Multiple sequence alignment - TraesCS1A01G156300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G156300 chr1A 100.000 6066 0 0 1 6066 276967000 276973065 0.000000e+00 11202.0
1 TraesCS1A01G156300 chr1A 97.674 43 1 0 5127 5169 91500306 91500348 2.340000e-09 75.0
2 TraesCS1A01G156300 chr1A 87.302 63 3 2 5108 5165 106223529 106223467 3.920000e-07 67.6
3 TraesCS1A01G156300 chr1A 95.122 41 2 0 2293 2333 376503774 376503734 1.410000e-06 65.8
4 TraesCS1A01G156300 chr1B 89.216 4145 232 58 5 4091 309376194 309380181 0.000000e+00 4979.0
5 TraesCS1A01G156300 chr1B 93.192 1704 83 15 4163 5855 309386692 309388373 0.000000e+00 2473.0
6 TraesCS1A01G156300 chr1B 95.506 89 4 0 4078 4166 309385837 309385925 6.340000e-30 143.0
7 TraesCS1A01G156300 chr1B 95.238 42 2 0 5128 5169 156597645 156597604 3.920000e-07 67.6
8 TraesCS1A01G156300 chr1D 92.991 3410 173 18 1269 4669 216328995 216332347 0.000000e+00 4913.0
9 TraesCS1A01G156300 chr1D 96.593 1086 30 4 4688 5771 216332338 216333418 0.000000e+00 1794.0
10 TraesCS1A01G156300 chr1D 92.586 607 33 5 674 1276 216328288 216328886 0.000000e+00 861.0
11 TraesCS1A01G156300 chr1D 85.757 674 58 17 5 672 216315757 216316398 0.000000e+00 678.0
12 TraesCS1A01G156300 chr1D 90.254 236 20 3 5834 6066 216353506 216353741 7.640000e-79 305.0
13 TraesCS1A01G156300 chr1D 85.075 67 9 1 2267 2333 301630980 301630915 3.920000e-07 67.6
14 TraesCS1A01G156300 chr5B 91.781 219 13 1 2562 2780 22361512 22361299 3.550000e-77 300.0
15 TraesCS1A01G156300 chr6D 80.247 162 27 5 2444 2602 449774097 449774256 3.840000e-22 117.0
16 TraesCS1A01G156300 chr6D 82.716 81 6 5 5783 5855 10721947 10721867 1.410000e-06 65.8
17 TraesCS1A01G156300 chr7B 87.500 64 3 3 5797 5855 107764842 107764905 1.090000e-07 69.4
18 TraesCS1A01G156300 chr7B 87.931 58 2 4 5803 5855 703244225 703244168 5.080000e-06 63.9
19 TraesCS1A01G156300 chr7A 95.349 43 2 0 258 300 110420935 110420977 1.090000e-07 69.4
20 TraesCS1A01G156300 chr7A 84.615 65 4 5 5803 5862 54726694 54726631 6.570000e-05 60.2
21 TraesCS1A01G156300 chr7D 82.353 85 8 6 5783 5862 139108831 139108749 3.920000e-07 67.6
22 TraesCS1A01G156300 chr4D 95.238 42 2 0 5128 5169 365838455 365838414 3.920000e-07 67.6
23 TraesCS1A01G156300 chr4A 95.238 42 2 0 5128 5169 99033035 99033076 3.920000e-07 67.6
24 TraesCS1A01G156300 chr4B 95.238 42 1 1 5128 5169 450451368 450451328 1.410000e-06 65.8
25 TraesCS1A01G156300 chr3D 93.333 45 2 1 5128 5172 565081556 565081599 1.410000e-06 65.8
26 TraesCS1A01G156300 chr3A 87.931 58 2 4 5803 5855 40926081 40926024 5.080000e-06 63.9
27 TraesCS1A01G156300 chr6B 85.714 63 4 5 5798 5855 704099267 704099329 1.830000e-05 62.1
28 TraesCS1A01G156300 chr5D 80.952 84 7 7 5781 5855 557886205 557886122 2.360000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G156300 chr1A 276967000 276973065 6065 False 11202.000000 11202 100.000000 1 6066 1 chr1A.!!$F2 6065
1 TraesCS1A01G156300 chr1B 309376194 309380181 3987 False 4979.000000 4979 89.216000 5 4091 1 chr1B.!!$F1 4086
2 TraesCS1A01G156300 chr1B 309385837 309388373 2536 False 1308.000000 2473 94.349000 4078 5855 2 chr1B.!!$F2 1777
3 TraesCS1A01G156300 chr1D 216328288 216333418 5130 False 2522.666667 4913 94.056667 674 5771 3 chr1D.!!$F3 5097
4 TraesCS1A01G156300 chr1D 216315757 216316398 641 False 678.000000 678 85.757000 5 672 1 chr1D.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 190 1.195448 CCAGCGTGTTTAGCAGAACAG 59.805 52.381 5.29 2.57 39.97 3.16 F
365 369 1.613437 CCAGATTTGTTGGTGGTGACC 59.387 52.381 0.00 0.00 43.48 4.02 F
1327 1480 0.034756 CAGTCAACCACGGATGACCA 59.965 55.000 19.48 0.00 45.23 4.02 F
2224 2391 0.178984 TCACTACTCGGTGGGTCACA 60.179 55.000 0.38 0.00 37.75 3.58 F
2758 2937 1.409241 GCCACATCACACCAGATCCAT 60.409 52.381 0.00 0.00 0.00 3.41 F
3332 3518 1.331756 GCACGGCAGATGTATTCTTGG 59.668 52.381 0.00 0.00 29.93 3.61 F
4615 5574 1.771255 ACCTGCCAAACTCTCTTCTGT 59.229 47.619 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1214 1251 0.456221 ATCTAGTGGTTCCAGCGTCG 59.544 55.000 0.00 0.0 0.00 5.12 R
2207 2374 0.111832 TCTGTGACCCACCGAGTAGT 59.888 55.000 0.00 0.0 32.73 2.73 R
2628 2807 0.110056 CAGTTGCTTTGCAGCCTACG 60.110 55.000 2.93 0.0 46.74 3.51 R
3294 3480 1.478510 TGCAAACCTTTTCGGAGCAAA 59.521 42.857 0.00 0.0 36.32 3.68 R
3864 4052 3.625764 TGAACCTGACAAGTTACAAGCAC 59.374 43.478 0.00 0.0 0.00 4.40 R
4926 5885 2.431454 TGTCATACCGCTGCATTCAAA 58.569 42.857 0.00 0.0 0.00 2.69 R
5772 6737 0.024364 GCAAAACAAACACGTTGCCG 59.976 50.000 0.00 0.0 41.31 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.906660 TGTCATCTTGTAAAAATGTTTCATACC 57.093 29.630 0.00 0.00 0.00 2.73
170 172 1.383799 CTCCAAGGATGTTGGGCCA 59.616 57.895 0.00 0.00 39.96 5.36
181 183 2.265182 TTGGGCCAGCGTGTTTAGC 61.265 57.895 6.23 0.00 0.00 3.09
182 184 2.671619 GGGCCAGCGTGTTTAGCA 60.672 61.111 4.39 0.00 37.01 3.49
188 190 1.195448 CCAGCGTGTTTAGCAGAACAG 59.805 52.381 5.29 2.57 39.97 3.16
237 240 6.471198 CGTAAAAAGTGAGATATGCTACACGA 59.529 38.462 0.00 0.00 38.15 4.35
240 243 7.470289 AAAAGTGAGATATGCTACACGAATC 57.530 36.000 0.00 0.00 38.15 2.52
241 244 5.127693 AGTGAGATATGCTACACGAATCC 57.872 43.478 0.00 0.00 38.15 3.01
287 291 8.688747 TTTGAAATTTTTGGATTGCTTACCAT 57.311 26.923 0.00 0.00 36.02 3.55
348 352 1.691196 TTTGCAAAGGTCACTCCCAG 58.309 50.000 8.05 0.00 36.75 4.45
353 357 2.229784 GCAAAGGTCACTCCCAGATTTG 59.770 50.000 0.00 0.00 36.75 2.32
365 369 1.613437 CCAGATTTGTTGGTGGTGACC 59.387 52.381 0.00 0.00 43.48 4.02
393 397 5.989777 GTCAGTGTATTACTTGTCACAACCT 59.010 40.000 0.00 0.00 37.60 3.50
418 422 4.524749 GAGTTTTGTGCTTTCTTCCGTAC 58.475 43.478 0.00 0.00 0.00 3.67
419 423 4.196971 AGTTTTGTGCTTTCTTCCGTACT 58.803 39.130 0.00 0.00 0.00 2.73
421 425 3.462483 TTGTGCTTTCTTCCGTACTCA 57.538 42.857 0.00 0.00 0.00 3.41
431 438 8.688184 GCTTTCTTCCGTACTCATTTTTAAAAC 58.312 33.333 0.00 0.00 0.00 2.43
457 464 9.565213 CATTTTATCTCTTTTCACCATGAGTTC 57.435 33.333 0.00 0.00 0.00 3.01
479 486 8.482128 AGTTCAAATCATAAACCTTTTTCACCA 58.518 29.630 0.00 0.00 0.00 4.17
516 523 6.292381 GCGTCAAGATTTTCGCAACTAGATAT 60.292 38.462 0.00 0.00 46.40 1.63
517 524 7.277205 CGTCAAGATTTTCGCAACTAGATATC 58.723 38.462 0.00 0.00 0.00 1.63
