Multiple sequence alignment - TraesCS1A01G155500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G155500 chr1A 100.000 3314 0 0 1 3314 274110883 274107570 0.000000e+00 6120.0
1 TraesCS1A01G155500 chr1D 96.835 2275 51 10 793 3049 215066223 215063952 0.000000e+00 3783.0
2 TraesCS1A01G155500 chr1D 97.368 266 6 1 3050 3314 215063904 215063639 5.040000e-123 451.0
3 TraesCS1A01G155500 chr1D 82.249 338 41 8 481 814 215067397 215067075 1.170000e-69 274.0
4 TraesCS1A01G155500 chr1B 96.665 2069 38 11 799 2850 308383058 308381004 0.000000e+00 3410.0
5 TraesCS1A01G155500 chr1B 93.585 265 15 1 3050 3314 308380804 308380542 8.620000e-106 394.0
6 TraesCS1A01G155500 chr1B 83.432 338 36 15 481 814 308384076 308383755 2.500000e-76 296.0
7 TraesCS1A01G155500 chr1B 98.246 114 2 0 2936 3049 308380965 308380852 2.020000e-47 200.0
8 TraesCS1A01G155500 chr2D 85.333 75 11 0 240 314 555602914 555602988 9.860000e-11 78.7
9 TraesCS1A01G155500 chr3B 83.824 68 8 3 248 314 398855883 398855818 9.930000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G155500 chr1A 274107570 274110883 3313 True 6120.000000 6120 100.000000 1 3314 1 chr1A.!!$R1 3313
1 TraesCS1A01G155500 chr1D 215063639 215067397 3758 True 1502.666667 3783 92.150667 481 3314 3 chr1D.!!$R1 2833
2 TraesCS1A01G155500 chr1B 308380542 308384076 3534 True 1075.000000 3410 92.982000 481 3314 4 chr1B.!!$R1 2833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.036022 AGTTGCACCAAGCTCCTCTC 59.964 55.0 0.0 0.0 45.94 3.2 F
452 453 0.322975 TTGCACCAAGCTCCTCTCTC 59.677 55.0 0.0 0.0 45.94 3.2 F
456 457 0.325203 ACCAAGCTCCTCTCTCCCTC 60.325 60.0 0.0 0.0 0.00 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 2308 0.251209 GTTTGGGGGTGGAGAAGGAC 60.251 60.000 0.00 0.0 0.0 3.85 R
2196 3094 1.066858 ACCATGAAGTACACCTCTGCG 60.067 52.381 0.00 0.0 0.0 5.18 R
2615 3520 3.372025 GCATCTTACCTCCCATGGAAACT 60.372 47.826 15.22 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.698803 CGTTGTCATGTCTTCCCATGA 58.301 47.619 0.00 0.00 46.74 3.07
24 25 2.787473 TCATGTCTTCCCATGACACC 57.213 50.000 0.00 0.00 44.70 4.16
25 26 1.281867 TCATGTCTTCCCATGACACCC 59.718 52.381 0.00 0.00 44.70 4.61
26 27 1.004628 CATGTCTTCCCATGACACCCA 59.995 52.381 0.00 0.00 45.57 4.51
27 28 1.371467 TGTCTTCCCATGACACCCAT 58.629 50.000 0.00 0.00 39.23 4.00
36 37 3.880047 CATGACACCCATGCAATCTTT 57.120 42.857 0.00 0.00 45.25 2.52
37 38 3.777478 CATGACACCCATGCAATCTTTC 58.223 45.455 0.00 0.00 45.25 2.62
38 39 3.159213 TGACACCCATGCAATCTTTCT 57.841 42.857 0.00 0.00 0.00 2.52
39 40 3.084039 TGACACCCATGCAATCTTTCTC 58.916 45.455 0.00 0.00 0.00 2.87
40 41 3.245016 TGACACCCATGCAATCTTTCTCT 60.245 43.478 0.00 0.00 0.00 3.10
41 42 3.760684 GACACCCATGCAATCTTTCTCTT 59.239 43.478 0.00 0.00 0.00 2.85
42 43 3.508793 ACACCCATGCAATCTTTCTCTTG 59.491 43.478 0.00 0.00 0.00 3.02
43 44 2.494870 ACCCATGCAATCTTTCTCTTGC 59.505 45.455 0.00 0.51 46.19 4.01
44 45 2.159142 CCCATGCAATCTTTCTCTTGCC 60.159 50.000 0.00 0.00 45.58 4.52
45 46 2.494471 CCATGCAATCTTTCTCTTGCCA 59.506 45.455 0.00 0.00 45.58 4.92
46 47 3.132289 CCATGCAATCTTTCTCTTGCCAT 59.868 43.478 0.00 0.00 45.58 4.40
47 48 4.382685 CCATGCAATCTTTCTCTTGCCATT 60.383 41.667 0.00 0.00 45.58 3.16
48 49 4.877378 TGCAATCTTTCTCTTGCCATTT 57.123 36.364 4.96 0.00 45.58 2.32
49 50 5.217978 TGCAATCTTTCTCTTGCCATTTT 57.782 34.783 4.96 0.00 45.58 1.82
50 51 5.613329 TGCAATCTTTCTCTTGCCATTTTT 58.387 33.333 4.96 0.00 45.58 1.94
51 52 6.757237 TGCAATCTTTCTCTTGCCATTTTTA 58.243 32.000 4.96 0.00 45.58 1.52
52 53 6.646240 TGCAATCTTTCTCTTGCCATTTTTAC 59.354 34.615 4.96 0.00 45.58 2.01
53 54 6.091305 GCAATCTTTCTCTTGCCATTTTTACC 59.909 38.462 0.00 0.00 41.45 2.85
54 55 5.371115 TCTTTCTCTTGCCATTTTTACCG 57.629 39.130 0.00 0.00 0.00 4.02
55 56 3.569250 TTCTCTTGCCATTTTTACCGC 57.431 42.857 0.00 0.00 0.00 5.68
56 57 1.816224 TCTCTTGCCATTTTTACCGCC 59.184 47.619 0.00 0.00 0.00 6.13
57 58 0.892063 TCTTGCCATTTTTACCGCCC 59.108 50.000 0.00 0.00 0.00 6.13
58 59 0.108377 CTTGCCATTTTTACCGCCCC 60.108 55.000 0.00 0.00 0.00 5.80
59 60 0.832135 TTGCCATTTTTACCGCCCCA 60.832 50.000 0.00 0.00 0.00 4.96
60 61 1.216977 GCCATTTTTACCGCCCCAC 59.783 57.895 0.00 0.00 0.00 4.61
61 62 1.894512 CCATTTTTACCGCCCCACC 59.105 57.895 0.00 0.00 0.00 4.61
62 63 0.900647 CCATTTTTACCGCCCCACCA 60.901 55.000 0.00 0.00 0.00 4.17
63 64 0.969894 CATTTTTACCGCCCCACCAA 59.030 50.000 0.00 0.00 0.00 3.67
64 65 1.344763 CATTTTTACCGCCCCACCAAA 59.655 47.619 0.00 0.00 0.00 3.28
65 66 1.718280 TTTTTACCGCCCCACCAAAT 58.282 45.000 0.00 0.00 0.00 2.32
66 67 2.599408 TTTTACCGCCCCACCAAATA 57.401 45.000 0.00 0.00 0.00 1.40
67 68 1.836802 TTTACCGCCCCACCAAATAC 58.163 50.000 0.00 0.00 0.00 1.89
68 69 0.697079 TTACCGCCCCACCAAATACA 59.303 50.000 0.00 0.00 0.00 2.29
69 70 0.920438 TACCGCCCCACCAAATACAT 59.080 50.000 0.00 0.00 0.00 2.29
70 71 0.395173 ACCGCCCCACCAAATACATC 60.395 55.000 0.00 0.00 0.00 3.06
71 72 1.106944 CCGCCCCACCAAATACATCC 61.107 60.000 0.00 0.00 0.00 3.51
72 73 0.395036 CGCCCCACCAAATACATCCA 60.395 55.000 0.00 0.00 0.00 3.41
73 74 1.859302 GCCCCACCAAATACATCCAA 58.141 50.000 0.00 0.00 0.00 3.53
74 75 1.756538 GCCCCACCAAATACATCCAAG 59.243 52.381 0.00 0.00 0.00 3.61
75 76 2.622977 GCCCCACCAAATACATCCAAGA 60.623 50.000 0.00 0.00 0.00 3.02
76 77 3.707316 CCCCACCAAATACATCCAAGAA 58.293 45.455 0.00 0.00 0.00 2.52
77 78 3.701040 CCCCACCAAATACATCCAAGAAG 59.299 47.826 0.00 0.00 0.00 2.85
78 79 4.569653 CCCCACCAAATACATCCAAGAAGA 60.570 45.833 0.00 0.00 0.00 2.87
79 80 4.641989 CCCACCAAATACATCCAAGAAGAG 59.358 45.833 0.00 0.00 0.00 2.85
80 81 5.500234 CCACCAAATACATCCAAGAAGAGA 58.500 41.667 0.00 0.00 0.00 3.10
81 82 5.945784 CCACCAAATACATCCAAGAAGAGAA 59.054 40.000 0.00 0.00 0.00 2.87
82 83 6.604795 CCACCAAATACATCCAAGAAGAGAAT 59.395 38.462 0.00 0.00 0.00 2.40
83 84 7.123247 CCACCAAATACATCCAAGAAGAGAATT 59.877 37.037 0.00 0.00 0.00 2.17
84 85 9.177608 CACCAAATACATCCAAGAAGAGAATTA 57.822 33.333 0.00 0.00 0.00 1.40
85 86 9.753674 ACCAAATACATCCAAGAAGAGAATTAA 57.246 29.630 0.00 0.00 0.00 1.40
92 93 8.900781 ACATCCAAGAAGAGAATTAATGTGATG 58.099 33.333 0.00 0.00 0.00 3.07
93 94 7.870509 TCCAAGAAGAGAATTAATGTGATGG 57.129 36.000 0.00 0.00 0.00 3.51
94 95 6.319658 TCCAAGAAGAGAATTAATGTGATGGC 59.680 38.462 0.00 0.00 0.00 4.40
95 96 6.095860 CCAAGAAGAGAATTAATGTGATGGCA 59.904 38.462 0.00 0.00 0.00 4.92
96 97 7.201884 CCAAGAAGAGAATTAATGTGATGGCAT 60.202 37.037 0.00 0.00 0.00 4.40
97 98 8.843262 CAAGAAGAGAATTAATGTGATGGCATA 58.157 33.333 0.00 0.00 0.00 3.14
98 99 8.985315 AGAAGAGAATTAATGTGATGGCATAA 57.015 30.769 0.00 0.00 0.00 1.90
99 100 9.412460 AGAAGAGAATTAATGTGATGGCATAAA 57.588 29.630 0.00 0.00 0.00 1.40
100 101 9.455847 GAAGAGAATTAATGTGATGGCATAAAC 57.544 33.333 0.00 2.63 0.00 2.01
101 102 7.945134 AGAGAATTAATGTGATGGCATAAACC 58.055 34.615 0.00 0.00 0.00 3.27
