Multiple sequence alignment - TraesCS1A01G153600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G153600 chr1A 100.000 5105 0 0 1 5105 267182043 267176939 0.000000e+00 9428
1 TraesCS1A01G153600 chr1A 94.658 599 27 4 1 597 176414137 176414732 0.000000e+00 924
2 TraesCS1A01G153600 chr1A 95.783 166 7 0 4403 4568 267157929 267157764 8.430000e-68 268
3 TraesCS1A01G153600 chr1A 85.088 114 12 5 4426 4536 207982206 207982317 1.500000e-20 111
4 TraesCS1A01G153600 chr1B 92.992 3168 139 43 853 3991 305153384 305156497 0.000000e+00 4543
5 TraesCS1A01G153600 chr1B 96.560 407 12 1 3987 4391 305156525 305156931 0.000000e+00 673
6 TraesCS1A01G153600 chr1B 81.584 543 52 22 4569 5105 107521361 107521861 6.150000e-109 405
7 TraesCS1A01G153600 chr1D 92.318 2213 115 32 1589 3784 211695911 211693737 0.000000e+00 3094
8 TraesCS1A01G153600 chr1D 95.652 713 19 7 853 1561 211696612 211695908 0.000000e+00 1134
9 TraesCS1A01G153600 chr1D 97.356 416 9 1 3990 4403 211693404 211692989 0.000000e+00 706
10 TraesCS1A01G153600 chr1D 96.154 208 6 2 3785 3991 211693641 211693435 6.330000e-89 339
11 TraesCS1A01G153600 chr1D 79.599 549 52 26 4569 5105 348121558 348121058 6.330000e-89 339
12 TraesCS1A01G153600 chr1D 77.637 237 44 8 4569 4801 67977395 67977164 8.920000e-28 135
13 TraesCS1A01G153600 chr1D 82.069 145 21 5 4568 4711 460987474 460987614 8.980000e-23 119
14 TraesCS1A01G153600 chr6D 94.269 855 43 4 1 850 74270859 74270006 0.000000e+00 1303
15 TraesCS1A01G153600 chr6D 94.360 851 43 3 1 847 74273966 74274815 0.000000e+00 1301
16 TraesCS1A01G153600 chr6D 94.517 839 37 8 1 834 256249603 256250437 0.000000e+00 1286
17 TraesCS1A01G153600 chr6D 94.224 831 42 5 1 829 73838262 73839088 0.000000e+00 1264
18 TraesCS1A01G153600 chr3A 93.445 839 48 6 1 836 296903923 296904757 0.000000e+00 1238
19 TraesCS1A01G153600 chr3A 88.983 118 9 2 3536 3653 100052648 100052535 5.330000e-30 143
20 TraesCS1A01G153600 chr3B 93.818 825 43 5 1 822 473402915 473403734 0.000000e+00 1234
21 TraesCS1A01G153600 chr3B 91.481 540 36 4 4569 5105 650054121 650053589 0.000000e+00 734
22 TraesCS1A01G153600 chr3B 86.525 141 16 3 4569 4709 650049086 650049223 8.850000e-33 152
23 TraesCS1A01G153600 chr2A 93.486 829 47 6 1 827 192065835 192065012 0.000000e+00 1225
24 TraesCS1A01G153600 chr2A 85.821 134 11 7 3537 3665 4211718 4211848 8.920000e-28 135
25 TraesCS1A01G153600 chr6B 93.037 833 48 9 1 831 199013365 199012541 0.000000e+00 1208
26 TraesCS1A01G153600 chr6B 91.358 486 35 5 4568 5048 487800461 487799978 0.000000e+00 658
27 TraesCS1A01G153600 chr6B 79.636 550 70 20 4568 5105 399043775 399044294 1.750000e-94 357
28 TraesCS1A01G153600 chr6B 94.030 134 6 2 4425 4557 384186798 384186930 8.670000e-48 202
29 TraesCS1A01G153600 chr6B 92.537 134 8 2 4425 4557 384183298 384183430 1.880000e-44 191
30 TraesCS1A01G153600 chr7B 92.473 837 45 9 1 829 355692552 355691726 0.000000e+00 1181
31 TraesCS1A01G153600 chr7B 80.839 548 57 32 4565 5105 29630483 29630989 2.230000e-103 387
32 TraesCS1A01G153600 chr7B 81.364 440 59 13 4569 4989 149679812 149679377 2.280000e-88 337
33 TraesCS1A01G153600 chr7B 84.173 139 16 6 3538 3676 566581177 566581045 4.150000e-26 130
34 TraesCS1A01G153600 chr7B 82.963 135 12 7 4426 4556 688133695 688133822 1.500000e-20 111
35 TraesCS1A01G153600 chr7D 82.092 564 62 18 4571 5105 260724622 260724069 3.630000e-121 446
36 TraesCS1A01G153600 chr7D 91.139 158 12 2 4403 4560 499837603 499837758 4.000000e-51 213
37 TraesCS1A01G153600 chr7D 90.000 100 9 1 4461 4560 499841322 499841420 1.490000e-25 128
38 TraesCS1A01G153600 chr2D 91.941 273 19 1 4569 4838 645281586 645281314 3.730000e-101 379
39 TraesCS1A01G153600 chr2D 97.596 208 4 1 4898 5105 645281318 645281112 6.290000e-94 355
40 TraesCS1A01G153600 chr2D 80.000 145 21 8 4569 4711 567620918 567621056 3.250000e-17 100
41 TraesCS1A01G153600 chr7A 86.636 217 14 7 4898 5105 95120042 95120252 5.140000e-55 226
42 TraesCS1A01G153600 chr2B 88.321 137 14 2 4403 4539 441489925 441489791 4.090000e-36 163
43 TraesCS1A01G153600 chr2B 88.136 118 12 1 3540 3655 385195544 385195427 6.890000e-29 139
44 TraesCS1A01G153600 chr5B 90.435 115 6 3 3540 3653 472118158 472118268 4.120000e-31 147
45 TraesCS1A01G153600 chr5B 84.173 139 16 6 3538 3676 86581338 86581206 4.150000e-26 130
46 TraesCS1A01G153600 chr4B 87.302 126 12 4 3540 3665 659672199 659672320 1.920000e-29 141
47 TraesCS1A01G153600 chr4A 85.088 114 12 5 4426 4536 589898046 589898157 1.500000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G153600 chr1A 267176939 267182043 5104 True 9428.00 9428 100.000 1 5105 1 chr1A.!!$R2 5104
1 TraesCS1A01G153600 chr1A 176414137 176414732 595 False 924.00 924 94.658 1 597 1 chr1A.!!$F1 596
2 TraesCS1A01G153600 chr1B 305153384 305156931 3547 False 2608.00 4543 94.776 853 4391 2 chr1B.!!$F2 3538
3 TraesCS1A01G153600 chr1B 107521361 107521861 500 False 405.00 405 81.584 4569 5105 1 chr1B.!!$F1 536
4 TraesCS1A01G153600 chr1D 211692989 211696612 3623 True 1318.25 3094 95.370 853 4403 4 chr1D.!!$R3 3550
5 TraesCS1A01G153600 chr1D 348121058 348121558 500 True 339.00 339 79.599 4569 5105 1 chr1D.!!$R2 536
6 TraesCS1A01G153600 chr6D 74270006 74270859 853 True 1303.00 1303 94.269 1 850 1 chr6D.!!$R1 849
7 TraesCS1A01G153600 chr6D 74273966 74274815 849 False 1301.00 1301 94.360 1 847 1 chr6D.!!$F2 846