518 525 7.043391 CGTCAAGATTTTCGCAACTAGATATCA 60.043 37.037 5.32 0.00 0.00 2.15
519 526 8.768955 GTCAAGATTTTCGCAACTAGATATCAT 58.231 33.333 5.32 0.00 0.00 2.45
520 527 8.768019 TCAAGATTTTCGCAACTAGATATCATG 58.232 33.333 5.32 0.00 0.00 3.07
521 528 8.554528 CAAGATTTTCGCAACTAGATATCATGT 58.445 33.333 5.32 0.10 0.00 3.21
522 529 8.668510 AGATTTTCGCAACTAGATATCATGTT 57.331 30.769 5.32 6.52 0.00 2.71
523 530 9.113838 AGATTTTCGCAACTAGATATCATGTTT 57.886 29.630 5.32 0.00 0.00 2.83
524 531 9.722056 GATTTTCGCAACTAGATATCATGTTTT 57.278 29.630 5.32 0.00 0.00 2.43
788 799 4.176271 GTGCAGAAAAAGAAACTGTGCTT 58.824 39.130 0.00 0.00 34.60 3.91
801 814 4.838152 TGCTTCCGCGGATGCCTC 62.838 66.667 44.31 27.95 42.38 4.70
920 950 7.531857 AGGAAAAGAAAAATCCTTTCTCCTC 57.468 36.000 0.00 1.54 40.70 3.71
973 1003 2.731374 GCCTCCTTCCTCGGATCG 59.269 66.667 0.00 0.00 31.43 3.69
1173 1210 1.977009 GGGCAGGTTGTTAGTGGGC 60.977 63.158 0.00 0.00 0.00 5.36
1231 1268 0.456312 GACGACGCTGGAACCACTAG 60.456 60.000 0.00 0.00 0.00 2.57
1310 1463 5.050490 CACGGGATCTATCTTTACAACCAG 58.950 45.833 0.00 0.00 0.00 4.00
1311 1464 4.715297 ACGGGATCTATCTTTACAACCAGT 59.285 41.667 0.00 0.00 0.00 4.00
1312 1465 5.163437 ACGGGATCTATCTTTACAACCAGTC 60.163 44.000 0.00 0.00 0.00 3.51
1313 1466 5.163447 CGGGATCTATCTTTACAACCAGTCA 60.163 44.000 0.00 0.00 0.00 3.41
1314 1467 6.629515 CGGGATCTATCTTTACAACCAGTCAA 60.630 42.308 0.00 0.00 0.00 3.18
1315 1468 6.539103 GGGATCTATCTTTACAACCAGTCAAC 59.461 42.308 0.00 0.00 0.00 3.18
1316 1469 6.539103 GGATCTATCTTTACAACCAGTCAACC 59.461 42.308 0.00 0.00 0.00 3.77
1317 1470 6.428083 TCTATCTTTACAACCAGTCAACCA 57.572 37.500 0.00 0.00 0.00 3.67
1327 1480 0.034756 CAGTCAACCACGGATGACCA 59.965 55.000 19.48 0.00 45.23 4.02
1347 1500 3.129638 CCACCGTTTTACATTACCATGGG 59.870 47.826 18.09 0.00 34.27 4.00
1350 1503 2.420722 CGTTTTACATTACCATGGGCGT 59.579 45.455 18.09 9.60 34.27 5.68
1362 1515 1.135315 CATGGGCGTGGACAGATTTTG 60.135 52.381 0.00 0.00 0.00 2.44
1395 1548 1.222567 ATCCCATACACCCACCCTTC 58.777 55.000 0.00 0.00 0.00 3.46
1442 1600 0.712380 ATTTGGGCATCAAGGAGGGT 59.288 50.000 0.00 0.00 36.62 4.34
1539 1699 2.208431 GATGCACACAGCCATCTCTAC 58.792 52.381 0.00 0.00 44.83 2.59
1557 1717 7.348080 TCTCTACTGAAACAATGTATCGGAT 57.652 36.000 0.00 0.00 0.00 4.18
1563 1723 6.706270 ACTGAAACAATGTATCGGATATCCAC 59.294 38.462 21.70 12.52 35.14 4.02
1606 1766 2.852180 GCCCAAACACAACCGGTCC 61.852 63.158 8.04 0.00 0.00 4.46
1629 1789 6.724441 TCCATAACGGGATTACATCACTCTAT 59.276 38.462 0.00 0.00 34.36 1.98
1669 1829 3.636764 ACCTCAATCCAAACCAGTTGAAC 59.363 43.478 0.00 0.00 39.87 3.18
1671 1831 2.034053 TCAATCCAAACCAGTTGAACGC 59.966 45.455 0.00 0.00 39.87 4.84
1708 1868 3.703556 TCTCTCAACATTTGCACCCAAAA 59.296 39.130 0.00 0.00 43.58 2.44
1739 1899 3.282021 GCCTAATTCTCTGCATGTTGGA 58.718 45.455 0.00 0.00 0.00 3.53
1740 1900 3.314635 GCCTAATTCTCTGCATGTTGGAG 59.685 47.826 0.00 0.13 37.15 3.86
1836 2003 8.962884 ATTTTGGAAGTTTTGCTCTGTTAAAT 57.037 26.923 0.00 0.00 0.00 1.40
1919 2086 8.866970 ATTTGTGCCTTAAATTTTGGATGAAT 57.133 26.923 12.37 5.41 0.00 2.57
1937 2104 3.451178 TGAATACTGGCCAACTAGTCTCC 59.549 47.826 7.01 0.00 0.00 3.71
1970 2137 3.243569 GGTATGCTAGTAGGCACAGACAG 60.244 52.174 0.00 0.00 45.36 3.51
1972 2139 2.739943 TGCTAGTAGGCACAGACAGAT 58.260 47.619 0.00 0.00 37.29 2.90
1985 2152 5.641209 GCACAGACAGATCAGAATACTTTGT 59.359 40.000 0.00 0.00 0.00 2.83
1989 2156 7.984050 ACAGACAGATCAGAATACTTTGTATGG 59.016 37.037 0.00 0.00 32.38 2.74
2087 2254 7.938140 TCCAATCTTCTAAGGTTTTGGTATG 57.062 36.000 14.24 0.00 34.96 2.39
2144 2311 5.312120 TGAGAAACTGCCGTTTTTGTTTA 57.688 34.783 7.71 0.00 43.09 2.01
2146 2313 5.106078 TGAGAAACTGCCGTTTTTGTTTACT 60.106 36.000 7.71 0.00 43.09 2.24
2157 2324 8.424731 GCCGTTTTTGTTTACTTTCTATGATTG 58.575 33.333 0.00 0.00 0.00 2.67
2207 2374 3.449377 TCGGCATGTAGGTCAGTTAATCA 59.551 43.478 0.00 0.00 0.00 2.57
2224 2391 0.178984 TCACTACTCGGTGGGTCACA 60.179 55.000 0.38 0.00 37.75 3.58
2232 2399 1.760613 TCGGTGGGTCACAGAATATCC 59.239 52.381 0.00 0.00 35.84 2.59
2233 2400 1.484653 CGGTGGGTCACAGAATATCCA 59.515 52.381 0.38 0.00 35.86 3.41
2253 2420 5.441500 TCCAATTAACTGATTTATCGGCCA 58.558 37.500 2.24 0.00 36.64 5.36
2284 2451 5.008217 TGGAAAATTCGCGTATTTATCCCTG 59.992 40.000 28.01 0.00 31.22 4.45
2343 2510 8.729805 ATCTCCTGAACATTGATTAGAACTTC 57.270 34.615 0.00 0.00 0.00 3.01
2431 2598 2.537143 TCCTTGGAGAGTCTACCCAAC 58.463 52.381 8.83 0.00 35.25 3.77
2525 2694 8.574309 AATAGGGAAGGATGATAGAGAAACTT 57.426 34.615 0.00 0.00 0.00 2.66
2529 2698 5.397334 GGAAGGATGATAGAGAAACTTGGCT 60.397 44.000 0.00 0.00 0.00 4.75
2556 2725 8.257306 AGGAAAACAAGTGATGTGTGTAATTTT 58.743 29.630 0.00 0.00 42.99 1.82
2628 2807 4.397481 TGATGTCATCACTCACATCCTC 57.603 45.455 11.62 0.00 45.73 3.71
2690 2869 6.478344 TCACCACACATTTTGATTTTGCTAAC 59.522 34.615 0.00 0.00 0.00 2.34
2728 2907 5.063186 CGAGGTCAACAATTTCTCAGAGATG 59.937 44.000 0.00 0.00 0.00 2.90
2758 2937 1.409241 GCCACATCACACCAGATCCAT 60.409 52.381 0.00 0.00 0.00 3.41
2775 2954 4.271696 TCCATGACTCTTCAACGTTGAT 57.728 40.909 30.10 16.43 37.00 2.57
2819 2999 5.181748 ACACTACTTCATCTTCCAATCTGC 58.818 41.667 0.00 0.00 0.00 4.26
2842 3024 4.264614 CGATCATTTTGCATTGAGTTCAGC 59.735 41.667 0.00 0.00 0.00 4.26
2848 3030 6.832520 TTTTGCATTGAGTTCAGCCTATTA 57.167 33.333 0.00 0.00 0.00 0.98
2861 3043 7.770897 AGTTCAGCCTATTAGTTCCTATTGTTG 59.229 37.037 0.00 0.00 0.00 3.33
2933 3115 6.229936 TGTGACCAACCAGTATATCTTACC 57.770 41.667 0.00 0.00 0.00 2.85
3038 3220 2.890945 GGTTGCCTGTACTTTTCACCAT 59.109 45.455 0.00 0.00 0.00 3.55
3115 3297 5.293814 CCAATAAGAGATGACTGAGCAACTG 59.706 44.000 0.00 0.00 0.00 3.16
3159 3345 7.765695 AATCTGGATGCACCGAAATAATTAT 57.234 32.000 0.00 0.00 42.61 1.28
3278 3464 9.378551 GTATGGTACTCATTTGTATGAACTCAA 57.621 33.333 2.73 0.00 40.17 3.02
3311 3497 4.494484 GCATATTTGCTCCGAAAAGGTTT 58.506 39.130 0.35 0.00 45.77 3.27
3332 3518 1.331756 GCACGGCAGATGTATTCTTGG 59.668 52.381 0.00 0.00 29.93 3.61
3352 3538 3.320541 TGGTTCTTTGATTCGGCAATTGT 59.679 39.130 7.40 0.00 0.00 2.71
3354 3540 5.095490 GGTTCTTTGATTCGGCAATTGTAG 58.905 41.667 7.40 1.66 0.00 2.74
3389 3575 3.435590 CCAAGTGTGTGGTGCTGG 58.564 61.111 0.00 0.00 33.63 4.85
