAAG 59.242 38.462 0.00 0.00 41.41 2.77
3330 6299 5.661056 TCTACAATCGGACATCTCAAAGT 57.339 39.130 0.00 0.00 0.00 2.66
3331 6300 6.769134 TCTACAATCGGACATCTCAAAGTA 57.231 37.500 0.00 0.00 0.00 2.24
3332 6301 6.796426 TCTACAATCGGACATCTCAAAGTAG 58.204 40.000 0.00 0.00 0.00 2.57
3333 6302 5.661056 ACAATCGGACATCTCAAAGTAGA 57.339 39.130 0.00 0.00 0.00 2.59
3334 6303 6.037786 ACAATCGGACATCTCAAAGTAGAA 57.962 37.500 0.00 0.00 0.00 2.10
3335 6304 6.464222 ACAATCGGACATCTCAAAGTAGAAA 58.536 36.000 0.00 0.00 0.00 2.52
3336 6305 6.369065 ACAATCGGACATCTCAAAGTAGAAAC 59.631 38.462 0.00 0.00 0.00 2.78
3337 6306 5.462530 TCGGACATCTCAAAGTAGAAACA 57.537 39.130 0.00 0.00 0.00 2.83
3338 6307 6.037786 TCGGACATCTCAAAGTAGAAACAT 57.962 37.500 0.00 0.00 0.00 2.71
3339 6308 6.100004 TCGGACATCTCAAAGTAGAAACATC 58.900 40.000 0.00 0.00 0.00 3.06
3340 6309 5.869344 CGGACATCTCAAAGTAGAAACATCA 59.131 40.000 0.00 0.00 0.00 3.07
3341 6310 6.368791 CGGACATCTCAAAGTAGAAACATCAA 59.631 38.462 0.00 0.00 0.00 2.57
3416 6396 2.153401 CCCCAGAGTGTTGGTCCCA 61.153 63.158 0.00 0.00 36.45 4.37
3423 6403 4.402528 TGTTGGTCCCATCGCCGG 62.403 66.667 0.00 0.00 0.00 6.13
3460 6440 4.148825 GGACACGAGCCGGCTCAT 62.149 66.667 45.57 36.00 42.86 2.90
3493 6473 1.597302 CGCCATCTCTCATGCCCTG 60.597 63.158 0.00 0.00 0.00 4.45
3495 6475 1.228184 CCATCTCTCATGCCCTGCC 60.228 63.158 0.00 0.00 0.00 4.85
3512 6492 1.684049 CCCTTCCTCGTCAGAGCCT 60.684 63.158 0.00 0.00 43.05 4.58
3513 6493 1.671901 CCCTTCCTCGTCAGAGCCTC 61.672 65.000 0.00 0.00 43.05 4.70
3516 6496 1.946768 CTTCCTCGTCAGAGCCTCTAG 59.053 57.143 0.00 0.00 43.05 2.43
3519 6499 0.749818 CTCGTCAGAGCCTCTAGCCA 60.750 60.000 0.00 0.00 45.47 4.75
3529 6509 1.591703 CTCTAGCCAGAACGGTGCA 59.408 57.895 0.00 0.00 36.97 4.57
3530 6510 0.176680 CTCTAGCCAGAACGGTGCAT 59.823 55.000 0.00 0.00 36.97 3.96
3537 6517 0.884259 CAGAACGGTGCATGTGGACA 60.884 55.000 6.97 0.00 38.19 4.02
3567 6547 1.216930 TGATGGATCCGTCCTAGGACA 59.783 52.381 35.32 21.30 45.32 4.02
3654 6634 3.697542 GCCTAAACCAAATTGGGTCGTAT 59.302 43.478 17.27 0.00 35.52 3.06
3671 6651 3.071023 TCGTATGCCTTTCTTGGATAGGG 59.929 47.826 6.26 0.00 32.63 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.163622 CCTCCGTGAAATGCTGTCAATAATT 60.164 40.000 0.00 0.00 0.00 1.40
37 38 5.750352 AGCATGGAAACTGGAATTTGAAT 57.250 34.783 0.00 0.00 0.00 2.57
104 124 3.664107 TGAATACTCACTTGTCACCAGC 58.336 45.455 0.00 0.00 0.00 4.85
111 131 9.947669 GTATTATACGTCTGAATACTCACTTGT 57.052 33.333 14.98 0.00 34.57 3.16
134 156 5.300752 CCAGAAAATGCTACGGATGAGTAT 58.699 41.667 0.00 0.00 0.00 2.12
135 157 4.442893 CCCAGAAAATGCTACGGATGAGTA 60.443 45.833 0.00 0.00 0.00 2.59
137 159 2.874701 CCCAGAAAATGCTACGGATGAG 59.125 50.000 0.00 0.00 0.00 2.90
151 178 2.094182 GCACATCGACTACTCCCAGAAA 60.094 50.000 0.00 0.00 0.00 2.52
155 182 0.324368 AGGCACATCGACTACTCCCA 60.324 55.000 0.00 0.00 0.00 4.37
157 184 2.426024 TGTTAGGCACATCGACTACTCC 59.574 50.000 0.00 0.00 0.00 3.85
158 185 3.128938 ACTGTTAGGCACATCGACTACTC 59.871 47.826 0.00 0.00 33.76 2.59
159 186 3.090037 ACTGTTAGGCACATCGACTACT 58.910 45.455 0.00 0.00 33.76 2.57
303 339 0.538057 ACAACAGACAGTGGCATGGG 60.538 55.000 0.00 0.00 0.00 4.00
318 366 2.680841 TCAGCAACACCAACACTACAAC 59.319 45.455 0.00 0.00 0.00 3.32
324 372 3.315191 ACAGTTATCAGCAACACCAACAC 59.685 43.478 0.00 0.00 0.00 3.32
325 373 3.550820 ACAGTTATCAGCAACACCAACA 58.449 40.909 0.00 0.00 0.00 3.33
326 374 4.202010 ACAACAGTTATCAGCAACACCAAC 60.202 41.667 0.00 0.00 0.00 3.77
327 375 3.951037 ACAACAGTTATCAGCAACACCAA 59.049 39.130 0.00 0.00 0.00 3.67