8 TraesCS1A01G153600 chr6D 256249603 256250437 834 False 1286.00 1286 94.517 1 834 1 chr6D.!!$F3 833
9 TraesCS1A01G153600 chr6D 73838262 73839088 826 False 1264.00 1264 94.224 1 829 1 chr6D.!!$F1 828
10 TraesCS1A01G153600 chr3A 296903923 296904757 834 False 1238.00 1238 93.445 1 836 1 chr3A.!!$F1 835
11 TraesCS1A01G153600 chr3B 473402915 473403734 819 False 1234.00 1234 93.818 1 822 1 chr3B.!!$F1 821
12 TraesCS1A01G153600 chr3B 650053589 650054121 532 True 734.00 734 91.481 4569 5105 1 chr3B.!!$R1 536
13 TraesCS1A01G153600 chr2A 192065012 192065835 823 True 1225.00 1225 93.486 1 827 1 chr2A.!!$R1 826
14 TraesCS1A01G153600 chr6B 199012541 199013365 824 True 1208.00 1208 93.037 1 831 1 chr6B.!!$R1 830
15 TraesCS1A01G153600 chr6B 399043775 399044294 519 False 357.00 357 79.636 4568 5105 1 chr6B.!!$F1 537
16 TraesCS1A01G153600 chr7B 355691726 355692552 826 True 1181.00 1181 92.473 1 829 1 chr7B.!!$R2 828
17 TraesCS1A01G153600 chr7B 29630483 29630989 506 False 387.00 387 80.839 4565 5105 1 chr7B.!!$F1 540
18 TraesCS1A01G153600 chr7D 260724069 260724622 553 True 446.00 446 82.092 4571 5105 1 chr7D.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 832 0.878416 TGCTATTTGACACAACGGGC 59.122 50.0 0.00 0.0 0.0 6.13 F
1924 1955 0.182775 ACTTTGCAGGTTCGGAGGTT 59.817 50.0 0.00 0.0 0.0 3.50 F
2758 2800 0.591170 TAACTTCTGTGCGCCTTTGC 59.409 50.0 4.18 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2552 2591 0.107456 CCTGCATCGCCTAAGGACAT 59.893 55.0 0.0 0.0 30.92 3.06 R
3398 3442 0.034089 ATTCTTCCTTTGGGAGCCGG 60.034 55.0 0.0 0.0 43.29 6.13 R
4555 4732 0.175073 CCCGTCCGAAAAGAGGGTAG 59.825 60.0 0.0 0.0 39.65 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 3.891977 TGTTTGCTTGGCCAAATGTACTA 59.108 39.130 20.91 0.66 37.09 1.82
235 236 4.630644 ATGAAGCTGTCAAGGAAGAAGA 57.369 40.909 0.00 0.00 40.50 2.87
291 292 1.496060 TGAGTCATGGGCCGAACTAT 58.504 50.000 0.00 0.00 0.00 2.12
448 456 3.244112 GGCGTATTTACACCTAGGAGCAT 60.244 47.826 17.98 3.63 0.00 3.79
635 649 7.497249 GCCAATTTTACTCTCTCATCATAGTGT 59.503 37.037 0.00 0.00 0.00 3.55
679 693 9.646522 ACCTATTCATATTATGCAAAGTTTCCT 57.353 29.630 0.00 0.00 0.00 3.36
694 708 7.371159 CAAAGTTTCCTTTTTCCCAGACTATC 58.629 38.462 0.00 0.00 38.87 2.08
799 813 8.798859 ACAATATATTTTCAGCAAGTCTCTGT 57.201 30.769 0.00 0.00 33.48 3.41
810 824 3.748048 GCAAGTCTCTGTGCTATTTGACA 59.252 43.478 0.00 0.00 37.78 3.58
818 832 0.878416 TGCTATTTGACACAACGGGC 59.122 50.000 0.00 0.00 0.00 6.13
998 1019 4.421479 CGAGCGCACCGAGGAAGT 62.421 66.667 11.47 0.00 0.00 3.01
1030 1051 2.736995 CGAAGAAGCCAACGCCGA 60.737 61.111 0.00 0.00 34.57 5.54
1078 1099 3.552068 CCTCACCGTTCAAAATTTCACCC 60.552 47.826 0.00 0.00 0.00 4.61
1079 1100 2.033550 TCACCGTTCAAAATTTCACCCG 59.966 45.455 0.00 0.00 0.00 5.28
1099 1120 0.536460 AATTTGGCCTCGGTTCACGT 60.536 50.000 3.32 0.00 44.69 4.49
1500 1525 3.746492 ACTGTTCGAGGCAATTGTAGTTC 59.254 43.478 7.40 0.00 0.00 3.01
1508 1533 5.041191 AGGCAATTGTAGTTCCCATCTAG 57.959 43.478 7.40 0.00 0.00 2.43
1545 1570 8.966868 TGATTTAAGGTTCAATCCCTGTTATTC 58.033 33.333 0.00 0.00 30.99 1.75
1546 1571 6.995511 TTAAGGTTCAATCCCTGTTATTCG 57.004 37.500 0.00 0.00 30.99 3.34
1591 1617 2.236489 ATGGCCACAGCTACCAAATT 57.764 45.000 8.16 0.00 36.94 1.82
1595 1621 1.745653 GCCACAGCTACCAAATTCTCC 59.254 52.381 0.00 0.00 35.50 3.71
1599 1625 4.280677 CCACAGCTACCAAATTCTCCAAAA 59.719 41.667 0.00 0.00 0.00 2.44
1644 1670 8.879427 ATTTACTTAAAGCCCTTATCTGTTGT 57.121 30.769 0.00 0.00 0.00 3.32
1645 1671 9.969001 ATTTACTTAAAGCCCTTATCTGTTGTA 57.031 29.630 0.00 0.00 0.00 2.41
1646 1672 9.969001 TTTACTTAAAGCCCTTATCTGTTGTAT 57.031 29.630 0.00 0.00 0.00 2.29
1648 1674 8.959705 ACTTAAAGCCCTTATCTGTTGTATAC 57.040 34.615 0.00 0.00 0.00 1.47
1649 1675 7.991460 ACTTAAAGCCCTTATCTGTTGTATACC 59.009 37.037 0.00 0.00 0.00 2.73
1681 1707 3.370978 CGGTTTGACATACCATCTGTGAC 59.629 47.826 14.46 0.00 35.31 3.67
1685 1711 2.427095 TGACATACCATCTGTGACTCCG 59.573 50.000 0.00 0.00 0.00 4.63
1686 1712 1.137086 ACATACCATCTGTGACTCCGC 59.863 52.381 0.00 0.00 0.00 5.54
1687 1713 1.410517 CATACCATCTGTGACTCCGCT 59.589 52.381 0.00 0.00 0.00 5.52
1756 1787 7.015877 GCTAAATAGAAGTTGTTGAAACTCGG 58.984 38.462 0.00 0.00 0.00 4.63
1779 1810 4.022849 GGGAGTTGAGGTTTGACTGAATTG 60.023 45.833 0.00 0.00 0.00 2.32
1842 1873 5.530915 AGAAACCACATGTTGAGAATTTCGA 59.469 36.000 3.55 0.00 37.23 3.71
1844 1875 5.551760 ACCACATGTTGAGAATTTCGATC 57.448 39.130 3.55 0.00 0.00 3.69
1846 1877 5.122869 ACCACATGTTGAGAATTTCGATCAG 59.877 40.000 3.55 0.00 0.00 2.90
1848 1879 6.313658 CCACATGTTGAGAATTTCGATCAGTA 59.686 38.462 0.00 0.00 0.00 2.74
1852 1883 7.761651 TGTTGAGAATTTCGATCAGTATCAG 57.238 36.000 0.00 0.00 31.93 2.90
1857 1888 9.014297 TGAGAATTTCGATCAGTATCAGCTATA 57.986 33.333 0.00 0.00 31.93 1.31
1860 1891 8.764524 AATTTCGATCAGTATCAGCTATAACC 57.235 34.615 0.00 0.00 31.93 2.85
1908 1939 4.141482 TGCTTTCTCCCAGTAGTTCAACTT 60.141 41.667 0.00 0.00 0.00 2.66
1917 1948 4.261197 CCAGTAGTTCAACTTTGCAGGTTC 60.261 45.833 0.00 0.00 0.00 3.62
1918 1949 3.560068 AGTAGTTCAACTTTGCAGGTTCG 59.440 43.478 0.00 2.51 0.00 3.95
1922 1953 0.593128 CAACTTTGCAGGTTCGGAGG 59.407 55.000 4.50 0.00 0.00 4.30
1924 1955 0.182775 ACTTTGCAGGTTCGGAGGTT 59.817 50.000 0.00 0.00 0.00 3.50
1938 1969 6.407752 GGTTCGGAGGTTATCTAATTCCTGAA 60.408 42.308 0.00 0.00 0.00 3.02
1939 1970 6.406692 TCGGAGGTTATCTAATTCCTGAAG 57.593 41.667 0.00 0.00 0.00 3.02
