Multiple sequence alignment - TraesCS1A01G155600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G155600 chr1A 100.000 1165 0 0 1 1165 274780651 274781815 0.000000e+00 2152.0
1 TraesCS1A01G155600 chr1A 100.000 1117 0 0 1619 2735 274782269 274783385 0.000000e+00 2063.0
2 TraesCS1A01G155600 chr1A 85.921 277 36 3 1 276 295936913 295937187 2.660000e-75 292.0
3 TraesCS1A01G155600 chr1D 94.955 892 43 1 1823 2712 215628319 215629210 0.000000e+00 1397.0
4 TraesCS1A01G155600 chr1D 93.871 620 22 4 559 1165 215619428 215620044 0.000000e+00 920.0
5 TraesCS1A01G155600 chr1D 94.634 205 5 2 1619 1823 215620128 215620326 2.040000e-81 313.0
6 TraesCS1A01G155600 chr1D 100.000 30 0 0 2027 2056 61488735 61488764 3.800000e-04 56.5
7 TraesCS1A01G155600 chr1B 91.776 535 19 6 1646 2163 308582942 308583468 0.000000e+00 721.0
8 TraesCS1A01G155600 chr1B 89.759 498 15 6 649 1110 308582091 308582588 3.010000e-169 604.0
9 TraesCS1A01G155600 chr1B 79.343 213 37 6 2495 2703 22434598 22434807 2.840000e-30 143.0
10 TraesCS1A01G155600 chr1B 78.873 213 38 6 2495 2703 22557276 22557485 1.320000e-28 137.0
11 TraesCS1A01G155600 chr1B 77.934 213 40 6 2495 2703 22494609 22494818 2.860000e-25 126.0
12 TraesCS1A01G155600 chr2A 82.643 628 95 10 2034 2656 186491424 186492042 6.660000e-151 544.0
13 TraesCS1A01G155600 chr2A 75.707 601 120 13 2107 2690 686792943 686793534 7.460000e-71 278.0
14 TraesCS1A01G155600 chr5A 79.191 692 114 23 2028 2706 585072394 585071720 1.150000e-123 453.0
15 TraesCS1A01G155600 chr5A 84.477 277 41 2 1 276 342323799 342323524 3.470000e-69 272.0
16 TraesCS1A01G155600 chr4A 86.397 272 35 2 7 277 296493022 296492752 2.060000e-76 296.0
17 TraesCS1A01G155600 chr6A 85.662 272 33 5 7 276 370589480 370589213 5.770000e-72 281.0
18 TraesCS1A01G155600 chr3B 75.157 636 136 18 2075 2703 46355107 46355727 2.070000e-71 279.0
19 TraesCS1A01G155600 chr3B 73.881 268 49 10 2222 2486 793284442 793284193 1.350000e-13 87.9
20 TraesCS1A01G155600 chr3B 73.507 268 50 10 2222 2486 793299414 793299165 6.280000e-12 82.4
21 TraesCS1A01G155600 chr7A 85.294 272 36 3 7 276 375004552 375004821 7.460000e-71 278.0
22 TraesCS1A01G155600 chr3D 85.401 274 32 7 7 276 334411339 334411070 7.460000e-71 278.0
23 TraesCS1A01G155600 chr3D 84.532 278 38 4 1 276 381244415 381244689 1.250000e-68 270.0
24 TraesCS1A01G155600 chr3A 84.892 278 36 5 1 276 616188037 616188310 2.680000e-70 276.0
25 TraesCS1A01G155600 chr3A 85.240 271 35 5 7 276 104564123 104564389 9.650000e-70 274.0
26 TraesCS1A01G155600 chr7B 74.527 687 116 33 2030 2707 440821091 440820455 7.570000e-61 244.0
27 TraesCS1A01G155600 chr5B 79.298 285 56 2 2429 2712 572347599 572347317 2.150000e-46 196.0
28 TraesCS1A01G155600 chr7D 75.676 333 75 5 2036 2363 351564243 351564574 7.840000e-36 161.0
29 TraesCS1A01G155600 chrUn 87.302 63 8 0 2650 2712 22922316 22922254 3.780000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G155600 chr1A 274780651 274783385 2734 False 2107.5 2152 100.0000 1 2735 2 chr1A.!!$F2 2734
1 TraesCS1A01G155600 chr1D 215628319 215629210 891 False 1397.0 1397 94.9550 1823 2712 1 chr1D.!!$F2 889
2 TraesCS1A01G155600 chr1D 215619428 215620326 898 False 616.5 920 94.2525 559 1823 2 chr1D.!!$F3 1264
3 TraesCS1A01G155600 chr1B 308582091 308583468 1377 False 662.5 721 90.7675 649 2163 2 chr1B.!!$F4 1514
4 TraesCS1A01G155600 chr2A 186491424 186492042 618 False 544.0 544 82.6430 2034 2656 1 chr2A.!!$F1 622
5 TraesCS1A01G155600 chr2A 686792943 686793534 591 False 278.0 278 75.7070 2107 2690 1 chr2A.!!$F2 583
6 TraesCS1A01G155600 chr5A 585071720 585072394 674 True 453.0 453 79.1910 2028 2706 1 chr5A.!!$R2 678
7 TraesCS1A01G155600 chr3B 46355107 46355727 620 False 279.0 279 75.1570 2075 2703 1 chr3B.!!$F1 628
8 TraesCS1A01G155600 chr7B 440820455 440821091 636 True 244.0 244 74.5270 2030 2707 1 chr7B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 535 0.035439 GGGCGTGGGAATCTCAAAGA 60.035 55.0 0.0 0.0 0.00 2.52 F
809 816 0.244994 GTCCGATCCATCCGATCCAG 59.755 60.0 0.0 0.0 44.07 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1681 1.067283 CACAGCACACAAAACACCCAA 60.067 47.619 0.0 0.0 0.00 4.12 R
2601 2684 1.194218 TCAGAGATGGCGATGTTCCA 58.806 50.000 0.0 0.0 38.09 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.508632 TCGCTAAGCACAAGAACACC 58.491 50.000 0.00 0.00 0.00 4.16
21 22 1.070134 TCGCTAAGCACAAGAACACCT 59.930 47.619 0.00 0.00 0.00 4.00
22 23 1.461127 CGCTAAGCACAAGAACACCTC 59.539 52.381 0.00 0.00 0.00 3.85
23 24 2.772287 GCTAAGCACAAGAACACCTCT 58.228 47.619 0.00 0.00 35.13 3.69
24 25 2.739379 GCTAAGCACAAGAACACCTCTC 59.261 50.000 0.00 0.00 31.02 3.20
25 26 2.262423 AAGCACAAGAACACCTCTCC 57.738 50.000 0.00 0.00 31.02 3.71
26 27 1.428869 AGCACAAGAACACCTCTCCT 58.571 50.000 0.00 0.00 31.02 3.69
27 28 1.346068 AGCACAAGAACACCTCTCCTC 59.654 52.381 0.00 0.00 31.02 3.71
28 29 1.070758 GCACAAGAACACCTCTCCTCA 59.929 52.381 0.00 0.00 31.02 3.86
29 30 2.869636 GCACAAGAACACCTCTCCTCAG 60.870 54.545 0.00 0.00 31.02 3.35
30 31 2.630098 CACAAGAACACCTCTCCTCAGA 59.370 50.000 0.00 0.00 31.02 3.27
31 32 3.070159 CACAAGAACACCTCTCCTCAGAA 59.930 47.826 0.00 0.00 31.02 3.02
32 33 3.323403 ACAAGAACACCTCTCCTCAGAAG 59.677 47.826 0.00 0.00 31.02 2.85
33 34 2.534990 AGAACACCTCTCCTCAGAAGG 58.465 52.381 0.00 0.00 44.89 3.46
34 35 0.980423 AACACCTCTCCTCAGAAGGC 59.020 55.000 0.00 0.00 43.02 4.35
35 36 0.116143 ACACCTCTCCTCAGAAGGCT 59.884 55.000 0.00 0.00 43.02 4.58
36 37 1.359474 ACACCTCTCCTCAGAAGGCTA 59.641 52.381 0.00 0.00 43.02 3.93
37 38 2.023501 ACACCTCTCCTCAGAAGGCTAT 60.024 50.000 0.00 0.00 43.02 2.97
38 39 3.037549 CACCTCTCCTCAGAAGGCTATT 58.962 50.000 0.00 0.00 43.02 1.73
39 40 3.069443 CACCTCTCCTCAGAAGGCTATTC 59.931 52.174 0.00 0.00 43.02 1.75
40 41 3.052186 ACCTCTCCTCAGAAGGCTATTCT 60.052 47.826 0.00 0.00 43.02 2.40
41 42 3.966665 CCTCTCCTCAGAAGGCTATTCTT 59.033 47.826 2.47 0.00 43.02 2.52
42 43 4.039124 CCTCTCCTCAGAAGGCTATTCTTC 59.961 50.000 2.47 0.00 43.02 2.87
54 55 8.950208 GAAGGCTATTCTTCTGTTATAACTGT 57.050 34.615 16.33 3.09 39.84 3.55
55 56 9.384764 GAAGGCTATTCTTCTGTTATAACTGTT 57.615 33.333 16.33 0.00 39.84 3.16
56 57 8.950208 AGGCTATTCTTCTGTTATAACTGTTC 57.050 34.615 16.33 0.00 0.00 3.18
57 58 8.540388 AGGCTATTCTTCTGTTATAACTGTTCA 58.460 33.333 16.33 4.88 0.00 3.18
58 59 9.331282 GGCTATTCTTCTGTTATAACTGTTCAT 57.669 33.333 16.33 9.59 0.00 2.57
65 66 9.334693 CTTCTGTTATAACTGTTCATTTTCAGC 57.665 33.333 16.33 0.00 35.37 4.26
66 67 8.621532 TCTGTTATAACTGTTCATTTTCAGCT 57.378 30.769 16.33 0.00 35.37 4.24
67 68 8.721478 TCTGTTATAACTGTTCATTTTCAGCTC 58.279 33.333 16.33 0.00 35.37 4.09
68 69 8.389779 TGTTATAACTGTTCATTTTCAGCTCA 57.610 30.769 16.33 0.00 35.37 4.26
69 70 8.845227 TGTTATAACTGTTCATTTTCAGCTCAA 58.155 29.630 16.33 0.00 35.37 3.02
70 71 9.334693 GTTATAACTGTTCATTTTCAGCTCAAG 57.665 33.333 8.41 0.00 35.37 3.02
71 72 7.750229 ATAACTGTTCATTTTCAGCTCAAGA 57.250 32.000 0.00 0.00 35.37 3.02