102 103 7.781693 AGAGAATTAATGTGATGGCATAAACCT 59.218 33.333 0.00 0.00 0.00 3.50
103 104 7.945134 AGAATTAATGTGATGGCATAAACCTC 58.055 34.615 0.00 0.00 0.00 3.85
104 105 7.781693 AGAATTAATGTGATGGCATAAACCTCT 59.218 33.333 0.00 0.00 0.00 3.69
105 106 7.902920 ATTAATGTGATGGCATAAACCTCTT 57.097 32.000 0.00 0.00 0.00 2.85
106 107 5.587388 AATGTGATGGCATAAACCTCTTG 57.413 39.130 0.00 0.00 0.00 3.02
107 108 3.355378 TGTGATGGCATAAACCTCTTGG 58.645 45.455 0.00 0.00 39.83 3.61
125 126 8.700973 ACCTCTTGGTAATTTAAAACATGTTGT 58.299 29.630 12.82 9.51 46.43 3.32
139 140 8.630054 AAAACATGTTGTAGAGTAAATAGGCA 57.370 30.769 12.82 0.00 0.00 4.75
140 141 7.611213 AACATGTTGTAGAGTAAATAGGCAC 57.389 36.000 11.07 0.00 0.00 5.01
141 142 6.947464 ACATGTTGTAGAGTAAATAGGCACT 58.053 36.000 0.00 0.00 46.37 4.40
142 143 6.818644 ACATGTTGTAGAGTAAATAGGCACTG 59.181 38.462 0.00 0.00 41.52 3.66
143 144 6.354794 TGTTGTAGAGTAAATAGGCACTGT 57.645 37.500 0.00 0.00 41.52 3.55
144 145 6.395629 TGTTGTAGAGTAAATAGGCACTGTC 58.604 40.000 0.00 0.00 41.52 3.51
145 146 6.210784 TGTTGTAGAGTAAATAGGCACTGTCT 59.789 38.462 0.00 0.00 41.52 3.41
146 147 6.208988 TGTAGAGTAAATAGGCACTGTCTG 57.791 41.667 0.00 0.00 41.52 3.51
147 148 5.949952 TGTAGAGTAAATAGGCACTGTCTGA 59.050 40.000 0.00 0.00 41.52 3.27
148 149 6.436218 TGTAGAGTAAATAGGCACTGTCTGAA 59.564 38.462 0.00 0.00 41.52 3.02
149 150 5.725362 AGAGTAAATAGGCACTGTCTGAAC 58.275 41.667 0.00 0.00 41.52 3.18
150 151 5.246203 AGAGTAAATAGGCACTGTCTGAACA 59.754 40.000 0.00 0.00 41.52 3.18
151 152 5.865085 AGTAAATAGGCACTGTCTGAACAA 58.135 37.500 0.00 0.00 41.52 2.83
152 153 6.476378 AGTAAATAGGCACTGTCTGAACAAT 58.524 36.000 0.00 0.00 41.52 2.71
153 154 7.620880 AGTAAATAGGCACTGTCTGAACAATA 58.379 34.615 0.00 0.00 41.52 1.90
154 155 6.992063 AAATAGGCACTGTCTGAACAATAG 57.008 37.500 0.00 0.00 41.52 1.73
155 156 5.939764 ATAGGCACTGTCTGAACAATAGA 57.060 39.130 0.00 0.00 41.52 1.98
156 157 4.833478 AGGCACTGTCTGAACAATAGAT 57.167 40.909 0.00 0.00 37.18 1.98
157 158 5.171339 AGGCACTGTCTGAACAATAGATT 57.829 39.130 0.00 0.00 37.18 2.40
158 159 4.940046 AGGCACTGTCTGAACAATAGATTG 59.060 41.667 0.61 0.61 39.94 2.67
159 160 5.513788 AGGCACTGTCTGAACAATAGATTGT 60.514 40.000 1.96 1.96 46.16 2.71
160 161 6.295859 AGGCACTGTCTGAACAATAGATTGTA 60.296 38.462 8.27 0.00 44.32 2.41
161 162 7.582242 AGGCACTGTCTGAACAATAGATTGTAT 60.582 37.037 8.27 0.10 44.32 2.29
183 184 9.275572 TGTATTAATACCCCTTTCTCTACTTGT 57.724 33.333 20.35 0.00 32.33 3.16
184 185 9.543783 GTATTAATACCCCTTTCTCTACTTGTG 57.456 37.037 13.73 0.00 0.00 3.33
185 186 2.861147 ACCCCTTTCTCTACTTGTGC 57.139 50.000 0.00 0.00 0.00 4.57
186 187 2.339769 ACCCCTTTCTCTACTTGTGCT 58.660 47.619 0.00 0.00 0.00 4.40
187 188 3.517612 ACCCCTTTCTCTACTTGTGCTA 58.482 45.455 0.00 0.00 0.00 3.49
188 189 3.515901 ACCCCTTTCTCTACTTGTGCTAG 59.484 47.826 0.00 0.00 0.00 3.42
189 190 3.769844 CCCCTTTCTCTACTTGTGCTAGA 59.230 47.826 0.00 0.00 0.00 2.43
190 191 4.142049 CCCCTTTCTCTACTTGTGCTAGAG 60.142 50.000 0.00 1.44 39.02 2.43
191 192 4.464597 CCCTTTCTCTACTTGTGCTAGAGT 59.535 45.833 0.00 0.00 38.84 3.24
192 193 5.652891 CCCTTTCTCTACTTGTGCTAGAGTA 59.347 44.000 0.00 0.00 38.84 2.59
193 194 6.322712 CCCTTTCTCTACTTGTGCTAGAGTAT 59.677 42.308 0.00 0.00 38.84 2.12
194 195 7.199766 CCTTTCTCTACTTGTGCTAGAGTATG 58.800 42.308 0.00 1.59 38.84 2.39
195 196 7.147983 CCTTTCTCTACTTGTGCTAGAGTATGT 60.148 40.741 0.00 0.00 38.84 2.29
196 197 7.704578 TTCTCTACTTGTGCTAGAGTATGTT 57.295 36.000 0.00 0.00 38.84 2.71
197 198 7.704578 TCTCTACTTGTGCTAGAGTATGTTT 57.295 36.000 0.00 0.00 38.84 2.83
198 199 7.763356 TCTCTACTTGTGCTAGAGTATGTTTC 58.237 38.462 0.00 0.00 38.84 2.78
199 200 7.393515 TCTCTACTTGTGCTAGAGTATGTTTCA 59.606 37.037 0.00 0.00 38.84 2.69
200 201 7.313646 TCTACTTGTGCTAGAGTATGTTTCAC 58.686 38.462 0.00 0.00 0.00 3.18
201 202 5.238583 ACTTGTGCTAGAGTATGTTTCACC 58.761 41.667 0.00 0.00 0.00 4.02
202 203 4.202245 TGTGCTAGAGTATGTTTCACCC 57.798 45.455 0.00 0.00 0.00 4.61
203 204 3.580895 TGTGCTAGAGTATGTTTCACCCA 59.419 43.478 0.00 0.00 0.00 4.51
204 205 4.041075 TGTGCTAGAGTATGTTTCACCCAA 59.959 41.667 0.00 0.00 0.00 4.12
205 206 4.392138 GTGCTAGAGTATGTTTCACCCAAC 59.608 45.833 0.00 0.00 0.00 3.77
206 207 3.939592 GCTAGAGTATGTTTCACCCAACC 59.060 47.826 0.00 0.00 0.00 3.77
207 208 4.323562 GCTAGAGTATGTTTCACCCAACCT 60.324 45.833 0.00 0.00 0.00 3.50
208 209 4.724279 AGAGTATGTTTCACCCAACCTT 57.276 40.909 0.00 0.00 0.00 3.50
209 210 4.398319 AGAGTATGTTTCACCCAACCTTG 58.602 43.478 0.00 0.00 0.00 3.61
210 211 4.104102 AGAGTATGTTTCACCCAACCTTGA 59.896 41.667 0.00 0.00 0.00 3.02
211 212 4.798882 AGTATGTTTCACCCAACCTTGAA 58.201 39.130 0.00 0.00 0.00 2.69
212 213 4.583073 AGTATGTTTCACCCAACCTTGAAC 59.417 41.667 0.00 0.00 31.42 3.18
213 214 3.094484 TGTTTCACCCAACCTTGAACT 57.906 42.857 0.00 0.00 31.42 3.01
214 215 3.020984 TGTTTCACCCAACCTTGAACTC 58.979 45.455 0.00 0.00 31.42 3.01
215 216 3.288092 GTTTCACCCAACCTTGAACTCT 58.712 45.455 0.00 0.00 31.42 3.24
216 217 3.662759 TTCACCCAACCTTGAACTCTT 57.337 42.857 0.00 0.00 0.00 2.85
217 218 3.662759 TCACCCAACCTTGAACTCTTT 57.337 42.857 0.00 0.00 0.00 2.52
218 219 3.976015 TCACCCAACCTTGAACTCTTTT 58.024 40.909 0.00 0.00 0.00 2.27
219 220 3.951680 TCACCCAACCTTGAACTCTTTTC 59.048 43.478 0.00 0.00 0.00 2.29
220 221 3.068165 CACCCAACCTTGAACTCTTTTCC 59.932 47.826 0.00 0.00 0.00 3.13
221 222 3.295973 CCCAACCTTGAACTCTTTTCCA 58.704 45.455 0.00 0.00 0.00 3.53
222 223 3.704061 CCCAACCTTGAACTCTTTTCCAA 59.296 43.478 0.00 0.00 0.00 3.53
223 224 4.161377 CCCAACCTTGAACTCTTTTCCAAA 59.839 41.667 0.00 0.00 0.00 3.28
224 225 5.163311 CCCAACCTTGAACTCTTTTCCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
225 226 5.985530 CCAACCTTGAACTCTTTTCCAAATC 59.014 40.000 0.00 0.00 0.00 2.17
226 227 5.791336 ACCTTGAACTCTTTTCCAAATCC 57.209 39.130 0.00 0.00 0.00 3.01
227 228 5.458595 ACCTTGAACTCTTTTCCAAATCCT 58.541 37.500 0.00 0.00 0.00 3.24
228 229 6.610830 ACCTTGAACTCTTTTCCAAATCCTA 58.389 36.000 0.00 0.00 0.00 2.94
229 230 6.490381 ACCTTGAACTCTTTTCCAAATCCTAC 59.510 38.462 0.00 0.00 0.00 3.18
230 231 6.071896 CCTTGAACTCTTTTCCAAATCCTACC 60.072 42.308 0.00 0.00 0.00 3.18
231 232 5.321927 TGAACTCTTTTCCAAATCCTACCC 58.678 41.667 0.00 0.00 0.00 3.69
232 233 5.163034 TGAACTCTTTTCCAAATCCTACCCA 60.163 40.000 0.00 0.00 0.00 4.51
233 234 5.536497 ACTCTTTTCCAAATCCTACCCAT 57.464 39.130 0.00 0.00 0.00 4.00
234 235 6.652205 ACTCTTTTCCAAATCCTACCCATA 57.348 37.500 0.00 0.00 0.00 2.74
235 236 7.039722 ACTCTTTTCCAAATCCTACCCATAA 57.960 36.000 0.00 0.00 0.00 1.90
236 237 7.475299 ACTCTTTTCCAAATCCTACCCATAAA 58.525 34.615 0.00 0.00 0.00 1.40
237 238 7.953493 ACTCTTTTCCAAATCCTACCCATAAAA 59.047 33.333 0.00 0.00 0.00 1.52
238 239 8.728596 TCTTTTCCAAATCCTACCCATAAAAA 57.271 30.769 0.00 0.00 0.00 1.94