1940 1971 4.991687 CGGAGGTTATCTAATTCCTGAAGC 59.008 45.833 0.00 0.00 0.00 3.86
1970 2001 5.529289 TCTGTAGGTATTGAGAGGGACATT 58.471 41.667 0.00 0.00 0.00 2.71
1982 2013 3.200825 AGAGGGACATTGGGACATTACAG 59.799 47.826 0.00 0.00 39.30 2.74
2019 2050 7.630242 ATGTTTAATCACATACCCTGTCTTG 57.370 36.000 0.00 0.00 35.51 3.02
2036 2068 6.207417 CCTGTCTTGTGTGGTTAATGAGAAAT 59.793 38.462 0.00 0.00 0.00 2.17
2049 2081 8.470002 GGTTAATGAGAAATAAAATGCTCAGGT 58.530 33.333 0.00 0.00 40.34 4.00
2050 2082 9.508567 GTTAATGAGAAATAAAATGCTCAGGTC 57.491 33.333 0.00 0.00 40.34 3.85
2052 2084 7.707624 ATGAGAAATAAAATGCTCAGGTCAA 57.292 32.000 0.00 0.00 40.34 3.18
2053 2085 7.707624 TGAGAAATAAAATGCTCAGGTCAAT 57.292 32.000 0.00 0.00 32.85 2.57
2054 2086 7.541162 TGAGAAATAAAATGCTCAGGTCAATG 58.459 34.615 0.00 0.00 32.85 2.82
2056 2088 6.664816 AGAAATAAAATGCTCAGGTCAATGGA 59.335 34.615 0.00 0.00 0.00 3.41
2098 2136 6.305693 GTCATCTGACAAGTTGTTAAAGCT 57.694 37.500 10.45 0.00 44.18 3.74
2164 2202 5.117592 GCACACATATTTTCTTGCTGTGTTC 59.882 40.000 4.03 0.00 45.94 3.18
2166 2204 4.853196 CACATATTTTCTTGCTGTGTTCCG 59.147 41.667 0.00 0.00 34.07 4.30
2174 2212 2.987413 TGCTGTGTTCCGCTATTTTG 57.013 45.000 0.00 0.00 0.00 2.44
2180 2218 4.355437 TGTGTTCCGCTATTTTGTTTGTG 58.645 39.130 0.00 0.00 0.00 3.33
2203 2241 4.399303 GCCAGTTGAATAAGCAGTAACCAT 59.601 41.667 0.00 0.00 0.00 3.55
2248 2286 7.013274 TGTTCCAATTAACAGGAAAAGAGACTG 59.987 37.037 11.01 0.00 44.88 3.51
2298 2336 5.405935 ACTGGCAATGAGGTTTTATTTCC 57.594 39.130 0.00 0.00 0.00 3.13
2323 2361 9.256477 CCTATATTTCAGTTTCACGCACTAATA 57.744 33.333 0.00 0.00 0.00 0.98
2370 2408 6.418946 GTTCTCCTGATTCCCTTCTATTTGT 58.581 40.000 0.00 0.00 0.00 2.83
2376 2414 2.691409 TCCCTTCTATTTGTCAGGCG 57.309 50.000 0.00 0.00 0.00 5.52
2463 2501 1.661341 GAGCTCAGATTCGTGGCATT 58.339 50.000 9.40 0.00 0.00 3.56
2534 2573 6.151691 CACATGGTGGTGAGTTAATTTTCTG 58.848 40.000 0.00 0.00 41.32 3.02
2536 2575 6.323739 ACATGGTGGTGAGTTAATTTTCTGTT 59.676 34.615 0.00 0.00 0.00 3.16
2585 2624 0.819259 TGCAGGCCAACACTTCAGTC 60.819 55.000 5.01 0.00 0.00 3.51
2641 2680 5.071788 TGGGAGCTATGAACAAGGTAATAGG 59.928 44.000 0.00 0.00 0.00 2.57
2658 2697 8.198807 GGTAATAGGCTACCTAACTTATTGGA 57.801 38.462 0.00 0.00 39.77 3.53
2665 2704 9.117223 AGGCTACCTAACTTATTGGAATGATAT 57.883 33.333 0.00 0.00 28.47 1.63
2708 2749 9.577110 TTTAGAAACCAAGTGTATACTATCACG 57.423 33.333 4.17 0.00 39.25 4.35
2750 2792 9.804758 AATATCTTACAGTAGTAACTTCTGTGC 57.195 33.333 16.19 0.00 41.06 4.57
2752 2794 2.673833 ACAGTAGTAACTTCTGTGCGC 58.326 47.619 0.00 0.00 39.85 6.09
2758 2800 0.591170 TAACTTCTGTGCGCCTTTGC 59.409 50.000 4.18 0.00 0.00 3.68
2760 2802 1.103398 ACTTCTGTGCGCCTTTGCTT 61.103 50.000 4.18 0.00 35.36 3.91
2761 2803 0.874390 CTTCTGTGCGCCTTTGCTTA 59.126 50.000 4.18 0.00 35.36 3.09
2762 2804 1.266718 CTTCTGTGCGCCTTTGCTTAA 59.733 47.619 4.18 0.00 35.36 1.85
2763 2805 1.313772 TCTGTGCGCCTTTGCTTAAA 58.686 45.000 4.18 0.00 35.36 1.52
2767 2809 1.001815 GTGCGCCTTTGCTTAAACTGA 60.002 47.619 4.18 0.00 35.36 3.41
2772 2814 2.924029 GCCTTTGCTTAAACTGAGCTGC 60.924 50.000 0.00 0.00 40.75 5.25
2792 2834 7.533426 AGCTGCAGAATACAATTTTGTAAGAG 58.467 34.615 20.43 0.80 45.74 2.85
2796 2838 8.845227 TGCAGAATACAATTTTGTAAGAGTTGA 58.155 29.630 7.20 0.00 45.74 3.18
2802 2844 7.734538 ACAATTTTGTAAGAGTTGAAACACG 57.265 32.000 0.00 0.00 40.16 4.49
2865 2907 0.819582 ATCCCGCCAAGCAAATGAAG 59.180 50.000 0.00 0.00 0.00 3.02
2877 2919 5.320549 AGCAAATGAAGGTAATGCAAGAG 57.679 39.130 0.00 0.00 39.42 2.85
2914 2956 4.024893 CAGCACAAATGGATATGACGGTAC 60.025 45.833 0.00 0.00 0.00 3.34
2930 2972 2.968675 GGTACGCAACTTATGTCCAGT 58.031 47.619 0.00 0.00 0.00 4.00
2931 2973 4.114058 GGTACGCAACTTATGTCCAGTA 57.886 45.455 0.00 0.00 0.00 2.74
2932 2974 3.861689 GGTACGCAACTTATGTCCAGTAC 59.138 47.826 9.85 9.85 32.98 2.73
2933 2975 3.955650 ACGCAACTTATGTCCAGTACT 57.044 42.857 0.00 0.00 0.00 2.73
2959 3001 8.668510 TCCTACTTTCATAGAATGATTGCTTC 57.331 34.615 0.00 0.00 39.39 3.86
3022 3066 3.219176 AGCATATGATGGGTTCCTGTG 57.781 47.619 6.97 0.00 0.00 3.66
3030 3074 5.255397 TGATGGGTTCCTGTGTTAGATTT 57.745 39.130 0.00 0.00 0.00 2.17
3051 3095 1.879380 TGACAAAGTGTATGCACCTGC 59.121 47.619 10.59 5.90 46.35 4.85
3068 3112 3.386078 ACCTGCATGTACTGACTATCCTG 59.614 47.826 0.00 0.00 0.00 3.86
3069 3113 3.638627 CCTGCATGTACTGACTATCCTGA 59.361 47.826 0.00 0.00 0.00 3.86
3096 3140 2.232208 TGTGCAGAACGAGATGATGTCT 59.768 45.455 0.00 0.00 40.81 3.41
3126 3170 5.500645 TCGACAATGTCTTAGACGATGAT 57.499 39.130 19.29 1.45 34.95 2.45
3138 3182 1.617850 GACGATGATCAGGCTGAGGAT 59.382 52.381 23.24 16.07 0.00 3.24
3378 3422 7.445402 TCTTGTTCTAAATTTCTCTTGTCCTGG 59.555 37.037 0.00 0.00 0.00 4.45
3473 3517 2.703007 GCAGGATCCTGGATCTGTAGTT 59.297 50.000 36.92 11.08 43.77 2.24
3560 3604 0.400594 CTCCCTCCGTCCCAAAAAGT 59.599 55.000 0.00 0.00 0.00 2.66
3654 3698 2.621526 CAAGCTTTTTGGTACGGAGGTT 59.378 45.455 0.00 0.00 0.00 3.50
3732 3777 3.118811 TGATGTCCTATGCAACACATCGA 60.119 43.478 18.33 0.00 45.49 3.59
3919 4060 9.566432 AAACATGATCTGGTTAGGATCTTATTC 57.434 33.333 0.00 0.00 39.95 1.75
4005 4178 6.603237 TCGCTCAATGAATTTACACCTATG 57.397 37.500 0.00 0.00 0.00 2.23
4065 4238 5.334879 CCTTGTTTACAGTTCGGAATTGGAG 60.335 44.000 16.23 5.54 0.00 3.86
4072 4245 1.066143 GTTCGGAATTGGAGGAGCTCA 60.066 52.381 17.19 0.00 31.08 4.26