328 376 3.314913 CACAACAGTTATCAGCAACACCA 59.685 43.478 0.00 0.00 0.00 4.17
329 377 3.315191 ACACAACAGTTATCAGCAACACC 59.685 43.478 0.00 0.00 0.00 4.16
371 419 6.525629 GGCTCTTCTATTAACCATGCTCTAA 58.474 40.000 0.00 0.00 0.00 2.10
372 420 5.279006 CGGCTCTTCTATTAACCATGCTCTA 60.279 44.000 0.00 0.00 0.00 2.43
376 892 2.808543 CCGGCTCTTCTATTAACCATGC 59.191 50.000 0.00 0.00 0.00 4.06
378 894 2.438021 TGCCGGCTCTTCTATTAACCAT 59.562 45.455 29.70 0.00 0.00 3.55
381 897 1.867865 GCTGCCGGCTCTTCTATTAAC 59.132 52.381 29.70 0.00 38.06 2.01
394 910 3.774528 TACAGAGCCAGCTGCCGG 61.775 66.667 8.66 0.00 42.71 6.13
395 911 2.510238 GTACAGAGCCAGCTGCCG 60.510 66.667 8.66 0.00 42.71 5.69
396 912 1.153469 GAGTACAGAGCCAGCTGCC 60.153 63.158 8.66 0.00 42.71 4.85
397 913 0.177604 ATGAGTACAGAGCCAGCTGC 59.822 55.000 8.66 3.91 39.51 5.25
398 914 1.937278 CATGAGTACAGAGCCAGCTG 58.063 55.000 6.78 6.78 41.63 4.24
399 915 0.177604 GCATGAGTACAGAGCCAGCT 59.822 55.000 0.00 0.00 0.00 4.24
401 917 3.376218 GGCATGAGTACAGAGCCAG 57.624 57.895 12.06 0.00 44.80 4.85
403 919 1.134280 ACATGGCATGAGTACAGAGCC 60.134 52.381 32.74 10.55 45.29 4.70
404 920 2.208431 GACATGGCATGAGTACAGAGC 58.792 52.381 32.74 7.25 0.00 4.09
405 921 3.531934 TGACATGGCATGAGTACAGAG 57.468 47.619 32.74 4.25 0.00 3.35
406 922 5.813513 ATATGACATGGCATGAGTACAGA 57.186 39.130 32.74 21.35 0.00 3.41
407 923 7.437565 GCTATATATGACATGGCATGAGTACAG 59.562 40.741 32.74 13.07 30.84 2.74
409 925 6.703607 GGCTATATATGACATGGCATGAGTAC 59.296 42.308 32.74 19.35 31.98 2.73
410 926 6.612863 AGGCTATATATGACATGGCATGAGTA 59.387 38.462 32.74 20.37 31.98 2.59
411 927 5.427806 AGGCTATATATGACATGGCATGAGT 59.572 40.000 32.74 19.02 31.98 3.41
412 928 5.926663 AGGCTATATATGACATGGCATGAG 58.073 41.667 32.74 17.62 31.98 2.90
413 929 5.963214 AGGCTATATATGACATGGCATGA 57.037 39.130 32.74 12.27 31.98 3.07
414 930 6.376299 ACAAAGGCTATATATGACATGGCATG 59.624 38.462 24.86 25.31 31.98 4.06
415 931 6.376299 CACAAAGGCTATATATGACATGGCAT 59.624 38.462 20.10 20.10 31.98 4.40
416 932 5.706833 CACAAAGGCTATATATGACATGGCA 59.293 40.000 2.18 2.18 31.98 4.92
417 933 5.939883 TCACAAAGGCTATATATGACATGGC 59.060 40.000 0.00 0.00 0.00 4.40
418 934 7.984422 TTCACAAAGGCTATATATGACATGG 57.016 36.000 0.00 0.00 0.00 3.66
443 959 6.389906 GCCAGCCTTATTATATGCGATTTTT 58.610 36.000 0.00 0.00 0.00 1.94
444 960 5.391950 CGCCAGCCTTATTATATGCGATTTT 60.392 40.000 0.00 0.00 43.07 1.82
445 961 4.094887 CGCCAGCCTTATTATATGCGATTT 59.905 41.667 0.00 0.00 43.07 2.17
448 964 2.028476 ACGCCAGCCTTATTATATGCGA 60.028 45.455 7.60 0.00 43.07 5.10
449 965 2.094258 CACGCCAGCCTTATTATATGCG 59.906 50.000 0.00 0.00 45.59 4.73
450 966 3.074412 ACACGCCAGCCTTATTATATGC 58.926 45.455 0.00 0.00 0.00 3.14
451 967 5.932303 ACTTACACGCCAGCCTTATTATATG 59.068 40.000 0.00 0.00 0.00 1.78
452 968 6.110411 ACTTACACGCCAGCCTTATTATAT 57.890 37.500 0.00 0.00 0.00 0.86
453 969 5.540400 ACTTACACGCCAGCCTTATTATA 57.460 39.130 0.00 0.00 0.00 0.98
455 971 3.899052 ACTTACACGCCAGCCTTATTA 57.101 42.857 0.00 0.00 0.00 0.98
456 972 2.747446 CAACTTACACGCCAGCCTTATT 59.253 45.455 0.00 0.00 0.00 1.40
457 973 2.356135 CAACTTACACGCCAGCCTTAT 58.644 47.619 0.00 0.00 0.00 1.73
458 974 1.609580 CCAACTTACACGCCAGCCTTA 60.610 52.381 0.00 0.00 0.00 2.69
459 975 0.889186 CCAACTTACACGCCAGCCTT 60.889 55.000 0.00 0.00 0.00 4.35
460 976 1.302511 CCAACTTACACGCCAGCCT 60.303 57.895 0.00 0.00 0.00 4.58
461 977 2.978018 GCCAACTTACACGCCAGCC 61.978 63.158 0.00 0.00 0.00 4.85
462 978 1.966451 AGCCAACTTACACGCCAGC 60.966 57.895 0.00 0.00 0.00 4.85