259 260 5.671742 AAATTTCAAGGCACCATTTTTCG 57.328 34.783 0.00 0.00 0.00 3.46
260 261 2.147436 TTCAAGGCACCATTTTTCGC 57.853 45.000 0.00 0.00 0.00 4.70
261 262 1.327303 TCAAGGCACCATTTTTCGCT 58.673 45.000 0.00 0.00 0.00 4.93
262 263 1.269448 TCAAGGCACCATTTTTCGCTC 59.731 47.619 0.00 0.00 0.00 5.03
263 264 1.270550 CAAGGCACCATTTTTCGCTCT 59.729 47.619 0.00 0.00 0.00 4.09
264 265 1.620822 AGGCACCATTTTTCGCTCTT 58.379 45.000 0.00 0.00 0.00 2.85
265 266 1.541588 AGGCACCATTTTTCGCTCTTC 59.458 47.619 0.00 0.00 0.00 2.87
266 267 1.402852 GGCACCATTTTTCGCTCTTCC 60.403 52.381 0.00 0.00 0.00 3.46
267 268 1.269448 GCACCATTTTTCGCTCTTCCA 59.731 47.619 0.00 0.00 0.00 3.53
268 269 2.288152 GCACCATTTTTCGCTCTTCCAA 60.288 45.455 0.00 0.00 0.00 3.53
269 270 3.614870 GCACCATTTTTCGCTCTTCCAAT 60.615 43.478 0.00 0.00 0.00 3.16
270 271 4.380444 GCACCATTTTTCGCTCTTCCAATA 60.380 41.667 0.00 0.00 0.00 1.90
271 272 5.679638 GCACCATTTTTCGCTCTTCCAATAT 60.680 40.000 0.00 0.00 0.00 1.28
272 273 5.973565 CACCATTTTTCGCTCTTCCAATATC 59.026 40.000 0.00 0.00 0.00 1.63
273 274 5.888161 ACCATTTTTCGCTCTTCCAATATCT 59.112 36.000 0.00 0.00 0.00 1.98
274 275 6.183360 ACCATTTTTCGCTCTTCCAATATCTG 60.183 38.462 0.00 0.00 0.00 2.90
275 276 6.038603 CCATTTTTCGCTCTTCCAATATCTGA 59.961 38.462 0.00 0.00 0.00 3.27
276 277 7.255381 CCATTTTTCGCTCTTCCAATATCTGAT 60.255 37.037 0.00 0.00 0.00 2.90
277 278 6.609237 TTTTCGCTCTTCCAATATCTGATG 57.391 37.500 0.00 0.00 0.00 3.07
278 279 4.263018 TCGCTCTTCCAATATCTGATGG 57.737 45.455 0.00 0.00 38.09 3.51
279 280 2.740981 CGCTCTTCCAATATCTGATGGC 59.259 50.000 0.00 0.00 36.62 4.40
280 281 3.748083 GCTCTTCCAATATCTGATGGCA 58.252 45.455 0.00 0.00 36.62 4.92
281 282 4.333690 GCTCTTCCAATATCTGATGGCAT 58.666 43.478 0.00 0.00 36.62 4.40
282 283 5.494724 GCTCTTCCAATATCTGATGGCATA 58.505 41.667 0.00 0.00 36.62 3.14
283 284 5.353678 GCTCTTCCAATATCTGATGGCATAC 59.646 44.000 0.00 0.00 36.62 2.39
284 285 5.809001 TCTTCCAATATCTGATGGCATACC 58.191 41.667 0.00 0.00 36.62 2.73
285 286 4.574674 TCCAATATCTGATGGCATACCC 57.425 45.455 0.00 0.00 36.62 3.69
302 303 9.295825 TGGCATACCCAAATACTTATCATTTAG 57.704 33.333 0.00 0.00 41.82 1.85
303 304 9.515226 GGCATACCCAAATACTTATCATTTAGA 57.485 33.333 0.00 0.00 0.00 2.10
324 325 8.853077 TTAGAGATTCATTTGTCACATTCAGT 57.147 30.769 0.00 0.00 0.00 3.41
338 339 6.446781 CACATTCAGTGCCTCTTTGATATT 57.553 37.500 0.00 0.00 42.15 1.28
339 340 7.558161 CACATTCAGTGCCTCTTTGATATTA 57.442 36.000 0.00 0.00 42.15 0.98
340 341 8.162878 CACATTCAGTGCCTCTTTGATATTAT 57.837 34.615 0.00 0.00 42.15 1.28
341 342 8.627403 CACATTCAGTGCCTCTTTGATATTATT 58.373 33.333 0.00 0.00 42.15 1.40
342 343 8.844244 ACATTCAGTGCCTCTTTGATATTATTC 58.156 33.333 0.00 0.00 0.00 1.75
343 344 9.064706 CATTCAGTGCCTCTTTGATATTATTCT 57.935 33.333 0.00 0.00 0.00 2.40
344 345 9.638176 ATTCAGTGCCTCTTTGATATTATTCTT 57.362 29.630 0.00 0.00 0.00 2.52
345 346 8.668510 TCAGTGCCTCTTTGATATTATTCTTC 57.331 34.615 0.00 0.00 0.00 2.87
346 347 8.267183 TCAGTGCCTCTTTGATATTATTCTTCA 58.733 33.333 0.00 0.00 0.00 3.02
347 348 8.341173 CAGTGCCTCTTTGATATTATTCTTCAC 58.659 37.037 0.00 0.00 0.00 3.18
348 349 8.049117 AGTGCCTCTTTGATATTATTCTTCACA 58.951 33.333 0.00 0.00 0.00 3.58
349 350 8.677300 GTGCCTCTTTGATATTATTCTTCACAA 58.323 33.333 0.00 0.00 0.00 3.33
350 351 9.412460 TGCCTCTTTGATATTATTCTTCACAAT 57.588 29.630 0.00 0.00 0.00 2.71
364 365 8.594881 ATTCTTCACAATATCGTTACATCCTC 57.405 34.615 0.00 0.00 0.00 3.71
365 366 7.107639 TCTTCACAATATCGTTACATCCTCA 57.892 36.000 0.00 0.00 0.00 3.86
366 367 7.552459 TCTTCACAATATCGTTACATCCTCAA 58.448 34.615 0.00 0.00 0.00 3.02
367 368 7.491372 TCTTCACAATATCGTTACATCCTCAAC 59.509 37.037 0.00 0.00 0.00 3.18
368 369 6.046593 TCACAATATCGTTACATCCTCAACC 58.953 40.000 0.00 0.00 0.00 3.77
369 370 5.815222 CACAATATCGTTACATCCTCAACCA 59.185 40.000 0.00 0.00 0.00 3.67
370 371 6.315144 CACAATATCGTTACATCCTCAACCAA 59.685 38.462 0.00 0.00 0.00 3.67
371 372 6.882140 ACAATATCGTTACATCCTCAACCAAA 59.118 34.615 0.00 0.00 0.00 3.28
372 373 7.392113 ACAATATCGTTACATCCTCAACCAAAA 59.608 33.333 0.00 0.00 0.00 2.44
373 374 7.931578 ATATCGTTACATCCTCAACCAAAAA 57.068 32.000 0.00 0.00 0.00 1.94
407 408 9.226606 AGATTTTCTAAATTAATGTGTCGTCCA 57.773 29.630 0.00 0.00 0.00 4.02
408 409 9.490663 GATTTTCTAAATTAATGTGTCGTCCAG 57.509 33.333 0.00 0.00 0.00 3.86
409 410 8.610248 TTTTCTAAATTAATGTGTCGTCCAGA 57.390 30.769 0.00 0.00 0.00 3.86
410 411 8.786826 TTTCTAAATTAATGTGTCGTCCAGAT 57.213 30.769 0.00 0.00 0.00 2.90
411 412 7.770801 TCTAAATTAATGTGTCGTCCAGATG 57.229 36.000 0.00 0.00 0.00 2.90
412 413 4.882671 AATTAATGTGTCGTCCAGATGC 57.117 40.909 0.00 0.00 0.00 3.91
413 414 3.326836 TTAATGTGTCGTCCAGATGCA 57.673 42.857 0.00 0.00 0.00 3.96
414 415 1.442769 AATGTGTCGTCCAGATGCAC 58.557 50.000 0.00 7.20 0.00 4.57
415 416 0.737367 ATGTGTCGTCCAGATGCACG 60.737 55.000 0.00 0.00 37.36 5.34
416 417 1.080772 GTGTCGTCCAGATGCACGA 60.081 57.895 0.00 0.00 42.61 4.35
418 419 3.361174 TCGTCCAGATGCACGACA 58.639 55.556 0.00 0.00 40.05 4.35
419 420 1.663173 TCGTCCAGATGCACGACAA 59.337 52.632 0.00 0.00 40.05 3.18
420 421 0.246360 TCGTCCAGATGCACGACAAT 59.754 50.000 0.00 0.00 40.05 2.71
421 422 1.474879 TCGTCCAGATGCACGACAATA 59.525 47.619 0.00 0.00 40.05 1.90
422 423 2.100749 TCGTCCAGATGCACGACAATAT 59.899 45.455 0.00 0.00 40.05 1.28
423 424 3.316868 TCGTCCAGATGCACGACAATATA 59.683 43.478 0.00 0.00 40.05 0.86
424 425 3.670523 CGTCCAGATGCACGACAATATAG 59.329 47.826 0.00 0.00 38.32 1.31
425 426 4.621991 GTCCAGATGCACGACAATATAGT 58.378 43.478 0.00 0.00 0.00 2.12
426 427 5.050490 GTCCAGATGCACGACAATATAGTT 58.950 41.667 0.00 0.00 0.00 2.24
427 428 6.213677 GTCCAGATGCACGACAATATAGTTA 58.786 40.000 0.00 0.00 0.00 2.24
428 429 6.363626 GTCCAGATGCACGACAATATAGTTAG 59.636 42.308 0.00 0.00 0.00 2.34
429 430 6.264518 TCCAGATGCACGACAATATAGTTAGA 59.735 38.462 0.00 0.00 0.00 2.10
430 431 6.923508 CCAGATGCACGACAATATAGTTAGAA 59.076 38.462 0.00 0.00 0.00 2.10
431 432 7.438160 CCAGATGCACGACAATATAGTTAGAAA 59.562 37.037 0.00 0.00 0.00 2.52
432 433 8.483218 CAGATGCACGACAATATAGTTAGAAAG 58.517 37.037 0.00 0.00 0.00 2.62
433 434 8.198109 AGATGCACGACAATATAGTTAGAAAGT 58.802 33.333 0.00 0.00 0.00 2.66
434 435 8.718102 ATGCACGACAATATAGTTAGAAAGTT 57.282 30.769 0.00 0.00 0.00 2.66
435 436 7.959733 TGCACGACAATATAGTTAGAAAGTTG 58.040 34.615 0.00 0.00 0.00 3.16
436 437 6.900299 GCACGACAATATAGTTAGAAAGTTGC 59.100 38.462 0.00 0.00 0.00 4.17
437 438 7.412563 GCACGACAATATAGTTAGAAAGTTGCA 60.413 37.037 0.00 0.00 0.00 4.08
438 439 7.898309 CACGACAATATAGTTAGAAAGTTGCAC 59.102 37.037 0.00 0.00 0.00 4.57
439 440 7.064253 ACGACAATATAGTTAGAAAGTTGCACC 59.936 37.037 0.00 0.00 0.00 5.01
440 441 7.064134 CGACAATATAGTTAGAAAGTTGCACCA 59.936 37.037 0.00 0.00 0.00 4.17