4254 4429 0.033504 TGACGCCTCCAGAGTTTGAC 59.966 55.000 0.00 0.00 0.00 3.18
4343 4518 4.832248 TGAGTTTATGCTTCGATGGAGTT 58.168 39.130 0.00 0.00 0.00 3.01
4410 4587 9.757227 GATATTTCATATAGTATCTGTCAGGGC 57.243 37.037 0.00 0.00 0.00 5.19
4411 4588 6.360370 TTTCATATAGTATCTGTCAGGGCC 57.640 41.667 0.00 0.00 0.00 5.80
4412 4589 4.353777 TCATATAGTATCTGTCAGGGCCC 58.646 47.826 16.46 16.46 0.00 5.80
4413 4590 4.045974 TCATATAGTATCTGTCAGGGCCCT 59.954 45.833 22.28 22.28 0.00 5.19
4414 4591 2.383442 TAGTATCTGTCAGGGCCCTC 57.617 55.000 25.77 13.35 0.00 4.30
4415 4592 0.399233 AGTATCTGTCAGGGCCCTCC 60.399 60.000 25.77 16.80 0.00 4.30
4426 4603 4.928520 GCCCTCCCCCTAGCCCAT 62.929 72.222 0.00 0.00 0.00 4.00
4427 4604 2.856000 CCCTCCCCCTAGCCCATG 60.856 72.222 0.00 0.00 0.00 3.66
4428 4605 2.039405 CCTCCCCCTAGCCCATGT 60.039 66.667 0.00 0.00 0.00 3.21
4429 4606 2.455565 CCTCCCCCTAGCCCATGTG 61.456 68.421 0.00 0.00 0.00 3.21
4430 4607 2.368192 TCCCCCTAGCCCATGTGG 60.368 66.667 0.00 0.00 37.09 4.17
4440 4617 3.795905 CCATGTGGGCTTGCCTTT 58.204 55.556 11.71 0.00 0.00 3.11
4441 4618 1.294138 CCATGTGGGCTTGCCTTTG 59.706 57.895 11.71 4.55 0.00 2.77
4442 4619 1.294138 CATGTGGGCTTGCCTTTGG 59.706 57.895 11.71 0.00 0.00 3.28
4443 4620 1.155859 ATGTGGGCTTGCCTTTGGA 59.844 52.632 11.71 0.00 0.00 3.53
4444 4621 1.187567 ATGTGGGCTTGCCTTTGGAC 61.188 55.000 11.71 2.31 0.00 4.02
4445 4622 1.832167 GTGGGCTTGCCTTTGGACA 60.832 57.895 11.71 0.00 0.00 4.02
4446 4623 1.155859 TGGGCTTGCCTTTGGACAT 59.844 52.632 11.71 0.00 0.00 3.06
4447 4624 0.899717 TGGGCTTGCCTTTGGACATC 60.900 55.000 11.71 0.00 0.00 3.06
4448 4625 0.899717 GGGCTTGCCTTTGGACATCA 60.900 55.000 11.71 0.00 0.00 3.07
4449 4626 0.244721 GGCTTGCCTTTGGACATCAC 59.755 55.000 4.11 0.00 0.00 3.06
4450 4627 1.251251 GCTTGCCTTTGGACATCACT 58.749 50.000 0.00 0.00 0.00 3.41
4451 4628 1.615392 GCTTGCCTTTGGACATCACTT 59.385 47.619 0.00 0.00 0.00 3.16
4452 4629 2.608752 GCTTGCCTTTGGACATCACTTG 60.609 50.000 0.00 0.00 0.00 3.16
4453 4630 1.619654 TGCCTTTGGACATCACTTGG 58.380 50.000 0.00 0.00 0.00 3.61
4454 4631 0.890683 GCCTTTGGACATCACTTGGG 59.109 55.000 0.00 0.00 0.00 4.12
4455 4632 0.890683 CCTTTGGACATCACTTGGGC 59.109 55.000 0.00 0.00 0.00 5.36
4456 4633 0.890683 CTTTGGACATCACTTGGGCC 59.109 55.000 0.00 0.00 0.00 5.80
4457 4634 0.482446 TTTGGACATCACTTGGGCCT 59.518 50.000 4.53 0.00 0.00 5.19
4458 4635 0.251297 TTGGACATCACTTGGGCCTG 60.251 55.000 4.53 0.00 0.00 4.85
4459 4636 1.379044 GGACATCACTTGGGCCTGG 60.379 63.158 4.53 0.00 0.00 4.45
4460 4637 2.036256 ACATCACTTGGGCCTGGC 59.964 61.111 11.05 11.05 0.00 4.85
4478 4655 2.507944 CCGGCTGGGAATCCTCTG 59.492 66.667 2.57 0.00 38.47 3.35
4479 4656 2.507944 CGGCTGGGAATCCTCTGG 59.492 66.667 0.00 0.00 0.00 3.86
4480 4657 2.194326 GGCTGGGAATCCTCTGGC 59.806 66.667 0.00 2.59 0.00 4.85
4481 4658 2.194326 GCTGGGAATCCTCTGGCC 59.806 66.667 0.00 0.00 0.00 5.36
4482 4659 2.507944 CTGGGAATCCTCTGGCCG 59.492 66.667 0.00 0.00 0.00 6.13
4483 4660 2.040442 TGGGAATCCTCTGGCCGA 59.960 61.111 0.00 0.00 0.00 5.54
4484 4661 1.384502 TGGGAATCCTCTGGCCGAT 60.385 57.895 0.00 0.00 0.00 4.18
4485 4662 1.072159 GGGAATCCTCTGGCCGATG 59.928 63.158 0.00 0.00 0.00 3.84
4486 4663 1.599240 GGAATCCTCTGGCCGATGC 60.599 63.158 0.00 0.00 0.00 3.91
4487 4664 1.146930 GAATCCTCTGGCCGATGCA 59.853 57.895 0.00 0.00 40.13 3.96
4488 4665 0.883814 GAATCCTCTGGCCGATGCAG 60.884 60.000 0.00 0.00 40.13 4.41
4489 4666 2.955022 AATCCTCTGGCCGATGCAGC 62.955 60.000 0.00 0.00 40.13 5.25
4490 4667 4.172512 CCTCTGGCCGATGCAGCT 62.173 66.667 0.00 0.00 40.13 4.24
4491 4668 2.800541 CCTCTGGCCGATGCAGCTA 61.801 63.158 0.00 0.00 40.13 3.32
4492 4669 1.593750 CTCTGGCCGATGCAGCTAC 60.594 63.158 0.00 0.00 40.13 3.58
4493 4670 2.187685 CTGGCCGATGCAGCTACA 59.812 61.111 0.00 0.00 40.13 2.74
4494 4671 1.450134 CTGGCCGATGCAGCTACAA 60.450 57.895 0.00 0.00 40.13 2.41
4495 4672 1.002746 TGGCCGATGCAGCTACAAA 60.003 52.632 0.00 0.00 40.13 2.83
4496 4673 0.394216 TGGCCGATGCAGCTACAAAT 60.394 50.000 0.00 0.00 40.13 2.32
4497 4674 1.134250 TGGCCGATGCAGCTACAAATA 60.134 47.619 0.00 0.00 40.13 1.40
4498 4675 1.264288 GGCCGATGCAGCTACAAATAC 59.736 52.381 0.00 0.00 40.13 1.89
4499 4676 2.213499 GCCGATGCAGCTACAAATACT 58.787 47.619 0.00 0.00 37.47 2.12
4500 4677 2.614057 GCCGATGCAGCTACAAATACTT 59.386 45.455 0.00 0.00 37.47 2.24
4501 4678 3.546815 GCCGATGCAGCTACAAATACTTG 60.547 47.826 0.00 0.00 36.62 3.16
4502 4679 3.002656 CCGATGCAGCTACAAATACTTGG 59.997 47.826 0.00 0.00 36.82 3.61
4503 4680 3.002656 CGATGCAGCTACAAATACTTGGG 59.997 47.826 0.00 0.00 36.82 4.12
4504 4681 2.091541 TGCAGCTACAAATACTTGGGC 58.908 47.619 0.00 0.00 36.82 5.36
4505 4682 2.091541 GCAGCTACAAATACTTGGGCA 58.908 47.619 6.84 0.00 37.65 5.36
4506 4683 2.491693 GCAGCTACAAATACTTGGGCAA 59.508 45.455 6.84 0.00 37.65 4.52
4507 4684 3.056891 GCAGCTACAAATACTTGGGCAAA 60.057 43.478 6.84 0.00 37.65 3.68
4508 4685 4.560513 GCAGCTACAAATACTTGGGCAAAA 60.561 41.667 6.84 0.00 37.65 2.44
4509 4686 5.163513 CAGCTACAAATACTTGGGCAAAAG 58.836 41.667 6.84 0.00 37.65 2.27
4510 4687 3.926527 GCTACAAATACTTGGGCAAAAGC 59.073 43.478 0.00 0.00 36.82 3.51
4511 4688 4.560513 GCTACAAATACTTGGGCAAAAGCA 60.561 41.667 0.00 0.00 36.82 3.91
4512 4689 4.414337 ACAAATACTTGGGCAAAAGCAA 57.586 36.364 0.00 0.00 36.82 3.91
4513 4690 4.126437 ACAAATACTTGGGCAAAAGCAAC 58.874 39.130 0.00 0.00 36.82 4.17
4514 4691 2.723124 ATACTTGGGCAAAAGCAACG 57.277 45.000 0.00 0.00 0.00 4.10