72 73 5.686159 ACTGTTCATTTTCAGCTCAAGAG 57.314 39.130 0.00 0.00 35.37 2.85
73 74 4.518211 ACTGTTCATTTTCAGCTCAAGAGG 59.482 41.667 0.00 0.00 35.37 3.69
74 75 4.464008 TGTTCATTTTCAGCTCAAGAGGT 58.536 39.130 0.00 0.00 40.20 3.85
75 76 5.620206 TGTTCATTTTCAGCTCAAGAGGTA 58.380 37.500 0.95 0.00 37.39 3.08
76 77 6.061441 TGTTCATTTTCAGCTCAAGAGGTAA 58.939 36.000 0.95 0.00 37.39 2.85
77 78 6.716628 TGTTCATTTTCAGCTCAAGAGGTAAT 59.283 34.615 0.95 0.00 37.39 1.89
78 79 6.992063 TCATTTTCAGCTCAAGAGGTAATC 57.008 37.500 0.95 0.00 37.39 1.75
79 80 5.882557 TCATTTTCAGCTCAAGAGGTAATCC 59.117 40.000 0.95 0.00 37.39 3.01
80 81 4.908601 TTTCAGCTCAAGAGGTAATCCA 57.091 40.909 0.95 0.00 37.39 3.41
81 82 3.895232 TCAGCTCAAGAGGTAATCCAC 57.105 47.619 0.95 0.00 37.39 4.02
92 93 2.561478 GTAATCCACCACACCACACT 57.439 50.000 0.00 0.00 0.00 3.55
93 94 2.151202 GTAATCCACCACACCACACTG 58.849 52.381 0.00 0.00 0.00 3.66
94 95 0.843309 AATCCACCACACCACACTGA 59.157 50.000 0.00 0.00 0.00 3.41
95 96 0.843309 ATCCACCACACCACACTGAA 59.157 50.000 0.00 0.00 0.00 3.02
96 97 0.180171 TCCACCACACCACACTGAAG 59.820 55.000 0.00 0.00 0.00 3.02
97 98 0.107214 CCACCACACCACACTGAAGT 60.107 55.000 0.00 0.00 0.00 3.01
98 99 1.140052 CCACCACACCACACTGAAGTA 59.860 52.381 0.00 0.00 0.00 2.24
99 100 2.483876 CACCACACCACACTGAAGTAG 58.516 52.381 0.00 0.00 0.00 2.57
100 101 1.416401 ACCACACCACACTGAAGTAGG 59.584 52.381 0.83 0.83 0.00 3.18
101 102 1.270839 CCACACCACACTGAAGTAGGG 60.271 57.143 6.20 3.00 35.29 3.53
102 103 1.416401 CACACCACACTGAAGTAGGGT 59.584 52.381 6.20 3.53 46.36 4.34
103 104 2.631062 CACACCACACTGAAGTAGGGTA 59.369 50.000 5.24 0.00 42.52 3.69
104 105 3.260884 CACACCACACTGAAGTAGGGTAT 59.739 47.826 5.24 0.00 42.52 2.73
105 106 3.908103 ACACCACACTGAAGTAGGGTATT 59.092 43.478 5.24 0.00 42.52 1.89
106 107 5.046878 CACACCACACTGAAGTAGGGTATTA 60.047 44.000 5.24 0.00 42.52 0.98
107 108 5.046807 ACACCACACTGAAGTAGGGTATTAC 60.047 44.000 5.24 0.00 42.52 1.89
108 109 5.046878 CACCACACTGAAGTAGGGTATTACA 60.047 44.000 5.24 0.00 42.52 2.41
109 110 5.046807 ACCACACTGAAGTAGGGTATTACAC 60.047 44.000 3.98 0.00 42.52 2.90
110 111 5.416947 CACACTGAAGTAGGGTATTACACC 58.583 45.833 0.00 0.00 42.52 4.16
136 137 3.615224 GGTGACCCGAACCAGTATAAA 57.385 47.619 0.00 0.00 37.65 1.40
137 138 4.146745 GGTGACCCGAACCAGTATAAAT 57.853 45.455 0.00 0.00 37.65 1.40
138 139 4.124970 GGTGACCCGAACCAGTATAAATC 58.875 47.826 0.00 0.00 37.65 2.17
139 140 4.141779 GGTGACCCGAACCAGTATAAATCT 60.142 45.833 0.00 0.00 37.65 2.40
140 141 5.425630 GTGACCCGAACCAGTATAAATCTT 58.574 41.667 0.00 0.00 0.00 2.40
141 142 6.407299 GGTGACCCGAACCAGTATAAATCTTA 60.407 42.308 0.00 0.00 37.65 2.10
142 143 7.215085 GTGACCCGAACCAGTATAAATCTTAT 58.785 38.462 0.00 0.00 0.00 1.73
143 144 7.713942 GTGACCCGAACCAGTATAAATCTTATT 59.286 37.037 0.00 0.00 0.00 1.40
144 145 8.269317 TGACCCGAACCAGTATAAATCTTATTT 58.731 33.333 0.00 0.00 0.00 1.40
145 146 8.672823 ACCCGAACCAGTATAAATCTTATTTC 57.327 34.615 0.00 0.00 0.00 2.17
146 147 8.491958 ACCCGAACCAGTATAAATCTTATTTCT 58.508 33.333 0.00 0.00 0.00 2.52
147 148 8.989980 CCCGAACCAGTATAAATCTTATTTCTC 58.010 37.037 0.00 0.00 0.00 2.87
148 149 9.765795 CCGAACCAGTATAAATCTTATTTCTCT 57.234 33.333 0.00 0.00 0.00 3.10
159 160 7.617041 AATCTTATTTCTCTCGTTCTTTGGG 57.383 36.000 0.00 0.00 0.00 4.12
160 161 6.110411 TCTTATTTCTCTCGTTCTTTGGGT 57.890 37.500 0.00 0.00 0.00 4.51
161 162 6.531021 TCTTATTTCTCTCGTTCTTTGGGTT 58.469 36.000 0.00 0.00 0.00 4.11
162 163 6.649557 TCTTATTTCTCTCGTTCTTTGGGTTC 59.350 38.462 0.00 0.00 0.00 3.62
163 164 2.433868 TCTCTCGTTCTTTGGGTTCG 57.566 50.000 0.00 0.00 0.00 3.95
164 165 1.684983 TCTCTCGTTCTTTGGGTTCGT 59.315 47.619 0.00 0.00 0.00 3.85
165 166 2.059541 CTCTCGTTCTTTGGGTTCGTC 58.940 52.381 0.00 0.00 0.00 4.20
166 167 0.782384 CTCGTTCTTTGGGTTCGTCG 59.218 55.000 0.00 0.00 0.00 5.12
167 168 0.385029 TCGTTCTTTGGGTTCGTCGA 59.615 50.000 0.00 0.00 0.00 4.20
168 169 0.782384 CGTTCTTTGGGTTCGTCGAG 59.218 55.000 0.00 0.00 0.00 4.04
169 170 1.861971 GTTCTTTGGGTTCGTCGAGT 58.138 50.000 0.00 0.00 0.00 4.18
170 171 2.207590 GTTCTTTGGGTTCGTCGAGTT 58.792 47.619 0.00 0.00 0.00 3.01
171 172 3.383761 GTTCTTTGGGTTCGTCGAGTTA 58.616 45.455 0.00 0.00 0.00 2.24
172 173 3.293311 TCTTTGGGTTCGTCGAGTTAG 57.707 47.619 0.00 0.00 0.00 2.34
173 174 2.029649 TCTTTGGGTTCGTCGAGTTAGG 60.030 50.000 0.00 0.00 0.00 2.69
174 175 0.037975 TTGGGTTCGTCGAGTTAGGC 60.038 55.000 0.00 0.00 0.00 3.93
175 176 1.153686 GGGTTCGTCGAGTTAGGCC 60.154 63.158 0.00 0.00 0.00 5.19
176 177 1.515736 GGTTCGTCGAGTTAGGCCG 60.516 63.158 0.00 0.00 0.00 6.13
177 178 1.211190 GTTCGTCGAGTTAGGCCGT 59.789 57.895 0.00 0.00 0.00 5.68
178 179 1.069378 GTTCGTCGAGTTAGGCCGTG 61.069 60.000 0.00 0.00 0.00 4.94
179 180 1.236616 TTCGTCGAGTTAGGCCGTGA 61.237 55.000 0.00 0.00 0.00 4.35
180 181 1.226323 CGTCGAGTTAGGCCGTGAG 60.226 63.158 0.00 0.00 0.00 3.51
181 182 1.642037 CGTCGAGTTAGGCCGTGAGA 61.642 60.000 0.00 0.00 0.00 3.27
182 183 0.739561 GTCGAGTTAGGCCGTGAGAT 59.260 55.000 0.00 0.00 0.00 2.75
183 184 1.022735 TCGAGTTAGGCCGTGAGATC 58.977 55.000 0.00 0.00 0.00 2.75
184 185 0.738975 CGAGTTAGGCCGTGAGATCA 59.261 55.000 0.00 0.00 0.00 2.92
185 186 1.338337 CGAGTTAGGCCGTGAGATCAT 59.662 52.381 0.00 0.00 0.00 2.45
186 187 2.552743 CGAGTTAGGCCGTGAGATCATA 59.447 50.000 0.00 0.00 0.00 2.15
187 188 3.609644 CGAGTTAGGCCGTGAGATCATAC 60.610 52.174 0.00 0.00 0.00 2.39
188 189 2.293677 AGTTAGGCCGTGAGATCATACG 59.706 50.000 12.99 12.99 39.83 3.06
189 190 2.265589 TAGGCCGTGAGATCATACGA 57.734 50.000 19.33 1.30 42.54 3.43
190 191 1.399714 AGGCCGTGAGATCATACGAA 58.600 50.000 19.33 0.00 42.54 3.85
191 192 1.338337 AGGCCGTGAGATCATACGAAG 59.662 52.381 19.33 8.01 42.54 3.79
193 194 2.120232 GCCGTGAGATCATACGAAGTG 58.880 52.381 19.33 7.16 45.73 3.16
194 195 2.479730 GCCGTGAGATCATACGAAGTGT 60.480 50.000 19.33 0.00 45.73 3.55
201 202 3.036026 CATACGAAGTGTGCGAGCT 57.964 52.632 0.00 0.00 43.74 4.09
202 203 2.188837 CATACGAAGTGTGCGAGCTA 57.811 50.000 0.00 0.00 43.74 3.32
203 204 1.846782 CATACGAAGTGTGCGAGCTAC 59.153 52.381 0.00 0.00 43.74 3.58
204 205 0.876399 TACGAAGTGTGCGAGCTACA 59.124 50.000 0.00 0.00 45.73 2.74
205 206 0.387367 ACGAAGTGTGCGAGCTACAG 60.387 55.000 0.00 0.00 42.51 2.74
206 207 0.109735 CGAAGTGTGCGAGCTACAGA 60.110 55.000 0.00 0.00 0.00 3.41
207 208 1.623359 GAAGTGTGCGAGCTACAGAG 58.377 55.000 0.00 0.00 0.00 3.35
208 209 1.200252 GAAGTGTGCGAGCTACAGAGA 59.800 52.381 0.00 0.00 0.00 3.10
209 210 1.248486 AGTGTGCGAGCTACAGAGAA 58.752 50.000 0.00 0.00 0.00 2.87
210 211 1.201181 AGTGTGCGAGCTACAGAGAAG 59.799 52.381 0.00 0.00 0.00 2.85
211 212 0.528017 TGTGCGAGCTACAGAGAAGG 59.472 55.000 0.00 0.00 0.00 3.46
212 213 0.811915 GTGCGAGCTACAGAGAAGGA 59.188 55.000 0.00 0.00 0.00 3.36
213 214 1.098869 TGCGAGCTACAGAGAAGGAG 58.901 55.000 0.00 0.00 0.00 3.69
214 215 0.383949 GCGAGCTACAGAGAAGGAGG 59.616 60.000 0.00 0.00 0.00 4.30
215 216 1.028905 CGAGCTACAGAGAAGGAGGG 58.971 60.000 0.00 0.00 0.00 4.30
216 217 1.408961 CGAGCTACAGAGAAGGAGGGA 60.409 57.143 0.00 0.00 0.00 4.20