441 442 8.630054 ACAATATAGTTAGAAAGTTGCACCAA 57.370 30.769 0.00 0.00 0.00 3.67
442 443 8.730680 ACAATATAGTTAGAAAGTTGCACCAAG 58.269 33.333 0.00 0.00 0.00 3.61
443 444 3.990318 AGTTAGAAAGTTGCACCAAGC 57.010 42.857 0.00 0.00 45.96 4.01
444 445 3.555966 AGTTAGAAAGTTGCACCAAGCT 58.444 40.909 0.00 0.00 45.94 3.74
445 446 3.565902 AGTTAGAAAGTTGCACCAAGCTC 59.434 43.478 0.00 0.00 45.94 4.09
446 447 1.322442 AGAAAGTTGCACCAAGCTCC 58.678 50.000 0.00 0.00 45.94 4.70
447 448 1.133668 AGAAAGTTGCACCAAGCTCCT 60.134 47.619 0.00 0.00 45.94 3.69
448 449 1.268079 GAAAGTTGCACCAAGCTCCTC 59.732 52.381 0.00 0.00 45.94 3.71
449 450 0.475906 AAGTTGCACCAAGCTCCTCT 59.524 50.000 0.00 0.00 45.94 3.69
450 451 0.036022 AGTTGCACCAAGCTCCTCTC 59.964 55.000 0.00 0.00 45.94 3.20
451 452 0.036022 GTTGCACCAAGCTCCTCTCT 59.964 55.000 0.00 0.00 45.94 3.10
452 453 0.322975 TTGCACCAAGCTCCTCTCTC 59.677 55.000 0.00 0.00 45.94 3.20
453 454 1.220477 GCACCAAGCTCCTCTCTCC 59.780 63.158 0.00 0.00 41.15 3.71
454 455 1.904032 CACCAAGCTCCTCTCTCCC 59.096 63.158 0.00 0.00 0.00 4.30
455 456 0.617249 CACCAAGCTCCTCTCTCCCT 60.617 60.000 0.00 0.00 0.00 4.20
456 457 0.325203 ACCAAGCTCCTCTCTCCCTC 60.325 60.000 0.00 0.00 0.00 4.30
457 458 1.048160 CCAAGCTCCTCTCTCCCTCC 61.048 65.000 0.00 0.00 0.00 4.30
458 459 1.048160 CAAGCTCCTCTCTCCCTCCC 61.048 65.000 0.00 0.00 0.00 4.30
459 460 1.228215 AAGCTCCTCTCTCCCTCCCT 61.228 60.000 0.00 0.00 0.00 4.20
460 461 0.329039 AGCTCCTCTCTCCCTCCCTA 60.329 60.000 0.00 0.00 0.00 3.53
461 462 0.783850 GCTCCTCTCTCCCTCCCTAT 59.216 60.000 0.00 0.00 0.00 2.57
462 463 1.149077 GCTCCTCTCTCCCTCCCTATT 59.851 57.143 0.00 0.00 0.00 1.73
463 464 2.427150 GCTCCTCTCTCCCTCCCTATTT 60.427 54.545 0.00 0.00 0.00 1.40
464 465 3.238597 CTCCTCTCTCCCTCCCTATTTG 58.761 54.545 0.00 0.00 0.00 2.32
465 466 1.696884 CCTCTCTCCCTCCCTATTTGC 59.303 57.143 0.00 0.00 0.00 3.68
466 467 1.696884 CTCTCTCCCTCCCTATTTGCC 59.303 57.143 0.00 0.00 0.00 4.52
467 468 1.295292 TCTCTCCCTCCCTATTTGCCT 59.705 52.381 0.00 0.00 0.00 4.75
468 469 2.131023 CTCTCCCTCCCTATTTGCCTT 58.869 52.381 0.00 0.00 0.00 4.35
469 470 2.511637 CTCTCCCTCCCTATTTGCCTTT 59.488 50.000 0.00 0.00 0.00 3.11
470 471 3.716872 CTCTCCCTCCCTATTTGCCTTTA 59.283 47.826 0.00 0.00 0.00 1.85
471 472 4.116113 TCTCCCTCCCTATTTGCCTTTAA 58.884 43.478 0.00 0.00 0.00 1.52
472 473 4.166144 TCTCCCTCCCTATTTGCCTTTAAG 59.834 45.833 0.00 0.00 0.00 1.85
473 474 4.116113 TCCCTCCCTATTTGCCTTTAAGA 58.884 43.478 0.00 0.00 0.00 2.10
474 475 4.542525 TCCCTCCCTATTTGCCTTTAAGAA 59.457 41.667 0.00 0.00 0.00 2.52
475 476 4.889995 CCCTCCCTATTTGCCTTTAAGAAG 59.110 45.833 0.00 0.00 0.00 2.85
476 477 5.340027 CCCTCCCTATTTGCCTTTAAGAAGA 60.340 44.000 0.00 0.00 34.71 2.87
477 478 6.187682 CCTCCCTATTTGCCTTTAAGAAGAA 58.812 40.000 0.00 0.00 34.71 2.52
478 479 6.095580 CCTCCCTATTTGCCTTTAAGAAGAAC 59.904 42.308 0.00 0.00 34.71 3.01
479 480 6.548321 TCCCTATTTGCCTTTAAGAAGAACA 58.452 36.000 0.00 0.00 34.71 3.18
501 502 5.916883 ACAAGATGTCATTTGCGAAAAGAAG 59.083 36.000 0.00 0.00 0.00 2.85
529 530 0.552848 CTGGGGTTCATAGGTGCCAT 59.447 55.000 0.00 0.00 0.00 4.40
559 560 8.469309 TGAGACCTCAAAGATTTTGAAGAATT 57.531 30.769 7.05 0.00 36.53 2.17
597 598 2.038387 AACAAGCACGACAGACCTTT 57.962 45.000 0.00 0.00 0.00 3.11
599 600 3.188159 ACAAGCACGACAGACCTTTAA 57.812 42.857 0.00 0.00 0.00 1.52
600 601 3.740115 ACAAGCACGACAGACCTTTAAT 58.260 40.909 0.00 0.00 0.00 1.40
607 608 5.460646 CACGACAGACCTTTAATTGCAATT 58.539 37.500 26.72 26.72 0.00 2.32
609 614 7.250569 CACGACAGACCTTTAATTGCAATTAT 58.749 34.615 27.83 15.89 31.47 1.28
658 663 6.771188 AAATAAAGAGATACGATCGCCTTG 57.229 37.500 16.60 0.00 31.15 3.61
665 670 2.394545 TACGATCGCCTTGTCATACG 57.605 50.000 16.60 0.00 0.00 3.06
671 676 1.141019 GCCTTGTCATACGCCTCGA 59.859 57.895 0.00 0.00 0.00 4.04
679 684 4.188462 TGTCATACGCCTCGATGAAATTT 58.812 39.130 0.00 0.00 33.96 1.82
682 687 4.745125 TCATACGCCTCGATGAAATTTCTC 59.255 41.667 18.64 12.19 0.00 2.87
712 717 1.963515 CCCCACAGAAAAGAACCAAGG 59.036 52.381 0.00 0.00 0.00 3.61
713 718 1.341209 CCCACAGAAAAGAACCAAGGC 59.659 52.381 0.00 0.00 0.00 4.35
719 724 4.651045 ACAGAAAAGAACCAAGGCTGAAAT 59.349 37.500 0.00 0.00 0.00 2.17
726 731 6.128138 AGAACCAAGGCTGAAATAGTAGTT 57.872 37.500 0.00 0.00 0.00 2.24
727 732 5.940470 AGAACCAAGGCTGAAATAGTAGTTG 59.060 40.000 0.00 0.00 0.00 3.16
728 733 5.242795 ACCAAGGCTGAAATAGTAGTTGT 57.757 39.130 0.00 0.00 0.00 3.32
735 740 4.932200 GCTGAAATAGTAGTTGTCACTGCT 59.068 41.667 0.00 0.00 46.73 4.24
750 755 7.124573 TGTCACTGCTATAATGGATTGTACT 57.875 36.000 0.00 0.00 0.00 2.73
751 756 7.210174 TGTCACTGCTATAATGGATTGTACTC 58.790 38.462 0.00 0.00 0.00 2.59
752 757 7.147742 TGTCACTGCTATAATGGATTGTACTCA 60.148 37.037 0.00 0.00 0.00 3.41
753 758 7.383572 GTCACTGCTATAATGGATTGTACTCAG 59.616 40.741 0.00 0.00 0.00 3.35
754 759 7.069950 TCACTGCTATAATGGATTGTACTCAGT 59.930 37.037 0.00 0.00 30.12 3.41
755 760 8.360390 CACTGCTATAATGGATTGTACTCAGTA 58.640 37.037 0.00 0.00 29.59 2.74
756 761 8.361139 ACTGCTATAATGGATTGTACTCAGTAC 58.639 37.037 8.15 8.15 39.24 2.73
757 762 7.667557 TGCTATAATGGATTGTACTCAGTACC 58.332 38.462 12.62 0.00 38.14 3.34
758 763 7.097834 GCTATAATGGATTGTACTCAGTACCC 58.902 42.308 12.62 7.11 38.14 3.69
759 764 7.256190 GCTATAATGGATTGTACTCAGTACCCA 60.256 40.741 12.62 12.47 38.14 4.51
760 765 5.772393 AATGGATTGTACTCAGTACCCAA 57.228 39.130 12.62 1.45 38.14 4.12
761 766 4.546829 TGGATTGTACTCAGTACCCAAC 57.453 45.455 12.62 1.69 38.14 3.77
762 767 4.164981 TGGATTGTACTCAGTACCCAACT 58.835 43.478 12.62 0.00 38.14 3.16
767 772 2.814280 ACTCAGTACCCAACTCAACG 57.186 50.000 0.00 0.00 35.76 4.10
830 1715 7.050970 AGAAATCTCTAACCCAAACCAAAAC 57.949 36.000 0.00 0.00 0.00 2.43
1303 2201 2.221299 CGGTCCCCCTTCACTTCCA 61.221 63.158 0.00 0.00 0.00 3.53
1410 2308 3.679980 CCTACCACAACATCTTCTTCACG 59.320 47.826 0.00 0.00 0.00 4.35
1469 2367 4.925861 GCTGCTCCCCTCATCCGC 62.926 72.222 0.00 0.00 0.00 5.54
1887 2785 0.597568 CCAAGCTCATGCCGTTTTCA 59.402 50.000 0.00 0.00 40.80 2.69
1950 2848 3.312973 CAGAGCTTGATGGCTTCTTCATC 59.687 47.826 1.86 0.00 43.20 2.92
2196 3094 0.744771 GCGGGTTCCTCCACTCATTC 60.745 60.000 0.00 0.00 38.11 2.67
2615 3520 2.112190 GGTTGTTTGGTTCCCTTTCCA 58.888 47.619 0.00 0.00 0.00 3.53
2696 3601 5.601313 TGGACTTTATACAGGTCCTATGGTC 59.399 44.000 14.90 0.00 46.76 4.02
2749 3654 2.159707 CCTGTGATGTTTTAGGTTCGCG 60.160 50.000 0.00 0.00 0.00 5.87
2853 3758 1.729586 TCAGTACCCCAGCTTGTTCT 58.270 50.000 0.00 0.00 0.00 3.01
2855 3760 3.450904 TCAGTACCCCAGCTTGTTCTAT 58.549 45.455 0.00 0.00 0.00 1.98
2929 3834 3.008923 TGGCAATGTGTATCTCCAGTTGA 59.991 43.478 0.00 0.00 0.00 3.18
2931 3836 4.036027 GGCAATGTGTATCTCCAGTTGATG 59.964 45.833 0.00 0.00 0.00 3.07
2934 3839 4.206477 TGTGTATCTCCAGTTGATGTGG 57.794 45.455 0.00 0.00 36.28 4.17