463 979 0.884704 ACAGCCAACTTACACGCCAG 60.885 55.000 0.00 0.00 0.00 4.85
465 981 1.076332 CTACAGCCAACTTACACGCC 58.924 55.000 0.00 0.00 0.00 5.68
466 982 0.442699 GCTACAGCCAACTTACACGC 59.557 55.000 0.00 0.00 34.31 5.34
467 983 1.790755 TGCTACAGCCAACTTACACG 58.209 50.000 0.00 0.00 41.18 4.49
468 984 4.766404 AATTGCTACAGCCAACTTACAC 57.234 40.909 0.00 0.00 41.18 2.90
469 985 6.432783 ACATTAATTGCTACAGCCAACTTACA 59.567 34.615 0.00 0.00 41.18 2.41
470 986 6.852664 ACATTAATTGCTACAGCCAACTTAC 58.147 36.000 0.00 0.00 41.18 2.34
471 987 7.461182 AACATTAATTGCTACAGCCAACTTA 57.539 32.000 0.00 0.00 41.18 2.24
474 990 6.393720 CAAACATTAATTGCTACAGCCAAC 57.606 37.500 0.00 0.00 41.18 3.77
485 1001 4.636648 ACCCATGCATGCAAACATTAATTG 59.363 37.500 26.68 14.54 32.87 2.32
486 1002 4.846040 ACCCATGCATGCAAACATTAATT 58.154 34.783 26.68 0.80 32.87 1.40
487 1003 4.490899 ACCCATGCATGCAAACATTAAT 57.509 36.364 26.68 1.67 32.87 1.40
488 1004 3.977134 ACCCATGCATGCAAACATTAA 57.023 38.095 26.68 0.00 32.87 1.40
490 1006 3.514706 TCTTACCCATGCATGCAAACATT 59.485 39.130 26.68 4.34 32.87 2.71
491 1007 3.098377 TCTTACCCATGCATGCAAACAT 58.902 40.909 26.68 13.42 36.79 2.71
492 1008 2.523245 TCTTACCCATGCATGCAAACA 58.477 42.857 26.68 0.00 0.00 2.83
493 1009 3.591196 TTCTTACCCATGCATGCAAAC 57.409 42.857 26.68 0.00 0.00 2.93
495 1011 2.159071 GCATTCTTACCCATGCATGCAA 60.159 45.455 26.68 12.79 44.49 4.08
496 1012 1.409790 GCATTCTTACCCATGCATGCA 59.590 47.619 25.04 25.04 44.49 3.96
501 1017 2.529151 CGTTTGCATTCTTACCCATGC 58.471 47.619 0.00 0.00 45.20 4.06
502 1018 2.529151 GCGTTTGCATTCTTACCCATG 58.471 47.619 0.00 0.00 42.15 3.66
503 1019 2.939460 GCGTTTGCATTCTTACCCAT 57.061 45.000 0.00 0.00 42.15 4.00
519 1035 2.094675 CCCTCTTCCAATCAAATGCGT 58.905 47.619 0.00 0.00 0.00 5.24
520 1036 2.368439 TCCCTCTTCCAATCAAATGCG 58.632 47.619 0.00 0.00 0.00 4.73
521 1037 4.463891 TCTTTCCCTCTTCCAATCAAATGC 59.536 41.667 0.00 0.00 0.00 3.56
522 1038 6.594788 TTCTTTCCCTCTTCCAATCAAATG 57.405 37.500 0.00 0.00 0.00 2.32
523 1039 5.186603 GCTTCTTTCCCTCTTCCAATCAAAT 59.813 40.000 0.00 0.00 0.00 2.32
524 1040 4.524328 GCTTCTTTCCCTCTTCCAATCAAA 59.476 41.667 0.00 0.00 0.00 2.69
525 1041 4.082125 GCTTCTTTCCCTCTTCCAATCAA 58.918 43.478 0.00 0.00 0.00 2.57
526 1042 3.690460 GCTTCTTTCCCTCTTCCAATCA 58.310 45.455 0.00 0.00 0.00 2.57
527 1043 2.680339 CGCTTCTTTCCCTCTTCCAATC 59.320 50.000 0.00 0.00 0.00 2.67
539 1055 1.462670 CTGAAGGCTGACGCTTCTTTC 59.537 52.381 0.00 0.00 36.09 2.62
540 1056 1.517242 CTGAAGGCTGACGCTTCTTT 58.483 50.000 0.00 0.00 36.09 2.52
541 1057 0.952984 GCTGAAGGCTGACGCTTCTT 60.953 55.000 0.00 0.00 38.06 2.52
542 1058 1.375268 GCTGAAGGCTGACGCTTCT 60.375 57.895 0.00 0.00 38.06 2.85
543 1059 2.394563 GGCTGAAGGCTGACGCTTC 61.395 63.158 0.00 0.00 41.46 3.86
545 1061 4.400961 GGGCTGAAGGCTGACGCT 62.401 66.667 3.70 0.00 41.46 5.07
547 1063 3.710722 AGGGGCTGAAGGCTGACG 61.711 66.667 3.70 0.00 41.46 4.35
548 1064 2.045536 CAGGGGCTGAAGGCTGAC 60.046 66.667 3.70 0.00 41.46 3.51
549 1065 4.039092 GCAGGGGCTGAAGGCTGA 62.039 66.667 3.70 0.00 41.46 4.26
550 1066 3.657038 ATGCAGGGGCTGAAGGCTG 62.657 63.158 3.70 0.00 41.91 4.85
552 1068 3.145551 CATGCAGGGGCTGAAGGC 61.146 66.667 0.00 0.00 41.91 4.35
553 1069 3.145551 GCATGCAGGGGCTGAAGG 61.146 66.667 14.21 0.00 41.91 3.46
554 1070 1.327690 AATGCATGCAGGGGCTGAAG 61.328 55.000 26.69 0.00 41.91 3.02
556 1072 1.755395 GAATGCATGCAGGGGCTGA 60.755 57.895 26.69 0.00 41.91 4.26
557 1073 1.327690 AAGAATGCATGCAGGGGCTG 61.328 55.000 26.69 0.00 41.91 4.85