3471 3658 6.037062 TGCAGTATCATATTCACCGAAACTTG 59.963 38.462 0.00 0.00 0.00 3.16
3481 3668 3.314080 TCACCGAAACTTGATTTCACCAC 59.686 43.478 0.79 0.00 46.18 4.16
3715 3902 7.461749 AGTTCCTTCCTTATGATCTTTGTTCA 58.538 34.615 0.00 0.00 0.00 3.18
3722 3909 6.434028 TCCTTATGATCTTTGTTCAAACCCAG 59.566 38.462 0.00 0.00 0.00 4.45
3864 4052 6.203145 TGAAATGAGATGGCAATTTTGTGTTG 59.797 34.615 0.00 0.00 0.00 3.33
4253 5211 4.631131 TGTTATGCTATCGAACTCATGGG 58.369 43.478 0.00 0.00 0.00 4.00
4271 5229 5.485353 TCATGGGGTACATAAATTTGGCAAA 59.515 36.000 16.01 16.01 37.84 3.68
4321 5279 8.893727 CAAAAAGAACGGGATTATCTTGATAGT 58.106 33.333 0.00 0.00 33.86 2.12
4354 5312 4.694982 CCTAGTGTTCACATGCAATACACA 59.305 41.667 17.65 4.60 41.07 3.72
4372 5330 9.180678 CAATACACAAAACCTCTGATTTACAAC 57.819 33.333 0.00 0.00 0.00 3.32
4374 5332 7.164230 ACACAAAACCTCTGATTTACAACAA 57.836 32.000 0.00 0.00 0.00 2.83
4376 5334 8.091449 ACACAAAACCTCTGATTTACAACAAAA 58.909 29.630 0.00 0.00 0.00 2.44
4430 5388 9.793259 ATTTACTCAAAACAGACCTAAGATTCA 57.207 29.630 0.00 0.00 0.00 2.57
4477 5435 9.366216 GTAAGATGTCATGTGTTTATCAGTGTA 57.634 33.333 0.00 0.00 0.00 2.90
4532 5491 4.833390 AGACATTACAGGTAGGTGCTTTC 58.167 43.478 0.00 0.00 0.00 2.62
4609 5568 4.585879 TGGTTATTACCTGCCAAACTCTC 58.414 43.478 2.04 0.00 45.27 3.20
4615 5574 1.771255 ACCTGCCAAACTCTCTTCTGT 59.229 47.619 0.00 0.00 0.00 3.41
4627 5586 9.092876 CAAACTCTCTTCTGTGACTATTTATCC 57.907 37.037 0.00 0.00 0.00 2.59
4628 5587 7.354751 ACTCTCTTCTGTGACTATTTATCCC 57.645 40.000 0.00 0.00 0.00 3.85
4926 5885 7.016153 TGACTACAACCTCTTATCAACCATT 57.984 36.000 0.00 0.00 0.00 3.16
5026 5985 2.621668 GGCCAAGGAGTGCCTAGAAAAT 60.622 50.000 0.00 0.00 46.28 1.82
5058 6017 3.070018 AGAACAAGCAAGATGGAACTCG 58.930 45.455 0.00 0.00 0.00 4.18
5287 6250 7.472334 AATTGTAAGCCATCACTGAATTCTT 57.528 32.000 7.05 0.00 0.00 2.52
5378 6341 4.835284 TGCACTATTGGTCCATTCAGTA 57.165 40.909 0.00 0.00 0.00 2.74
5386 6349 8.768397 ACTATTGGTCCATTCAGTAACATCTTA 58.232 33.333 0.00 0.00 0.00 2.10
5387 6350 9.784531 CTATTGGTCCATTCAGTAACATCTTAT 57.215 33.333 0.00 0.00 0.00 1.73
5388 6351 8.682936 ATTGGTCCATTCAGTAACATCTTATC 57.317 34.615 0.00 0.00 0.00 1.75
5390 6353 8.547481 TGGTCCATTCAGTAACATCTTATCTA 57.453 34.615 0.00 0.00 0.00 1.98
5391 6354 9.159254 TGGTCCATTCAGTAACATCTTATCTAT 57.841 33.333 0.00 0.00 0.00 1.98
5392 6355 9.429359 GGTCCATTCAGTAACATCTTATCTATG 57.571 37.037 0.00 0.00 0.00 2.23
5393 6356 8.930760 GTCCATTCAGTAACATCTTATCTATGC 58.069 37.037 0.00 0.00 0.00 3.14
5394 6357 7.814587 TCCATTCAGTAACATCTTATCTATGCG 59.185 37.037 0.00 0.00 0.00 4.73
5395 6358 7.814587 CCATTCAGTAACATCTTATCTATGCGA 59.185 37.037 0.00 0.00 0.00 5.10
5396 6359 8.858186 CATTCAGTAACATCTTATCTATGCGAG 58.142 37.037 0.00 0.00 0.00 5.03
5398 6361 7.585867 TCAGTAACATCTTATCTATGCGAGAC 58.414 38.462 0.00 0.00 36.87 3.36
5424 6388 4.286297 ACCATTTCTTCTCATCGTTGGA 57.714 40.909 0.00 0.00 0.00 3.53
5467 6431 5.107375 CCTGGAATGCAAATTCGTTTTGAAG 60.107 40.000 14.77 4.86 46.36 3.02
5546 6510 2.009051 TGCCGAACAGAGCATATTGTG 58.991 47.619 0.00 0.00 33.08 3.33
5629 6594 3.555139 GTCTCTCGCTGATCCAAGATTTG 59.445 47.826 0.00 0.00 0.00 2.32
5719 6684 1.347707 AGTTGAGGTGAGCAATCCGAA 59.652 47.619 0.00 0.00 0.00 4.30
5772 6737 8.114331 TGAATGGGCATGACATATTTTCTATC 57.886 34.615 0.00 0.00 0.00 2.08
5775 6740 4.142600 GGGCATGACATATTTTCTATCGGC 60.143 45.833 0.00 0.00 0.00 5.54
5813 6782 9.474920 TTTGCAAAAATCAGGTCTATTACAAAG 57.525 29.630 10.02 0.00 0.00 2.77
5814 6783 8.402798 TGCAAAAATCAGGTCTATTACAAAGA 57.597 30.769 0.00 0.00 0.00 2.52
5822 6791 8.473358 TCAGGTCTATTACAAAGATTCCGATA 57.527 34.615 0.00 0.00 0.00 2.92
5825 6794 8.701895 AGGTCTATTACAAAGATTCCGATACAA 58.298 33.333 0.00 0.00 0.00 2.41
5837 6806 3.950397 TCCGATACAAAGCACCTCAAAT 58.050 40.909 0.00 0.00 0.00 2.32
5894 6863 8.723942 TTAGAAAGATTCTGATAGAAAGCACC 57.276 34.615 2.94 0.00 40.94 5.01
5895 6864 6.956497 AGAAAGATTCTGATAGAAAGCACCT 58.044 36.000 0.00 0.00 37.82 4.00
5896 6865 7.047271 AGAAAGATTCTGATAGAAAGCACCTC 58.953 38.462 0.00 0.00 37.82 3.85
5897 6866 5.946942 AGATTCTGATAGAAAGCACCTCA 57.053 39.130 0.00 0.00 37.82 3.86
5898 6867 6.305272 AGATTCTGATAGAAAGCACCTCAA 57.695 37.500 0.00 0.00 37.82 3.02
5899 6868 6.715280 AGATTCTGATAGAAAGCACCTCAAA 58.285 36.000 0.00 0.00 37.82 2.69
5900 6869 6.597280 AGATTCTGATAGAAAGCACCTCAAAC 59.403 38.462 0.00 0.00 37.82 2.93
5901 6870 5.227569 TCTGATAGAAAGCACCTCAAACA 57.772 39.130 0.00 0.00 0.00 2.83
5902 6871 5.809001 TCTGATAGAAAGCACCTCAAACAT 58.191 37.500 0.00 0.00 0.00 2.71
5903 6872 6.946340 TCTGATAGAAAGCACCTCAAACATA 58.054 36.000 0.00 0.00 0.00 2.29
5904 6873 7.394016 TCTGATAGAAAGCACCTCAAACATAA 58.606 34.615 0.00 0.00 0.00 1.90
5905 6874 8.049117 TCTGATAGAAAGCACCTCAAACATAAT 58.951 33.333 0.00 0.00 0.00 1.28
5906 6875 9.330063 CTGATAGAAAGCACCTCAAACATAATA 57.670 33.333 0.00 0.00 0.00 0.98
5907 6876 9.679661 TGATAGAAAGCACCTCAAACATAATAA 57.320 29.630 0.00 0.00 0.00 1.40
5911 6880 9.643693 AGAAAGCACCTCAAACATAATAAAATG 57.356 29.630 0.00 0.00 0.00 2.32
5912 6881 9.638239 GAAAGCACCTCAAACATAATAAAATGA 57.362 29.630 0.00 0.00 0.00 2.57
5913 6882 8.986477 AAGCACCTCAAACATAATAAAATGAC 57.014 30.769 0.00 0.00 0.00 3.06
5914 6883 8.121305 AGCACCTCAAACATAATAAAATGACA 57.879 30.769 0.00 0.00 0.00 3.58
5915 6884 8.752187 AGCACCTCAAACATAATAAAATGACAT 58.248 29.630 0.00 0.00 0.00 3.06
5916 6885 9.023967 GCACCTCAAACATAATAAAATGACATC 57.976 33.333 0.00 0.00 0.00 3.06
5917 6886 9.225201 CACCTCAAACATAATAAAATGACATCG 57.775 33.333 0.00 0.00 0.00 3.84
5918 6887 9.173021 ACCTCAAACATAATAAAATGACATCGA 57.827 29.630 0.00 0.00 0.00 3.59
5919 6888 9.655769 CCTCAAACATAATAAAATGACATCGAG 57.344 33.333 0.00 0.00 0.00 4.04
5920 6889 9.655769 CTCAAACATAATAAAATGACATCGAGG 57.344 33.333 0.00 0.00 0.00 4.63
5921 6890 8.620416 TCAAACATAATAAAATGACATCGAGGG 58.380 33.333 0.69 0.00 0.00 4.30
5922 6891 8.405531 CAAACATAATAAAATGACATCGAGGGT 58.594 33.333 0.69 0.00 0.00 4.34
5923 6892 8.519799 AACATAATAAAATGACATCGAGGGTT 57.480 30.769 0.69 0.00 0.00 4.11
5924 6893 9.621629 AACATAATAAAATGACATCGAGGGTTA 57.378 29.630 0.69 0.00 0.00 2.85
5925 6894 9.793259 ACATAATAAAATGACATCGAGGGTTAT 57.207 29.630 0.69 0.00 0.00 1.89
5927 6896 7.510549 AATAAAATGACATCGAGGGTTATGG 57.489 36.000 0.69 0.00 0.00 2.74