4515 4692 1.681538 TACTTGGGCAAAAGCAACGA 58.318 45.000 0.00 0.00 0.00 3.85
4516 4693 0.820871 ACTTGGGCAAAAGCAACGAA 59.179 45.000 0.00 0.00 0.00 3.85
4517 4694 1.208259 CTTGGGCAAAAGCAACGAAC 58.792 50.000 0.00 0.00 0.00 3.95
4518 4695 0.532573 TTGGGCAAAAGCAACGAACA 59.467 45.000 0.00 0.00 0.00 3.18
4519 4696 0.532573 TGGGCAAAAGCAACGAACAA 59.467 45.000 0.00 0.00 0.00 2.83
4520 4697 0.927537 GGGCAAAAGCAACGAACAAC 59.072 50.000 0.00 0.00 0.00 3.32
4521 4698 0.927537 GGCAAAAGCAACGAACAACC 59.072 50.000 0.00 0.00 0.00 3.77
4522 4699 1.470805 GGCAAAAGCAACGAACAACCT 60.471 47.619 0.00 0.00 0.00 3.50
4523 4700 2.223618 GGCAAAAGCAACGAACAACCTA 60.224 45.455 0.00 0.00 0.00 3.08
4524 4701 3.552068 GGCAAAAGCAACGAACAACCTAT 60.552 43.478 0.00 0.00 0.00 2.57
4525 4702 3.668656 GCAAAAGCAACGAACAACCTATC 59.331 43.478 0.00 0.00 0.00 2.08
4526 4703 4.226761 CAAAAGCAACGAACAACCTATCC 58.773 43.478 0.00 0.00 0.00 2.59
4527 4704 2.851263 AGCAACGAACAACCTATCCA 57.149 45.000 0.00 0.00 0.00 3.41
4528 4705 2.699954 AGCAACGAACAACCTATCCAG 58.300 47.619 0.00 0.00 0.00 3.86
4529 4706 2.038557 AGCAACGAACAACCTATCCAGT 59.961 45.455 0.00 0.00 0.00 4.00
4530 4707 2.159627 GCAACGAACAACCTATCCAGTG 59.840 50.000 0.00 0.00 0.00 3.66
4531 4708 2.742053 CAACGAACAACCTATCCAGTGG 59.258 50.000 1.40 1.40 0.00 4.00
4532 4709 2.253610 ACGAACAACCTATCCAGTGGA 58.746 47.619 15.88 15.88 35.55 4.02
4533 4710 2.838202 ACGAACAACCTATCCAGTGGAT 59.162 45.455 27.47 27.47 45.40 3.41
4534 4711 3.118738 ACGAACAACCTATCCAGTGGATC 60.119 47.826 28.15 11.26 42.11 3.36
4535 4712 3.118775 CGAACAACCTATCCAGTGGATCA 60.119 47.826 28.15 13.38 42.11 2.92
4536 4713 3.914426 ACAACCTATCCAGTGGATCAC 57.086 47.619 28.15 0.00 42.11 3.06
4537 4714 2.168521 ACAACCTATCCAGTGGATCACG 59.831 50.000 28.15 17.72 42.11 4.35
4538 4715 1.414158 ACCTATCCAGTGGATCACGG 58.586 55.000 28.15 25.32 42.11 4.94
4539 4716 1.063190 ACCTATCCAGTGGATCACGGA 60.063 52.381 28.15 9.63 42.11 4.69
4540 4717 1.341531 CCTATCCAGTGGATCACGGAC 59.658 57.143 28.15 0.00 42.11 4.79
4541 4718 1.341531 CTATCCAGTGGATCACGGACC 59.658 57.143 28.15 0.00 42.11 4.46
4542 4719 0.617535 ATCCAGTGGATCACGGACCA 60.618 55.000 19.53 0.00 38.09 4.02
4543 4720 0.834261 TCCAGTGGATCACGGACCAA 60.834 55.000 8.12 0.00 39.64 3.67
4544 4721 0.673644 CCAGTGGATCACGGACCAAC 60.674 60.000 1.68 0.00 39.64 3.77
4545 4722 0.673644 CAGTGGATCACGGACCAACC 60.674 60.000 0.00 0.00 39.64 3.77
4546 4723 1.376812 GTGGATCACGGACCAACCC 60.377 63.158 0.00 0.00 37.94 4.11
4564 4741 3.459063 GACGGCGGCTACCCTCTT 61.459 66.667 13.24 0.00 0.00 2.85
4565 4742 3.001406 ACGGCGGCTACCCTCTTT 61.001 61.111 13.24 0.00 0.00 2.52
4566 4743 2.267961 CGGCGGCTACCCTCTTTT 59.732 61.111 7.61 0.00 0.00 2.27
4608 4785 3.151710 CCCGTGCTCCCATCCGTA 61.152 66.667 0.00 0.00 0.00 4.02
4728 4906 3.314080 CGTTTGCCCCAATATGTATTCGT 59.686 43.478 0.00 0.00 0.00 3.85
4736 4914 5.456186 CCCCAATATGTATTCGTTCCTCCTT 60.456 44.000 0.00 0.00 0.00 3.36
4766 4948 3.948086 CTGCCGACAGTCGACCGTC 62.948 68.421 24.88 19.82 43.74 4.79
4767 4949 3.735029 GCCGACAGTCGACCGTCT 61.735 66.667 25.15 0.00 43.74 4.18
4806 4988 1.533273 ATCTGCTACCGCCCCGTAT 60.533 57.895 0.00 0.00 34.43 3.06
4851 5036 2.646175 CCGGCGTGAAAGGAGGAGA 61.646 63.158 6.01 0.00 0.00 3.71
4896 5091 1.661341 CTTCTGTCACAGCTATGGCC 58.339 55.000 0.00 0.00 39.73 5.36
4966 5167 1.517257 CTTGATTCGTCCTCGCGCT 60.517 57.895 5.56 0.00 36.96 5.92
5031 5244 0.686441 TCGGGATAGTGGAGGTGGTG 60.686 60.000 0.00 0.00 0.00 4.17
5032 5245 1.686325 CGGGATAGTGGAGGTGGTGG 61.686 65.000 0.00 0.00 0.00 4.61
5033 5246 0.620700 GGGATAGTGGAGGTGGTGGT 60.621 60.000 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 236 4.601857 TCCCTTCTTCCTCAACACCTATTT 59.398 41.667 0.00 0.00 0.00 1.40
275 276 1.871080 CAGATAGTTCGGCCCATGAC 58.129 55.000 0.00 0.00 0.00 3.06
291 292 4.502105 TTCCAAGCAGTTATATGGCAGA 57.498 40.909 0.00 0.00 32.87 4.26
433 435 4.566907 GGGTTTTGATGCTCCTAGGTGTAA 60.567 45.833 9.08 0.00 0.00 2.41
448 456 4.041691 CCAGTTAAGGAGAGAGGGTTTTGA 59.958 45.833 0.00 0.00 0.00 2.69
552 563 6.484288 TGGTTATCATGATGAGAAACTTGGT 58.516 36.000 17.49 0.00 36.35 3.67
614 628 7.718334 TGGACACTATGATGAGAGAGTAAAA 57.282 36.000 0.00 0.00 0.00 1.52
635 649 9.527157 TGAATAGGTTCAGTTTGAAAATATGGA 57.473 29.630 0.00 0.00 38.22 3.41
679 693 9.137459 TGTTGTTAAATGATAGTCTGGGAAAAA 57.863 29.630 0.00 0.00 0.00 1.94
741 755 3.385755 AGTTTCATGCTGCAAGAACCTTT 59.614 39.130 18.66 3.74 34.07 3.11
772 786 8.886719 CAGAGACTTGCTGAAAATATATTGTCA 58.113 33.333 15.99 15.99 35.39 3.58
781 795 3.911661 GCACAGAGACTTGCTGAAAAT 57.088 42.857 0.00 0.00 36.86 1.82
799 813 0.878416 GCCCGTTGTGTCAAATAGCA 59.122 50.000 0.00 0.00 0.00 3.49
802 816 1.609555 GTTGGCCCGTTGTGTCAAATA 59.390 47.619 0.00 0.00 0.00 1.40
810 824 7.729124 ATATATATACTAGTTGGCCCGTTGT 57.271 36.000 0.00 0.00 0.00 3.32
839 856 4.583489 ACTGACCGACTTCTTCTTCTGTTA 59.417 41.667 0.00 0.00 0.00 2.41
847 864 1.135632 CCTCGACTGACCGACTTCTTC 60.136 57.143 0.00 0.00 34.56 2.87
850 867 1.397692 CTACCTCGACTGACCGACTTC 59.602 57.143 0.00 0.00 34.56 3.01
851 868 1.451067 CTACCTCGACTGACCGACTT 58.549 55.000 0.00 0.00 34.56 3.01
1030 1051 0.408700 AGGGGTTGAGTCGTACCTCT 59.591 55.000 10.15 10.15 40.47 3.69
1078 1099 0.168128 GTGAACCGAGGCCAAATTCG 59.832 55.000 5.01 5.11 36.62 3.34
1079 1100 0.168128 CGTGAACCGAGGCCAAATTC 59.832 55.000 5.01 3.67 39.56 2.17