558 1074 0.616679 AAAGAATGCATGCAGGGGCT 60.617 50.000 26.69 16.21 41.91 5.19
559 1075 0.251073 AAAAGAATGCATGCAGGGGC 59.749 50.000 26.69 14.24 41.68 5.80
560 1076 1.829222 AGAAAAGAATGCATGCAGGGG 59.171 47.619 26.69 0.00 0.00 4.79
561 1077 2.758979 AGAGAAAAGAATGCATGCAGGG 59.241 45.455 26.69 0.00 0.00 4.45
562 1078 3.487042 CGAGAGAAAAGAATGCATGCAGG 60.487 47.826 26.69 0.00 0.00 4.85
563 1079 3.373130 TCGAGAGAAAAGAATGCATGCAG 59.627 43.478 26.69 7.45 37.03 4.41
564 1080 3.337358 TCGAGAGAAAAGAATGCATGCA 58.663 40.909 25.04 25.04 37.03 3.96
565 1081 3.373439 ACTCGAGAGAAAAGAATGCATGC 59.627 43.478 21.68 11.82 41.32 4.06
566 1082 4.727162 GCACTCGAGAGAAAAGAATGCATG 60.727 45.833 21.68 2.30 41.32 4.06
567 1083 3.373439 GCACTCGAGAGAAAAGAATGCAT 59.627 43.478 21.68 0.00 41.32 3.96
568 1084 2.738846 GCACTCGAGAGAAAAGAATGCA 59.261 45.455 21.68 0.00 41.32 3.96
569 1085 2.738846 TGCACTCGAGAGAAAAGAATGC 59.261 45.455 21.68 15.21 41.32 3.56
570 1086 3.993081 ACTGCACTCGAGAGAAAAGAATG 59.007 43.478 21.68 4.37 41.32 2.67
571 1087 3.993081 CACTGCACTCGAGAGAAAAGAAT 59.007 43.478 21.68 0.00 41.32 2.40
572 1088 3.384668 CACTGCACTCGAGAGAAAAGAA 58.615 45.455 21.68 0.00 41.32 2.52
573 1089 2.864097 GCACTGCACTCGAGAGAAAAGA 60.864 50.000 21.68 0.00 41.32 2.52
574 1090 1.458827 GCACTGCACTCGAGAGAAAAG 59.541 52.381 21.68 12.11 41.32 2.27
575 1091 1.069204 AGCACTGCACTCGAGAGAAAA 59.931 47.619 21.68 0.00 41.32 2.29
576 1092 0.676184 AGCACTGCACTCGAGAGAAA 59.324 50.000 21.68 2.35 41.32 2.52
577 1093 1.200252 GTAGCACTGCACTCGAGAGAA 59.800 52.381 21.68 4.54 41.32 2.87
578 1094 0.805614 GTAGCACTGCACTCGAGAGA 59.194 55.000 21.68 0.77 39.12 3.10
579 1095 0.523519 TGTAGCACTGCACTCGAGAG 59.476 55.000 21.68 13.24 0.00 3.20
580 1096 0.523519 CTGTAGCACTGCACTCGAGA 59.476 55.000 21.68 0.00 0.00 4.04
581 1097 1.075425 GCTGTAGCACTGCACTCGAG 61.075 60.000 11.84 11.84 41.83 4.04
582 1098 1.080501 GCTGTAGCACTGCACTCGA 60.081 57.895 3.30 0.00 41.83 4.04
583 1099 2.097038 GGCTGTAGCACTGCACTCG 61.097 63.158 15.84 0.00 43.66 4.18
584 1100 2.097038 CGGCTGTAGCACTGCACTC 61.097 63.158 15.84 0.00 43.66 3.51
585 1101 2.047844 CGGCTGTAGCACTGCACT 60.048 61.111 15.84 0.00 43.66 4.40
586 1102 3.121030 CCGGCTGTAGCACTGCAC 61.121 66.667 15.84 0.53 43.66 4.57
587 1103 4.393155 CCCGGCTGTAGCACTGCA 62.393 66.667 15.84 0.00 43.66 4.41
591 1107 4.530857 ATCGCCCGGCTGTAGCAC 62.531 66.667 8.05 0.00 44.36 4.40
592 1108 3.781307 AATCGCCCGGCTGTAGCA 61.781 61.111 8.05 0.00 44.36 3.49
593 1109 3.272334 CAATCGCCCGGCTGTAGC 61.272 66.667 8.05 0.00 41.14 3.58
594 1110 3.272334 GCAATCGCCCGGCTGTAG 61.272 66.667 8.05 0.00 0.00 2.74
617 1133 3.391665 AATGAGGAAGAGGCCGGCG 62.392 63.158 22.54 0.00 0.00 6.46
618 1134 1.524849 GAATGAGGAAGAGGCCGGC 60.525 63.158 21.18 21.18 0.00 6.13
619 1135 1.147153 GGAATGAGGAAGAGGCCGG 59.853 63.158 0.00 0.00 0.00 6.13
620 1136 0.253044 TTGGAATGAGGAAGAGGCCG 59.747 55.000 0.00 0.00 0.00 6.13
621 1137 1.283321 AGTTGGAATGAGGAAGAGGCC 59.717 52.381 0.00 0.00 0.00 5.19
622 1138 2.797177 AGTTGGAATGAGGAAGAGGC 57.203 50.000 0.00 0.00 0.00 4.70
623 1139 4.916183 AGAAAGTTGGAATGAGGAAGAGG 58.084 43.478 0.00 0.00 0.00 3.69
624 1140 5.803552 AGAGAAAGTTGGAATGAGGAAGAG 58.196 41.667 0.00 0.00 0.00 2.85
625 1141 5.545723 AGAGAGAAAGTTGGAATGAGGAAGA 59.454 40.000 0.00 0.00 0.00 2.87
626 1142 5.803552 AGAGAGAAAGTTGGAATGAGGAAG 58.196 41.667 0.00 0.00 0.00 3.46
627 1143 5.280215 GGAGAGAGAAAGTTGGAATGAGGAA 60.280 44.000 0.00 0.00 0.00 3.36
628 1144 4.223923 GGAGAGAGAAAGTTGGAATGAGGA 59.776 45.833 0.00 0.00 0.00 3.71