217 218 2.751479 CGAGCTACAGAGAAGGAGGGAT 60.751 54.545 0.00 0.00 0.00 3.85
218 219 2.890945 GAGCTACAGAGAAGGAGGGATC 59.109 54.545 0.00 0.00 0.00 3.36
219 220 2.517980 AGCTACAGAGAAGGAGGGATCT 59.482 50.000 0.00 0.00 0.00 2.75
220 221 3.052186 AGCTACAGAGAAGGAGGGATCTT 60.052 47.826 0.00 0.00 0.00 2.40
221 222 3.709141 GCTACAGAGAAGGAGGGATCTTT 59.291 47.826 0.00 0.00 0.00 2.52
222 223 4.442753 GCTACAGAGAAGGAGGGATCTTTG 60.443 50.000 0.00 0.00 34.80 2.77
223 224 3.525862 ACAGAGAAGGAGGGATCTTTGT 58.474 45.455 0.00 0.00 36.50 2.83
224 225 4.689062 ACAGAGAAGGAGGGATCTTTGTA 58.311 43.478 0.00 0.00 38.71 2.41
225 226 5.284582 ACAGAGAAGGAGGGATCTTTGTAT 58.715 41.667 0.00 0.00 38.71 2.29
226 227 5.130145 ACAGAGAAGGAGGGATCTTTGTATG 59.870 44.000 0.00 0.00 38.71 2.39
227 228 5.130145 CAGAGAAGGAGGGATCTTTGTATGT 59.870 44.000 0.00 0.00 0.00 2.29
228 229 6.325028 CAGAGAAGGAGGGATCTTTGTATGTA 59.675 42.308 0.00 0.00 0.00 2.29
229 230 6.325286 AGAGAAGGAGGGATCTTTGTATGTAC 59.675 42.308 0.00 0.00 0.00 2.90
230 231 5.367060 AGAAGGAGGGATCTTTGTATGTACC 59.633 44.000 0.00 0.00 0.00 3.34
231 232 3.974642 AGGAGGGATCTTTGTATGTACCC 59.025 47.826 0.00 0.00 36.47 3.69
232 233 3.714798 GGAGGGATCTTTGTATGTACCCA 59.285 47.826 0.00 0.00 38.42 4.51
233 234 4.202367 GGAGGGATCTTTGTATGTACCCAG 60.202 50.000 0.00 0.00 38.42 4.45
234 235 4.371681 AGGGATCTTTGTATGTACCCAGT 58.628 43.478 0.00 0.00 38.42 4.00
235 236 5.535029 AGGGATCTTTGTATGTACCCAGTA 58.465 41.667 0.00 0.00 38.42 2.74
236 237 6.151049 AGGGATCTTTGTATGTACCCAGTAT 58.849 40.000 0.00 0.00 38.42 2.12
237 238 6.619852 AGGGATCTTTGTATGTACCCAGTATT 59.380 38.462 0.00 0.00 38.42 1.89
238 239 6.935208 GGGATCTTTGTATGTACCCAGTATTC 59.065 42.308 0.00 0.00 36.27 1.75
239 240 6.645415 GGATCTTTGTATGTACCCAGTATTCG 59.355 42.308 0.00 0.00 0.00 3.34
240 241 6.778834 TCTTTGTATGTACCCAGTATTCGA 57.221 37.500 0.00 0.00 0.00 3.71
241 242 7.172868 TCTTTGTATGTACCCAGTATTCGAA 57.827 36.000 0.00 0.00 0.00 3.71
242 243 7.037438 TCTTTGTATGTACCCAGTATTCGAAC 58.963 38.462 0.00 0.00 0.00 3.95
243 244 6.534475 TTGTATGTACCCAGTATTCGAACT 57.466 37.500 0.00 0.00 0.00 3.01
244 245 6.534475 TGTATGTACCCAGTATTCGAACTT 57.466 37.500 0.00 0.00 0.00 2.66
245 246 6.567050 TGTATGTACCCAGTATTCGAACTTC 58.433 40.000 0.00 0.00 0.00 3.01
246 247 5.670792 ATGTACCCAGTATTCGAACTTCA 57.329 39.130 0.00 0.00 0.00 3.02
247 248 5.471556 TGTACCCAGTATTCGAACTTCAA 57.528 39.130 0.00 0.00 0.00 2.69
248 249 5.856156 TGTACCCAGTATTCGAACTTCAAA 58.144 37.500 0.00 0.00 0.00 2.69
249 250 5.929992 TGTACCCAGTATTCGAACTTCAAAG 59.070 40.000 0.00 0.00 0.00 2.77
250 251 4.324267 ACCCAGTATTCGAACTTCAAAGG 58.676 43.478 0.00 0.00 0.00 3.11
251 252 4.202430 ACCCAGTATTCGAACTTCAAAGGT 60.202 41.667 0.00 0.00 0.00 3.50
252 253 4.760204 CCCAGTATTCGAACTTCAAAGGTT 59.240 41.667 0.00 0.00 0.00 3.50
253 254 5.240844 CCCAGTATTCGAACTTCAAAGGTTT 59.759 40.000 0.00 0.00 0.00 3.27
254 255 6.238925 CCCAGTATTCGAACTTCAAAGGTTTT 60.239 38.462 0.00 0.00 0.00 2.43
255 256 6.636850 CCAGTATTCGAACTTCAAAGGTTTTG 59.363 38.462 0.00 0.00 0.00 2.44
256 257 6.142320 CAGTATTCGAACTTCAAAGGTTTTGC 59.858 38.462 0.00 0.00 0.00 3.68
257 258 3.430333 TCGAACTTCAAAGGTTTTGCC 57.570 42.857 0.00 0.00 37.58 4.52
258 259 2.116366 CGAACTTCAAAGGTTTTGCCG 58.884 47.619 0.00 0.00 43.70 5.69
259 260 2.223386 CGAACTTCAAAGGTTTTGCCGA 60.223 45.455 0.00 0.00 43.70 5.54
260 261 3.732471 CGAACTTCAAAGGTTTTGCCGAA 60.732 43.478 0.00 0.00 43.70 4.30
261 262 3.878160 ACTTCAAAGGTTTTGCCGAAA 57.122 38.095 0.00 0.00 43.70 3.46
262 263 3.517602 ACTTCAAAGGTTTTGCCGAAAC 58.482 40.909 0.00 0.00 45.53 2.78
272 273 3.562567 TTTGCCGAAACCTAAAATCCG 57.437 42.857 0.00 0.00 0.00 4.18
273 274 2.476126 TGCCGAAACCTAAAATCCGA 57.524 45.000 0.00 0.00 0.00 4.55
274 275 2.078392 TGCCGAAACCTAAAATCCGAC 58.922 47.619 0.00 0.00 0.00 4.79
275 276 2.078392 GCCGAAACCTAAAATCCGACA 58.922 47.619 0.00 0.00 0.00 4.35
276 277 2.095372 GCCGAAACCTAAAATCCGACAG 59.905 50.000 0.00 0.00 0.00 3.51
277 278 2.095372 CCGAAACCTAAAATCCGACAGC 59.905 50.000 0.00 0.00 0.00 4.40
278 279 3.000727 CGAAACCTAAAATCCGACAGCT 58.999 45.455 0.00 0.00 0.00 4.24
279 280 3.181520 CGAAACCTAAAATCCGACAGCTG 60.182 47.826 13.48 13.48 0.00 4.24
280 281 1.739067 ACCTAAAATCCGACAGCTGC 58.261 50.000 15.27 5.81 0.00 5.25
281 282 0.652592 CCTAAAATCCGACAGCTGCG 59.347 55.000 15.27 17.81 0.00 5.18
282 283 1.359848 CTAAAATCCGACAGCTGCGT 58.640 50.000 22.70 11.02 0.00 5.24
283 284 1.324736 CTAAAATCCGACAGCTGCGTC 59.675 52.381 22.70 11.07 0.00 5.19
290 291 3.626680 GACAGCTGCGTCGCACCTA 62.627 63.158 17.58 0.00 33.79 3.08
291 292 3.181967 CAGCTGCGTCGCACCTAC 61.182 66.667 17.58 6.26 33.79 3.18
292 293 3.680786 AGCTGCGTCGCACCTACA 61.681 61.111 17.58 0.00 33.79 2.74
293 294 2.736995 GCTGCGTCGCACCTACAA 60.737 61.111 17.58 0.00 33.79 2.41
294 295 3.011760 GCTGCGTCGCACCTACAAC 62.012 63.158 17.58 0.00 33.79 3.32
295 296 1.372997 CTGCGTCGCACCTACAACT 60.373 57.895 17.58 0.00 33.79 3.16
296 297 1.344942 CTGCGTCGCACCTACAACTC 61.345 60.000 17.58 0.00 33.79 3.01
297 298 2.092882 GCGTCGCACCTACAACTCC 61.093 63.158 13.44 0.00 0.00 3.85
298 299 1.800315 CGTCGCACCTACAACTCCG 60.800 63.158 0.00 0.00 0.00 4.63
299 300 2.092882 GTCGCACCTACAACTCCGC 61.093 63.158 0.00 0.00 0.00 5.54
300 301 2.813908 CGCACCTACAACTCCGCC 60.814 66.667 0.00 0.00 0.00 6.13
301 302 2.813908 GCACCTACAACTCCGCCG 60.814 66.667 0.00 0.00 0.00 6.46
302 303 2.654877 CACCTACAACTCCGCCGT 59.345 61.111 0.00 0.00 0.00 5.68
303 304 1.005394 CACCTACAACTCCGCCGTT 60.005 57.895 0.00 0.00 0.00 4.44
304 305 1.012486 CACCTACAACTCCGCCGTTC 61.012 60.000 0.00 0.00 0.00 3.95
305 306 1.290955 CCTACAACTCCGCCGTTCA 59.709 57.895 0.00 0.00 0.00 3.18
306 307 0.320073 CCTACAACTCCGCCGTTCAA 60.320 55.000 0.00 0.00 0.00 2.69
307 308 1.068474 CTACAACTCCGCCGTTCAAG 58.932 55.000 0.00 0.00 0.00 3.02
308 309 0.320073 TACAACTCCGCCGTTCAAGG 60.320 55.000 0.00 0.00 0.00 3.61
325 326 4.408821 GCAGGGCCGATCACCACA 62.409 66.667 0.00 0.00 0.00 4.17
326 327 2.436646 CAGGGCCGATCACCACAC 60.437 66.667 0.00 0.00 0.00 3.82
327 328 3.717294 AGGGCCGATCACCACACC 61.717 66.667 0.00 0.00 0.00 4.16
365 366 3.952675 CCGCTGCGCCGCATAAAT 61.953 61.111 23.66 0.00 38.13 1.40
366 367 2.024588 CGCTGCGCCGCATAAATT 59.975 55.556 23.66 0.00 38.13 1.82
367 368 2.287965 CGCTGCGCCGCATAAATTG 61.288 57.895 23.66 0.00 38.13 2.32
368 369 1.063972 GCTGCGCCGCATAAATTGA 59.936 52.632 19.50 0.00 38.13 2.57
369 370 0.525242 GCTGCGCCGCATAAATTGAA 60.525 50.000 19.50 0.00 38.13 2.69
370 371 1.865248 GCTGCGCCGCATAAATTGAAT 60.865 47.619 19.50 0.00 38.13 2.57
371 372 2.462889 CTGCGCCGCATAAATTGAATT 58.537 42.857 14.15 0.00 38.13 2.17
372 373 2.191802 TGCGCCGCATAAATTGAATTG 58.808 42.857 8.16 0.00 31.71 2.32
373 374 1.522258 GCGCCGCATAAATTGAATTGG 59.478 47.619 3.15 0.00 0.00 3.16
374 375 1.522258 CGCCGCATAAATTGAATTGGC 59.478 47.619 6.23 6.23 37.89 4.52
375 376 1.866601 GCCGCATAAATTGAATTGGCC 59.133 47.619 0.00 0.00 35.24 5.36