5928 6897 4.771114 AAATGACATCGAGGGTTATGGA 57.229 40.909 0.69 0.00 0.00 3.41
5929 6898 3.753294 ATGACATCGAGGGTTATGGAC 57.247 47.619 0.69 0.00 0.00 4.02
5942 6911 3.340034 GTTATGGACCATCAAACGACCA 58.660 45.455 11.17 0.00 0.00 4.02
5943 6912 2.806945 ATGGACCATCAAACGACCAT 57.193 45.000 0.00 0.00 33.98 3.55
5944 6913 2.577606 TGGACCATCAAACGACCATT 57.422 45.000 0.00 0.00 0.00 3.16
5945 6914 3.704800 TGGACCATCAAACGACCATTA 57.295 42.857 0.00 0.00 0.00 1.90
5946 6915 4.022413 TGGACCATCAAACGACCATTAA 57.978 40.909 0.00 0.00 0.00 1.40
5947 6916 3.754323 TGGACCATCAAACGACCATTAAC 59.246 43.478 0.00 0.00 0.00 2.01
5948 6917 3.181514 GGACCATCAAACGACCATTAACG 60.182 47.826 0.00 0.00 0.00 3.18
5949 6918 2.160813 ACCATCAAACGACCATTAACGC 59.839 45.455 0.00 0.00 0.00 4.84
5950 6919 2.477189 CCATCAAACGACCATTAACGCC 60.477 50.000 0.00 0.00 0.00 5.68
5951 6920 1.880271 TCAAACGACCATTAACGCCA 58.120 45.000 0.00 0.00 0.00 5.69
5952 6921 1.532007 TCAAACGACCATTAACGCCAC 59.468 47.619 0.00 0.00 0.00 5.01
5953 6922 1.533731 CAAACGACCATTAACGCCACT 59.466 47.619 0.00 0.00 0.00 4.00
5954 6923 2.737783 CAAACGACCATTAACGCCACTA 59.262 45.455 0.00 0.00 0.00 2.74
5955 6924 2.747396 ACGACCATTAACGCCACTAA 57.253 45.000 0.00 0.00 0.00 2.24
5956 6925 3.042871 ACGACCATTAACGCCACTAAA 57.957 42.857 0.00 0.00 0.00 1.85
5957 6926 3.401182 ACGACCATTAACGCCACTAAAA 58.599 40.909 0.00 0.00 0.00 1.52
5958 6927 4.004982 ACGACCATTAACGCCACTAAAAT 58.995 39.130 0.00 0.00 0.00 1.82
5959 6928 5.177326 ACGACCATTAACGCCACTAAAATA 58.823 37.500 0.00 0.00 0.00 1.40
5960 6929 5.642919 ACGACCATTAACGCCACTAAAATAA 59.357 36.000 0.00 0.00 0.00 1.40
5961 6930 6.149142 ACGACCATTAACGCCACTAAAATAAA 59.851 34.615 0.00 0.00 0.00 1.40
5962 6931 6.466730 CGACCATTAACGCCACTAAAATAAAC 59.533 38.462 0.00 0.00 0.00 2.01
5963 6932 6.623486 ACCATTAACGCCACTAAAATAAACC 58.377 36.000 0.00 0.00 0.00 3.27
5964 6933 5.740099 CCATTAACGCCACTAAAATAAACCG 59.260 40.000 0.00 0.00 0.00 4.44
5965 6934 2.905959 ACGCCACTAAAATAAACCGC 57.094 45.000 0.00 0.00 0.00 5.68
5966 6935 1.469703 ACGCCACTAAAATAAACCGCC 59.530 47.619 0.00 0.00 0.00 6.13
5967 6936 1.530236 CGCCACTAAAATAAACCGCCG 60.530 52.381 0.00 0.00 0.00 6.46
5968 6937 1.738908 GCCACTAAAATAAACCGCCGA 59.261 47.619 0.00 0.00 0.00 5.54
5969 6938 2.476686 GCCACTAAAATAAACCGCCGAC 60.477 50.000 0.00 0.00 0.00 4.79
5970 6939 2.743126 CCACTAAAATAAACCGCCGACA 59.257 45.455 0.00 0.00 0.00 4.35
5971 6940 3.425227 CCACTAAAATAAACCGCCGACAC 60.425 47.826 0.00 0.00 0.00 3.67
5972 6941 2.412770 ACTAAAATAAACCGCCGACACG 59.587 45.455 0.00 0.00 0.00 4.49
5973 6942 0.110101 AAAATAAACCGCCGACACGC 60.110 50.000 0.00 0.00 0.00 5.34
5974 6943 1.914531 AAATAAACCGCCGACACGCC 61.915 55.000 0.00 0.00 0.00 5.68
5975 6944 3.592856 ATAAACCGCCGACACGCCA 62.593 57.895 0.00 0.00 0.00 5.69
5981 6950 4.961511 GCCGACACGCCACTGTCA 62.962 66.667 4.96 0.00 40.67 3.58
5982 6951 2.048222 CCGACACGCCACTGTCAT 60.048 61.111 4.96 0.00 40.67 3.06
5983 6952 1.667830 CCGACACGCCACTGTCATT 60.668 57.895 4.96 0.00 40.67 2.57
5984 6953 1.492873 CGACACGCCACTGTCATTG 59.507 57.895 4.96 0.00 40.67 2.82
5985 6954 1.207593 GACACGCCACTGTCATTGC 59.792 57.895 0.00 0.00 40.40 3.56
5986 6955 2.187599 GACACGCCACTGTCATTGCC 62.188 60.000 0.00 0.00 40.40 4.52
5987 6956 2.672996 ACGCCACTGTCATTGCCC 60.673 61.111 0.00 0.00 0.00 5.36
5988 6957 3.443045 CGCCACTGTCATTGCCCC 61.443 66.667 0.00 0.00 0.00 5.80
5989 6958 2.283101 GCCACTGTCATTGCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
5990 6959 1.907807 GCCACTGTCATTGCCCCAA 60.908 57.895 0.00 0.00 0.00 4.12
5991 6960 1.259840 GCCACTGTCATTGCCCCAAT 61.260 55.000 0.00 0.00 34.04 3.16
5999 6968 2.607631 CATTGCCCCAATGGATGTTC 57.392 50.000 0.00 0.00 45.03 3.18
6000 6969 1.832366 CATTGCCCCAATGGATGTTCA 59.168 47.619 0.00 0.00 45.03 3.18
6001 6970 1.265236 TTGCCCCAATGGATGTTCAC 58.735 50.000 0.00 0.00 35.39 3.18
6002 6971 0.964860 TGCCCCAATGGATGTTCACG 60.965 55.000 0.00 0.00 35.39 4.35
6003 6972 1.666209 GCCCCAATGGATGTTCACGG 61.666 60.000 0.00 0.00 35.39 4.94
6004 6973 0.034574 CCCCAATGGATGTTCACGGA 60.035 55.000 0.00 0.00 35.39 4.69
6005 6974 1.382522 CCCAATGGATGTTCACGGAG 58.617 55.000 0.00 0.00 0.00 4.63
6006 6975 1.065491 CCCAATGGATGTTCACGGAGA 60.065 52.381 0.00 0.00 0.00 3.71
6007 6976 2.283298 CCAATGGATGTTCACGGAGAG 58.717 52.381 0.00 0.00 0.00 3.20
6008 6977 1.667724 CAATGGATGTTCACGGAGAGC 59.332 52.381 0.00 0.00 0.00 4.09
6009 6978 1.198713 ATGGATGTTCACGGAGAGCT 58.801 50.000 0.00 0.00 0.00 4.09
6010 6979 0.247460 TGGATGTTCACGGAGAGCTG 59.753 55.000 0.00 0.00 0.00 4.24
6011 6980 0.532573 GGATGTTCACGGAGAGCTGA 59.467 55.000 0.00 0.00 0.00 4.26
6012 6981 1.634702 GATGTTCACGGAGAGCTGAC 58.365 55.000 0.00 0.00 0.00 3.51
6013 6982 0.247736 ATGTTCACGGAGAGCTGACC 59.752 55.000 0.00 0.00 0.00 4.02
6014 6983 1.112916 TGTTCACGGAGAGCTGACCA 61.113 55.000 0.00 0.00 0.00 4.02
6015 6984 0.033504 GTTCACGGAGAGCTGACCAA 59.966 55.000 0.00 0.00 0.00 3.67
6016 6985 0.976641 TTCACGGAGAGCTGACCAAT 59.023 50.000 0.00 0.00 0.00 3.16
6017 6986 1.847328 TCACGGAGAGCTGACCAATA 58.153 50.000 0.00 0.00 0.00 1.90
6018 6987 1.476891 TCACGGAGAGCTGACCAATAC 59.523 52.381 0.00 0.00 0.00 1.89
6019 6988 1.204704 CACGGAGAGCTGACCAATACA 59.795 52.381 0.00 0.00 0.00 2.29
6020 6989 1.899814 ACGGAGAGCTGACCAATACAA 59.100 47.619 0.00 0.00 0.00 2.41
6021 6990 2.271800 CGGAGAGCTGACCAATACAAC 58.728 52.381 0.00 0.00 0.00 3.32
6022 6991 2.353704 CGGAGAGCTGACCAATACAACA 60.354 50.000 0.00 0.00 0.00 3.33
6023 6992 3.674997 GGAGAGCTGACCAATACAACAA 58.325 45.455 0.00 0.00 0.00 2.83
6024 6993 4.265073 GGAGAGCTGACCAATACAACAAT 58.735 43.478 0.00 0.00 0.00 2.71
6025 6994 4.095483 GGAGAGCTGACCAATACAACAATG 59.905 45.833 0.00 0.00 0.00 2.82
6026 6995 3.441572 AGAGCTGACCAATACAACAATGC 59.558 43.478 0.00 0.00 0.00 3.56
6027 6996 2.493278 AGCTGACCAATACAACAATGCC 59.507 45.455 0.00 0.00 0.00 4.40
6028 6997 2.731968 GCTGACCAATACAACAATGCCG 60.732 50.000 0.00 0.00 0.00 5.69
6029 6998 1.815613 TGACCAATACAACAATGCCGG 59.184 47.619 0.00 0.00 0.00 6.13
6030 6999 0.530288 ACCAATACAACAATGCCGGC 59.470 50.000 22.73 22.73 0.00 6.13
6031 7000 0.529833 CCAATACAACAATGCCGGCA 59.470 50.000 34.80 34.80 0.00 5.69
6032 7001 1.136695 CCAATACAACAATGCCGGCAT 59.863 47.619 36.10 36.10 38.46 4.40