629 1145 4.224818 AGGAGAGAGAAAGTTGGAATGAGG 59.775 45.833 0.00 0.00 0.00 3.86
630 1146 5.418676 GAGGAGAGAGAAAGTTGGAATGAG 58.581 45.833 0.00 0.00 0.00 2.90
631 1147 4.223923 GGAGGAGAGAGAAAGTTGGAATGA 59.776 45.833 0.00 0.00 0.00 2.57
632 1148 4.019860 TGGAGGAGAGAGAAAGTTGGAATG 60.020 45.833 0.00 0.00 0.00 2.67
633 1149 4.171234 TGGAGGAGAGAGAAAGTTGGAAT 58.829 43.478 0.00 0.00 0.00 3.01
634 1150 3.580458 CTGGAGGAGAGAGAAAGTTGGAA 59.420 47.826 0.00 0.00 0.00 3.53
635 1151 3.169099 CTGGAGGAGAGAGAAAGTTGGA 58.831 50.000 0.00 0.00 0.00 3.53
636 1152 2.354604 GCTGGAGGAGAGAGAAAGTTGG 60.355 54.545 0.00 0.00 0.00 3.77
637 1153 2.566724 AGCTGGAGGAGAGAGAAAGTTG 59.433 50.000 0.00 0.00 0.00 3.16
638 1154 2.901291 AGCTGGAGGAGAGAGAAAGTT 58.099 47.619 0.00 0.00 0.00 2.66
639 1155 2.621556 AGCTGGAGGAGAGAGAAAGT 57.378 50.000 0.00 0.00 0.00 2.66
640 1156 3.631250 ACTAGCTGGAGGAGAGAGAAAG 58.369 50.000 3.17 0.00 0.00 2.62
641 1157 3.748645 ACTAGCTGGAGGAGAGAGAAA 57.251 47.619 3.17 0.00 0.00 2.52
642 1158 5.396057 AATACTAGCTGGAGGAGAGAGAA 57.604 43.478 3.17 0.00 0.00 2.87
643 1159 5.396057 AAATACTAGCTGGAGGAGAGAGA 57.604 43.478 3.17 0.00 0.00 3.10
644 1160 6.279882 CAAAAATACTAGCTGGAGGAGAGAG 58.720 44.000 3.17 0.00 0.00 3.20
645 1161 5.395768 GCAAAAATACTAGCTGGAGGAGAGA 60.396 44.000 3.17 0.00 0.00 3.10
646 1162 4.813697 GCAAAAATACTAGCTGGAGGAGAG 59.186 45.833 3.17 0.00 0.00 3.20
647 1163 4.471386 AGCAAAAATACTAGCTGGAGGAGA 59.529 41.667 3.17 0.00 35.72 3.71
648 1164 4.775236 AGCAAAAATACTAGCTGGAGGAG 58.225 43.478 3.17 0.00 35.72 3.69
649 1165 4.844349 AGCAAAAATACTAGCTGGAGGA 57.156 40.909 3.17 0.00 35.72 3.71
650 1166 6.995091 AGATTAGCAAAAATACTAGCTGGAGG 59.005 38.462 3.17 0.00 37.94 4.30
651 1167 7.041508 CCAGATTAGCAAAAATACTAGCTGGAG 60.042 40.741 3.17 0.00 41.02 3.86
652 1168 6.767902 CCAGATTAGCAAAAATACTAGCTGGA 59.232 38.462 3.17 0.00 41.02 3.86
653 1169 6.767902 TCCAGATTAGCAAAAATACTAGCTGG 59.232 38.462 0.00 0.00 40.50 4.85
654 1170 7.280876 TGTCCAGATTAGCAAAAATACTAGCTG 59.719 37.037 0.00 0.00 37.94 4.24
655 1171 7.338710 TGTCCAGATTAGCAAAAATACTAGCT 58.661 34.615 0.00 0.00 40.92 3.32
656 1172 7.553881 TGTCCAGATTAGCAAAAATACTAGC 57.446 36.000 0.00 0.00 0.00 3.42
657 1173 7.497249 AGCTGTCCAGATTAGCAAAAATACTAG 59.503 37.037 0.00 0.00 39.84 2.57
658 1174 7.338710 AGCTGTCCAGATTAGCAAAAATACTA 58.661 34.615 0.00 0.00 39.84 1.82
659 1175 6.183347 AGCTGTCCAGATTAGCAAAAATACT 58.817 36.000 0.00 0.00 39.84 2.12
660 1176 6.442513 AGCTGTCCAGATTAGCAAAAATAC 57.557 37.500 0.00 0.00 39.84 1.89
661 1177 8.752005 ATAAGCTGTCCAGATTAGCAAAAATA 57.248 30.769 10.37 0.00 41.79 1.40
662 1178 5.990120 AAGCTGTCCAGATTAGCAAAAAT 57.010 34.783 0.00 0.00 39.84 1.82
663 1179 7.201732 GCTATAAGCTGTCCAGATTAGCAAAAA 60.202 37.037 12.70 0.00 41.79 1.94
664 1180 6.260936 GCTATAAGCTGTCCAGATTAGCAAAA 59.739 38.462 12.70 0.00 41.79 2.44
665 1181 5.760253 GCTATAAGCTGTCCAGATTAGCAAA 59.240 40.000 12.70 0.00 41.79 3.68
666 1182 5.300752 GCTATAAGCTGTCCAGATTAGCAA 58.699 41.667 12.70 1.77 41.79 3.91
667 1183 4.262635 GGCTATAAGCTGTCCAGATTAGCA 60.263 45.833 17.12 6.04 41.79 3.49
668 1184 4.020662 AGGCTATAAGCTGTCCAGATTAGC 60.021 45.833 10.37 10.29 41.79 3.09
669 1185 5.477510 CAGGCTATAAGCTGTCCAGATTAG 58.522 45.833 10.37 1.84 41.79 1.73
670 1186 4.262635 GCAGGCTATAAGCTGTCCAGATTA 60.263 45.833 7.39 7.39 42.55 1.75
671 1187 3.495806 GCAGGCTATAAGCTGTCCAGATT 60.496 47.826 3.08 3.08 41.99 2.40
672 1188 2.038295 GCAGGCTATAAGCTGTCCAGAT 59.962 50.000 0.00 0.00 41.99 2.90
673 1189 1.414181 GCAGGCTATAAGCTGTCCAGA 59.586 52.381 0.00 0.00 41.99 3.86