376 377 2.126467 CCGCATAAATTGAATTGGCCG 58.874 47.619 0.00 0.00 0.00 6.13
377 378 1.522258 CGCATAAATTGAATTGGCCGC 59.478 47.619 0.00 0.00 0.00 6.53
378 379 1.522258 GCATAAATTGAATTGGCCGCG 59.478 47.619 0.00 0.00 0.00 6.46
379 380 2.808244 CATAAATTGAATTGGCCGCGT 58.192 42.857 4.92 0.00 0.00 6.01
380 381 2.553079 TAAATTGAATTGGCCGCGTC 57.447 45.000 4.92 0.00 0.00 5.19
381 382 0.600557 AAATTGAATTGGCCGCGTCA 59.399 45.000 4.92 0.00 0.00 4.35
382 383 0.109319 AATTGAATTGGCCGCGTCAC 60.109 50.000 4.92 0.00 0.00 3.67
383 384 1.933115 ATTGAATTGGCCGCGTCACC 61.933 55.000 4.92 3.97 0.00 4.02
384 385 3.053291 GAATTGGCCGCGTCACCA 61.053 61.111 4.92 7.05 0.00 4.17
385 386 3.322706 GAATTGGCCGCGTCACCAC 62.323 63.158 11.77 0.00 35.10 4.16
386 387 4.634703 ATTGGCCGCGTCACCACA 62.635 61.111 11.77 5.20 35.10 4.17
391 392 3.266376 CCGCGTCACCACACGTTT 61.266 61.111 4.92 0.00 42.04 3.60
392 393 1.950130 CCGCGTCACCACACGTTTA 60.950 57.895 4.92 0.00 42.04 2.01
393 394 1.485514 CGCGTCACCACACGTTTAG 59.514 57.895 0.00 0.00 42.04 1.85
394 395 1.857364 GCGTCACCACACGTTTAGG 59.143 57.895 0.00 0.00 42.04 2.69
395 396 1.562575 GCGTCACCACACGTTTAGGG 61.563 60.000 0.00 0.00 42.04 3.53
396 397 0.947180 CGTCACCACACGTTTAGGGG 60.947 60.000 0.00 0.00 34.95 4.79
397 398 0.604511 GTCACCACACGTTTAGGGGG 60.605 60.000 0.00 0.00 0.00 5.40
398 399 1.969589 CACCACACGTTTAGGGGGC 60.970 63.158 0.00 0.00 0.00 5.80
399 400 2.360726 CCACACGTTTAGGGGGCC 60.361 66.667 0.00 0.00 0.00 5.80
400 401 2.432563 CACACGTTTAGGGGGCCA 59.567 61.111 4.39 0.00 0.00 5.36
401 402 1.001393 CACACGTTTAGGGGGCCAT 60.001 57.895 4.39 0.00 0.00 4.40
402 403 0.253610 CACACGTTTAGGGGGCCATA 59.746 55.000 4.39 0.00 0.00 2.74
403 404 0.253894 ACACGTTTAGGGGGCCATAC 59.746 55.000 4.39 0.00 0.00 2.39
404 405 0.544697 CACGTTTAGGGGGCCATACT 59.455 55.000 4.39 2.45 0.00 2.12
405 406 1.764134 CACGTTTAGGGGGCCATACTA 59.236 52.381 4.39 1.33 0.00 1.82
406 407 1.764723 ACGTTTAGGGGGCCATACTAC 59.235 52.381 4.39 0.00 0.00 2.73
407 408 1.071228 CGTTTAGGGGGCCATACTACC 59.929 57.143 4.39 0.00 0.00 3.18
408 409 1.422781 GTTTAGGGGGCCATACTACCC 59.577 57.143 4.39 4.38 46.24 3.69
414 415 2.410790 GGGCCATACTACCCCTAAGA 57.589 55.000 4.39 0.00 40.56 2.10
415 416 1.976404 GGGCCATACTACCCCTAAGAC 59.024 57.143 4.39 0.00 40.56 3.01
416 417 1.617357 GGCCATACTACCCCTAAGACG 59.383 57.143 0.00 0.00 0.00 4.18
417 418 2.314246 GCCATACTACCCCTAAGACGT 58.686 52.381 0.00 0.00 0.00 4.34
418 419 2.035576 GCCATACTACCCCTAAGACGTG 59.964 54.545 0.00 0.00 0.00 4.49
419 420 2.626743 CCATACTACCCCTAAGACGTGG 59.373 54.545 0.00 0.00 0.00 4.94
420 421 2.442236 TACTACCCCTAAGACGTGGG 57.558 55.000 6.36 6.36 45.34 4.61
421 422 0.706433 ACTACCCCTAAGACGTGGGA 59.294 55.000 14.48 0.00 46.15 4.37
422 423 1.341778 ACTACCCCTAAGACGTGGGAG 60.342 57.143 14.48 6.48 46.15 4.30
423 424 1.002069 TACCCCTAAGACGTGGGAGA 58.998 55.000 14.48 0.00 46.15 3.71
424 425 0.115745 ACCCCTAAGACGTGGGAGAA 59.884 55.000 14.48 0.00 46.15 2.87
425 426 1.272807 CCCCTAAGACGTGGGAGAAA 58.727 55.000 10.21 0.00 46.15 2.52
426 427 1.207329 CCCCTAAGACGTGGGAGAAAG 59.793 57.143 10.21 0.00 46.15 2.62
427 428 2.176889 CCCTAAGACGTGGGAGAAAGA 58.823 52.381 2.46 0.00 46.15 2.52
428 429 2.166664 CCCTAAGACGTGGGAGAAAGAG 59.833 54.545 2.46 0.00 46.15 2.85
429 430 3.090037 CCTAAGACGTGGGAGAAAGAGA 58.910 50.000 0.00 0.00 0.00 3.10
430 431 3.129638 CCTAAGACGTGGGAGAAAGAGAG 59.870 52.174 0.00 0.00 0.00 3.20
431 432 2.296073 AGACGTGGGAGAAAGAGAGT 57.704 50.000 0.00 0.00 0.00 3.24
432 433 2.164338 AGACGTGGGAGAAAGAGAGTC 58.836 52.381 0.00 0.00 0.00 3.36
433 434 1.202817 GACGTGGGAGAAAGAGAGTCC 59.797 57.143 0.00 0.00 0.00 3.85
437 438 1.107945 GGGAGAAAGAGAGTCCCTCG 58.892 60.000 0.00 0.00 45.90 4.63
438 439 0.458260 GGAGAAAGAGAGTCCCTCGC 59.542 60.000 0.00 0.00 46.49 5.03
439 440 0.458260 GAGAAAGAGAGTCCCTCGCC 59.542 60.000 0.00 0.00 46.49 5.54
440 441 0.251832 AGAAAGAGAGTCCCTCGCCA 60.252 55.000 0.00 0.00 46.49 5.69
441 442 0.108567 GAAAGAGAGTCCCTCGCCAC 60.109 60.000 0.00 0.00 46.49 5.01
442 443 1.545706 AAAGAGAGTCCCTCGCCACC 61.546 60.000 0.00 0.00 46.49 4.61
443 444 3.827898 GAGAGTCCCTCGCCACCG 61.828 72.222 0.00 0.00 35.36 4.94
504 505 3.745803 GTCGCCCGAGTCGTTCCT 61.746 66.667 12.31 0.00 0.00 3.36
505 506 3.744719 TCGCCCGAGTCGTTCCTG 61.745 66.667 12.31 0.00 0.00 3.86
506 507 4.796231 CGCCCGAGTCGTTCCTGG 62.796 72.222 12.31 6.09 0.00 4.45
508 509 4.796231 CCCGAGTCGTTCCTGGCG 62.796 72.222 12.31 0.00 0.00 5.69
509 510 3.744719 CCGAGTCGTTCCTGGCGA 61.745 66.667 12.31 0.00 35.89 5.54
514 515 3.744719 TCGTTCCTGGCGACTCGG 61.745 66.667 0.00 0.00 33.09 4.63
515 516 4.796231 CGTTCCTGGCGACTCGGG 62.796 72.222 0.00 0.00 34.52 5.14
516 517 4.452733 GTTCCTGGCGACTCGGGG 62.453 72.222 0.00 0.00 34.02 5.73
527 528 4.547367 CTCGGGGGCGTGGGAATC 62.547 72.222 0.00 0.00 0.00 2.52
529 530 4.547367 CGGGGGCGTGGGAATCTC 62.547 72.222 0.00 0.00 0.00 2.75
530 531 3.407967 GGGGGCGTGGGAATCTCA 61.408 66.667 0.00 0.00 0.00 3.27
531 532 2.674754 GGGGCGTGGGAATCTCAA 59.325 61.111 0.00 0.00 0.00 3.02
532 533 1.001393 GGGGCGTGGGAATCTCAAA 60.001 57.895 0.00 0.00 0.00 2.69
533 534 1.032114 GGGGCGTGGGAATCTCAAAG 61.032 60.000 0.00 0.00 0.00 2.77
534 535 0.035439 GGGCGTGGGAATCTCAAAGA 60.035 55.000 0.00 0.00 0.00 2.52
535 536 1.087501 GGCGTGGGAATCTCAAAGAC 58.912 55.000 0.00 0.00 0.00 3.01
536 537 0.721718 GCGTGGGAATCTCAAAGACG 59.278 55.000 0.00 0.00 0.00 4.18
537 538 1.359848 CGTGGGAATCTCAAAGACGG 58.640 55.000 0.00 0.00 0.00 4.79
538 539 1.067142 CGTGGGAATCTCAAAGACGGA 60.067 52.381 0.00 0.00 0.00 4.69
539 540 2.622436 GTGGGAATCTCAAAGACGGAG 58.378 52.381 0.00 0.00 0.00 4.63
540 541 1.555075 TGGGAATCTCAAAGACGGAGG 59.445 52.381 0.00 0.00 33.18 4.30
541 542 1.134371 GGGAATCTCAAAGACGGAGGG 60.134 57.143 0.00 0.00 33.18 4.30
542 543 1.657822 GAATCTCAAAGACGGAGGGC 58.342 55.000 0.00 0.00 33.18 5.19
543 544 0.984230 AATCTCAAAGACGGAGGGCA 59.016 50.000 0.00 0.00 33.18 5.36
544 545 1.207791 ATCTCAAAGACGGAGGGCAT 58.792 50.000 0.00 0.00 33.18 4.40
545 546 0.984230 TCTCAAAGACGGAGGGCATT 59.016 50.000 0.00 0.00 33.18 3.56
546 547 1.351017 TCTCAAAGACGGAGGGCATTT 59.649 47.619 0.00 0.00 33.18 2.32
547 548 1.740025 CTCAAAGACGGAGGGCATTTC 59.260 52.381 0.00 0.00 0.00 2.17
548 549 0.447801 CAAAGACGGAGGGCATTTCG 59.552 55.000 0.00 0.00 0.00 3.46
549 550 0.676782 AAAGACGGAGGGCATTTCGG 60.677 55.000 0.00 0.00 0.00 4.30
550 551 1.838073 AAGACGGAGGGCATTTCGGT 61.838 55.000 0.00 0.00 0.00 4.69
551 552 1.814169 GACGGAGGGCATTTCGGTC 60.814 63.158 7.47 7.47 37.61 4.79
552 553 2.513897 CGGAGGGCATTTCGGTCC 60.514 66.667 0.00 0.00 0.00 4.46
553 554 2.513897 GGAGGGCATTTCGGTCCG 60.514 66.667 4.39 4.39 37.71 4.79
554 555 2.513897 GAGGGCATTTCGGTCCGG 60.514 66.667 12.29 0.00 37.71 5.14
555 556 4.109675 AGGGCATTTCGGTCCGGG 62.110 66.667 12.29 0.06 37.71 5.73
557 558 4.796495 GGCATTTCGGTCCGGGCT 62.796 66.667 12.29 0.00 0.00 5.19
809 816 0.244994 GTCCGATCCATCCGATCCAG 59.755 60.000 0.00 0.00 44.07 3.86