1099 1120 1.204467 GCGCAAATTGGGAAAGGATCA 59.796 47.619 14.39 0.00 31.21 2.92
1367 1388 8.383318 TGGTATACTCTGACCTAATAACGTAC 57.617 38.462 2.25 0.00 36.62 3.67
1370 1395 7.938715 ACTTGGTATACTCTGACCTAATAACG 58.061 38.462 2.25 0.00 36.62 3.18
1508 1533 8.575649 TTGAACCTTAAATCAGAAGATAACCC 57.424 34.615 0.00 0.00 33.08 4.11
1545 1570 9.849166 AAAATTAGTACCATTCAATTTACACCG 57.151 29.630 0.00 0.00 31.97 4.94
1626 1652 7.126726 ACAGGTATACAACAGATAAGGGCTTTA 59.873 37.037 5.01 0.00 0.00 1.85
1628 1654 5.428783 ACAGGTATACAACAGATAAGGGCTT 59.571 40.000 5.01 0.00 0.00 4.35
1636 1662 6.294564 CCGTGCTATACAGGTATACAACAGAT 60.295 42.308 5.01 0.00 32.08 2.90
1637 1663 5.009310 CCGTGCTATACAGGTATACAACAGA 59.991 44.000 5.01 0.00 32.08 3.41
1642 1668 5.360429 TCAAACCGTGCTATACAGGTATACA 59.640 40.000 5.01 0.00 35.91 2.29
1643 1669 5.689068 GTCAAACCGTGCTATACAGGTATAC 59.311 44.000 0.00 0.00 35.91 1.47
1644 1670 5.360429 TGTCAAACCGTGCTATACAGGTATA 59.640 40.000 0.00 0.00 35.91 1.47
1645 1671 4.160814 TGTCAAACCGTGCTATACAGGTAT 59.839 41.667 0.00 0.00 35.91 2.73
1646 1672 3.510753 TGTCAAACCGTGCTATACAGGTA 59.489 43.478 0.00 0.00 35.91 3.08
1647 1673 2.300723 TGTCAAACCGTGCTATACAGGT 59.699 45.455 0.00 0.00 37.65 4.00
1648 1674 2.967362 TGTCAAACCGTGCTATACAGG 58.033 47.619 0.00 0.00 0.00 4.00
1649 1675 4.506654 GGTATGTCAAACCGTGCTATACAG 59.493 45.833 0.00 0.00 32.10 2.74
1681 1707 7.315890 TGTGTATTATGATAGAATGAGCGGAG 58.684 38.462 0.00 0.00 0.00 4.63
1685 1711 8.535592 GCGTATGTGTATTATGATAGAATGAGC 58.464 37.037 0.00 0.00 0.00 4.26
1686 1712 9.794685 AGCGTATGTGTATTATGATAGAATGAG 57.205 33.333 0.00 0.00 0.00 2.90
1687 1713 9.788960 GAGCGTATGTGTATTATGATAGAATGA 57.211 33.333 0.00 0.00 0.00 2.57
1737 1768 3.388676 TCCCCGAGTTTCAACAACTTCTA 59.611 43.478 0.00 0.00 0.00 2.10
1738 1769 2.171870 TCCCCGAGTTTCAACAACTTCT 59.828 45.455 0.00 0.00 0.00 2.85
1739 1770 2.548480 CTCCCCGAGTTTCAACAACTTC 59.452 50.000 0.00 0.00 0.00 3.01
1756 1787 2.930826 TCAGTCAAACCTCAACTCCC 57.069 50.000 0.00 0.00 0.00 4.30
1779 1810 7.775561 AGAATAGTATTTCCCTCCATGTTTCAC 59.224 37.037 0.00 0.00 0.00 3.18
1857 1888 8.528643 GGCTTACATGGTTTTCTATAAAAGGTT 58.471 33.333 0.00 0.00 35.29 3.50
1897 1928 3.303791 CCGAACCTGCAAAGTTGAACTAC 60.304 47.826 6.52 0.00 0.00 2.73
1908 1939 1.906574 AGATAACCTCCGAACCTGCAA 59.093 47.619 0.00 0.00 0.00 4.08
1917 1948 4.991687 GCTTCAGGAATTAGATAACCTCCG 59.008 45.833 0.00 0.00 0.00 4.63
1918 1949 4.991687 CGCTTCAGGAATTAGATAACCTCC 59.008 45.833 0.00 0.00 0.00 4.30
1922 1953 5.810587 TGACACGCTTCAGGAATTAGATAAC 59.189 40.000 0.00 0.00 0.00 1.89
1924 1955 5.592104 TGACACGCTTCAGGAATTAGATA 57.408 39.130 0.00 0.00 0.00 1.98
1938 1969 3.699538 TCAATACCTACAGATGACACGCT 59.300 43.478 0.00 0.00 0.00 5.07
1939 1970 4.041740 TCAATACCTACAGATGACACGC 57.958 45.455 0.00 0.00 0.00 5.34
1940 1971 5.500645 TCTCAATACCTACAGATGACACG 57.499 43.478 0.00 0.00 0.00 4.49
1970 2001 1.985159 ACCTCTTGCTGTAATGTCCCA 59.015 47.619 0.00 0.00 0.00 4.37
1982 2013 6.371548 TGTGATTAAACATACAGACCTCTTGC 59.628 38.462 0.00 0.00 0.00 4.01
2019 2050 8.986477 AGCATTTTATTTCTCATTAACCACAC 57.014 30.769 0.00 0.00 0.00 3.82
2036 2068 6.436847 TCATTTCCATTGACCTGAGCATTTTA 59.563 34.615 0.00 0.00 0.00 1.52
2049 2081 8.554835 TGAACGTATAAAGTCATTTCCATTGA 57.445 30.769 0.00 0.00 0.00 2.57
2050 2082 8.450964 ACTGAACGTATAAAGTCATTTCCATTG 58.549 33.333 0.00 0.00 0.00 2.82
2052 2084 7.822334 TGACTGAACGTATAAAGTCATTTCCAT 59.178 33.333 14.78 0.00 43.01 3.41
2053 2085 7.156000 TGACTGAACGTATAAAGTCATTTCCA 58.844 34.615 14.78 0.00 43.01 3.53
2054 2086 7.591006 TGACTGAACGTATAAAGTCATTTCC 57.409 36.000 14.78 0.00 43.01 3.13
2080 2118 4.925068 AGCAAGCTTTAACAACTTGTCAG 58.075 39.130 0.00 0.00 42.20 3.51
2098 2136 4.350368 TGTGAAGAACTACATGGAGCAA 57.650 40.909 4.32 0.00 0.00 3.91
2164 2202 2.288152 ACTGGCACAAACAAAATAGCGG 60.288 45.455 0.00 0.00 38.70 5.52
2166 2204 4.367450 TCAACTGGCACAAACAAAATAGC 58.633 39.130 0.00 0.00 38.70 2.97
2174 2212 3.976169 TGCTTATTCAACTGGCACAAAC 58.024 40.909 0.00 0.00 38.70 2.93
2180 2218 3.756434 TGGTTACTGCTTATTCAACTGGC 59.244 43.478 0.00 0.00 0.00 4.85
2232 2270 2.952310 GCAACCAGTCTCTTTTCCTGTT 59.048 45.455 0.00 0.00 0.00 3.16
2233 2271 2.173569 AGCAACCAGTCTCTTTTCCTGT 59.826 45.455 0.00 0.00 0.00 4.00
2234 2272 2.551459 CAGCAACCAGTCTCTTTTCCTG 59.449 50.000 0.00 0.00 0.00 3.86
2248 2286 4.301628 CAGTCCTTTTGATTTCAGCAACC 58.698 43.478 0.00 0.00 0.00 3.77
2312 2350 9.373750 CATGATTTAGAACAATATTAGTGCGTG 57.626 33.333 0.00 0.00 0.00 5.34
2323 2361 7.886629 ACCATACTGCATGATTTAGAACAAT 57.113 32.000 0.00 0.00 36.69 2.71
2370 2408 2.487762 CAGAATTTTAGTTGCCGCCTGA 59.512 45.455 0.00 0.00 0.00 3.86
2376 2414 1.135112 CGGGCCAGAATTTTAGTTGCC 60.135 52.381 4.39 0.00 36.68 4.52
2463 2501 1.813337 CACCTGTGTGTGTGTCGCA 60.813 57.895 0.00 0.00 37.72 5.10
2536 2575 3.006323 AGGACATAATGCGCCAACAAAAA 59.994 39.130 4.18 0.00 0.00 1.94
2545 2584 0.512952 CGCCTAAGGACATAATGCGC 59.487 55.000 0.00 0.00 33.82 6.09
2548 2587 3.402110 TGCATCGCCTAAGGACATAATG 58.598 45.455 0.00 0.00 0.00 1.90
2550 2589 2.224281 CCTGCATCGCCTAAGGACATAA 60.224 50.000 0.00 0.00 30.92 1.90
2552 2591 0.107456 CCTGCATCGCCTAAGGACAT 59.893 55.000 0.00 0.00 30.92 3.06
2600 2639 0.924090 CCATCGCTTTACTCGCACTC 59.076 55.000 0.00 0.00 0.00 3.51
2686 2727 6.335777 ACCGTGATAGTATACACTTGGTTTC 58.664 40.000 5.50 0.00 36.14 2.78
2752 2794 2.294233 TGCAGCTCAGTTTAAGCAAAGG 59.706 45.455 0.00 0.00 42.35 3.11