674 1190 1.415659 AGCAGGCTATAAGCTGTCCAG 59.584 52.381 0.00 0.00 41.99 3.86
675 1191 1.500474 AGCAGGCTATAAGCTGTCCA 58.500 50.000 0.00 0.00 41.99 4.02
680 1196 2.364970 CTGAGTCAGCAGGCTATAAGCT 59.635 50.000 7.33 0.00 41.99 3.74
681 1197 2.753296 CTGAGTCAGCAGGCTATAAGC 58.247 52.381 7.33 0.00 41.46 3.09
690 1206 4.582656 AGTATAGTAAGCCTGAGTCAGCAG 59.417 45.833 15.10 3.30 35.66 4.24
691 1207 4.537751 AGTATAGTAAGCCTGAGTCAGCA 58.462 43.478 15.10 0.00 0.00 4.41
692 1208 5.285651 CAAGTATAGTAAGCCTGAGTCAGC 58.714 45.833 15.10 10.21 0.00 4.26
693 1209 5.068460 AGCAAGTATAGTAAGCCTGAGTCAG 59.932 44.000 13.56 13.56 0.00 3.51
694 1210 4.956700 AGCAAGTATAGTAAGCCTGAGTCA 59.043 41.667 0.00 0.00 0.00 3.41
695 1211 5.300792 AGAGCAAGTATAGTAAGCCTGAGTC 59.699 44.000 2.28 0.00 0.00 3.36
696 1212 5.205056 AGAGCAAGTATAGTAAGCCTGAGT 58.795 41.667 2.28 0.00 0.00 3.41
697 1213 5.782893 AGAGCAAGTATAGTAAGCCTGAG 57.217 43.478 2.28 0.00 0.00 3.35
698 1214 7.841282 ATAAGAGCAAGTATAGTAAGCCTGA 57.159 36.000 2.28 0.00 0.00 3.86
711 1227 8.145122 GGCTTAGTCTGTATAATAAGAGCAAGT 58.855 37.037 0.00 0.00 0.00 3.16
712 1228 8.144478 TGGCTTAGTCTGTATAATAAGAGCAAG 58.856 37.037 0.00 0.00 0.00 4.01
713 1229 7.926555 GTGGCTTAGTCTGTATAATAAGAGCAA 59.073 37.037 0.00 0.00 0.00 3.91
714 1230 7.434492 GTGGCTTAGTCTGTATAATAAGAGCA 58.566 38.462 0.00 0.00 0.00 4.26
715 1231 6.583050 CGTGGCTTAGTCTGTATAATAAGAGC 59.417 42.308 0.00 0.00 0.00 4.09
716 1232 7.591795 CACGTGGCTTAGTCTGTATAATAAGAG 59.408 40.741 7.95 0.00 0.00 2.85
717 1233 7.283807 TCACGTGGCTTAGTCTGTATAATAAGA 59.716 37.037 17.00 0.00 0.00 2.10
731 1247 5.788531 CGAATTAAAGTTTCACGTGGCTTAG 59.211 40.000 17.00 0.00 0.00 2.18
732 1248 5.236911 ACGAATTAAAGTTTCACGTGGCTTA 59.763 36.000 17.00 4.81 0.00 3.09
754 1270 0.043053 CACGTTCAAGCAGTGACACG 60.043 55.000 16.13 16.13 41.95 4.49
778 1294 3.680156 GGGCACCGCAGAAAATCA 58.320 55.556 0.00 0.00 40.86 2.57
1080 1604 5.375417 TCATGAGGTACTTGTTGCAAATG 57.625 39.130 0.00 0.00 41.55 2.32
1113 1637 7.864379 TGAAAGTTGTACTAACCGAAGTAGAAG 59.136 37.037 0.00 0.00 36.30 2.85
1141 1668 2.547642 GCAGCACTGAGAGTCTGAAACT 60.548 50.000 0.00 0.00 42.42 2.66
1155 1682 0.954449 CAGTAAGCAGCAGCAGCACT 60.954 55.000 12.92 4.76 45.49 4.40
1223 1754 5.723295 AGCAAACACAAATCAGAAAGTTGT 58.277 33.333 0.00 0.00 35.91 3.32
1224 1755 6.310956 TGAAGCAAACACAAATCAGAAAGTTG 59.689 34.615 0.00 0.00 0.00 3.16
1236 1767 7.359097 GCATATCGAAATTTGAAGCAAACACAA 60.359 33.333 0.00 0.00 36.13 3.33
1242 1773 4.799949 GCTGCATATCGAAATTTGAAGCAA 59.200 37.500 12.69 0.00 42.23 3.91
1248 1779 2.960266 CGTCGCTGCATATCGAAATTTG 59.040 45.455 0.00 0.00 36.41 2.32
1255 1786 0.592500 AGTGTCGTCGCTGCATATCG 60.593 55.000 0.00 0.00 32.76 2.92
1288 1820 0.590195 GTGCAGAAAGTCACCAGCAG 59.410 55.000 0.00 0.00 32.03 4.24
1299 1831 1.725641 CTATGTGGAGCGTGCAGAAA 58.274 50.000 0.00 0.00 0.00 2.52
1338 1870 1.447838 GTCGATTGGCTTCGGCTCA 60.448 57.895 7.58 0.00 40.47 4.26
1392 1924 1.135094 TGAGGAGGCCAATGGAGATC 58.865 55.000 5.01 0.00 0.00 2.75
1440 1972 1.280998 GGGTAGCTTGCCTGGTAGAAA 59.719 52.381 0.00 0.00 0.00 2.52
1456 1992 2.630098 GCTATCATCAGCAGTCTGGGTA 59.370 50.000 1.14 0.00 41.40 3.69
1462 1998 5.131594 TGTATGAGCTATCATCAGCAGTC 57.868 43.478 0.00 0.00 42.76 3.51
1485 2021 9.113876 CGAGTAAGAAAACAAATGAAATGGTAC 57.886 33.333 0.00 0.00 0.00 3.34
1486 2022 8.842280 ACGAGTAAGAAAACAAATGAAATGGTA 58.158 29.630 0.00 0.00 0.00 3.25
1487 2023 7.647715 CACGAGTAAGAAAACAAATGAAATGGT 59.352 33.333 0.00 0.00 0.00 3.55
1488 2024 7.114811 CCACGAGTAAGAAAACAAATGAAATGG 59.885 37.037 0.00 0.00 0.00 3.16