828 835 3.727258 CACCGCCTTCCCATCCCA 61.727 66.667 0.00 0.00 0.00 4.37
1738 1775 2.989840 CGGAGCAAGAAACACTAGACAG 59.010 50.000 0.00 0.00 0.00 3.51
1739 1776 3.305403 CGGAGCAAGAAACACTAGACAGA 60.305 47.826 0.00 0.00 0.00 3.41
1740 1777 3.991121 GGAGCAAGAAACACTAGACAGAC 59.009 47.826 0.00 0.00 0.00 3.51
1741 1778 4.501571 GGAGCAAGAAACACTAGACAGACA 60.502 45.833 0.00 0.00 0.00 3.41
1801 1838 4.848357 CCCTTCTTCCTTGCTCTTTCATA 58.152 43.478 0.00 0.00 0.00 2.15
1812 1849 5.456921 TGCTCTTTCATATCCCTCCTTTT 57.543 39.130 0.00 0.00 0.00 2.27
1813 1850 5.831103 TGCTCTTTCATATCCCTCCTTTTT 58.169 37.500 0.00 0.00 0.00 1.94
1839 1876 4.746729 TCATCATTGGCTGCAATTGTTAC 58.253 39.130 7.40 0.00 0.00 2.50
1955 1992 1.590259 GTGGCTACTAGCGAGCTGC 60.590 63.158 14.94 2.21 43.62 5.25
2009 2046 6.469595 GTGTCGACATCTAGTTCAGTATGTTC 59.530 42.308 23.12 0.00 37.40 3.18
2137 2201 1.551883 GAAACCTGTCGCCCTACCTAA 59.448 52.381 0.00 0.00 0.00 2.69
2257 2328 2.919856 AGACCCTCAGCGCACACT 60.920 61.111 11.47 0.00 0.00 3.55
2258 2329 1.606601 AGACCCTCAGCGCACACTA 60.607 57.895 11.47 0.00 0.00 2.74
2345 2424 2.978156 TTGATCTTGCCAGACCCTTT 57.022 45.000 0.00 0.00 0.00 3.11
2422 2501 1.048601 ACGGTGTCCAGTGTTGAGAT 58.951 50.000 0.00 0.00 0.00 2.75
2425 2504 1.673033 GGTGTCCAGTGTTGAGATCCG 60.673 57.143 0.00 0.00 0.00 4.18
2491 2570 4.077184 CGCCGCTCCACCTTGGTA 62.077 66.667 0.00 0.00 39.03 3.25
2504 2583 1.674817 CCTTGGTAACCGCACGAGAAT 60.675 52.381 0.00 0.00 0.00 2.40
2505 2584 2.073816 CTTGGTAACCGCACGAGAATT 58.926 47.619 0.00 0.00 0.00 2.17
2601 2684 1.056660 CCTATGGGGGTAATGACGCT 58.943 55.000 0.00 0.00 38.54 5.07
2618 2702 0.179062 GCTGGAACATCGCCATCTCT 60.179 55.000 0.00 0.00 38.20 3.10
2639 2723 2.042842 TGATCTGGAAAGCCCAAATCCA 59.957 45.455 0.00 0.00 46.07 3.41
2659 2743 4.796495 GTTTCCCCCGGAGCGCAT 62.796 66.667 11.47 0.00 31.21 4.73
2713 2798 3.702478 GGTAACGACACCTACGGAC 57.298 57.895 0.00 0.00 35.55 4.79
2714 2799 0.179189 GGTAACGACACCTACGGACG 60.179 60.000 0.00 0.00 35.55 4.79
2715 2800 0.794605 GTAACGACACCTACGGACGC 60.795 60.000 0.00 0.00 34.93 5.19
2716 2801 2.239341 TAACGACACCTACGGACGCG 62.239 60.000 3.53 3.53 34.93 6.01
2717 2802 4.824166 CGACACCTACGGACGCGG 62.824 72.222 12.47 0.00 0.00 6.46
2734 2819 2.568612 GCCGAGGCCAAAAGAAGC 59.431 61.111 5.01 0.00 34.56 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.871039 GGTGTTCTTGTGCTTAGCGAA 59.129 47.619 0.00 0.00 0.00 4.70
1 2 1.070134 AGGTGTTCTTGTGCTTAGCGA 59.930 47.619 0.00 0.00 0.00 4.93
2 3 1.461127 GAGGTGTTCTTGTGCTTAGCG 59.539 52.381 0.00 0.00 0.00 4.26
3 4 2.739379 GAGAGGTGTTCTTGTGCTTAGC 59.261 50.000 0.00 0.00 35.87 3.09
4 5 3.007398 AGGAGAGGTGTTCTTGTGCTTAG 59.993 47.826 0.00 0.00 35.87 2.18
5 6 2.972713 AGGAGAGGTGTTCTTGTGCTTA 59.027 45.455 0.00 0.00 35.87 3.09
6 7 1.771255 AGGAGAGGTGTTCTTGTGCTT 59.229 47.619 0.00 0.00 35.87 3.91
7 8 1.346068 GAGGAGAGGTGTTCTTGTGCT 59.654 52.381 0.00 0.00 35.87 4.40
8 9 1.070758 TGAGGAGAGGTGTTCTTGTGC 59.929 52.381 0.00 0.00 35.87 4.57
9 10 2.630098 TCTGAGGAGAGGTGTTCTTGTG 59.370 50.000 0.00 0.00 35.87 3.33
10 11 2.964209 TCTGAGGAGAGGTGTTCTTGT 58.036 47.619 0.00 0.00 35.87 3.16
11 12 3.306641 CCTTCTGAGGAGAGGTGTTCTTG 60.307 52.174 0.00 0.00 46.74 3.02
12 13 2.903135 CCTTCTGAGGAGAGGTGTTCTT 59.097 50.000 0.00 0.00 46.74 2.52
13 14 2.534990 CCTTCTGAGGAGAGGTGTTCT 58.465 52.381 0.00 0.00 46.74 3.01
14 15 1.066502 GCCTTCTGAGGAGAGGTGTTC 60.067 57.143 0.00 0.00 46.74 3.18
15 16 0.980423 GCCTTCTGAGGAGAGGTGTT 59.020 55.000 0.00 0.00 46.74 3.32
16 17 0.116143 AGCCTTCTGAGGAGAGGTGT 59.884 55.000 0.00 0.00 46.74 4.16
17 18 2.151502 TAGCCTTCTGAGGAGAGGTG 57.848 55.000 0.00 0.00 46.74 4.00
18 19 3.052186 AGAATAGCCTTCTGAGGAGAGGT 60.052 47.826 0.00 0.00 46.74 3.85
19 20 3.575805 AGAATAGCCTTCTGAGGAGAGG 58.424 50.000 0.00 0.00 46.74 3.69
20 21 5.200368 GAAGAATAGCCTTCTGAGGAGAG 57.800 47.826 0.00 0.00 46.74 3.20
29 30 8.950208 ACAGTTATAACAGAAGAATAGCCTTC 57.050 34.615 17.65 0.00 42.07 3.46
30 31 9.384764 GAACAGTTATAACAGAAGAATAGCCTT 57.615 33.333 17.65 0.00 0.00 4.35
31 32 8.540388 TGAACAGTTATAACAGAAGAATAGCCT 58.460 33.333 17.65 0.00 0.00 4.58
32 33 8.718102 TGAACAGTTATAACAGAAGAATAGCC 57.282 34.615 17.65 0.00 0.00 3.93
39 40 9.334693 GCTGAAAATGAACAGTTATAACAGAAG 57.665 33.333 17.65 7.03 36.62 2.85
40 41 9.066892 AGCTGAAAATGAACAGTTATAACAGAA 57.933 29.630 17.65 2.54 36.62 3.02
41 42 8.621532 AGCTGAAAATGAACAGTTATAACAGA 57.378 30.769 17.65 0.00 36.62 3.41
42 43 8.506437 TGAGCTGAAAATGAACAGTTATAACAG 58.494 33.333 17.65 12.07 36.62 3.16
43 44 8.389779 TGAGCTGAAAATGAACAGTTATAACA 57.610 30.769 17.65 0.00 36.62 2.41
44 45 9.334693 CTTGAGCTGAAAATGAACAGTTATAAC 57.665 33.333 7.57 7.57 36.62 1.89
45 46 9.283768 TCTTGAGCTGAAAATGAACAGTTATAA 57.716 29.630 0.00 0.00 36.62 0.98
46 47 8.846943 TCTTGAGCTGAAAATGAACAGTTATA 57.153 30.769 0.00 0.00 36.62 0.98
47 48 7.094463 CCTCTTGAGCTGAAAATGAACAGTTAT 60.094 37.037 0.00 0.00 36.62 1.89
48 49 6.205464 CCTCTTGAGCTGAAAATGAACAGTTA 59.795 38.462 0.00 0.00 36.62 2.24
49 50 5.009410 CCTCTTGAGCTGAAAATGAACAGTT 59.991 40.000 0.00 0.00 36.62 3.16
50 51 4.518211 CCTCTTGAGCTGAAAATGAACAGT 59.482 41.667 0.00 0.00 36.62 3.55
51 52 4.518211 ACCTCTTGAGCTGAAAATGAACAG 59.482 41.667 0.00 0.00 37.22 3.16
52 53 4.464008 ACCTCTTGAGCTGAAAATGAACA 58.536 39.130 0.00 0.00 0.00 3.18
53 54 6.560253 TTACCTCTTGAGCTGAAAATGAAC 57.440 37.500 0.00 0.00 0.00 3.18
54 55 6.375455 GGATTACCTCTTGAGCTGAAAATGAA 59.625 38.462 0.00 0.00 0.00 2.57
55 56 5.882557 GGATTACCTCTTGAGCTGAAAATGA 59.117 40.000 0.00 0.00 0.00 2.57
56 57 5.649395 TGGATTACCTCTTGAGCTGAAAATG 59.351 40.000 0.00 0.00 37.04 2.32
57 58 5.649831 GTGGATTACCTCTTGAGCTGAAAAT 59.350 40.000 0.00 0.00 37.04 1.82
58 59 5.003804 GTGGATTACCTCTTGAGCTGAAAA 58.996 41.667 0.00 0.00 37.04 2.29
59 60 4.565652 GGTGGATTACCTCTTGAGCTGAAA 60.566 45.833 0.00 0.00 46.51 2.69
60 61 3.055094 GGTGGATTACCTCTTGAGCTGAA 60.055 47.826 0.00 0.00 46.51 3.02
61 62 2.501723 GGTGGATTACCTCTTGAGCTGA 59.498 50.000 0.00 0.00 46.51 4.26
62 63 2.911484 GGTGGATTACCTCTTGAGCTG 58.089 52.381 0.00 0.00 46.51 4.24
73 74 2.151202 CAGTGTGGTGTGGTGGATTAC 58.849 52.381 0.00 0.00 0.00 1.89
74 75 2.050918 TCAGTGTGGTGTGGTGGATTA 58.949 47.619 0.00 0.00 0.00 1.75
75 76 0.843309 TCAGTGTGGTGTGGTGGATT 59.157 50.000 0.00 0.00 0.00 3.01
76 77 0.843309 TTCAGTGTGGTGTGGTGGAT 59.157 50.000 0.00 0.00 0.00 3.41
77 78 0.180171 CTTCAGTGTGGTGTGGTGGA 59.820 55.000 0.00 0.00 0.00 4.02
78 79 0.107214 ACTTCAGTGTGGTGTGGTGG 60.107 55.000 0.00 0.00 0.00 4.61
79 80 2.483876 CTACTTCAGTGTGGTGTGGTG 58.516 52.381 0.00 0.00 0.00 4.17
80 81 1.416401 CCTACTTCAGTGTGGTGTGGT 59.584 52.381 0.00 0.00 0.00 4.16
81 82 1.270839 CCCTACTTCAGTGTGGTGTGG 60.271 57.143 0.00 0.00 0.00 4.17
82 83 1.416401 ACCCTACTTCAGTGTGGTGTG 59.584 52.381 2.37 0.00 33.74 3.82
83 84 1.802553 ACCCTACTTCAGTGTGGTGT 58.197 50.000 2.37 0.00 33.74 4.16
84 85 4.553330 AATACCCTACTTCAGTGTGGTG 57.447 45.455 10.84 2.20 35.67 4.17
85 86 5.046807 GTGTAATACCCTACTTCAGTGTGGT 60.047 44.000 7.24 7.24 37.17 4.16