2948 3853 6.263842 CAGTTGATGTGGTAGGCATTTATCAT 59.736 38.462 0.00 0.00 0.00 2.45
3052 4005 0.541392 ATGTCTACCAGCATCCGCAA 59.459 50.000 0.00 0.00 42.27 4.85
3132 4085 6.539826 TGCTAGTGGATCACTGAAATATGTTG 59.460 38.462 10.46 0.00 45.01 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.004628 TGGGTGTCATGGGAAGACATG 59.995 52.381 0.00 0.00 46.52 3.21
7 8 1.371467 TGGGTGTCATGGGAAGACAT 58.629 50.000 0.00 0.00 46.52 3.06
8 9 1.371467 ATGGGTGTCATGGGAAGACA 58.629 50.000 0.00 0.00 43.23 3.41
17 18 3.698040 GAGAAAGATTGCATGGGTGTCAT 59.302 43.478 0.00 0.00 36.31 3.06
18 19 3.084039 GAGAAAGATTGCATGGGTGTCA 58.916 45.455 0.00 0.00 0.00 3.58
19 20 3.350833 AGAGAAAGATTGCATGGGTGTC 58.649 45.455 0.00 0.00 0.00 3.67
20 21 3.446442 AGAGAAAGATTGCATGGGTGT 57.554 42.857 0.00 0.00 0.00 4.16
21 22 4.106029 CAAGAGAAAGATTGCATGGGTG 57.894 45.455 0.00 0.00 0.00 4.61
29 30 6.308766 CGGTAAAAATGGCAAGAGAAAGATTG 59.691 38.462 0.00 0.00 0.00 2.67
30 31 6.389906 CGGTAAAAATGGCAAGAGAAAGATT 58.610 36.000 0.00 0.00 0.00 2.40
31 32 5.622233 GCGGTAAAAATGGCAAGAGAAAGAT 60.622 40.000 0.00 0.00 0.00 2.40
32 33 4.320935 GCGGTAAAAATGGCAAGAGAAAGA 60.321 41.667 0.00 0.00 0.00 2.52
33 34 3.920412 GCGGTAAAAATGGCAAGAGAAAG 59.080 43.478 0.00 0.00 0.00 2.62
34 35 3.305744 GGCGGTAAAAATGGCAAGAGAAA 60.306 43.478 0.00 0.00 0.00 2.52
35 36 2.230266 GGCGGTAAAAATGGCAAGAGAA 59.770 45.455 0.00 0.00 0.00 2.87
36 37 1.816224 GGCGGTAAAAATGGCAAGAGA 59.184 47.619 0.00 0.00 0.00 3.10
37 38 1.135112 GGGCGGTAAAAATGGCAAGAG 60.135 52.381 0.00 0.00 0.00 2.85
38 39 0.892063 GGGCGGTAAAAATGGCAAGA 59.108 50.000 0.00 0.00 0.00 3.02
39 40 0.108377 GGGGCGGTAAAAATGGCAAG 60.108 55.000 0.00 0.00 0.00 4.01
40 41 0.832135 TGGGGCGGTAAAAATGGCAA 60.832 50.000 0.00 0.00 0.00 4.52
41 42 1.228894 TGGGGCGGTAAAAATGGCA 60.229 52.632 0.00 0.00 0.00 4.92
42 43 1.216977 GTGGGGCGGTAAAAATGGC 59.783 57.895 0.00 0.00 0.00 4.40
43 44 0.900647 TGGTGGGGCGGTAAAAATGG 60.901 55.000 0.00 0.00 0.00 3.16
44 45 0.969894 TTGGTGGGGCGGTAAAAATG 59.030 50.000 0.00 0.00 0.00 2.32
45 46 1.718280 TTTGGTGGGGCGGTAAAAAT 58.282 45.000 0.00 0.00 0.00 1.82
46 47 1.718280 ATTTGGTGGGGCGGTAAAAA 58.282 45.000 0.00 0.00 0.00 1.94
47 48 2.169330 GTATTTGGTGGGGCGGTAAAA 58.831 47.619 0.00 0.00 0.00 1.52
48 49 1.075050 TGTATTTGGTGGGGCGGTAAA 59.925 47.619 0.00 0.00 0.00 2.01
49 50 0.697079 TGTATTTGGTGGGGCGGTAA 59.303 50.000 0.00 0.00 0.00 2.85
50 51 0.920438 ATGTATTTGGTGGGGCGGTA 59.080 50.000 0.00 0.00 0.00 4.02
51 52 0.395173 GATGTATTTGGTGGGGCGGT 60.395 55.000 0.00 0.00 0.00 5.68
52 53 1.106944 GGATGTATTTGGTGGGGCGG 61.107 60.000 0.00 0.00 0.00 6.13
53 54 0.395036 TGGATGTATTTGGTGGGGCG 60.395 55.000 0.00 0.00 0.00 6.13
54 55 1.756538 CTTGGATGTATTTGGTGGGGC 59.243 52.381 0.00 0.00 0.00 5.80
55 56 3.380471 TCTTGGATGTATTTGGTGGGG 57.620 47.619 0.00 0.00 0.00 4.96
56 57 4.599041 TCTTCTTGGATGTATTTGGTGGG 58.401 43.478 0.00 0.00 0.00 4.61
57 58 5.500234 TCTCTTCTTGGATGTATTTGGTGG 58.500 41.667 0.00 0.00 0.00 4.61
58 59 7.636150 ATTCTCTTCTTGGATGTATTTGGTG 57.364 36.000 0.00 0.00 0.00 4.17
59 60 9.753674 TTAATTCTCTTCTTGGATGTATTTGGT 57.246 29.630 0.00 0.00 0.00 3.67
66 67 8.900781 CATCACATTAATTCTCTTCTTGGATGT 58.099 33.333 0.00 0.00 0.00 3.06
67 68 8.350722 CCATCACATTAATTCTCTTCTTGGATG 58.649 37.037 0.00 0.00 0.00 3.51
68 69 7.014038 GCCATCACATTAATTCTCTTCTTGGAT 59.986 37.037 0.00 0.00 0.00 3.41
69 70 6.319658 GCCATCACATTAATTCTCTTCTTGGA 59.680 38.462 0.00 0.00 0.00 3.53
70 71 6.095860 TGCCATCACATTAATTCTCTTCTTGG 59.904 38.462 0.00 0.00 0.00 3.61
71 72 7.092137 TGCCATCACATTAATTCTCTTCTTG 57.908 36.000 0.00 0.00 0.00 3.02
72 73 7.893124 ATGCCATCACATTAATTCTCTTCTT 57.107 32.000 0.00 0.00 0.00 2.52
73 74 8.985315 TTATGCCATCACATTAATTCTCTTCT 57.015 30.769 0.00 0.00 0.00 2.85
74 75 9.455847 GTTTATGCCATCACATTAATTCTCTTC 57.544 33.333 0.00 0.00 0.00 2.87
75 76 8.416329 GGTTTATGCCATCACATTAATTCTCTT 58.584 33.333 0.00 0.00 0.00 2.85
76 77 7.781693 AGGTTTATGCCATCACATTAATTCTCT 59.218 33.333 0.00 0.00 0.00 3.10
77 78 7.945134 AGGTTTATGCCATCACATTAATTCTC 58.055 34.615 0.00 0.00 0.00 2.87
78 79 7.781693 AGAGGTTTATGCCATCACATTAATTCT 59.218 33.333 0.00 0.00 0.00 2.40
79 80 7.945134 AGAGGTTTATGCCATCACATTAATTC 58.055 34.615 0.00 0.00 0.00 2.17
80 81 7.902920 AGAGGTTTATGCCATCACATTAATT 57.097 32.000 0.00 0.00 0.00 1.40
81 82 7.201938 CCAAGAGGTTTATGCCATCACATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
82 83 6.096705 CCAAGAGGTTTATGCCATCACATTAA 59.903 38.462 0.00 0.00 0.00 1.40
83 84 5.593909 CCAAGAGGTTTATGCCATCACATTA 59.406 40.000 0.00 0.00 0.00 1.90
84 85 4.403432 CCAAGAGGTTTATGCCATCACATT 59.597 41.667 0.00 0.00 0.00 2.71
85 86 3.956199 CCAAGAGGTTTATGCCATCACAT 59.044 43.478 0.00 0.00 0.00 3.21
86 87 3.355378 CCAAGAGGTTTATGCCATCACA 58.645 45.455 0.00 0.00 0.00 3.58
113 114 9.727859 TGCCTATTTACTCTACAACATGTTTTA 57.272 29.630 8.77 6.30 0.00 1.52
114 115 8.512138 GTGCCTATTTACTCTACAACATGTTTT 58.488 33.333 8.77 5.26 0.00 2.43
115 116 7.883311 AGTGCCTATTTACTCTACAACATGTTT 59.117 33.333 8.77 3.54 0.00 2.83
116 117 7.334421 CAGTGCCTATTTACTCTACAACATGTT 59.666 37.037 4.92 4.92 0.00 2.71
117 118 6.818644 CAGTGCCTATTTACTCTACAACATGT 59.181 38.462 0.00 0.00 0.00 3.21
118 119 6.818644 ACAGTGCCTATTTACTCTACAACATG 59.181 38.462 0.00 0.00 0.00 3.21
119 120 6.947464 ACAGTGCCTATTTACTCTACAACAT 58.053 36.000 0.00 0.00 0.00 2.71
120 121 6.210784 AGACAGTGCCTATTTACTCTACAACA 59.789 38.462 0.00 0.00 0.00 3.33
121 122 6.531948 CAGACAGTGCCTATTTACTCTACAAC 59.468 42.308 0.00 0.00 0.00 3.32
122 123 6.436218 TCAGACAGTGCCTATTTACTCTACAA 59.564 38.462 0.00 0.00 0.00 2.41
123 124 5.949952 TCAGACAGTGCCTATTTACTCTACA 59.050 40.000 0.00 0.00 0.00 2.74
124 125 6.452494 TCAGACAGTGCCTATTTACTCTAC 57.548 41.667 0.00 0.00 0.00 2.59
125 126 6.436218 TGTTCAGACAGTGCCTATTTACTCTA 59.564 38.462 0.00 0.00 0.00 2.43
126 127 5.246203 TGTTCAGACAGTGCCTATTTACTCT 59.754 40.000 0.00 0.00 0.00 3.24
127 128 5.479306 TGTTCAGACAGTGCCTATTTACTC 58.521 41.667 0.00 0.00 0.00 2.59
128 129 5.483685 TGTTCAGACAGTGCCTATTTACT 57.516 39.130 0.00 0.00 0.00 2.24
129 130 6.743575 ATTGTTCAGACAGTGCCTATTTAC 57.256 37.500 0.00 0.00 37.04 2.01
130 131 7.847096 TCTATTGTTCAGACAGTGCCTATTTA 58.153 34.615 0.00 0.00 37.04 1.40
131 132 6.711277 TCTATTGTTCAGACAGTGCCTATTT 58.289 36.000 0.00 0.00 37.04 1.40
132 133 6.299805 TCTATTGTTCAGACAGTGCCTATT 57.700 37.500 0.00 0.00 37.04 1.73
133 134 5.939764 TCTATTGTTCAGACAGTGCCTAT 57.060 39.130 0.00 0.00 37.04 2.57
134 135 5.939764 ATCTATTGTTCAGACAGTGCCTA 57.060 39.130 0.00 0.00 37.04 3.93
135 136 4.833478 ATCTATTGTTCAGACAGTGCCT 57.167 40.909 0.00 0.00 37.04 4.75
136 137 5.227238 CAATCTATTGTTCAGACAGTGCC 57.773 43.478 0.00 0.00 37.04 5.01
157 158 9.275572 ACAAGTAGAGAAAGGGGTATTAATACA 57.724 33.333 23.59 0.31 34.98 2.29