1522 2058 4.976116 GGTCATCTGTAGCAAAACAAACAC 59.024 41.667 0.00 0.00 0.00 3.32
1530 2066 3.076621 CAGCTTGGTCATCTGTAGCAAA 58.923 45.455 0.00 0.00 34.24 3.68
1563 2099 2.356535 GGTCTCCAAGAGCATGGTGAAT 60.357 50.000 0.00 0.00 42.73 2.57
1611 2147 4.686191 ATGCGAGAAGGAATCTGAGAAT 57.314 40.909 0.00 0.00 38.96 2.40
1634 2170 4.019174 TCAAGATGATCAGGAAAAAGCCC 58.981 43.478 0.09 0.00 0.00 5.19
1656 2206 3.988379 TGAGAAACGCTGAATTTGCTT 57.012 38.095 3.52 0.00 0.00 3.91
1662 2212 2.012673 GGAGCATGAGAAACGCTGAAT 58.987 47.619 0.00 0.00 35.75 2.57
1669 2219 4.978083 ATGAATGTGGAGCATGAGAAAC 57.022 40.909 0.00 0.00 37.96 2.78
1686 2236 3.076621 CTCTGGCTGCACAGTTAATGAA 58.923 45.455 14.79 0.00 39.48 2.57
1695 2245 0.958876 CTTGATGCTCTGGCTGCACA 60.959 55.000 0.50 0.00 43.59 4.57
1756 2306 0.611896 TGAGCTGGAGATCGGTGACA 60.612 55.000 0.00 0.00 32.18 3.58
1789 2339 0.460811 TGGTGAGCACTGCGATGATC 60.461 55.000 0.16 0.00 35.52 2.92
1856 2406 5.746539 GCTTAGATAGCTTGAGTTTCATGC 58.253 41.667 0.00 8.41 46.77 4.06
1889 2439 3.490761 GCAACTGCAAATGTGTAACAGGT 60.491 43.478 0.00 0.00 46.72 4.00
1922 2472 5.471116 TCAAGGAAGATGACATGAACACAAG 59.529 40.000 0.00 0.00 0.00 3.16
1970 2520 0.758123 CCTTGAGCCTCCTCTGGATC 59.242 60.000 0.00 0.00 42.39 3.36
2127 2677 0.237761 GCTGCTGCTGCACATATAGC 59.762 55.000 23.99 11.50 45.31 2.97
2196 2752 1.039856 ACACCTGCGCCAGAAAATTT 58.960 45.000 4.18 0.00 32.44 1.82
2199 2755 0.749818 TGAACACCTGCGCCAGAAAA 60.750 50.000 4.18 0.00 32.44 2.29
2241 2798 0.176910 TGCTGAAGTTGACGGACACA 59.823 50.000 0.00 0.00 0.00 3.72
2475 3032 1.474332 TACGGACCTGGGTGTTGACC 61.474 60.000 0.00 0.00 42.27 4.02
2511 3068 3.134623 ACGCCATTCCAGATTCAGATACA 59.865 43.478 0.00 0.00 0.00 2.29
2825 3382 7.569599 TCCAGAACTTTTTAGGTCCTAGAAT 57.430 36.000 2.82 0.00 0.00 2.40
2861 3418 1.807142 GGAGAAGTTGGTACTTGCTGC 59.193 52.381 0.00 0.00 44.51 5.25
2870 3427 4.141251 ACAACCATTGTAGGAGAAGTTGGT 60.141 41.667 0.00 0.00 43.27 3.67
2910 3467 6.482973 TCCAGAAAATTTCTTGTGCAATTTCC 59.517 34.615 5.36 0.00 38.11 3.13
2921 3478 6.469782 TGCAGAACTTCCAGAAAATTTCTT 57.530 33.333 5.36 0.00 38.11 2.52
2996 3553 8.130210 TTTCTCTGGAAAAAGGATTGACATCCA 61.130 37.037 4.09 0.00 43.22 3.41
2998 3555 6.824305 TTCTCTGGAAAAAGGATTGACATC 57.176 37.500 0.00 0.00 0.00 3.06
3031 3588 0.454957 TGCGTTTCGGCGTAGTCTAC 60.455 55.000 6.85 0.00 35.06 2.59
3142 6111 1.409064 TGGCTGTAGATGCTCTTACCG 59.591 52.381 0.00 0.00 0.00 4.02
3159 6128 1.065709 TGAAGGGTCGGATTTACTGGC 60.066 52.381 0.00 0.00 0.00 4.85
3160 6129 3.343941 TTGAAGGGTCGGATTTACTGG 57.656 47.619 0.00 0.00 0.00 4.00
3161 6130 3.124636 CGTTTGAAGGGTCGGATTTACTG 59.875 47.826 0.00 0.00 0.00 2.74
3162 6131 3.244318 ACGTTTGAAGGGTCGGATTTACT 60.244 43.478 0.00 0.00 0.00 2.24
3163 6132 3.069289 ACGTTTGAAGGGTCGGATTTAC 58.931 45.455 0.00 0.00 0.00 2.01
3164 6133 3.405823 ACGTTTGAAGGGTCGGATTTA 57.594 42.857 0.00 0.00 0.00 1.40
3165 6134 2.265589 ACGTTTGAAGGGTCGGATTT 57.734 45.000 0.00 0.00 0.00 2.17
3166 6135 2.148768 GAACGTTTGAAGGGTCGGATT 58.851 47.619 0.46 0.00 0.00 3.01
3167 6136 1.071071 TGAACGTTTGAAGGGTCGGAT 59.929 47.619 0.46 0.00 33.41 4.18
3168 6137 0.464870 TGAACGTTTGAAGGGTCGGA 59.535 50.000 0.46 0.00 33.41 4.55
3169 6138 0.584876 GTGAACGTTTGAAGGGTCGG 59.415 55.000 0.46 0.00 33.41 4.79
3170 6139 0.231279 CGTGAACGTTTGAAGGGTCG 59.769 55.000 0.46 0.00 33.41 4.79
3171 6140 0.584876 CCGTGAACGTTTGAAGGGTC 59.415 55.000 0.46 0.00 37.74 4.46
3172 6141 0.178533 TCCGTGAACGTTTGAAGGGT 59.821 50.000 0.46 0.00 37.74 4.34