86 87 5.416947 GTGTAATACCCTACTTCAGTGTGG 58.583 45.833 0.00 0.00 0.00 4.17
87 88 5.416947 GGTGTAATACCCTACTTCAGTGTG 58.583 45.833 0.00 0.00 44.15 3.82
88 89 5.672421 GGTGTAATACCCTACTTCAGTGT 57.328 43.478 0.00 0.00 44.15 3.55
116 117 3.615224 TTTATACTGGTTCGGGTCACC 57.385 47.619 0.00 0.00 34.52 4.02
117 118 5.019785 AGATTTATACTGGTTCGGGTCAC 57.980 43.478 0.00 0.00 0.00 3.67
118 119 5.687166 AAGATTTATACTGGTTCGGGTCA 57.313 39.130 0.00 0.00 0.00 4.02
119 120 8.672823 AAATAAGATTTATACTGGTTCGGGTC 57.327 34.615 0.00 0.00 0.00 4.46
120 121 8.491958 AGAAATAAGATTTATACTGGTTCGGGT 58.508 33.333 0.00 0.00 0.00 5.28
121 122 8.904099 AGAAATAAGATTTATACTGGTTCGGG 57.096 34.615 0.00 0.00 0.00 5.14
122 123 9.765795 AGAGAAATAAGATTTATACTGGTTCGG 57.234 33.333 0.00 0.00 0.00 4.30
133 134 9.162764 CCCAAAGAACGAGAGAAATAAGATTTA 57.837 33.333 0.00 0.00 0.00 1.40
134 135 7.665974 ACCCAAAGAACGAGAGAAATAAGATTT 59.334 33.333 0.00 0.00 0.00 2.17
135 136 7.168905 ACCCAAAGAACGAGAGAAATAAGATT 58.831 34.615 0.00 0.00 0.00 2.40
136 137 6.712276 ACCCAAAGAACGAGAGAAATAAGAT 58.288 36.000 0.00 0.00 0.00 2.40
137 138 6.110411 ACCCAAAGAACGAGAGAAATAAGA 57.890 37.500 0.00 0.00 0.00 2.10
138 139 6.401153 CGAACCCAAAGAACGAGAGAAATAAG 60.401 42.308 0.00 0.00 0.00 1.73
139 140 5.407387 CGAACCCAAAGAACGAGAGAAATAA 59.593 40.000 0.00 0.00 0.00 1.40
140 141 4.927425 CGAACCCAAAGAACGAGAGAAATA 59.073 41.667 0.00 0.00 0.00 1.40
141 142 3.746492 CGAACCCAAAGAACGAGAGAAAT 59.254 43.478 0.00 0.00 0.00 2.17
142 143 3.128349 CGAACCCAAAGAACGAGAGAAA 58.872 45.455 0.00 0.00 0.00 2.52
143 144 2.101917 ACGAACCCAAAGAACGAGAGAA 59.898 45.455 0.00 0.00 0.00 2.87
144 145 1.684983 ACGAACCCAAAGAACGAGAGA 59.315 47.619 0.00 0.00 0.00 3.10
145 146 2.059541 GACGAACCCAAAGAACGAGAG 58.940 52.381 0.00 0.00 0.00 3.20
146 147 1.601162 CGACGAACCCAAAGAACGAGA 60.601 52.381 0.00 0.00 0.00 4.04
147 148 0.782384 CGACGAACCCAAAGAACGAG 59.218 55.000 0.00 0.00 0.00 4.18
148 149 0.385029 TCGACGAACCCAAAGAACGA 59.615 50.000 0.00 0.00 0.00 3.85
149 150 0.782384 CTCGACGAACCCAAAGAACG 59.218 55.000 0.00 0.00 0.00 3.95
150 151 1.861971 ACTCGACGAACCCAAAGAAC 58.138 50.000 0.00 0.00 0.00 3.01
151 152 2.607631 AACTCGACGAACCCAAAGAA 57.392 45.000 0.00 0.00 0.00 2.52
152 153 2.029649 CCTAACTCGACGAACCCAAAGA 60.030 50.000 0.00 0.00 0.00 2.52
153 154 2.334838 CCTAACTCGACGAACCCAAAG 58.665 52.381 0.00 0.00 0.00 2.77
154 155 1.606224 GCCTAACTCGACGAACCCAAA 60.606 52.381 0.00 0.00 0.00 3.28
155 156 0.037975 GCCTAACTCGACGAACCCAA 60.038 55.000 0.00 0.00 0.00 4.12
156 157 1.588082 GCCTAACTCGACGAACCCA 59.412 57.895 0.00 0.00 0.00 4.51
157 158 1.153686 GGCCTAACTCGACGAACCC 60.154 63.158 0.00 0.00 0.00 4.11
158 159 1.515736 CGGCCTAACTCGACGAACC 60.516 63.158 0.00 0.00 0.00 3.62
159 160 1.069378 CACGGCCTAACTCGACGAAC 61.069 60.000 0.00 0.00 0.00 3.95
160 161 1.210931 CACGGCCTAACTCGACGAA 59.789 57.895 0.00 0.00 0.00 3.85
161 162 1.642037 CTCACGGCCTAACTCGACGA 61.642 60.000 0.00 0.00 0.00 4.20
162 163 1.226323 CTCACGGCCTAACTCGACG 60.226 63.158 0.00 0.00 0.00 5.12
163 164 0.739561 ATCTCACGGCCTAACTCGAC 59.260 55.000 0.00 0.00 0.00 4.20
164 165 1.022735 GATCTCACGGCCTAACTCGA 58.977 55.000 0.00 0.00 0.00 4.04
165 166 0.738975 TGATCTCACGGCCTAACTCG 59.261 55.000 0.00 0.00 0.00 4.18
166 167 3.609644 CGTATGATCTCACGGCCTAACTC 60.610 52.174 0.00 0.00 34.57 3.01
167 168 2.293677 CGTATGATCTCACGGCCTAACT 59.706 50.000 0.00 0.00 34.57 2.24
168 169 2.292569 TCGTATGATCTCACGGCCTAAC 59.707 50.000 16.21 0.00 38.66 2.34
169 170 2.578786 TCGTATGATCTCACGGCCTAA 58.421 47.619 16.21 0.00 38.66 2.69
170 171 2.265589 TCGTATGATCTCACGGCCTA 57.734 50.000 16.21 0.00 38.66 3.93
171 172 1.338337 CTTCGTATGATCTCACGGCCT 59.662 52.381 16.21 0.00 38.66 5.19
172 173 1.067212 ACTTCGTATGATCTCACGGCC 59.933 52.381 16.21 0.00 38.66 6.13
173 174 2.120232 CACTTCGTATGATCTCACGGC 58.880 52.381 16.21 0.00 38.66 5.68
174 175 3.108881 CACACTTCGTATGATCTCACGG 58.891 50.000 16.21 6.96 38.66 4.94
175 176 2.531912 GCACACTTCGTATGATCTCACG 59.468 50.000 11.85 11.85 39.48 4.35
176 177 2.531912 CGCACACTTCGTATGATCTCAC 59.468 50.000 0.00 0.00 0.00 3.51
177 178 2.422127 TCGCACACTTCGTATGATCTCA 59.578 45.455 0.00 0.00 0.00 3.27
178 179 3.039405 CTCGCACACTTCGTATGATCTC 58.961 50.000 0.00 0.00 0.00 2.75
179 180 2.796383 GCTCGCACACTTCGTATGATCT 60.796 50.000 0.00 0.00 0.00 2.75
180 181 1.518929 GCTCGCACACTTCGTATGATC 59.481 52.381 0.00 0.00 0.00 2.92
181 182 1.135139 AGCTCGCACACTTCGTATGAT 59.865 47.619 0.00 0.00 0.00 2.45
182 183 0.526211 AGCTCGCACACTTCGTATGA 59.474 50.000 0.00 0.00 0.00 2.15
183 184 1.846782 GTAGCTCGCACACTTCGTATG 59.153 52.381 0.00 0.00 0.00 2.39
184 185 1.471287 TGTAGCTCGCACACTTCGTAT 59.529 47.619 0.00 0.00 0.00 3.06
185 186 0.876399 TGTAGCTCGCACACTTCGTA 59.124 50.000 0.00 0.00 0.00 3.43
186 187 0.387367 CTGTAGCTCGCACACTTCGT 60.387 55.000 0.00 0.00 0.00 3.85
187 188 0.109735 TCTGTAGCTCGCACACTTCG 60.110 55.000 0.00 0.00 0.00 3.79
188 189 1.200252 TCTCTGTAGCTCGCACACTTC 59.800 52.381 0.00 0.00 0.00 3.01
189 190 1.248486 TCTCTGTAGCTCGCACACTT 58.752 50.000 0.00 0.00 0.00 3.16
190 191 1.201181 CTTCTCTGTAGCTCGCACACT 59.799 52.381 0.00 0.00 0.00 3.55
191 192 1.623359 CTTCTCTGTAGCTCGCACAC 58.377 55.000 0.00 0.00 0.00 3.82
192 193 0.528017 CCTTCTCTGTAGCTCGCACA 59.472 55.000 0.00 0.00 0.00 4.57
193 194 0.811915 TCCTTCTCTGTAGCTCGCAC 59.188 55.000 0.00 0.00 0.00 5.34
194 195 1.098869 CTCCTTCTCTGTAGCTCGCA 58.901 55.000 0.00 0.00 0.00 5.10
195 196 0.383949 CCTCCTTCTCTGTAGCTCGC 59.616 60.000 0.00 0.00 0.00 5.03
196 197 1.028905 CCCTCCTTCTCTGTAGCTCG 58.971 60.000 0.00 0.00 0.00 5.03
197 198 2.445682 TCCCTCCTTCTCTGTAGCTC 57.554 55.000 0.00 0.00 0.00 4.09
198 199 2.517980 AGATCCCTCCTTCTCTGTAGCT 59.482 50.000 0.00 0.00 0.00 3.32
199 200 2.957474 AGATCCCTCCTTCTCTGTAGC 58.043 52.381 0.00 0.00 0.00 3.58
200 201 4.714308 ACAAAGATCCCTCCTTCTCTGTAG 59.286 45.833 0.00 0.00 0.00 2.74
201 202 4.689062 ACAAAGATCCCTCCTTCTCTGTA 58.311 43.478 0.00 0.00 0.00 2.74
202 203 3.525862 ACAAAGATCCCTCCTTCTCTGT 58.474 45.455 0.00 0.00 0.00 3.41
203 204 5.130145 ACATACAAAGATCCCTCCTTCTCTG 59.870 44.000 0.00 0.00 0.00 3.35
204 205 5.284582 ACATACAAAGATCCCTCCTTCTCT 58.715 41.667 0.00 0.00 0.00 3.10
205 206 5.622346 ACATACAAAGATCCCTCCTTCTC 57.378 43.478 0.00 0.00 0.00 2.87
206 207 5.367060 GGTACATACAAAGATCCCTCCTTCT 59.633 44.000 0.00 0.00 0.00 2.85
207 208 5.454897 GGGTACATACAAAGATCCCTCCTTC 60.455 48.000 0.00 0.00 0.00 3.46
208 209 4.412528 GGGTACATACAAAGATCCCTCCTT 59.587 45.833 0.00 0.00 0.00 3.36
209 210 3.974642 GGGTACATACAAAGATCCCTCCT 59.025 47.826 0.00 0.00 0.00 3.69
210 211 3.714798 TGGGTACATACAAAGATCCCTCC 59.285 47.826 0.00 0.00 35.00 4.30
211 212 4.409247 ACTGGGTACATACAAAGATCCCTC 59.591 45.833 0.00 0.00 35.00 4.30
212 213 4.371681 ACTGGGTACATACAAAGATCCCT 58.628 43.478 0.00 0.00 35.00 4.20
213 214 4.772886 ACTGGGTACATACAAAGATCCC 57.227 45.455 0.00 0.00 0.00 3.85
214 215 6.645415 CGAATACTGGGTACATACAAAGATCC 59.355 42.308 0.00 0.00 0.00 3.36