158 159 9.543783 CACAAGTAGAGAAAGGGGTATTAATAC 57.456 37.037 15.98 15.98 0.00 1.89
159 160 8.208903 GCACAAGTAGAGAAAGGGGTATTAATA 58.791 37.037 0.00 0.00 0.00 0.98
160 161 7.054751 GCACAAGTAGAGAAAGGGGTATTAAT 58.945 38.462 0.00 0.00 0.00 1.40
161 162 6.214819 AGCACAAGTAGAGAAAGGGGTATTAA 59.785 38.462 0.00 0.00 0.00 1.40
162 163 5.724854 AGCACAAGTAGAGAAAGGGGTATTA 59.275 40.000 0.00 0.00 0.00 0.98
163 164 4.536489 AGCACAAGTAGAGAAAGGGGTATT 59.464 41.667 0.00 0.00 0.00 1.89
164 165 4.104831 AGCACAAGTAGAGAAAGGGGTAT 58.895 43.478 0.00 0.00 0.00 2.73
165 166 3.517612 AGCACAAGTAGAGAAAGGGGTA 58.482 45.455 0.00 0.00 0.00 3.69
166 167 2.339769 AGCACAAGTAGAGAAAGGGGT 58.660 47.619 0.00 0.00 0.00 4.95
167 168 3.769844 TCTAGCACAAGTAGAGAAAGGGG 59.230 47.826 0.00 0.00 0.00 4.79
168 169 4.464597 ACTCTAGCACAAGTAGAGAAAGGG 59.535 45.833 12.50 0.00 44.39 3.95
169 170 5.652994 ACTCTAGCACAAGTAGAGAAAGG 57.347 43.478 12.50 0.00 44.39 3.11
170 171 7.767261 ACATACTCTAGCACAAGTAGAGAAAG 58.233 38.462 12.50 5.38 44.39 2.62
171 172 7.704578 ACATACTCTAGCACAAGTAGAGAAA 57.295 36.000 12.50 2.84 44.39 2.52
172 173 7.704578 AACATACTCTAGCACAAGTAGAGAA 57.295 36.000 12.50 0.00 44.39 2.87
173 174 7.393515 TGAAACATACTCTAGCACAAGTAGAGA 59.606 37.037 12.50 0.00 44.39 3.10
174 175 7.486551 GTGAAACATACTCTAGCACAAGTAGAG 59.513 40.741 5.61 5.61 42.29 2.43
175 176 7.313646 GTGAAACATACTCTAGCACAAGTAGA 58.686 38.462 0.00 0.00 36.32 2.59
176 177 6.531948 GGTGAAACATACTCTAGCACAAGTAG 59.468 42.308 0.00 0.00 39.98 2.57
177 178 6.395629 GGTGAAACATACTCTAGCACAAGTA 58.604 40.000 0.00 0.00 39.98 2.24
178 179 5.238583 GGTGAAACATACTCTAGCACAAGT 58.761 41.667 0.00 0.00 39.98 3.16
179 180 4.631813 GGGTGAAACATACTCTAGCACAAG 59.368 45.833 0.00 0.00 39.98 3.16
180 181 4.041075 TGGGTGAAACATACTCTAGCACAA 59.959 41.667 0.00 0.00 39.98 3.33
181 182 3.580895 TGGGTGAAACATACTCTAGCACA 59.419 43.478 0.00 0.00 39.98 4.57
182 183 4.202245 TGGGTGAAACATACTCTAGCAC 57.798 45.455 0.00 0.00 39.98 4.40
183 184 4.564821 GGTTGGGTGAAACATACTCTAGCA 60.565 45.833 0.00 0.00 39.98 3.49
184 185 3.939592 GGTTGGGTGAAACATACTCTAGC 59.060 47.826 0.00 0.00 39.98 3.42
185 186 5.422214 AGGTTGGGTGAAACATACTCTAG 57.578 43.478 0.00 0.00 39.98 2.43
186 187 5.308497 TCAAGGTTGGGTGAAACATACTCTA 59.692 40.000 0.00 0.00 39.98 2.43
187 188 4.104102 TCAAGGTTGGGTGAAACATACTCT 59.896 41.667 0.00 0.00 39.98 3.24
188 189 4.394729 TCAAGGTTGGGTGAAACATACTC 58.605 43.478 0.00 0.00 39.98 2.59
189 190 4.447138 TCAAGGTTGGGTGAAACATACT 57.553 40.909 0.00 0.00 39.98 2.12
190 191 4.583073 AGTTCAAGGTTGGGTGAAACATAC 59.417 41.667 0.00 0.00 39.98 2.39
191 192 4.798882 AGTTCAAGGTTGGGTGAAACATA 58.201 39.130 0.00 0.00 39.98 2.29
192 193 3.636764 GAGTTCAAGGTTGGGTGAAACAT 59.363 43.478 0.00 0.00 39.98 2.71
193 194 3.020984 GAGTTCAAGGTTGGGTGAAACA 58.979 45.455 0.00 0.00 39.98 2.83
194 195 3.288092 AGAGTTCAAGGTTGGGTGAAAC 58.712 45.455 0.00 0.00 35.60 2.78
195 196 3.662759 AGAGTTCAAGGTTGGGTGAAA 57.337 42.857 0.00 0.00 35.60 2.69
196 197 3.662759 AAGAGTTCAAGGTTGGGTGAA 57.337 42.857 0.00 0.00 0.00 3.18
197 198 3.662759 AAAGAGTTCAAGGTTGGGTGA 57.337 42.857 0.00 0.00 0.00 4.02
198 199 3.068165 GGAAAAGAGTTCAAGGTTGGGTG 59.932 47.826 0.00 0.00 0.00 4.61
199 200 3.296854 GGAAAAGAGTTCAAGGTTGGGT 58.703 45.455 0.00 0.00 0.00 4.51
200 201 3.295973 TGGAAAAGAGTTCAAGGTTGGG 58.704 45.455 0.00 0.00 0.00 4.12
201 202 5.337578 TTTGGAAAAGAGTTCAAGGTTGG 57.662 39.130 0.00 0.00 0.00 3.77
202 203 5.985530 GGATTTGGAAAAGAGTTCAAGGTTG 59.014 40.000 0.00 0.00 0.00 3.77
203 204 5.899547 AGGATTTGGAAAAGAGTTCAAGGTT 59.100 36.000 0.00 0.00 0.00 3.50
204 205 5.458595 AGGATTTGGAAAAGAGTTCAAGGT 58.541 37.500 0.00 0.00 0.00 3.50
205 206 6.071896 GGTAGGATTTGGAAAAGAGTTCAAGG 60.072 42.308 0.00 0.00 0.00 3.61
206 207 6.071896 GGGTAGGATTTGGAAAAGAGTTCAAG 60.072 42.308 0.00 0.00 0.00 3.02
207 208 5.773176 GGGTAGGATTTGGAAAAGAGTTCAA 59.227 40.000 0.00 0.00 0.00 2.69
208 209 5.163034 TGGGTAGGATTTGGAAAAGAGTTCA 60.163 40.000 0.00 0.00 0.00 3.18
209 210 5.321927 TGGGTAGGATTTGGAAAAGAGTTC 58.678 41.667 0.00 0.00 0.00 3.01
210 211 5.333566 TGGGTAGGATTTGGAAAAGAGTT 57.666 39.130 0.00 0.00 0.00 3.01
211 212 5.536497 ATGGGTAGGATTTGGAAAAGAGT 57.464 39.130 0.00 0.00 0.00 3.24
212 213 7.954666 TTTATGGGTAGGATTTGGAAAAGAG 57.045 36.000 0.00 0.00 0.00 2.85
213 214 8.728596 TTTTTATGGGTAGGATTTGGAAAAGA 57.271 30.769 0.00 0.00 0.00 2.52
235 236 6.493978 CGAAAAATGGTGCCTTGAAATTTTT 58.506 32.000 4.57 4.57 40.98 1.94
236 237 5.505489 GCGAAAAATGGTGCCTTGAAATTTT 60.505 36.000 0.00 0.00 33.13 1.82
237 238 4.024133 GCGAAAAATGGTGCCTTGAAATTT 60.024 37.500 0.00 0.00 0.00 1.82
238 239 3.498018 GCGAAAAATGGTGCCTTGAAATT 59.502 39.130 0.00 0.00 0.00 1.82
239 240 3.066380 GCGAAAAATGGTGCCTTGAAAT 58.934 40.909 0.00 0.00 0.00 2.17
240 241 2.102252 AGCGAAAAATGGTGCCTTGAAA 59.898 40.909 0.00 0.00 0.00 2.69
241 242 1.686052 AGCGAAAAATGGTGCCTTGAA 59.314 42.857 0.00 0.00 0.00 2.69
242 243 1.269448 GAGCGAAAAATGGTGCCTTGA 59.731 47.619 0.00 0.00 0.00 3.02
243 244 1.270550 AGAGCGAAAAATGGTGCCTTG 59.729 47.619 0.00 0.00 0.00 3.61
244 245 1.620822 AGAGCGAAAAATGGTGCCTT 58.379 45.000 0.00 0.00 0.00 4.35
245 246 1.541588 GAAGAGCGAAAAATGGTGCCT 59.458 47.619 0.00 0.00 0.00 4.75
246 247 1.402852 GGAAGAGCGAAAAATGGTGCC 60.403 52.381 0.00 0.00 0.00 5.01
247 248 1.269448 TGGAAGAGCGAAAAATGGTGC 59.731 47.619 0.00 0.00 0.00 5.01
248 249 3.641437 TTGGAAGAGCGAAAAATGGTG 57.359 42.857 0.00 0.00 0.00 4.17
249 250 5.888161 AGATATTGGAAGAGCGAAAAATGGT 59.112 36.000 0.00 0.00 0.00 3.55
250 251 6.038603 TCAGATATTGGAAGAGCGAAAAATGG 59.961 38.462 0.00 0.00 0.00 3.16
251 252 7.019774 TCAGATATTGGAAGAGCGAAAAATG 57.980 36.000 0.00 0.00 0.00 2.32
252 253 7.255381 CCATCAGATATTGGAAGAGCGAAAAAT 60.255 37.037 0.00 0.00 34.81 1.82
253 254 6.038603 CCATCAGATATTGGAAGAGCGAAAAA 59.961 38.462 0.00 0.00 34.81 1.94
254 255 5.528690 CCATCAGATATTGGAAGAGCGAAAA 59.471 40.000 0.00 0.00 34.81 2.29
255 256 5.059161 CCATCAGATATTGGAAGAGCGAAA 58.941 41.667 0.00 0.00 34.81 3.46
256 257 4.635223 CCATCAGATATTGGAAGAGCGAA 58.365 43.478 0.00 0.00 34.81 4.70
257 258 3.555795 GCCATCAGATATTGGAAGAGCGA 60.556 47.826 0.00 0.00 34.81 4.93
258 259 2.740981 GCCATCAGATATTGGAAGAGCG 59.259 50.000 0.00 0.00 34.81 5.03
259 260 3.748083 TGCCATCAGATATTGGAAGAGC 58.252 45.455 0.00 0.00 34.81 4.09
260 261 5.879223 GGTATGCCATCAGATATTGGAAGAG 59.121 44.000 0.00 0.00 34.81 2.85
261 262 5.280676 GGGTATGCCATCAGATATTGGAAGA 60.281 44.000 1.04 0.00 34.81 2.87
262 263 4.946157 GGGTATGCCATCAGATATTGGAAG 59.054 45.833 1.04 0.00 34.81 3.46
263 264 4.353489 TGGGTATGCCATCAGATATTGGAA 59.647 41.667 1.04 0.00 34.81 3.53
264 265 3.915711 TGGGTATGCCATCAGATATTGGA 59.084 43.478 1.04 0.00 34.81 3.53
265 266 4.305539 TGGGTATGCCATCAGATATTGG 57.694 45.455 1.04 0.00 36.17 3.16