3173 6142 0.584876 GTCCGTGAACGTTTGAAGGG 59.415 55.000 0.46 7.08 37.74 3.95
3174 6143 0.231279 CGTCCGTGAACGTTTGAAGG 59.769 55.000 0.46 4.58 37.86 3.46
3175 6144 3.702792 CGTCCGTGAACGTTTGAAG 57.297 52.632 0.46 0.00 37.86 3.02
3196 6165 3.203546 CTCCACGAACGTGTCCGGT 62.204 63.158 22.38 0.00 44.02 5.28
3197 6166 2.430244 CTCCACGAACGTGTCCGG 60.430 66.667 22.38 10.12 44.02 5.14
3198 6167 3.103911 GCTCCACGAACGTGTCCG 61.104 66.667 22.38 12.79 44.02 4.79
3199 6168 1.352156 GATGCTCCACGAACGTGTCC 61.352 60.000 22.38 12.35 44.02 4.02
3200 6169 0.388649 AGATGCTCCACGAACGTGTC 60.389 55.000 22.38 14.27 44.02 3.67
3201 6170 0.885879 TAGATGCTCCACGAACGTGT 59.114 50.000 22.38 6.82 44.02 4.49
3202 6171 2.209838 ATAGATGCTCCACGAACGTG 57.790 50.000 18.51 18.51 45.02 4.49
3203 6172 2.287668 GCTATAGATGCTCCACGAACGT 60.288 50.000 3.21 0.00 0.00 3.99
3204 6173 2.320367 GCTATAGATGCTCCACGAACG 58.680 52.381 3.21 0.00 0.00 3.95
3205 6174 2.035961 TGGCTATAGATGCTCCACGAAC 59.964 50.000 3.21 0.00 0.00 3.95
3206 6175 2.297315 CTGGCTATAGATGCTCCACGAA 59.703 50.000 3.21 0.00 0.00 3.85
3207 6176 1.889170 CTGGCTATAGATGCTCCACGA 59.111 52.381 3.21 0.00 0.00 4.35
3208 6177 1.671261 GCTGGCTATAGATGCTCCACG 60.671 57.143 3.21 0.00 0.00 4.94
3209 6178 1.345741 TGCTGGCTATAGATGCTCCAC 59.654 52.381 3.21 0.00 0.00 4.02
3210 6179 1.720781 TGCTGGCTATAGATGCTCCA 58.279 50.000 3.21 0.00 0.00 3.86
3211 6180 2.847327 TTGCTGGCTATAGATGCTCC 57.153 50.000 3.21 0.00 0.00 4.70
3212 6181 3.688673 GGATTTGCTGGCTATAGATGCTC 59.311 47.826 3.21 0.00 0.00 4.26
3213 6182 3.683802 GGATTTGCTGGCTATAGATGCT 58.316 45.455 3.21 0.00 0.00 3.79
3214 6183 2.417933 CGGATTTGCTGGCTATAGATGC 59.582 50.000 3.21 4.63 0.00 3.91
3215 6184 3.681897 GTCGGATTTGCTGGCTATAGATG 59.318 47.826 3.21 0.00 0.00 2.90
3216 6185 3.307059 GGTCGGATTTGCTGGCTATAGAT 60.307 47.826 3.21 0.00 0.00 1.98
3217 6186 2.037251 GGTCGGATTTGCTGGCTATAGA 59.963 50.000 3.21 0.00 0.00 1.98
3218 6187 2.417719 GGTCGGATTTGCTGGCTATAG 58.582 52.381 0.00 0.00 0.00 1.31
3219 6188 1.071699 GGGTCGGATTTGCTGGCTATA 59.928 52.381 0.00 0.00 0.00 1.31
3220 6189 0.179018 GGGTCGGATTTGCTGGCTAT 60.179 55.000 0.00 0.00 0.00 2.97
3221 6190 1.223487 GGGTCGGATTTGCTGGCTA 59.777 57.895 0.00 0.00 0.00 3.93
3222 6191 2.044946 GGGTCGGATTTGCTGGCT 60.045 61.111 0.00 0.00 0.00 4.75
3287 6256 9.337396 TGTAGAATCAAATATTTAAGGCGTGAT 57.663 29.630 0.00 0.00 0.00 3.06
3315 6284 5.462530 TGTTTCTACTTTGAGATGTCCGA 57.537 39.130 0.00 0.00 0.00 4.55
3391 6371 2.818169 AACACTCTGGGGAGCGCAA 61.818 57.895 11.47 0.00 42.98 4.85
3416 6396 0.754217 TACTCTACCTTGCCGGCGAT 60.754 55.000 23.90 8.70 35.61 4.58
3423 6403 1.202698 CCATGCCCTACTCTACCTTGC 60.203 57.143 0.00 0.00 0.00 4.01
3493 6473 2.185608 GCTCTGACGAGGAAGGGC 59.814 66.667 0.00 0.00 37.75 5.19
3495 6475 0.682855 AGAGGCTCTGACGAGGAAGG 60.683 60.000 17.96 0.00 37.75 3.46
3512 6492 0.108186 CATGCACCGTTCTGGCTAGA 60.108 55.000 0.00 0.00 43.94 2.43
3513 6493 0.391661 ACATGCACCGTTCTGGCTAG 60.392 55.000 0.00 0.00 43.94 3.42
3516 6496 2.562912 CACATGCACCGTTCTGGC 59.437 61.111 0.00 0.00 43.94 4.85
3519 6499 0.036732 ATGTCCACATGCACCGTTCT 59.963 50.000 0.00 0.00 34.83 3.01
3537 6517 1.547820 CGGATCCATCATCGACCTGAT 59.452 52.381 13.41 0.00 38.01 2.90
3567 6547 4.778143 GGTGGATGTCGCCGGCTT 62.778 66.667 26.68 6.29 36.17 4.35
3626 6606 2.370189 CCAATTTGGTTTAGGCCCAACA 59.630 45.455 15.58 0.00 41.55 3.33
3654 6634 1.846439 CCTCCCTATCCAAGAAAGGCA 59.154 52.381 0.00 0.00 0.00 4.75
3671 6651 1.815613 GAGCCTTCAAAAGCCTTCCTC 59.184 52.381 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.