215 216 7.431249 TCGAATACTGGGTACATACAAAGATC 58.569 38.462 0.00 0.00 0.00 2.75
216 217 7.356089 TCGAATACTGGGTACATACAAAGAT 57.644 36.000 0.00 0.00 0.00 2.40
217 218 6.778834 TCGAATACTGGGTACATACAAAGA 57.221 37.500 0.00 0.00 0.00 2.52
218 219 7.039882 AGTTCGAATACTGGGTACATACAAAG 58.960 38.462 0.00 0.00 0.00 2.77
219 220 6.938507 AGTTCGAATACTGGGTACATACAAA 58.061 36.000 0.00 0.00 0.00 2.83
220 221 6.534475 AGTTCGAATACTGGGTACATACAA 57.466 37.500 0.00 0.00 0.00 2.41
221 222 6.153170 TGAAGTTCGAATACTGGGTACATACA 59.847 38.462 0.00 0.00 0.00 2.29
222 223 6.567050 TGAAGTTCGAATACTGGGTACATAC 58.433 40.000 0.00 0.00 0.00 2.39
223 224 6.778834 TGAAGTTCGAATACTGGGTACATA 57.221 37.500 0.00 0.00 0.00 2.29
224 225 5.670792 TGAAGTTCGAATACTGGGTACAT 57.329 39.130 0.00 0.00 0.00 2.29
225 226 5.471556 TTGAAGTTCGAATACTGGGTACA 57.528 39.130 0.00 0.00 0.00 2.90
226 227 5.350640 CCTTTGAAGTTCGAATACTGGGTAC 59.649 44.000 0.00 0.00 0.00 3.34
227 228 5.012354 ACCTTTGAAGTTCGAATACTGGGTA 59.988 40.000 10.56 0.00 0.00 3.69
228 229 4.202430 ACCTTTGAAGTTCGAATACTGGGT 60.202 41.667 0.00 6.90 0.00 4.51
229 230 4.324267 ACCTTTGAAGTTCGAATACTGGG 58.676 43.478 0.00 6.32 0.00 4.45
230 231 5.941948 AACCTTTGAAGTTCGAATACTGG 57.058 39.130 0.00 6.65 0.00 4.00
231 232 6.142320 GCAAAACCTTTGAAGTTCGAATACTG 59.858 38.462 0.00 2.26 0.00 2.74
232 233 6.206498 GCAAAACCTTTGAAGTTCGAATACT 58.794 36.000 0.00 0.00 0.00 2.12
233 234 5.401376 GGCAAAACCTTTGAAGTTCGAATAC 59.599 40.000 0.00 0.00 34.51 1.89
234 235 5.525199 GGCAAAACCTTTGAAGTTCGAATA 58.475 37.500 0.00 0.00 34.51 1.75
235 236 4.368315 GGCAAAACCTTTGAAGTTCGAAT 58.632 39.130 0.00 0.00 34.51 3.34
236 237 3.732471 CGGCAAAACCTTTGAAGTTCGAA 60.732 43.478 5.43 5.43 35.61 3.71
237 238 2.223386 CGGCAAAACCTTTGAAGTTCGA 60.223 45.455 3.35 0.00 35.61 3.71
238 239 2.116366 CGGCAAAACCTTTGAAGTTCG 58.884 47.619 3.35 0.00 35.61 3.95
239 240 3.430333 TCGGCAAAACCTTTGAAGTTC 57.570 42.857 3.35 0.00 35.61 3.01
240 241 3.878160 TTCGGCAAAACCTTTGAAGTT 57.122 38.095 3.35 0.00 35.61 2.66
241 242 3.517602 GTTTCGGCAAAACCTTTGAAGT 58.482 40.909 3.35 0.00 41.23 3.01
250 251 3.671459 CGGATTTTAGGTTTCGGCAAAAC 59.329 43.478 5.60 5.60 45.46 2.43
251 252 3.568853 TCGGATTTTAGGTTTCGGCAAAA 59.431 39.130 0.00 0.00 0.00 2.44
252 253 3.058085 GTCGGATTTTAGGTTTCGGCAAA 60.058 43.478 0.00 0.00 0.00 3.68
253 254 2.485038 GTCGGATTTTAGGTTTCGGCAA 59.515 45.455 0.00 0.00 0.00 4.52
254 255 2.078392 GTCGGATTTTAGGTTTCGGCA 58.922 47.619 0.00 0.00 0.00 5.69
255 256 2.078392 TGTCGGATTTTAGGTTTCGGC 58.922 47.619 0.00 0.00 0.00 5.54
256 257 2.095372 GCTGTCGGATTTTAGGTTTCGG 59.905 50.000 0.00 0.00 0.00 4.30
257 258 3.000727 AGCTGTCGGATTTTAGGTTTCG 58.999 45.455 0.00 0.00 0.00 3.46
258 259 3.426292 GCAGCTGTCGGATTTTAGGTTTC 60.426 47.826 16.64 0.00 0.00 2.78
259 260 2.488153 GCAGCTGTCGGATTTTAGGTTT 59.512 45.455 16.64 0.00 0.00 3.27
260 261 2.084546 GCAGCTGTCGGATTTTAGGTT 58.915 47.619 16.64 0.00 0.00 3.50
261 262 1.739067 GCAGCTGTCGGATTTTAGGT 58.261 50.000 16.64 0.00 0.00 3.08
262 263 0.652592 CGCAGCTGTCGGATTTTAGG 59.347 55.000 16.64 0.00 0.00 2.69
263 264 1.324736 GACGCAGCTGTCGGATTTTAG 59.675 52.381 26.36 6.47 0.00 1.85
264 265 1.355971 GACGCAGCTGTCGGATTTTA 58.644 50.000 26.36 0.00 0.00 1.52
265 266 2.162716 GACGCAGCTGTCGGATTTT 58.837 52.632 26.36 11.31 0.00 1.82
266 267 3.876300 GACGCAGCTGTCGGATTT 58.124 55.556 26.36 11.61 0.00 2.17
277 278 1.344942 GAGTTGTAGGTGCGACGCAG 61.345 60.000 25.21 0.00 40.08 5.18
278 279 1.372499 GAGTTGTAGGTGCGACGCA 60.372 57.895 20.50 20.50 35.60 5.24
279 280 2.092882 GGAGTTGTAGGTGCGACGC 61.093 63.158 14.19 14.19 0.00 5.19
280 281 1.800315 CGGAGTTGTAGGTGCGACG 60.800 63.158 0.00 0.00 0.00 5.12
281 282 2.092882 GCGGAGTTGTAGGTGCGAC 61.093 63.158 0.00 0.00 0.00 5.19
282 283 2.260434 GCGGAGTTGTAGGTGCGA 59.740 61.111 0.00 0.00 0.00 5.10
283 284 2.813908 GGCGGAGTTGTAGGTGCG 60.814 66.667 0.00 0.00 0.00 5.34
284 285 2.813908 CGGCGGAGTTGTAGGTGC 60.814 66.667 0.00 0.00 0.00 5.01
285 286 1.005394 AACGGCGGAGTTGTAGGTG 60.005 57.895 13.24 0.00 32.39 4.00
286 287 1.291272 GAACGGCGGAGTTGTAGGT 59.709 57.895 13.24 0.00 34.00 3.08
287 288 0.320073 TTGAACGGCGGAGTTGTAGG 60.320 55.000 13.24 0.00 34.00 3.18
288 289 1.068474 CTTGAACGGCGGAGTTGTAG 58.932 55.000 13.24 0.00 34.00 2.74
289 290 0.320073 CCTTGAACGGCGGAGTTGTA 60.320 55.000 13.24 0.00 34.00 2.41
290 291 1.597027 CCTTGAACGGCGGAGTTGT 60.597 57.895 13.24 0.00 34.00 3.32
291 292 2.966309 GCCTTGAACGGCGGAGTTG 61.966 63.158 13.24 0.00 40.79 3.16
292 293 2.668550 GCCTTGAACGGCGGAGTT 60.669 61.111 13.24 0.00 40.79 3.01
308 309 4.408821 TGTGGTGATCGGCCCTGC 62.409 66.667 0.00 0.00 0.00 4.85
309 310 2.436646 GTGTGGTGATCGGCCCTG 60.437 66.667 0.00 0.00 0.00 4.45
310 311 3.717294 GGTGTGGTGATCGGCCCT 61.717 66.667 0.00 0.00 0.00 5.19
351 352 2.124011 ATTCAATTTATGCGGCGCAG 57.876 45.000 38.27 23.96 43.65 5.18
352 353 2.191802 CAATTCAATTTATGCGGCGCA 58.808 42.857 38.09 38.09 44.86 6.09
353 354 1.522258 CCAATTCAATTTATGCGGCGC 59.478 47.619 27.44 27.44 0.00 6.53
354 355 1.522258 GCCAATTCAATTTATGCGGCG 59.478 47.619 0.51 0.51 0.00 6.46
355 356 1.866601 GGCCAATTCAATTTATGCGGC 59.133 47.619 0.00 0.61 37.57 6.53
356 357 2.126467 CGGCCAATTCAATTTATGCGG 58.874 47.619 2.24 0.00 0.00 5.69
357 358 1.522258 GCGGCCAATTCAATTTATGCG 59.478 47.619 2.24 0.00 0.00 4.73
358 359 1.522258 CGCGGCCAATTCAATTTATGC 59.478 47.619 2.24 0.00 0.00 3.14
359 360 2.788786 GACGCGGCCAATTCAATTTATG 59.211 45.455 12.47 0.00 0.00 1.90
360 361 2.425312 TGACGCGGCCAATTCAATTTAT 59.575 40.909 10.82 0.00 0.00 1.40
361 362 1.813178 TGACGCGGCCAATTCAATTTA 59.187 42.857 10.82 0.00 0.00 1.40
362 363 0.600557 TGACGCGGCCAATTCAATTT 59.399 45.000 10.82 0.00 0.00 1.82
363 364 0.109319 GTGACGCGGCCAATTCAATT 60.109 50.000 10.82 0.00 0.00 2.32
364 365 1.506262 GTGACGCGGCCAATTCAAT 59.494 52.632 10.82 0.00 0.00 2.57
365 366 2.622011 GGTGACGCGGCCAATTCAA 61.622 57.895 10.82 0.00 0.00 2.69
366 367 3.053291 GGTGACGCGGCCAATTCA 61.053 61.111 10.82 0.00 0.00 2.57
367 368 3.053291 TGGTGACGCGGCCAATTC 61.053 61.111 10.82 0.00 0.00 2.17
368 369 3.361977 GTGGTGACGCGGCCAATT 61.362 61.111 10.82 0.00 36.41 2.32
369 370 4.634703 TGTGGTGACGCGGCCAAT 62.635 61.111 10.82 0.00 46.31 3.16
376 377 1.562575 CCCTAAACGTGTGGTGACGC 61.563 60.000 0.00 0.00 43.33 5.19
377 378 0.947180 CCCCTAAACGTGTGGTGACG 60.947 60.000 0.00 0.00 45.09 4.35
378 379 0.604511 CCCCCTAAACGTGTGGTGAC 60.605 60.000 0.00 0.00 0.00 3.67
379 380 1.756024 CCCCCTAAACGTGTGGTGA 59.244 57.895 0.00 0.00 0.00 4.02
380 381 1.969589 GCCCCCTAAACGTGTGGTG 60.970 63.158 0.00 0.00 0.00 4.17
381 382 2.433004 GCCCCCTAAACGTGTGGT 59.567 61.111 0.00 0.00 0.00 4.16
382 383 2.360726 GGCCCCCTAAACGTGTGG 60.361 66.667 0.00 0.00 0.00 4.17
383 384 0.253610 TATGGCCCCCTAAACGTGTG 59.746 55.000 0.00 0.00 0.00 3.82
384 385 0.253894 GTATGGCCCCCTAAACGTGT 59.746 55.000 0.00 0.00 0.00 4.49
385 386 0.544697 AGTATGGCCCCCTAAACGTG 59.455 55.000 0.00 0.00 0.00 4.49