266 267 6.845758 ATTTGGGTATGCCATCAGATATTG 57.154 37.500 1.04 0.00 36.17 1.90
267 268 7.702785 AGTATTTGGGTATGCCATCAGATATT 58.297 34.615 1.04 0.00 36.17 1.28
268 269 7.276088 AGTATTTGGGTATGCCATCAGATAT 57.724 36.000 1.04 0.00 36.17 1.63
269 270 6.702449 AGTATTTGGGTATGCCATCAGATA 57.298 37.500 1.04 0.00 36.17 1.98
270 271 5.589367 AGTATTTGGGTATGCCATCAGAT 57.411 39.130 1.04 0.00 36.17 2.90
271 272 5.387113 AAGTATTTGGGTATGCCATCAGA 57.613 39.130 1.04 0.00 36.17 3.27
272 273 6.942005 TGATAAGTATTTGGGTATGCCATCAG 59.058 38.462 1.04 0.00 36.17 2.90
273 274 6.846988 TGATAAGTATTTGGGTATGCCATCA 58.153 36.000 1.04 0.00 36.17 3.07
274 275 7.944729 ATGATAAGTATTTGGGTATGCCATC 57.055 36.000 1.04 0.00 36.17 3.51
275 276 8.725606 AAATGATAAGTATTTGGGTATGCCAT 57.274 30.769 1.04 0.00 36.17 4.40
276 277 9.295825 CTAAATGATAAGTATTTGGGTATGCCA 57.704 33.333 1.04 0.00 36.17 4.92
277 278 9.515226 TCTAAATGATAAGTATTTGGGTATGCC 57.485 33.333 0.00 0.00 30.00 4.40
298 299 9.288576 ACTGAATGTGACAAATGAATCTCTAAA 57.711 29.630 0.00 0.00 0.00 1.85
299 300 8.853077 ACTGAATGTGACAAATGAATCTCTAA 57.147 30.769 0.00 0.00 0.00 2.10
316 317 8.757982 AATAATATCAAAGAGGCACTGAATGT 57.242 30.769 0.00 0.00 41.55 2.71
317 318 9.064706 AGAATAATATCAAAGAGGCACTGAATG 57.935 33.333 0.00 0.00 41.55 2.67
318 319 9.638176 AAGAATAATATCAAAGAGGCACTGAAT 57.362 29.630 0.00 0.00 41.55 2.57
319 320 9.113838 GAAGAATAATATCAAAGAGGCACTGAA 57.886 33.333 0.00 0.00 41.55 3.02
320 321 8.267183 TGAAGAATAATATCAAAGAGGCACTGA 58.733 33.333 0.00 0.00 41.55 3.41
321 322 8.341173 GTGAAGAATAATATCAAAGAGGCACTG 58.659 37.037 0.00 0.00 41.55 3.66
323 324 8.213518 TGTGAAGAATAATATCAAAGAGGCAC 57.786 34.615 0.00 0.00 0.00 5.01
324 325 8.806429 TTGTGAAGAATAATATCAAAGAGGCA 57.194 30.769 0.00 0.00 0.00 4.75
338 339 9.692749 GAGGATGTAACGATATTGTGAAGAATA 57.307 33.333 0.00 0.00 0.00 1.75
339 340 8.204160 TGAGGATGTAACGATATTGTGAAGAAT 58.796 33.333 0.00 0.00 0.00 2.40
340 341 7.552459 TGAGGATGTAACGATATTGTGAAGAA 58.448 34.615 0.00 0.00 0.00 2.52
341 342 7.107639 TGAGGATGTAACGATATTGTGAAGA 57.892 36.000 0.00 0.00 0.00 2.87
342 343 7.254455 GGTTGAGGATGTAACGATATTGTGAAG 60.254 40.741 0.00 0.00 0.00 3.02
343 344 6.537301 GGTTGAGGATGTAACGATATTGTGAA 59.463 38.462 0.00 0.00 0.00 3.18
344 345 6.046593 GGTTGAGGATGTAACGATATTGTGA 58.953 40.000 0.00 0.00 0.00 3.58
345 346 5.815222 TGGTTGAGGATGTAACGATATTGTG 59.185 40.000 0.00 0.00 0.00 3.33
346 347 5.984725 TGGTTGAGGATGTAACGATATTGT 58.015 37.500 0.00 0.00 0.00 2.71
347 348 6.918892 TTGGTTGAGGATGTAACGATATTG 57.081 37.500 0.00 0.00 0.00 1.90
348 349 7.931578 TTTTGGTTGAGGATGTAACGATATT 57.068 32.000 0.00 0.00 0.00 1.28
349 350 7.931578 TTTTTGGTTGAGGATGTAACGATAT 57.068 32.000 0.00 0.00 0.00 1.63
381 382 9.226606 TGGACGACACATTAATTTAGAAAATCT 57.773 29.630 0.00 0.00 0.00 2.40
382 383 9.490663 CTGGACGACACATTAATTTAGAAAATC 57.509 33.333 0.00 0.00 0.00 2.17
383 384 9.226606 TCTGGACGACACATTAATTTAGAAAAT 57.773 29.630 0.00 0.00 0.00 1.82
384 385 8.610248 TCTGGACGACACATTAATTTAGAAAA 57.390 30.769 0.00 0.00 0.00 2.29
385 386 8.664798 CATCTGGACGACACATTAATTTAGAAA 58.335 33.333 0.00 0.00 0.00 2.52
386 387 7.201609 GCATCTGGACGACACATTAATTTAGAA 60.202 37.037 0.00 0.00 0.00 2.10
387 388 6.257849 GCATCTGGACGACACATTAATTTAGA 59.742 38.462 0.00 0.00 0.00 2.10
388 389 6.037062 TGCATCTGGACGACACATTAATTTAG 59.963 38.462 0.00 0.00 0.00 1.85
389 390 5.877564 TGCATCTGGACGACACATTAATTTA 59.122 36.000 0.00 0.00 0.00 1.40
390 391 4.699735 TGCATCTGGACGACACATTAATTT 59.300 37.500 0.00 0.00 0.00 1.82
391 392 4.094887 GTGCATCTGGACGACACATTAATT 59.905 41.667 0.00 0.00 0.00 1.40
392 393 3.623060 GTGCATCTGGACGACACATTAAT 59.377 43.478 0.00 0.00 0.00 1.40
393 394 3.000041 GTGCATCTGGACGACACATTAA 59.000 45.455 0.00 0.00 0.00 1.40
394 395 2.616960 GTGCATCTGGACGACACATTA 58.383 47.619 0.00 0.00 0.00 1.90
395 396 1.442769 GTGCATCTGGACGACACATT 58.557 50.000 0.00 0.00 0.00 2.71
396 397 3.143675 GTGCATCTGGACGACACAT 57.856 52.632 0.00 0.00 0.00 3.21
397 398 4.673403 GTGCATCTGGACGACACA 57.327 55.556 0.00 0.00 0.00 3.72
403 404 4.621991 ACTATATTGTCGTGCATCTGGAC 58.378 43.478 0.00 0.00 0.00 4.02
404 405 4.937201 ACTATATTGTCGTGCATCTGGA 57.063 40.909 0.00 0.00 0.00 3.86
405 406 6.447162 TCTAACTATATTGTCGTGCATCTGG 58.553 40.000 0.00 0.00 0.00 3.86
406 407 7.930513 TTCTAACTATATTGTCGTGCATCTG 57.069 36.000 0.00 0.00 0.00 2.90
407 408 8.198109 ACTTTCTAACTATATTGTCGTGCATCT 58.802 33.333 0.00 0.00 0.00 2.90
408 409 8.354011 ACTTTCTAACTATATTGTCGTGCATC 57.646 34.615 0.00 0.00 0.00 3.91
409 410 8.604035 CAACTTTCTAACTATATTGTCGTGCAT 58.396 33.333 0.00 0.00 0.00 3.96
410 411 7.412563 GCAACTTTCTAACTATATTGTCGTGCA 60.413 37.037 0.00 0.00 0.00 4.57
411 412 6.900299 GCAACTTTCTAACTATATTGTCGTGC 59.100 38.462 0.00 0.00 0.00 5.34
412 413 7.898309 GTGCAACTTTCTAACTATATTGTCGTG 59.102 37.037 0.00 0.00 0.00 4.35
413 414 7.064253 GGTGCAACTTTCTAACTATATTGTCGT 59.936 37.037 0.00 0.00 36.74 4.34
414 415 7.064134 TGGTGCAACTTTCTAACTATATTGTCG 59.936 37.037 2.04 0.00 36.74 4.35
415 416 8.263940 TGGTGCAACTTTCTAACTATATTGTC 57.736 34.615 2.04 0.00 36.74 3.18
416 417 8.630054 TTGGTGCAACTTTCTAACTATATTGT 57.370 30.769 2.04 0.00 36.74 2.71
417 418 7.698130 GCTTGGTGCAACTTTCTAACTATATTG 59.302 37.037 2.04 0.00 42.31 1.90
418 419 7.611855 AGCTTGGTGCAACTTTCTAACTATATT 59.388 33.333 2.04 0.00 45.94 1.28
419 420 7.112779 AGCTTGGTGCAACTTTCTAACTATAT 58.887 34.615 2.04 0.00 45.94 0.86
420 421 6.472887 AGCTTGGTGCAACTTTCTAACTATA 58.527 36.000 2.04 0.00 45.94 1.31
421 422 5.316987 AGCTTGGTGCAACTTTCTAACTAT 58.683 37.500 2.04 0.00 45.94 2.12
422 423 4.714632 AGCTTGGTGCAACTTTCTAACTA 58.285 39.130 2.04 0.00 45.94 2.24
423 424 3.555966 AGCTTGGTGCAACTTTCTAACT 58.444 40.909 2.04 0.00 45.94 2.24
424 425 3.304726 GGAGCTTGGTGCAACTTTCTAAC 60.305 47.826 2.04 0.00 45.94 2.34
425 426 2.884639 GGAGCTTGGTGCAACTTTCTAA 59.115 45.455 2.04 0.00 45.94 2.10
426 427 2.106511 AGGAGCTTGGTGCAACTTTCTA 59.893 45.455 2.04 0.00 45.94 2.10
427 428 1.133668 AGGAGCTTGGTGCAACTTTCT 60.134 47.619 2.04 0.00 45.94 2.52
428 429 1.268079 GAGGAGCTTGGTGCAACTTTC 59.732 52.381 2.04 0.00 45.94 2.62
429 430 1.133668 AGAGGAGCTTGGTGCAACTTT 60.134 47.619 2.04 0.00 45.94 2.66
430 431 0.475906 AGAGGAGCTTGGTGCAACTT 59.524 50.000 2.04 0.00 45.94 2.66
431 432 0.036022 GAGAGGAGCTTGGTGCAACT 59.964 55.000 2.04 0.00 45.94 3.16
432 433 0.036022 AGAGAGGAGCTTGGTGCAAC 59.964 55.000 0.00 0.00 45.94 4.17
433 434 0.322975 GAGAGAGGAGCTTGGTGCAA 59.677 55.000 0.00 0.00 45.94 4.08
434 435 1.548357 GGAGAGAGGAGCTTGGTGCA 61.548 60.000 0.00 0.00 45.94 4.57
435 436 1.220477 GGAGAGAGGAGCTTGGTGC 59.780 63.158 0.00 0.00 43.29 5.01
436 437 0.617249 AGGGAGAGAGGAGCTTGGTG 60.617 60.000 0.00 0.00 0.00 4.17
437 438 0.325203 GAGGGAGAGAGGAGCTTGGT 60.325 60.000 0.00 0.00 0.00 3.67
438 439 1.048160 GGAGGGAGAGAGGAGCTTGG 61.048 65.000 0.00 0.00 0.00 3.61