6033 7002 2.462889 CAATACAACAATGCCGGCATC 58.537 47.619 40.38 6.48 35.31 3.91
6034 7003 1.032014 ATACAACAATGCCGGCATCC 58.968 50.000 40.38 6.05 35.31 3.51
6035 7004 0.322906 TACAACAATGCCGGCATCCA 60.323 50.000 40.38 19.29 35.31 3.41
6036 7005 0.971959 ACAACAATGCCGGCATCCAT 60.972 50.000 40.38 25.68 35.31 3.41
6037 7006 0.528901 CAACAATGCCGGCATCCATG 60.529 55.000 40.38 34.22 35.31 3.66
6038 7007 1.678598 AACAATGCCGGCATCCATGG 61.679 55.000 40.38 27.15 35.31 3.66
6039 7008 1.829096 CAATGCCGGCATCCATGGA 60.829 57.895 40.38 18.88 35.31 3.41
6040 7009 1.829533 AATGCCGGCATCCATGGAC 60.830 57.895 40.38 5.01 35.31 4.02
6041 7010 2.570774 AATGCCGGCATCCATGGACA 62.571 55.000 40.38 10.70 35.31 4.02
6042 7011 2.440065 GCCGGCATCCATGGACAA 60.440 61.111 24.80 0.00 0.00 3.18
6043 7012 2.051518 GCCGGCATCCATGGACAAA 61.052 57.895 24.80 0.00 0.00 2.83
6044 7013 1.603236 GCCGGCATCCATGGACAAAA 61.603 55.000 24.80 0.00 0.00 2.44
6045 7014 1.113788 CCGGCATCCATGGACAAAAT 58.886 50.000 18.99 0.00 0.00 1.82
6046 7015 1.481772 CCGGCATCCATGGACAAAATT 59.518 47.619 18.99 0.00 0.00 1.82
6047 7016 2.093553 CCGGCATCCATGGACAAAATTT 60.094 45.455 18.99 0.00 0.00 1.82
6048 7017 2.931325 CGGCATCCATGGACAAAATTTG 59.069 45.455 18.99 10.86 0.00 2.32
6049 7018 3.272581 GGCATCCATGGACAAAATTTGG 58.727 45.455 18.99 0.00 34.12 3.28
6050 7019 3.055240 GGCATCCATGGACAAAATTTGGA 60.055 43.478 18.99 0.00 40.54 3.53
6051 7020 4.565236 GGCATCCATGGACAAAATTTGGAA 60.565 41.667 18.99 0.00 39.74 3.53
6052 7021 5.002516 GCATCCATGGACAAAATTTGGAAA 58.997 37.500 18.99 0.00 39.74 3.13
6053 7022 5.472820 GCATCCATGGACAAAATTTGGAAAA 59.527 36.000 18.99 0.00 39.74 2.29
6054 7023 6.151480 GCATCCATGGACAAAATTTGGAAAAT 59.849 34.615 18.99 0.00 39.74 1.82
6055 7024 7.309316 GCATCCATGGACAAAATTTGGAAAATT 60.309 33.333 18.99 0.00 39.74 1.82
6056 7025 9.228949 CATCCATGGACAAAATTTGGAAAATTA 57.771 29.630 18.99 0.00 39.74 1.40
6057 7026 8.845413 TCCATGGACAAAATTTGGAAAATTAG 57.155 30.769 11.44 0.00 33.66 1.73
6058 7027 8.435982 TCCATGGACAAAATTTGGAAAATTAGT 58.564 29.630 11.44 1.92 33.66 2.24
6059 7028 9.065798 CCATGGACAAAATTTGGAAAATTAGTT 57.934 29.630 5.56 0.00 34.12 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.681692 TTTTACAAGATGACAAGAACATTCATG 57.318 29.630 0.00 0.00 29.93 3.07
6 7 9.868277 AAACATTTTTACAAGATGACAAGAACA 57.132 25.926 0.00 0.00 0.00 3.18
12 13 9.906660 GGTATGAAACATTTTTACAAGATGACA 57.093 29.630 0.00 0.00 0.00 3.58
38 39 4.849383 CGGTTTCTATGTGGCTTTTAAACG 59.151 41.667 0.00 0.00 0.00 3.60
82 84 8.769891 GTGGTTTTTCTTCTTCTTTTTGTTTCA 58.230 29.630 0.00 0.00 0.00 2.69
170 172 2.240493 ACTGTTCTGCTAAACACGCT 57.760 45.000 1.04 0.00 35.39 5.07
181 183 2.516923 CCGCTACGTCTTACTGTTCTG 58.483 52.381 0.00 0.00 0.00 3.02
182 184 1.471684 CCCGCTACGTCTTACTGTTCT 59.528 52.381 0.00 0.00 0.00 3.01
188 190 0.957362 ATAGCCCCGCTACGTCTTAC 59.043 55.000 0.00 0.00 44.24 2.34
270 274 8.629158 GTGACATATATGGTAAGCAATCCAAAA 58.371 33.333 16.96 0.00 37.27 2.44
365 369 7.420184 TGTGACAAGTAATACACTGACAATG 57.580 36.000 0.00 0.00 37.63 2.82
367 371 6.259167 GGTTGTGACAAGTAATACACTGACAA 59.741 38.462 0.00 0.00 37.63 3.18
379 383 1.411246 ACTCGCAGGTTGTGACAAGTA 59.589 47.619 0.00 0.00 32.83 2.24
393 397 2.223479 GGAAGAAAGCACAAAACTCGCA 60.223 45.455 0.00 0.00 0.00 5.10
431 438 9.565213 GAACTCATGGTGAAAAGAGATAAAATG 57.435 33.333 0.00 0.00 32.59 2.32
444 451 7.451255 AGGTTTATGATTTGAACTCATGGTGAA 59.549 33.333 8.12 0.00 35.12 3.18
445 452 6.947733 AGGTTTATGATTTGAACTCATGGTGA 59.052 34.615 8.12 0.00 35.12 4.02
446 453 7.161773 AGGTTTATGATTTGAACTCATGGTG 57.838 36.000 8.12 0.00 35.12 4.17
453 460 8.482128 TGGTGAAAAAGGTTTATGATTTGAACT 58.518 29.630 0.00 0.00 0.00 3.01
457 464 8.016801 GCAATGGTGAAAAAGGTTTATGATTTG 58.983 33.333 0.00 0.00 0.00 2.32
524 531 5.249780 TGGTATCTAGTTGCTCCCAAAAA 57.750 39.130 0.00 0.00 31.68 1.94
525 532 4.919774 TGGTATCTAGTTGCTCCCAAAA 57.080 40.909 0.00 0.00 31.68 2.44
526 533 4.227300 ACATGGTATCTAGTTGCTCCCAAA 59.773 41.667 0.00 0.00 31.68 3.28
527 534 3.780294 ACATGGTATCTAGTTGCTCCCAA 59.220 43.478 0.00 0.00 0.00 4.12
528 535 3.384168 ACATGGTATCTAGTTGCTCCCA 58.616 45.455 0.00 0.00 0.00 4.37
529 536 4.423625 AACATGGTATCTAGTTGCTCCC 57.576 45.455 0.00 0.00 0.00 4.30
530 537 8.585881 TCTATTAACATGGTATCTAGTTGCTCC 58.414 37.037 0.00 0.00 0.00 4.70
712 721 7.495135 TTCAGGGCAAAAATGATTTCTTTTC 57.505 32.000 0.00 0.00 0.00 2.29
800 813 0.317854 CGGAAGATGCGACTATGCGA 60.318 55.000 0.00 0.00 37.81 5.10
801 814 1.278172 CCGGAAGATGCGACTATGCG 61.278 60.000 0.00 0.00 37.81 4.73
802 815 0.032130 TCCGGAAGATGCGACTATGC 59.968 55.000 0.00 0.00 30.86 3.14
803 816 1.932604 GCTCCGGAAGATGCGACTATG 60.933 57.143 5.23 0.00 30.86 2.23
804 817 0.315568 GCTCCGGAAGATGCGACTAT 59.684 55.000 5.23 0.00 30.86 2.12
805 818 0.752009 AGCTCCGGAAGATGCGACTA 60.752 55.000 5.23 0.00 30.86 2.59
806 819 1.608717 AAGCTCCGGAAGATGCGACT 61.609 55.000 5.23 0.00 30.86 4.18
807 820 0.741221 AAAGCTCCGGAAGATGCGAC 60.741 55.000 5.23 0.00 30.86 5.19
1173 1210 2.700897 CCCACCAATCCTACTAGACAGG 59.299 54.545 0.00 2.53 34.20 4.00
1211 1248 0.892358 TAGTGGTTCCAGCGTCGTCT 60.892 55.000 0.00 0.00 0.00 4.18
1214 1251 0.456221 ATCTAGTGGTTCCAGCGTCG 59.544 55.000 0.00 0.00 0.00 5.12
1231 1268 5.977725 CAGCAATCCATTTCTCATGTGAATC 59.022 40.000 10.79 0.00 0.00 2.52
1310 1463 0.953960 GGTGGTCATCCGTGGTTGAC 60.954 60.000 17.87 17.87 41.52 3.18
1311 1464 1.373435 GGTGGTCATCCGTGGTTGA 59.627 57.895 0.00 0.00 36.30 3.18
1312 1465 2.032634 CGGTGGTCATCCGTGGTTG 61.033 63.158 0.00 0.00 42.62 3.77
1313 1466 2.345991 CGGTGGTCATCCGTGGTT 59.654 61.111 0.00 0.00 42.62 3.67
1327 1480 2.756207 GCCCATGGTAATGTAAAACGGT 59.244 45.455 11.73 0.00 31.27 4.83
1347 1500 1.621107 CATGCAAAATCTGTCCACGC 58.379 50.000 0.00 0.00 0.00 5.34
1350 1503 1.559368 CCCCATGCAAAATCTGTCCA 58.441 50.000 0.00 0.00 0.00 4.02
1362 1515 0.469705 TGGGATATGTTGCCCCATGC 60.470 55.000 0.00 0.00 44.67 4.06
1395 1548 6.570692 AGGATTAGTTCATAAGTACACCACG 58.429 40.000 0.00 0.00 0.00 4.94
1539 1699 6.705825 TGTGGATATCCGATACATTGTTTCAG 59.294 38.462 17.04 0.00 39.43 3.02
1557 1717 7.914427 ATATCTCCTTGTACAACTGTGGATA 57.086 36.000 13.11 8.05 0.00 2.59
1563 1723 6.703607 CCTTGCTATATCTCCTTGTACAACTG 59.296 42.308 3.59 0.00 0.00 3.16