2758 2800 6.486253 TTGTATTCTGCAGCTCAGTTTAAG 57.514 37.500 9.47 0.00 43.32 1.85
2760 2802 7.452880 AAATTGTATTCTGCAGCTCAGTTTA 57.547 32.000 9.47 0.00 43.32 2.01
2761 2803 5.972107 AATTGTATTCTGCAGCTCAGTTT 57.028 34.783 9.47 0.00 43.32 2.66
2762 2804 5.972107 AAATTGTATTCTGCAGCTCAGTT 57.028 34.783 9.47 5.65 43.32 3.16
2763 2805 5.242393 ACAAAATTGTATTCTGCAGCTCAGT 59.758 36.000 9.47 0.00 40.65 3.41
2767 2809 7.175641 ACTCTTACAAAATTGTATTCTGCAGCT 59.824 33.333 9.47 0.84 42.66 4.24
2777 2819 8.452534 ACGTGTTTCAACTCTTACAAAATTGTA 58.547 29.630 1.96 1.96 42.35 2.41
2865 2907 4.237724 GCTTTTGGAACTCTTGCATTACC 58.762 43.478 0.00 0.00 0.00 2.85
2877 2919 1.405105 TGTGCTGACTGCTTTTGGAAC 59.595 47.619 5.87 0.00 43.37 3.62
2914 2956 3.617263 GGAAGTACTGGACATAAGTTGCG 59.383 47.826 0.00 0.00 0.00 4.85
2925 2967 8.696374 CATTCTATGAAAGTAGGAAGTACTGGA 58.304 37.037 0.00 0.00 41.50 3.86
2930 2972 9.547753 GCAATCATTCTATGAAAGTAGGAAGTA 57.452 33.333 0.00 0.00 43.50 2.24
2931 2973 8.270744 AGCAATCATTCTATGAAAGTAGGAAGT 58.729 33.333 0.00 0.00 43.50 3.01
2932 2974 8.674263 AGCAATCATTCTATGAAAGTAGGAAG 57.326 34.615 0.00 0.00 43.50 3.46
2933 2975 9.113838 GAAGCAATCATTCTATGAAAGTAGGAA 57.886 33.333 0.00 0.00 43.50 3.36
2984 3026 2.165998 GCTTGTGAGCTTCCCAGAAAT 58.834 47.619 0.00 0.00 45.65 2.17
3007 3049 5.456921 AATCTAACACAGGAACCCATCAT 57.543 39.130 0.00 0.00 0.00 2.45
3022 3066 7.326063 GGTGCATACACTTTGTCAAAATCTAAC 59.674 37.037 0.00 0.00 46.57 2.34
3030 3074 2.293122 GCAGGTGCATACACTTTGTCAA 59.707 45.455 0.00 0.00 46.57 3.18
3051 3095 9.770097 ACAAATAATCAGGATAGTCAGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
3055 3099 7.791029 TGCACAAATAATCAGGATAGTCAGTA 58.209 34.615 0.00 0.00 0.00 2.74
3068 3112 6.349973 TCATCTCGTTCTGCACAAATAATC 57.650 37.500 0.00 0.00 0.00 1.75
3069 3113 6.317140 ACATCATCTCGTTCTGCACAAATAAT 59.683 34.615 0.00 0.00 0.00 1.28
3096 3140 6.093404 GTCTAAGACATTGTCGATTGAGTCA 58.907 40.000 11.01 0.00 37.67 3.41
3126 3170 2.259917 TCAGTTTCATCCTCAGCCTGA 58.740 47.619 0.00 0.00 0.00 3.86
3138 3182 3.815401 GGTTAGCAAGCTCTTCAGTTTCA 59.185 43.478 0.00 0.00 0.00 2.69
3394 3438 3.420482 CCTTTGGGAGCCGGGGAT 61.420 66.667 2.18 0.00 33.58 3.85
3398 3442 0.034089 ATTCTTCCTTTGGGAGCCGG 60.034 55.000 0.00 0.00 43.29 6.13
3560 3604 8.963725 TCCGTATCTAGACAAATCTAAGACAAA 58.036 33.333 0.00 0.00 36.98 2.83
3613 3657 9.586732 AAGCTTGTCTTAGATCTGTCTAGATAT 57.413 33.333 5.18 0.00 37.21 1.63
3665 3709 2.807967 TCCATCGCAGTTTGAAGTTCAG 59.192 45.455 5.56 0.00 0.00 3.02
3919 4060 0.798776 GTGTCAGCAATGGTCGAAGG 59.201 55.000 0.00 0.00 0.00 3.46
3984 4125 5.300286 AGGCATAGGTGTAAATTCATTGAGC 59.700 40.000 0.00 0.00 0.00 4.26
4005 4178 6.633500 TTAACATGGCAACTTATATCAGGC 57.367 37.500 0.00 0.00 37.61 4.85
4242 4417 3.583086 CTCCCTTAAGGTCAAACTCTGGA 59.417 47.826 20.22 5.33 36.75 3.86
4254 4429 4.700692 GCTTTTTACAGGACTCCCTTAAGG 59.299 45.833 15.14 15.14 42.02 2.69
4343 4518 6.300703 AGCACTGTAACTACCCAAACAAATA 58.699 36.000 0.00 0.00 0.00 1.40
4409 4586 4.928520 ATGGGCTAGGGGGAGGGC 62.929 72.222 0.00 0.00 0.00 5.19
4410 4587 2.856000 CATGGGCTAGGGGGAGGG 60.856 72.222 0.00 0.00 0.00 4.30
4411 4588 2.039405 ACATGGGCTAGGGGGAGG 60.039 66.667 0.00 0.00 0.00 4.30
4412 4589 2.455565 CCACATGGGCTAGGGGGAG 61.456 68.421 0.00 0.00 0.00 4.30
4413 4590 2.368192 CCACATGGGCTAGGGGGA 60.368 66.667 0.00 0.00 0.00 4.81
4423 4600 1.294138 CAAAGGCAAGCCCACATGG 59.706 57.895 7.62 0.00 36.58 3.66
4424 4601 1.186917 TCCAAAGGCAAGCCCACATG 61.187 55.000 7.62 2.04 36.58 3.21
4425 4602 1.155859 TCCAAAGGCAAGCCCACAT 59.844 52.632 7.62 0.00 36.58 3.21
4426 4603 1.832167 GTCCAAAGGCAAGCCCACA 60.832 57.895 7.62 0.00 36.58 4.17
4427 4604 1.187567 ATGTCCAAAGGCAAGCCCAC 61.188 55.000 7.62 0.00 36.58 4.61
4428 4605 0.899717 GATGTCCAAAGGCAAGCCCA 60.900 55.000 7.62 0.00 36.58 5.36
4429 4606 0.899717 TGATGTCCAAAGGCAAGCCC 60.900 55.000 7.62 0.00 36.58 5.19
4430 4607 0.244721 GTGATGTCCAAAGGCAAGCC 59.755 55.000 2.02 2.02 0.00 4.35
4431 4608 1.251251 AGTGATGTCCAAAGGCAAGC 58.749 50.000 0.00 0.00 0.00 4.01
4432 4609 2.029649 CCAAGTGATGTCCAAAGGCAAG 60.030 50.000 0.00 0.00 0.00 4.01
4433 4610 1.962807 CCAAGTGATGTCCAAAGGCAA 59.037 47.619 0.00 0.00 0.00 4.52
4434 4611 1.619654 CCAAGTGATGTCCAAAGGCA 58.380 50.000 0.00 0.00 0.00 4.75
4435 4612 0.890683 CCCAAGTGATGTCCAAAGGC 59.109 55.000 0.00 0.00 0.00 4.35
4436 4613 0.890683 GCCCAAGTGATGTCCAAAGG 59.109 55.000 0.00 0.00 0.00 3.11
4437 4614 0.890683 GGCCCAAGTGATGTCCAAAG 59.109 55.000 0.00 0.00 0.00 2.77
4438 4615 0.482446 AGGCCCAAGTGATGTCCAAA 59.518 50.000 0.00 0.00 0.00 3.28
4439 4616 0.251297 CAGGCCCAAGTGATGTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
4440 4617 1.379916 CAGGCCCAAGTGATGTCCA 59.620 57.895 0.00 0.00 0.00 4.02
4441 4618 1.379044 CCAGGCCCAAGTGATGTCC 60.379 63.158 0.00 0.00 0.00 4.02
4442 4619 2.048603 GCCAGGCCCAAGTGATGTC 61.049 63.158 0.00 0.00 0.00 3.06
4443 4620 2.036256 GCCAGGCCCAAGTGATGT 59.964 61.111 0.00 0.00 0.00 3.06
4444 4621 2.757099 GGCCAGGCCCAAGTGATG 60.757 66.667 21.62 0.00 44.06 3.07
4461 4638 2.507944 CAGAGGATTCCCAGCCGG 59.492 66.667 0.00 0.00 33.88 6.13
4462 4639 2.507944 CCAGAGGATTCCCAGCCG 59.492 66.667 0.00 0.00 33.88 5.52
4463 4640 2.194326 GCCAGAGGATTCCCAGCC 59.806 66.667 0.00 0.00 33.88 4.85
4464 4641 2.194326 GGCCAGAGGATTCCCAGC 59.806 66.667 0.00 0.00 33.88 4.85