439 440 1.048160 GGGAGGGAGAGAGGAGCTTG 61.048 65.000 0.00 0.00 0.00 4.01
440 441 1.228215 AGGGAGGGAGAGAGGAGCTT 61.228 60.000 0.00 0.00 0.00 3.74
441 442 0.329039 TAGGGAGGGAGAGAGGAGCT 60.329 60.000 0.00 0.00 0.00 4.09
442 443 0.783850 ATAGGGAGGGAGAGAGGAGC 59.216 60.000 0.00 0.00 0.00 4.70
443 444 3.238597 CAAATAGGGAGGGAGAGAGGAG 58.761 54.545 0.00 0.00 0.00 3.69
444 445 2.694303 GCAAATAGGGAGGGAGAGAGGA 60.694 54.545 0.00 0.00 0.00 3.71
445 446 1.696884 GCAAATAGGGAGGGAGAGAGG 59.303 57.143 0.00 0.00 0.00 3.69
446 447 1.696884 GGCAAATAGGGAGGGAGAGAG 59.303 57.143 0.00 0.00 0.00 3.20
447 448 1.295292 AGGCAAATAGGGAGGGAGAGA 59.705 52.381 0.00 0.00 0.00 3.10
448 449 1.813102 AGGCAAATAGGGAGGGAGAG 58.187 55.000 0.00 0.00 0.00 3.20
449 450 2.286935 AAGGCAAATAGGGAGGGAGA 57.713 50.000 0.00 0.00 0.00 3.71
450 451 4.166144 TCTTAAAGGCAAATAGGGAGGGAG 59.834 45.833 0.00 0.00 0.00 4.30
451 452 4.116113 TCTTAAAGGCAAATAGGGAGGGA 58.884 43.478 0.00 0.00 0.00 4.20
452 453 4.519906 TCTTAAAGGCAAATAGGGAGGG 57.480 45.455 0.00 0.00 0.00 4.30
453 454 5.755849 TCTTCTTAAAGGCAAATAGGGAGG 58.244 41.667 0.00 0.00 33.03 4.30
454 455 6.659242 TGTTCTTCTTAAAGGCAAATAGGGAG 59.341 38.462 0.00 0.00 33.03 4.30
455 456 6.548321 TGTTCTTCTTAAAGGCAAATAGGGA 58.452 36.000 0.00 0.00 33.03 4.20
456 457 6.834168 TGTTCTTCTTAAAGGCAAATAGGG 57.166 37.500 0.00 0.00 33.03 3.53
457 458 8.110860 TCTTGTTCTTCTTAAAGGCAAATAGG 57.889 34.615 0.00 0.00 32.01 2.57
458 459 9.565213 CATCTTGTTCTTCTTAAAGGCAAATAG 57.435 33.333 0.00 0.00 32.01 1.73
459 460 9.077885 ACATCTTGTTCTTCTTAAAGGCAAATA 57.922 29.630 0.00 0.00 32.01 1.40
460 461 7.955918 ACATCTTGTTCTTCTTAAAGGCAAAT 58.044 30.769 0.00 0.00 32.01 2.32
461 462 7.068103 TGACATCTTGTTCTTCTTAAAGGCAAA 59.932 33.333 0.00 0.00 32.01 3.68
462 463 6.545666 TGACATCTTGTTCTTCTTAAAGGCAA 59.454 34.615 0.00 0.00 33.03 4.52
463 464 6.061441 TGACATCTTGTTCTTCTTAAAGGCA 58.939 36.000 0.00 0.00 33.03 4.75
464 465 6.560253 TGACATCTTGTTCTTCTTAAAGGC 57.440 37.500 0.00 0.00 33.03 4.35
465 466 9.403110 CAAATGACATCTTGTTCTTCTTAAAGG 57.597 33.333 0.00 0.00 33.03 3.11
466 467 8.909671 GCAAATGACATCTTGTTCTTCTTAAAG 58.090 33.333 10.19 0.00 0.00 1.85
467 468 7.591057 CGCAAATGACATCTTGTTCTTCTTAAA 59.409 33.333 10.19 0.00 0.00 1.52
468 469 7.041440 TCGCAAATGACATCTTGTTCTTCTTAA 60.041 33.333 10.19 0.00 0.00 1.85
469 470 6.426633 TCGCAAATGACATCTTGTTCTTCTTA 59.573 34.615 10.19 0.00 0.00 2.10
470 471 5.239306 TCGCAAATGACATCTTGTTCTTCTT 59.761 36.000 10.19 0.00 0.00 2.52
471 472 4.756642 TCGCAAATGACATCTTGTTCTTCT 59.243 37.500 10.19 0.00 0.00 2.85
472 473 5.034554 TCGCAAATGACATCTTGTTCTTC 57.965 39.130 10.19 0.00 0.00 2.87
473 474 5.437289 TTCGCAAATGACATCTTGTTCTT 57.563 34.783 10.19 0.00 0.00 2.52
474 475 5.437289 TTTCGCAAATGACATCTTGTTCT 57.563 34.783 10.19 0.00 0.00 3.01
475 476 5.914635 TCTTTTCGCAAATGACATCTTGTTC 59.085 36.000 10.19 0.00 0.00 3.18
476 477 5.830912 TCTTTTCGCAAATGACATCTTGTT 58.169 33.333 10.19 0.00 0.00 2.83
477 478 5.437289 TCTTTTCGCAAATGACATCTTGT 57.563 34.783 10.19 0.00 0.00 3.16
478 479 6.144854 TCTTCTTTTCGCAAATGACATCTTG 58.855 36.000 0.00 0.00 0.00 3.02
479 480 6.317789 TCTTCTTTTCGCAAATGACATCTT 57.682 33.333 0.00 0.00 0.00 2.40
501 502 4.141390 ACCTATGAACCCCAGTCAATCATC 60.141 45.833 0.00 0.00 33.17 2.92
639 644 3.130516 TGACAAGGCGATCGTATCTCTTT 59.869 43.478 17.81 0.00 0.00 2.52
649 654 0.249489 AGGCGTATGACAAGGCGATC 60.249 55.000 0.00 0.00 36.28 3.69
653 658 0.249489 ATCGAGGCGTATGACAAGGC 60.249 55.000 0.00 0.00 0.00 4.35
658 663 4.508124 AGAAATTTCATCGAGGCGTATGAC 59.492 41.667 19.99 0.00 31.99 3.06
671 676 5.336770 GGGGAAAAAGCTCGAGAAATTTCAT 60.337 40.000 25.22 5.50 0.00 2.57
679 684 0.762418 TGTGGGGAAAAAGCTCGAGA 59.238 50.000 18.75 0.00 0.00 4.04
682 687 1.604604 TTCTGTGGGGAAAAAGCTCG 58.395 50.000 0.00 0.00 0.00 5.03
712 717 4.932200 AGCAGTGACAACTACTATTTCAGC 59.068 41.667 0.00 0.00 33.79 4.26
713 718 9.803315 TTATAGCAGTGACAACTACTATTTCAG 57.197 33.333 0.00 0.00 39.13 3.02
719 724 7.891498 TCCATTATAGCAGTGACAACTACTA 57.109 36.000 0.00 0.00 36.83 1.82
726 731 7.124573 AGTACAATCCATTATAGCAGTGACA 57.875 36.000 0.00 0.00 0.00 3.58
727 732 7.210174 TGAGTACAATCCATTATAGCAGTGAC 58.790 38.462 0.00 0.00 0.00 3.67
728 733 7.069950 ACTGAGTACAATCCATTATAGCAGTGA 59.930 37.037 0.00 0.00 31.32 3.41
735 740 8.426489 GTTGGGTACTGAGTACAATCCATTATA 58.574 37.037 22.79 5.14 40.41 0.98
750 755 0.682852 CCCGTTGAGTTGGGTACTGA 59.317 55.000 0.00 0.00 40.76 3.41
751 756 3.226884 CCCGTTGAGTTGGGTACTG 57.773 57.895 0.00 0.00 40.76 2.74
757 762 2.203972 CTGCATGCCCGTTGAGTTGG 62.204 60.000 16.68 0.00 0.00 3.77
758 763 1.210931 CTGCATGCCCGTTGAGTTG 59.789 57.895 16.68 0.00 0.00 3.16
759 764 0.823356 AACTGCATGCCCGTTGAGTT 60.823 50.000 16.68 13.80 0.00 3.01
760 765 0.036164 TAACTGCATGCCCGTTGAGT 59.964 50.000 24.42 14.50 0.00 3.41
761 766 1.331756 GATAACTGCATGCCCGTTGAG 59.668 52.381 24.42 13.94 0.00 3.02
762 767 1.065491 AGATAACTGCATGCCCGTTGA 60.065 47.619 24.42 13.43 0.00 3.18
767 772 2.287915 CGTAACAGATAACTGCATGCCC 59.712 50.000 16.68 0.00 46.95 5.36
830 1715 2.045438 TTGTAGGGCGGCATGTGG 60.045 61.111 12.47 0.00 0.00 4.17
931 1823 0.111253 AATGGGGAATCGAGGATGCC 59.889 55.000 0.00 0.00 37.03 4.40
1125 2023 3.731766 GAGGAGGAGGAGGAGCGCT 62.732 68.421 11.27 11.27 0.00 5.92
1303 2201 2.684735 GGAGAGGGAGGACGAGGT 59.315 66.667 0.00 0.00 0.00 3.85
1410 2308 0.251209 GTTTGGGGGTGGAGAAGGAC 60.251 60.000 0.00 0.00 0.00 3.85
1469 2367 1.304617 GCAAGGAGGAAGGGGGAAG 59.695 63.158 0.00 0.00 0.00 3.46
1887 2785 1.610554 GCCATGGGTTTGCAGATGCT 61.611 55.000 15.13 0.00 42.66 3.79
1950 2848 1.448540 ATCAAGAAGAGCCCACGCG 60.449 57.895 3.53 3.53 41.18 6.01
2196 3094 1.066858 ACCATGAAGTACACCTCTGCG 60.067 52.381 0.00 0.00 0.00 5.18
2615 3520 3.372025 GCATCTTACCTCCCATGGAAACT 60.372 47.826 15.22 0.00 0.00 2.66
2696 3601 3.126831 CCTCAGTAAATTCTGCTAGCCG 58.873 50.000 13.29 5.93 35.63 5.52
2749 3654 8.421784 TGGATATCAACAGAGAATAACCACTAC 58.578 37.037 4.83 0.00 0.00 2.73
2824 3729 2.178106 CTGGGGTACTGATAGGGAGTCT 59.822 54.545 0.00 0.00 0.00 3.24
2853 3758 5.426689 AATGAGCCAACAGTTCTCTCATA 57.573 39.130 19.64 2.30 41.90 2.15
2855 3760 3.777106 AATGAGCCAACAGTTCTCTCA 57.223 42.857 13.58 13.58 38.05 3.27
2929 3834 4.733165 AGCATGATAAATGCCTACCACAT 58.267 39.130 6.69 0.00 45.59 3.21
2931 3836 4.580167 TCAAGCATGATAAATGCCTACCAC 59.420 41.667 6.69 0.00 45.59 4.16
2934 3839 6.973843 TGAATCAAGCATGATAAATGCCTAC 58.026 36.000 4.61 0.00 45.60 3.18
2948 3853 4.143543 TGGAGATGTGTTTGAATCAAGCA 58.856 39.130 8.44 8.44 32.55 3.91
3052 4005 6.718912 TGCATAGAGATATAGAGCAGTTGACT 59.281 38.462 0.00 0.00 0.00 3.41
3132 4085 5.476945 ACCAATCAATGAACTGTAAGAACCC 59.523 40.000 0.00 0.00 37.43 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.