1606 1766 6.311445 GCATAGAGTGATGTAATCCCGTTATG 59.689 42.308 0.00 0.00 44.73 1.90
1613 1773 7.390027 AGGTTATGCATAGAGTGATGTAATCC 58.610 38.462 6.50 0.00 44.73 3.01
1629 1789 4.966168 TGAGGTCCAGTAATAGGTTATGCA 59.034 41.667 0.00 0.00 0.00 3.96
1671 1831 6.470278 TGTTGAGAGATATTAGCATGGGATG 58.530 40.000 0.00 0.00 0.00 3.51
1722 1882 3.265221 TCTCCTCCAACATGCAGAGAATT 59.735 43.478 8.41 0.00 0.00 2.17
1739 1899 3.713248 TCTCCAACATGCATATGTCTCCT 59.287 43.478 0.00 0.00 46.54 3.69
1740 1900 4.063689 CTCTCCAACATGCATATGTCTCC 58.936 47.826 0.00 0.00 46.54 3.71
1784 1951 3.430374 GCAGGTTATCTTCCGAGCTACAA 60.430 47.826 0.00 0.00 0.00 2.41
1836 2003 5.870706 TGGGACTGTGTAATGATTTGTGTA 58.129 37.500 0.00 0.00 0.00 2.90
1854 2021 4.503123 GCCTTATTATGGGCAATTTGGGAC 60.503 45.833 0.00 0.00 46.84 4.46
1919 2086 1.005097 TCGGAGACTAGTTGGCCAGTA 59.995 52.381 5.11 0.52 0.00 2.74
1937 2104 5.175126 CCTACTAGCATACCGAATTTGTTCG 59.825 44.000 3.75 3.75 43.51 3.95
1970 2137 7.630924 CGGTTTCCATACAAAGTATTCTGATC 58.369 38.462 0.00 0.00 0.00 2.92
1972 2139 5.353123 GCGGTTTCCATACAAAGTATTCTGA 59.647 40.000 0.00 0.00 0.00 3.27
1985 2152 2.887783 ACACACATTTGCGGTTTCCATA 59.112 40.909 0.00 0.00 0.00 2.74
1989 2156 2.920647 GCCTACACACATTTGCGGTTTC 60.921 50.000 0.00 0.00 0.00 2.78
2051 2218 9.549078 CCTTAGAAGATTGGAACTCTTAATACC 57.451 37.037 0.00 0.00 33.18 2.73
2144 2311 5.163622 CGGAACAATGCCAATCATAGAAAGT 60.164 40.000 0.00 0.00 34.33 2.66
2146 2313 4.946772 TCGGAACAATGCCAATCATAGAAA 59.053 37.500 0.00 0.00 34.33 2.52
2192 2359 5.356470 ACCGAGTAGTGATTAACTGACCTAC 59.644 44.000 0.00 0.00 40.26 3.18
2207 2374 0.111832 TCTGTGACCCACCGAGTAGT 59.888 55.000 0.00 0.00 32.73 2.73
2232 2399 9.743057 TTAATTGGCCGATAAATCAGTTAATTG 57.257 29.630 5.71 0.00 0.00 2.32
2259 2426 5.591067 AGGGATAAATACGCGAATTTTCCAA 59.409 36.000 15.93 0.00 32.96 3.53
2343 2510 8.922676 CCAACATCATGAAAAGAGAAGAAAATG 58.077 33.333 0.00 0.00 0.00 2.32
2431 2598 1.432514 CGCCCCTGATCATAACATCG 58.567 55.000 0.00 0.00 0.00 3.84
2483 2650 3.940174 TATTTTCGGCTGTGCTGGGCA 62.940 52.381 0.00 0.00 35.34 5.36
2525 2694 3.820467 CACATCACTTGTTTTCCTAGCCA 59.180 43.478 0.00 0.00 36.00 4.75
2529 2698 8.458573 AATTACACACATCACTTGTTTTCCTA 57.541 30.769 0.00 0.00 36.00 2.94
2556 2725 0.324275 GTTGGGCAGGCCAGGATAAA 60.324 55.000 16.62 0.00 37.98 1.40
2568 2737 0.178967 TTCAGGCTGAATGTTGGGCA 60.179 50.000 25.38 0.29 30.26 5.36
2628 2807 0.110056 CAGTTGCTTTGCAGCCTACG 60.110 55.000 2.93 0.00 46.74 3.51
2690 2869 1.459592 GACCTCGACACATTTGAACCG 59.540 52.381 0.00 0.00 0.00 4.44
2728 2907 1.737236 TGTGATGTGGCAAGATAACGC 59.263 47.619 0.00 0.00 0.00 4.84
2758 2937 4.053469 TGTCATCAACGTTGAAGAGTCA 57.947 40.909 32.69 24.06 41.13 3.41
2775 2954 4.349636 TGTTAAGAGGGGTTCAAGATGTCA 59.650 41.667 0.00 0.00 0.00 3.58
2819 2999 4.264614 GCTGAACTCAATGCAAAATGATCG 59.735 41.667 0.00 0.00 0.00 3.69
2848 3030 7.151976 GGCACAAATTAACAACAATAGGAACT 58.848 34.615 0.00 0.00 46.37 3.01
2947 3129 5.433526 AGCACTCCTTACAAGTTACAACAA 58.566 37.500 0.00 0.00 0.00 2.83
3085 3267 7.550551 TGCTCAGTCATCTCTTATTGGTTTTAG 59.449 37.037 0.00 0.00 0.00 1.85
3115 3297 6.761714 CAGATTATAACTGTGTTCAGGGGTAC 59.238 42.308 0.00 0.00 45.14 3.34
3159 3345 2.845363 TGAGAAAGATCTGCACTGCA 57.155 45.000 3.11 3.11 35.54 4.41
3284 3470 8.552506 ACCTTTTCGGAGCAAATATGCATGAC 62.553 42.308 10.16 0.00 45.47 3.06
3294 3480 1.478510 TGCAAACCTTTTCGGAGCAAA 59.521 42.857 0.00 0.00 36.32 3.68
3311 3497 2.009051 CAAGAATACATCTGCCGTGCA 58.991 47.619 0.00 0.00 38.79 4.57
3332 3518 4.558860 GCTACAATTGCCGAATCAAAGAAC 59.441 41.667 5.05 0.00 0.00 3.01
3352 3538 8.447833 CACTTGGTAATTAATTCGAAGTTGCTA 58.552 33.333 2.37 0.00 0.00 3.49
3354 3540 7.060633 CACACTTGGTAATTAATTCGAAGTTGC 59.939 37.037 2.37 0.00 0.00 4.17
3372 3558 2.848858 GCCAGCACCACACACTTGG 61.849 63.158 0.00 0.00 43.04 3.61
3389 3575 4.093556 GCAGAAACTGAGGTGTAACTATGC 59.906 45.833 2.81 0.00 32.39 3.14
3471 3658 2.687935 ACAATATGCCCGTGGTGAAATC 59.312 45.455 0.00 0.00 0.00 2.17
3481 3668 5.499139 ACAGTAAATCAACAATATGCCCG 57.501 39.130 0.00 0.00 0.00 6.13
3715 3902 5.073144 TCAAGACATCTTTAGGTCTGGGTTT 59.927 40.000 0.00 0.00 45.65 3.27
3722 3909 4.468153 AGGAGGTCAAGACATCTTTAGGTC 59.532 45.833 13.65 0.00 41.42 3.85
3864 4052 3.625764 TGAACCTGACAAGTTACAAGCAC 59.374 43.478 0.00 0.00 0.00 4.40
3955 4143 3.631686 CCCGAATGCCAACATTTCTATCA 59.368 43.478 0.00 0.00 46.59 2.15
4253 5211 8.601845 ACTTTTCTTTGCCAAATTTATGTACC 57.398 30.769 0.00 0.00 0.00 3.34
4286 5244 5.251601 TCCCGTTCTTTTTGGTAAAACAG 57.748 39.130 0.00 0.00 0.00 3.16
4376 5334 5.506708 AGCAGACTTATAATCGGGGTTTTT 58.493 37.500 0.00 0.00 0.00 1.94
4378 5336 4.772886 AGCAGACTTATAATCGGGGTTT 57.227 40.909 0.00 0.00 0.00 3.27
4379 5337 4.772886 AAGCAGACTTATAATCGGGGTT 57.227 40.909 0.00 0.00 33.13 4.11
4380 5338 5.145564 TCTAAGCAGACTTATAATCGGGGT 58.854 41.667 0.00 0.00 37.73 4.95
4381 5339 5.723672 TCTAAGCAGACTTATAATCGGGG 57.276 43.478 0.00 0.00 37.73 5.73
4382 5340 8.608844 AAATTCTAAGCAGACTTATAATCGGG 57.391 34.615 0.00 0.00 35.34 5.14
4532 5491 5.947228 TTATGTTCAAAAGACAGAGGCTG 57.053 39.130 0.00 0.00 37.52 4.85
4609 5568 8.894768 CCTTTAGGGATAAATAGTCACAGAAG 57.105 38.462 0.00 0.00 37.23 2.85
4682 5641 8.484214 AGCAATCTATGTAAAGAGGTGATCTA 57.516 34.615 0.00 0.00 37.23 1.98
4693 5652 8.786898 GCAGAATAATGGAGCAATCTATGTAAA 58.213 33.333 0.00 0.00 0.00 2.01
4694 5653 8.159447 AGCAGAATAATGGAGCAATCTATGTAA 58.841 33.333 0.00 0.00 0.00 2.41
4695 5654 7.683578 AGCAGAATAATGGAGCAATCTATGTA 58.316 34.615 0.00 0.00 0.00 2.29
4696 5655 6.540995 AGCAGAATAATGGAGCAATCTATGT 58.459 36.000 0.00 0.00 0.00 2.29
4926 5885 2.431454 TGTCATACCGCTGCATTCAAA 58.569 42.857 0.00 0.00 0.00 2.69
5026 5985 4.702612 TCTTGCTTGTTCTTTTGGTACACA 59.297 37.500 0.00 0.00 39.29 3.72
5058 6017 4.876107 TCTAAAGATGCGAATTTCAGGTCC 59.124 41.667 0.00 0.00 0.00 4.46
5130 6093 9.326413 CCCTCTGTATCAAAATATAAGACGTTT 57.674 33.333 0.00 0.00 0.00 3.60
5287 6250 8.530311 ACAAAATTTCATACTGAATGCCATACA 58.470 29.630 0.00 0.00 36.11 2.29
5378 6341 5.536538 TCCAGTCTCGCATAGATAAGATGTT 59.463 40.000 0.00 0.00 36.36 2.71
5386 6349 2.388735 TGGTTCCAGTCTCGCATAGAT 58.611 47.619 0.00 0.00 36.36 1.98