386 387 1.764723 GTAGTATGGCCCCCTAAACGT 59.235 52.381 0.00 0.00 0.00 3.99
387 388 1.071228 GGTAGTATGGCCCCCTAAACG 59.929 57.143 0.00 0.00 0.00 3.60
388 389 1.422781 GGGTAGTATGGCCCCCTAAAC 59.577 57.143 0.00 0.00 38.99 2.01
389 390 1.823764 GGGTAGTATGGCCCCCTAAA 58.176 55.000 0.00 0.00 38.99 1.85
390 391 3.583382 GGGTAGTATGGCCCCCTAA 57.417 57.895 0.00 0.00 38.99 2.69
395 396 1.976404 GTCTTAGGGGTAGTATGGCCC 59.024 57.143 0.00 0.00 44.09 5.80
396 397 1.617357 CGTCTTAGGGGTAGTATGGCC 59.383 57.143 0.00 0.00 0.00 5.36
397 398 2.035576 CACGTCTTAGGGGTAGTATGGC 59.964 54.545 0.00 0.00 0.00 4.40
398 399 2.626743 CCACGTCTTAGGGGTAGTATGG 59.373 54.545 0.00 0.00 0.00 2.74
399 400 2.626743 CCCACGTCTTAGGGGTAGTATG 59.373 54.545 0.60 0.00 41.58 2.39
400 401 2.515429 TCCCACGTCTTAGGGGTAGTAT 59.485 50.000 8.72 0.00 45.51 2.12
401 402 1.922447 TCCCACGTCTTAGGGGTAGTA 59.078 52.381 8.72 0.00 45.51 1.82
402 403 0.706433 TCCCACGTCTTAGGGGTAGT 59.294 55.000 8.72 0.00 45.51 2.73
403 404 1.064166 TCTCCCACGTCTTAGGGGTAG 60.064 57.143 8.72 5.28 45.51 3.18
404 405 1.002069 TCTCCCACGTCTTAGGGGTA 58.998 55.000 8.72 0.00 45.51 3.69
405 406 0.115745 TTCTCCCACGTCTTAGGGGT 59.884 55.000 8.72 0.00 45.51 4.95
406 407 1.207329 CTTTCTCCCACGTCTTAGGGG 59.793 57.143 8.72 5.23 45.51 4.79
407 408 2.166664 CTCTTTCTCCCACGTCTTAGGG 59.833 54.545 2.20 2.20 46.90 3.53
408 409 3.090037 TCTCTTTCTCCCACGTCTTAGG 58.910 50.000 0.00 0.00 0.00 2.69
409 410 3.759618 ACTCTCTTTCTCCCACGTCTTAG 59.240 47.826 0.00 0.00 0.00 2.18
410 411 3.757493 GACTCTCTTTCTCCCACGTCTTA 59.243 47.826 0.00 0.00 0.00 2.10
411 412 2.559231 GACTCTCTTTCTCCCACGTCTT 59.441 50.000 0.00 0.00 0.00 3.01
412 413 2.164338 GACTCTCTTTCTCCCACGTCT 58.836 52.381 0.00 0.00 0.00 4.18
413 414 1.202817 GGACTCTCTTTCTCCCACGTC 59.797 57.143 0.00 0.00 0.00 4.34
414 415 1.258676 GGACTCTCTTTCTCCCACGT 58.741 55.000 0.00 0.00 0.00 4.49
415 416 0.533032 GGGACTCTCTTTCTCCCACG 59.467 60.000 0.00 0.00 43.09 4.94
416 417 1.945580 AGGGACTCTCTTTCTCCCAC 58.054 55.000 4.79 0.00 45.70 4.61
464 465 4.974721 AACCTTGGCCTGCGGTGG 62.975 66.667 3.32 0.00 0.00 4.61
465 466 3.673484 CAACCTTGGCCTGCGGTG 61.673 66.667 3.32 0.00 0.00 4.94
466 467 4.974721 CCAACCTTGGCCTGCGGT 62.975 66.667 3.32 4.66 42.21 5.68
487 488 3.745803 AGGAACGACTCGGGCGAC 61.746 66.667 6.14 0.00 0.00 5.19
488 489 3.744719 CAGGAACGACTCGGGCGA 61.745 66.667 6.14 0.00 0.00 5.54
489 490 4.796231 CCAGGAACGACTCGGGCG 62.796 72.222 2.98 0.00 0.00 6.13
491 492 4.796231 CGCCAGGAACGACTCGGG 62.796 72.222 2.98 0.00 0.00 5.14
492 493 3.744719 TCGCCAGGAACGACTCGG 61.745 66.667 2.98 0.00 33.96 4.63
497 498 3.744719 CCGAGTCGCCAGGAACGA 61.745 66.667 7.12 0.00 37.17 3.85
498 499 4.796231 CCCGAGTCGCCAGGAACG 62.796 72.222 7.12 0.00 0.00 3.95
499 500 4.452733 CCCCGAGTCGCCAGGAAC 62.453 72.222 7.12 0.00 0.00 3.62
510 511 4.547367 GATTCCCACGCCCCCGAG 62.547 72.222 0.00 0.00 38.29 4.63
512 513 4.547367 GAGATTCCCACGCCCCCG 62.547 72.222 0.00 0.00 41.14 5.73
513 514 2.493273 TTTGAGATTCCCACGCCCCC 62.493 60.000 0.00 0.00 0.00 5.40
514 515 1.001393 TTTGAGATTCCCACGCCCC 60.001 57.895 0.00 0.00 0.00 5.80
515 516 0.035439 TCTTTGAGATTCCCACGCCC 60.035 55.000 0.00 0.00 0.00 6.13
516 517 1.087501 GTCTTTGAGATTCCCACGCC 58.912 55.000 0.00 0.00 0.00 5.68
517 518 0.721718 CGTCTTTGAGATTCCCACGC 59.278 55.000 0.00 0.00 0.00 5.34
518 519 1.067142 TCCGTCTTTGAGATTCCCACG 60.067 52.381 0.00 0.00 0.00 4.94
519 520 2.622436 CTCCGTCTTTGAGATTCCCAC 58.378 52.381 0.00 0.00 31.26 4.61
520 521 1.555075 CCTCCGTCTTTGAGATTCCCA 59.445 52.381 0.00 0.00 31.26 4.37
521 522 1.134371 CCCTCCGTCTTTGAGATTCCC 60.134 57.143 0.00 0.00 31.26 3.97
522 523 1.744114 GCCCTCCGTCTTTGAGATTCC 60.744 57.143 0.00 0.00 31.26 3.01
523 524 1.066143 TGCCCTCCGTCTTTGAGATTC 60.066 52.381 0.00 0.00 31.26 2.52
524 525 0.984230 TGCCCTCCGTCTTTGAGATT 59.016 50.000 0.00 0.00 31.26 2.40
525 526 1.207791 ATGCCCTCCGTCTTTGAGAT 58.792 50.000 0.00 0.00 31.26 2.75
526 527 0.984230 AATGCCCTCCGTCTTTGAGA 59.016 50.000 0.00 0.00 31.26 3.27
527 528 1.740025 GAAATGCCCTCCGTCTTTGAG 59.260 52.381 0.00 0.00 0.00 3.02
528 529 1.821216 GAAATGCCCTCCGTCTTTGA 58.179 50.000 0.00 0.00 0.00 2.69
529 530 0.447801 CGAAATGCCCTCCGTCTTTG 59.552 55.000 0.00 0.00 0.00 2.77
530 531 0.676782 CCGAAATGCCCTCCGTCTTT 60.677 55.000 0.00 0.00 0.00 2.52
531 532 1.078426 CCGAAATGCCCTCCGTCTT 60.078 57.895 0.00 0.00 0.00 3.01
532 533 2.240162 GACCGAAATGCCCTCCGTCT 62.240 60.000 0.00 0.00 0.00 4.18
533 534 1.814169 GACCGAAATGCCCTCCGTC 60.814 63.158 0.00 0.00 0.00 4.79
534 535 2.267961 GACCGAAATGCCCTCCGT 59.732 61.111 0.00 0.00 0.00 4.69
535 536 2.513897 GGACCGAAATGCCCTCCG 60.514 66.667 0.00 0.00 0.00 4.63
536 537 2.513897 CGGACCGAAATGCCCTCC 60.514 66.667 8.64 0.00 0.00 4.30
537 538 2.513897 CCGGACCGAAATGCCCTC 60.514 66.667 17.49 0.00 0.00 4.30
538 539 4.109675 CCCGGACCGAAATGCCCT 62.110 66.667 17.49 0.00 0.00 5.19
540 541 4.796495 AGCCCGGACCGAAATGCC 62.796 66.667 17.49 0.00 0.00 4.40
541 542 3.202706 GAGCCCGGACCGAAATGC 61.203 66.667 17.49 12.20 0.00 3.56
542 543 2.890474 CGAGCCCGGACCGAAATG 60.890 66.667 17.49 1.72 0.00 2.32
543 544 3.072468 TCGAGCCCGGACCGAAAT 61.072 61.111 17.49 0.00 36.24 2.17
544 545 3.755628 CTCGAGCCCGGACCGAAA 61.756 66.667 17.49 0.00 36.24 3.46
545 546 4.728110 TCTCGAGCCCGGACCGAA 62.728 66.667 17.49 0.00 36.24 4.30
583 584 5.220453 CGTTAGACGTTTAATAATGGCCGTT 60.220 40.000 16.02 16.02 36.74 4.44
853 860 2.203938 TCCACCTCCACCTCCACC 60.204 66.667 0.00 0.00 0.00 4.61
915 934 2.678934 TCTAACCCGGCTCGCTGT 60.679 61.111 0.00 0.00 0.00 4.40
1644 1681 1.067283 CACAGCACACAAAACACCCAA 60.067 47.619 0.00 0.00 0.00 4.12
1812 1849 5.047164 ACAATTGCAGCCAATGATGAGTAAA 60.047 36.000 5.05 0.00 40.69 2.01
1813 1850 4.463539 ACAATTGCAGCCAATGATGAGTAA 59.536 37.500 5.05 0.00 40.69 2.24
1839 1876 3.081061 TCCTTGAAACCACAATCCATCG 58.919 45.455 0.00 0.00 0.00 3.84
1977 2014 4.797693 ACTAGATGTCGACACTATGACG 57.202 45.455 22.71 13.47 37.94 4.35
2009 2046 5.786311 TGATGCATCCTCCTTTTCAAAAAG 58.214 37.500 23.67 8.02 43.82 2.27
2086 2143 6.699575 AGATTGCTTTGGGTATTCATGTAC 57.300 37.500 0.00 0.00 0.00 2.90
2137 2201 4.409247 GGTAGGGACACATCATTAACCTCT 59.591 45.833 0.00 0.00 0.00 3.69
2257 2328 3.490933 GGATTCTAGAGTGCGCACATGTA 60.491 47.826 39.21 25.21 0.00 2.29
2258 2329 2.544685 GATTCTAGAGTGCGCACATGT 58.455 47.619 39.21 25.44 0.00 3.21
2268 2347 2.017559 GCGGTGGCGGATTCTAGAGT 62.018 60.000 0.00 0.00 0.00 3.24
2345 2424 4.321966 TGGTGGCATCGACGGCAA 62.322 61.111 10.03 0.00 43.86 4.52
2491 2570 2.006888 CCACATAATTCTCGTGCGGTT 58.993 47.619 0.00 0.00 0.00 4.44
2504 2583 2.185867 GCGCGGGTCTCCACATAA 59.814 61.111 8.83 0.00 0.00 1.90
2505 2584 3.845259 GGCGCGGGTCTCCACATA 61.845 66.667 8.83 0.00 0.00 2.29
2601 2684 1.194218 TCAGAGATGGCGATGTTCCA 58.806 50.000 0.00 0.00 38.09 3.53
2659 2743 1.831286 GGGCGATTCTCGGTCCCTA 60.831 63.158 5.34 0.00 38.58 3.53
2717 2802 2.568612 GCTTCTTTTGGCCTCGGC 59.431 61.111 3.32 0.00 41.06 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.