5387 6350 1.847328 TGGTTCCAGTCTCGCATAGA 58.153 50.000 0.00 0.00 0.00 1.98
5388 6351 2.898729 ATGGTTCCAGTCTCGCATAG 57.101 50.000 0.00 0.00 0.00 2.23
5390 6353 2.026822 AGAAATGGTTCCAGTCTCGCAT 60.027 45.455 0.00 0.00 33.92 4.73
5391 6354 1.347707 AGAAATGGTTCCAGTCTCGCA 59.652 47.619 0.00 0.00 33.92 5.10
5392 6355 2.100605 AGAAATGGTTCCAGTCTCGC 57.899 50.000 0.00 0.00 33.92 5.03
5393 6356 3.929610 GAGAAGAAATGGTTCCAGTCTCG 59.070 47.826 7.86 0.00 33.92 4.04
5394 6357 4.899502 TGAGAAGAAATGGTTCCAGTCTC 58.100 43.478 7.86 9.03 37.28 3.36
5395 6358 4.982241 TGAGAAGAAATGGTTCCAGTCT 57.018 40.909 0.00 0.42 33.92 3.24
5396 6359 4.331168 CGATGAGAAGAAATGGTTCCAGTC 59.669 45.833 0.00 0.00 33.92 3.51
5398 6361 4.256920 ACGATGAGAAGAAATGGTTCCAG 58.743 43.478 0.00 0.00 33.92 3.86
5424 6388 2.024369 AGGCCCCTGACGGAAAAATATT 60.024 45.455 0.00 0.00 0.00 1.28
5467 6431 5.149273 CAACAGACAACACATATTGCAGTC 58.851 41.667 0.00 0.00 34.19 3.51
5546 6510 2.035066 AGCTGATTGACCAAAACTGTGC 59.965 45.455 0.00 0.00 0.00 4.57
5551 6515 4.836125 TCTGAAGCTGATTGACCAAAAC 57.164 40.909 0.00 0.00 0.00 2.43
5649 6614 4.568152 AGCTGCTCAACACGTTTAAAAT 57.432 36.364 0.00 0.00 0.00 1.82
5684 6649 8.645814 TCACCTCAACTCTTATTAGTACAGAA 57.354 34.615 0.00 0.00 0.00 3.02
5719 6684 0.036388 ACCGTCCATTTGCTCATCGT 60.036 50.000 0.00 0.00 0.00 3.73
5772 6737 0.024364 GCAAAACAAACACGTTGCCG 59.976 50.000 0.00 0.00 41.31 5.69
5785 6750 8.810652 TGTAATAGACCTGATTTTTGCAAAAC 57.189 30.769 23.79 14.01 0.00 2.43
5813 6782 3.531538 TGAGGTGCTTTGTATCGGAATC 58.468 45.455 0.00 0.00 0.00 2.52
5814 6783 3.627395 TGAGGTGCTTTGTATCGGAAT 57.373 42.857 0.00 0.00 0.00 3.01
5868 6837 9.336171 GGTGCTTTCTATCAGAATCTTTCTAAT 57.664 33.333 0.00 0.00 38.11 1.73
5869 6838 8.543774 AGGTGCTTTCTATCAGAATCTTTCTAA 58.456 33.333 0.00 0.00 38.11 2.10
5870 6839 8.083828 AGGTGCTTTCTATCAGAATCTTTCTA 57.916 34.615 0.00 0.00 38.11 2.10
5871 6840 6.956497 AGGTGCTTTCTATCAGAATCTTTCT 58.044 36.000 0.00 0.00 41.70 2.52
5872 6841 6.820656 TGAGGTGCTTTCTATCAGAATCTTTC 59.179 38.462 0.00 0.00 33.67 2.62
5873 6842 6.715280 TGAGGTGCTTTCTATCAGAATCTTT 58.285 36.000 0.00 0.00 33.67 2.52
5874 6843 6.305272 TGAGGTGCTTTCTATCAGAATCTT 57.695 37.500 0.00 0.00 33.67 2.40
5875 6844 5.946942 TGAGGTGCTTTCTATCAGAATCT 57.053 39.130 0.00 0.00 33.67 2.40
5876 6845 6.372659 TGTTTGAGGTGCTTTCTATCAGAATC 59.627 38.462 0.00 0.00 33.67 2.52
5877 6846 6.240894 TGTTTGAGGTGCTTTCTATCAGAAT 58.759 36.000 0.00 0.00 33.67 2.40
5878 6847 5.620206 TGTTTGAGGTGCTTTCTATCAGAA 58.380 37.500 0.00 0.00 31.28 3.02
5879 6848 5.227569 TGTTTGAGGTGCTTTCTATCAGA 57.772 39.130 0.00 0.00 0.00 3.27
5880 6849 7.615582 TTATGTTTGAGGTGCTTTCTATCAG 57.384 36.000 0.00 0.00 0.00 2.90
5881 6850 9.679661 TTATTATGTTTGAGGTGCTTTCTATCA 57.320 29.630 0.00 0.00 0.00 2.15
5885 6854 9.643693 CATTTTATTATGTTTGAGGTGCTTTCT 57.356 29.630 0.00 0.00 0.00 2.52
5886 6855 9.638239 TCATTTTATTATGTTTGAGGTGCTTTC 57.362 29.630 0.00 0.00 0.00 2.62
5887 6856 9.423061 GTCATTTTATTATGTTTGAGGTGCTTT 57.577 29.630 0.00 0.00 0.00 3.51
5888 6857 8.584157 TGTCATTTTATTATGTTTGAGGTGCTT 58.416 29.630 0.00 0.00 0.00 3.91
5889 6858 8.121305 TGTCATTTTATTATGTTTGAGGTGCT 57.879 30.769 0.00 0.00 0.00 4.40
5890 6859 8.931385 ATGTCATTTTATTATGTTTGAGGTGC 57.069 30.769 0.00 0.00 0.00 5.01
5891 6860 9.225201 CGATGTCATTTTATTATGTTTGAGGTG 57.775 33.333 0.00 0.00 0.00 4.00
5892 6861 9.173021 TCGATGTCATTTTATTATGTTTGAGGT 57.827 29.630 0.00 0.00 0.00 3.85
5893 6862 9.655769 CTCGATGTCATTTTATTATGTTTGAGG 57.344 33.333 0.00 0.00 0.00 3.86
5894 6863 9.655769 CCTCGATGTCATTTTATTATGTTTGAG 57.344 33.333 0.00 0.00 0.00 3.02
5895 6864 8.620416 CCCTCGATGTCATTTTATTATGTTTGA 58.380 33.333 0.00 0.00 0.00 2.69
5896 6865 8.405531 ACCCTCGATGTCATTTTATTATGTTTG 58.594 33.333 0.00 0.00 0.00 2.93
5897 6866 8.519799 ACCCTCGATGTCATTTTATTATGTTT 57.480 30.769 0.00 0.00 0.00 2.83
5898 6867 8.519799 AACCCTCGATGTCATTTTATTATGTT 57.480 30.769 0.00 0.00 0.00 2.71
5899 6868 9.793259 ATAACCCTCGATGTCATTTTATTATGT 57.207 29.630 0.00 0.00 0.00 2.29
5901 6870 9.231297 CCATAACCCTCGATGTCATTTTATTAT 57.769 33.333 0.00 0.00 0.00 1.28
5902 6871 8.433599 TCCATAACCCTCGATGTCATTTTATTA 58.566 33.333 0.00 0.00 0.00 0.98
5903 6872 7.228706 GTCCATAACCCTCGATGTCATTTTATT 59.771 37.037 0.00 0.00 0.00 1.40
5904 6873 6.710744 GTCCATAACCCTCGATGTCATTTTAT 59.289 38.462 0.00 0.00 0.00 1.40
5905 6874 6.053005 GTCCATAACCCTCGATGTCATTTTA 58.947 40.000 0.00 0.00 0.00 1.52
5906 6875 4.881850 GTCCATAACCCTCGATGTCATTTT 59.118 41.667 0.00 0.00 0.00 1.82
5907 6876 4.451900 GTCCATAACCCTCGATGTCATTT 58.548 43.478 0.00 0.00 0.00 2.32
5908 6877 3.181454 GGTCCATAACCCTCGATGTCATT 60.181 47.826 0.00 0.00 42.85 2.57
5909 6878 2.368875 GGTCCATAACCCTCGATGTCAT 59.631 50.000 0.00 0.00 42.85 3.06
5910 6879 1.760613 GGTCCATAACCCTCGATGTCA 59.239 52.381 0.00 0.00 42.85 3.58
5911 6880 2.528041 GGTCCATAACCCTCGATGTC 57.472 55.000 0.00 0.00 42.85 3.06
5921 6890 3.340034 TGGTCGTTTGATGGTCCATAAC 58.660 45.455 3.72 5.91 0.00 1.89
5922 6891 3.704800 TGGTCGTTTGATGGTCCATAA 57.295 42.857 3.72 0.00 0.00 1.90
5923 6892 3.924114 ATGGTCGTTTGATGGTCCATA 57.076 42.857 3.72 0.00 34.49 2.74
5924 6893 2.806945 ATGGTCGTTTGATGGTCCAT 57.193 45.000 3.26 3.26 0.00 3.41
5925 6894 2.577606 AATGGTCGTTTGATGGTCCA 57.422 45.000 0.00 0.00 0.00 4.02
5926 6895 3.181514 CGTTAATGGTCGTTTGATGGTCC 60.182 47.826 0.00 0.00 0.00 4.46
5927 6896 3.726782 GCGTTAATGGTCGTTTGATGGTC 60.727 47.826 0.00 0.00 0.00 4.02
5928 6897 2.160813 GCGTTAATGGTCGTTTGATGGT 59.839 45.455 0.00 0.00 0.00 3.55
5929 6898 2.477189 GGCGTTAATGGTCGTTTGATGG 60.477 50.000 0.00 0.00 0.00 3.51
5930 6899 2.160615 TGGCGTTAATGGTCGTTTGATG 59.839 45.455 0.00 0.00 0.00 3.07
5931 6900 2.160813 GTGGCGTTAATGGTCGTTTGAT 59.839 45.455 0.00 0.00 0.00 2.57
5932 6901 1.532007 GTGGCGTTAATGGTCGTTTGA 59.468 47.619 0.00 0.00 0.00 2.69
5933 6902 1.533731 AGTGGCGTTAATGGTCGTTTG 59.466 47.619 0.00 0.00 0.00 2.93
5934 6903 1.886886 AGTGGCGTTAATGGTCGTTT 58.113 45.000 0.00 0.00 0.00 3.60
5935 6904 2.747396 TAGTGGCGTTAATGGTCGTT 57.253 45.000 0.00 0.00 0.00 3.85
5936 6905 2.747396 TTAGTGGCGTTAATGGTCGT 57.253 45.000 0.00 0.00 0.00 4.34
5937 6906 4.609691 ATTTTAGTGGCGTTAATGGTCG 57.390 40.909 0.00 0.00 0.00 4.79
5938 6907 6.748658 GGTTTATTTTAGTGGCGTTAATGGTC 59.251 38.462 0.00 0.00 0.00 4.02
5939 6908 6.623331 CGGTTTATTTTAGTGGCGTTAATGGT 60.623 38.462 0.00 0.00 0.00 3.55
5940 6909 5.740099 CGGTTTATTTTAGTGGCGTTAATGG 59.260 40.000 0.00 0.00 0.00 3.16
5941 6910 5.228427 GCGGTTTATTTTAGTGGCGTTAATG 59.772 40.000 0.00 0.00 0.00 1.90
5942 6911 5.334319 GCGGTTTATTTTAGTGGCGTTAAT 58.666 37.500 0.00 0.00 0.00 1.40
5943 6912 4.379290 GGCGGTTTATTTTAGTGGCGTTAA 60.379 41.667 0.00 0.00 0.00 2.01
5944 6913 3.126686 GGCGGTTTATTTTAGTGGCGTTA 59.873 43.478 0.00 0.00 0.00 3.18
5945 6914 2.095110 GGCGGTTTATTTTAGTGGCGTT 60.095 45.455 0.00 0.00 0.00 4.84
5946 6915 1.469703 GGCGGTTTATTTTAGTGGCGT 59.530 47.619 0.00 0.00 0.00 5.68
5947 6916 1.530236 CGGCGGTTTATTTTAGTGGCG 60.530 52.381 0.00 0.00 37.56 5.69
5948 6917 1.738908 TCGGCGGTTTATTTTAGTGGC 59.261 47.619 7.21 0.00 0.00 5.01
5949 6918 2.743126 TGTCGGCGGTTTATTTTAGTGG 59.257 45.455 7.21 0.00 0.00 4.00
5950 6919 3.722665 CGTGTCGGCGGTTTATTTTAGTG 60.723 47.826 7.21 0.00 0.00 2.74
5951 6920 2.412770 CGTGTCGGCGGTTTATTTTAGT 59.587 45.455 7.21 0.00 0.00 2.24
5952 6921 2.785342 GCGTGTCGGCGGTTTATTTTAG 60.785 50.000 7.21 0.00 0.00 1.85
5953 6922 1.128321 GCGTGTCGGCGGTTTATTTTA 59.872 47.619 7.21 0.00 0.00 1.52
5954 6923 0.110101 GCGTGTCGGCGGTTTATTTT 60.110 50.000 7.21 0.00 0.00 1.82
5955 6924 1.498611 GCGTGTCGGCGGTTTATTT 59.501 52.632 7.21 0.00 0.00 1.40
5956 6925 2.392974 GGCGTGTCGGCGGTTTATT 61.393 57.895 7.21 0.00 43.33 1.40
5957 6926 2.816520 GGCGTGTCGGCGGTTTAT 60.817 61.111 7.21 0.00 43.33 1.40
5967 6936 1.207593 GCAATGACAGTGGCGTGTC 59.792 57.895 11.76 11.76 46.08 3.67
5968 6937 2.260869 GGCAATGACAGTGGCGTGT 61.261 57.895 13.86 0.00 0.00 4.49
5969 6938 2.562912 GGCAATGACAGTGGCGTG 59.437 61.111 13.86 0.00 0.00 5.34
5970 6939 2.672996 GGGCAATGACAGTGGCGT 60.673 61.111 21.08 0.00 42.24 5.68
5971 6940 3.443045 GGGGCAATGACAGTGGCG 61.443 66.667 21.08 0.00 42.24 5.69
5972 6941 1.259840 ATTGGGGCAATGACAGTGGC 61.260 55.000 19.97 19.97 40.67 5.01
5973 6942 2.980541 ATTGGGGCAATGACAGTGG 58.019 52.632 4.88 0.00 32.39 4.00
5981 6950 1.832998 GTGAACATCCATTGGGGCAAT 59.167 47.619 2.09 0.00 34.04 3.56
5982 6951 1.265236 GTGAACATCCATTGGGGCAA 58.735 50.000 2.09 0.00 36.21 4.52
5983 6952 0.964860 CGTGAACATCCATTGGGGCA 60.965 55.000 2.09 0.00 36.21 5.36
5984 6953 1.666209 CCGTGAACATCCATTGGGGC 61.666 60.000 2.09 0.00 36.21 5.80
5985 6954 0.034574 TCCGTGAACATCCATTGGGG 60.035 55.000 2.09 0.00 38.37 4.96
5986 6955 1.065491 TCTCCGTGAACATCCATTGGG 60.065 52.381 2.09 0.00 0.00 4.12
5987 6956 2.283298 CTCTCCGTGAACATCCATTGG 58.717 52.381 0.00 0.00 0.00 3.16
5988 6957 1.667724 GCTCTCCGTGAACATCCATTG 59.332 52.381 0.00 0.00 0.00 2.82
5989 6958 1.556911 AGCTCTCCGTGAACATCCATT 59.443 47.619 0.00 0.00 0.00 3.16
5990 6959 1.134580 CAGCTCTCCGTGAACATCCAT 60.135 52.381 0.00 0.00 0.00 3.41
5991 6960 0.247460 CAGCTCTCCGTGAACATCCA 59.753 55.000 0.00 0.00 0.00 3.41
5992 6961 0.532573 TCAGCTCTCCGTGAACATCC 59.467 55.000 0.00 0.00 0.00 3.51
5993 6962 1.634702 GTCAGCTCTCCGTGAACATC 58.365 55.000 0.00 0.00 0.00 3.06
5994 6963 0.247736 GGTCAGCTCTCCGTGAACAT 59.752 55.000 0.00 0.00 30.20 2.71
5995 6964 1.112916 TGGTCAGCTCTCCGTGAACA 61.113 55.000 0.00 0.00 38.08 3.18
5996 6965 0.033504 TTGGTCAGCTCTCCGTGAAC 59.966 55.000 0.00 0.00 0.00 3.18
5997 6966 0.976641 ATTGGTCAGCTCTCCGTGAA 59.023 50.000 0.00 0.00 0.00 3.18
5998 6967 1.476891 GTATTGGTCAGCTCTCCGTGA 59.523 52.381 0.00 0.00 0.00 4.35
5999 6968 1.204704 TGTATTGGTCAGCTCTCCGTG 59.795 52.381 0.00 0.00 0.00 4.94
6000 6969 1.557099 TGTATTGGTCAGCTCTCCGT 58.443 50.000 0.00 0.00 0.00 4.69
6001 6970 2.271800 GTTGTATTGGTCAGCTCTCCG 58.728 52.381 0.00 0.00 0.00 4.63
6002 6971 3.334583 TGTTGTATTGGTCAGCTCTCC 57.665 47.619 0.00 0.00 0.00 3.71
6003 6972 4.437930 GCATTGTTGTATTGGTCAGCTCTC 60.438 45.833 0.00 0.00 0.00 3.20
6004 6973 3.441572 GCATTGTTGTATTGGTCAGCTCT 59.558 43.478 0.00 0.00 0.00 4.09
6005 6974 3.428045 GGCATTGTTGTATTGGTCAGCTC 60.428 47.826 0.00 0.00 0.00 4.09
6006 6975 2.493278 GGCATTGTTGTATTGGTCAGCT 59.507 45.455 0.00 0.00 0.00 4.24
6007 6976 2.731968 CGGCATTGTTGTATTGGTCAGC 60.732 50.000 0.00 0.00 0.00 4.26
6008 6977 2.159393 CCGGCATTGTTGTATTGGTCAG 60.159 50.000 0.00 0.00 0.00 3.51
6009 6978 1.815613 CCGGCATTGTTGTATTGGTCA 59.184 47.619 0.00 0.00 0.00 4.02
6010 6979 1.469079 GCCGGCATTGTTGTATTGGTC 60.469 52.381 24.80 0.00 0.00 4.02
6011 6980 0.530288 GCCGGCATTGTTGTATTGGT 59.470 50.000 24.80 0.00 0.00 3.67
6012 6981 0.529833 TGCCGGCATTGTTGTATTGG 59.470 50.000 29.03 0.00 0.00 3.16
6013 6982 2.462889 GATGCCGGCATTGTTGTATTG 58.537 47.619 40.56 0.00 36.70 1.90
6014 6983 1.408702 GGATGCCGGCATTGTTGTATT 59.591 47.619 40.56 18.73 36.70 1.89
6015 6984 1.032014 GGATGCCGGCATTGTTGTAT 58.968 50.000 40.56 19.56 36.70 2.29
6016 6985 0.322906 TGGATGCCGGCATTGTTGTA 60.323 50.000 40.56 20.74 36.70 2.41
6017 6986 0.971959 ATGGATGCCGGCATTGTTGT 60.972 50.000 40.56 21.24 36.70 3.32
6018 6987 0.528901 CATGGATGCCGGCATTGTTG 60.529 55.000 40.56 30.50 36.70 3.33
6019 6988 1.678598 CCATGGATGCCGGCATTGTT 61.679 55.000 40.56 25.05 36.70 2.83
6020 6989 2.129146 CCATGGATGCCGGCATTGT 61.129 57.895 40.56 26.23 36.70 2.71
6021 6990 1.829096 TCCATGGATGCCGGCATTG 60.829 57.895 40.56 32.55 36.70 2.82
6022 6991 1.829533 GTCCATGGATGCCGGCATT 60.830 57.895 40.56 24.33 36.70 3.56
6023 6992 2.203394 GTCCATGGATGCCGGCAT 60.203 61.111 41.16 41.16 39.69 4.40
6024 6993 2.778055 TTTGTCCATGGATGCCGGCA 62.778 55.000 34.80 34.80 0.00 5.69
6025 6994 1.603236 TTTTGTCCATGGATGCCGGC 61.603 55.000 22.73 22.73 0.00 6.13
6026 6995 1.113788 ATTTTGTCCATGGATGCCGG 58.886 50.000 19.62 0.00 0.00 6.13
6027 6996 2.931325 CAAATTTTGTCCATGGATGCCG 59.069 45.455 19.62 0.00 0.00 5.69
6028 6997 3.055240 TCCAAATTTTGTCCATGGATGCC 60.055 43.478 19.62 5.73 35.33 4.40
6029 6998 4.205065 TCCAAATTTTGTCCATGGATGC 57.795 40.909 19.62 6.56 35.33 3.91
6030 6999 7.690952 ATTTTCCAAATTTTGTCCATGGATG 57.309 32.000 19.62 10.03 39.74 3.51
6031 7000 9.452287 CTAATTTTCCAAATTTTGTCCATGGAT 57.548 29.630 19.62 0.00 39.74 3.41
6032 7001 8.435982 ACTAATTTTCCAAATTTTGTCCATGGA 58.564 29.630 11.44 11.44 38.36 3.41
6033 7002 8.620116 ACTAATTTTCCAAATTTTGTCCATGG 57.380 30.769 4.97 4.97 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.