4465 4642 1.414061 ATCGGCCAGAGGATTCCCAG 61.414 60.000 2.24 0.00 33.88 4.45
4466 4643 1.384502 ATCGGCCAGAGGATTCCCA 60.385 57.895 2.24 0.00 33.88 4.37
4467 4644 1.072159 CATCGGCCAGAGGATTCCC 59.928 63.158 2.24 0.00 31.12 3.97
4468 4645 1.599240 GCATCGGCCAGAGGATTCC 60.599 63.158 12.33 0.00 31.12 3.01
4469 4646 0.883814 CTGCATCGGCCAGAGGATTC 60.884 60.000 12.33 0.00 40.13 2.52
4470 4647 1.147824 CTGCATCGGCCAGAGGATT 59.852 57.895 12.33 0.00 40.13 3.01
4471 4648 2.827423 CTGCATCGGCCAGAGGAT 59.173 61.111 12.33 0.00 40.13 3.24
4472 4649 4.166888 GCTGCATCGGCCAGAGGA 62.167 66.667 12.33 0.00 40.13 3.71
4473 4650 2.800541 TAGCTGCATCGGCCAGAGG 61.801 63.158 2.24 4.04 40.13 3.69
4474 4651 1.593750 GTAGCTGCATCGGCCAGAG 60.594 63.158 2.24 0.00 40.13 3.35
4475 4652 1.898330 TTGTAGCTGCATCGGCCAGA 61.898 55.000 4.98 0.78 40.13 3.86
4476 4653 1.026182 TTTGTAGCTGCATCGGCCAG 61.026 55.000 4.98 0.00 40.13 4.85
4477 4654 0.394216 ATTTGTAGCTGCATCGGCCA 60.394 50.000 4.98 0.00 40.13 5.36
4478 4655 1.264288 GTATTTGTAGCTGCATCGGCC 59.736 52.381 4.98 0.00 40.13 6.13
4479 4656 2.213499 AGTATTTGTAGCTGCATCGGC 58.787 47.619 4.98 0.00 41.68 5.54
4480 4657 3.002656 CCAAGTATTTGTAGCTGCATCGG 59.997 47.826 4.98 0.00 32.21 4.18
4481 4658 3.002656 CCCAAGTATTTGTAGCTGCATCG 59.997 47.826 4.98 0.00 32.21 3.84
4482 4659 3.243201 GCCCAAGTATTTGTAGCTGCATC 60.243 47.826 4.98 0.00 32.11 3.91
4483 4660 2.689983 GCCCAAGTATTTGTAGCTGCAT 59.310 45.455 4.98 0.00 32.11 3.96
4484 4661 2.091541 GCCCAAGTATTTGTAGCTGCA 58.908 47.619 0.00 0.00 32.11 4.41
4485 4662 2.091541 TGCCCAAGTATTTGTAGCTGC 58.908 47.619 0.00 0.00 34.50 5.25
4486 4663 4.782019 TTTGCCCAAGTATTTGTAGCTG 57.218 40.909 0.00 0.00 34.50 4.24
4487 4664 4.321974 GCTTTTGCCCAAGTATTTGTAGCT 60.322 41.667 10.29 0.00 40.15 3.32
4488 4665 3.926527 GCTTTTGCCCAAGTATTTGTAGC 59.073 43.478 0.00 0.90 40.15 3.58
4489 4666 5.132897 TGCTTTTGCCCAAGTATTTGTAG 57.867 39.130 0.00 0.00 46.87 2.74
4490 4667 5.293560 GTTGCTTTTGCCCAAGTATTTGTA 58.706 37.500 0.00 0.00 46.87 2.41
4491 4668 4.126437 GTTGCTTTTGCCCAAGTATTTGT 58.874 39.130 0.00 0.00 46.87 2.83
4492 4669 3.184178 CGTTGCTTTTGCCCAAGTATTTG 59.816 43.478 0.00 0.00 46.87 2.32
4493 4670 3.068873 TCGTTGCTTTTGCCCAAGTATTT 59.931 39.130 0.00 0.00 46.87 1.40
4494 4671 2.625790 TCGTTGCTTTTGCCCAAGTATT 59.374 40.909 0.00 0.00 46.87 1.89
4495 4672 2.235016 TCGTTGCTTTTGCCCAAGTAT 58.765 42.857 0.00 0.00 46.87 2.12
4496 4673 1.681538 TCGTTGCTTTTGCCCAAGTA 58.318 45.000 0.00 0.00 46.87 2.24
4497 4674 0.820871 TTCGTTGCTTTTGCCCAAGT 59.179 45.000 0.00 0.00 46.87 3.16
4498 4675 1.208259 GTTCGTTGCTTTTGCCCAAG 58.792 50.000 0.00 0.00 46.87 3.61
4499 4676 0.532573 TGTTCGTTGCTTTTGCCCAA 59.467 45.000 0.00 0.00 46.87 4.12
4500 4677 0.532573 TTGTTCGTTGCTTTTGCCCA 59.467 45.000 0.00 0.00 46.87 5.36
4501 4678 0.927537 GTTGTTCGTTGCTTTTGCCC 59.072 50.000 0.00 0.00 46.87 5.36
4502 4679 0.927537 GGTTGTTCGTTGCTTTTGCC 59.072 50.000 0.00 0.00 46.87 4.52
4504 4681 4.226761 GGATAGGTTGTTCGTTGCTTTTG 58.773 43.478 0.00 0.00 0.00 2.44
4505 4682 3.886505 TGGATAGGTTGTTCGTTGCTTTT 59.113 39.130 0.00 0.00 0.00 2.27
4506 4683 3.482436 TGGATAGGTTGTTCGTTGCTTT 58.518 40.909 0.00 0.00 0.00 3.51
4507 4684 3.074412 CTGGATAGGTTGTTCGTTGCTT 58.926 45.455 0.00 0.00 0.00 3.91
4508 4685 2.038557 ACTGGATAGGTTGTTCGTTGCT 59.961 45.455 0.00 0.00 0.00 3.91
4509 4686 2.159627 CACTGGATAGGTTGTTCGTTGC 59.840 50.000 0.00 0.00 0.00 4.17
4510 4687 2.742053 CCACTGGATAGGTTGTTCGTTG 59.258 50.000 0.00 0.00 0.00 4.10
4511 4688 2.635915 TCCACTGGATAGGTTGTTCGTT 59.364 45.455 0.00 0.00 0.00 3.85
4512 4689 2.253610 TCCACTGGATAGGTTGTTCGT 58.746 47.619 0.00 0.00 0.00 3.85
4513 4690 3.118775 TGATCCACTGGATAGGTTGTTCG 60.119 47.826 10.79 0.00 43.27 3.95
4514 4691 4.192317 GTGATCCACTGGATAGGTTGTTC 58.808 47.826 10.79 0.00 43.27 3.18
4515 4692 3.369471 CGTGATCCACTGGATAGGTTGTT 60.369 47.826 10.79 0.00 43.27 2.83
4516 4693 2.168521 CGTGATCCACTGGATAGGTTGT 59.831 50.000 10.79 0.00 43.27 3.32
4517 4694 2.483714 CCGTGATCCACTGGATAGGTTG 60.484 54.545 10.79 0.30 43.27 3.77
4518 4695 1.762957 CCGTGATCCACTGGATAGGTT 59.237 52.381 10.79 0.00 43.27 3.50
4519 4696 1.063190 TCCGTGATCCACTGGATAGGT 60.063 52.381 10.79 0.00 43.27 3.08
4520 4697 1.341531 GTCCGTGATCCACTGGATAGG 59.658 57.143 10.79 13.79 43.27 2.57
4521 4698 1.341531 GGTCCGTGATCCACTGGATAG 59.658 57.143 10.79 5.75 43.27 2.08
4522 4699 1.342574 TGGTCCGTGATCCACTGGATA 60.343 52.381 10.79 0.00 43.27 2.59
4523 4700 0.617535 TGGTCCGTGATCCACTGGAT 60.618 55.000 10.61 10.61 46.28 3.41
4524 4701 0.834261 TTGGTCCGTGATCCACTGGA 60.834 55.000 0.00 0.00 35.78 3.86
4525 4702 0.673644 GTTGGTCCGTGATCCACTGG 60.674 60.000 0.00 0.00 33.12 4.00
4526 4703 0.673644 GGTTGGTCCGTGATCCACTG 60.674 60.000 0.00 0.00 33.12 3.66
4527 4704 1.677552 GGTTGGTCCGTGATCCACT 59.322 57.895 0.00 0.00 33.12 4.00
4528 4705 1.376812 GGGTTGGTCCGTGATCCAC 60.377 63.158 0.00 0.00 37.00 4.02
4529 4706 2.949909 CGGGTTGGTCCGTGATCCA 61.950 63.158 0.00 0.00 44.60 3.41
4530 4707 2.125269 CGGGTTGGTCCGTGATCC 60.125 66.667 0.00 0.00 44.60 3.36
4547 4724 2.517484 AAAAGAGGGTAGCCGCCGTC 62.517 60.000 11.37 8.33 42.09 4.79
4548 4725 2.517484 GAAAAGAGGGTAGCCGCCGT 62.517 60.000 11.37 0.15 0.00 5.68
4549 4726 1.814169 GAAAAGAGGGTAGCCGCCG 60.814 63.158 11.37 0.00 0.00 6.46
4550 4727 1.814169 CGAAAAGAGGGTAGCCGCC 60.814 63.158 11.37 4.72 0.00 6.13
4551 4728 1.814169 CCGAAAAGAGGGTAGCCGC 60.814 63.158 6.59 6.59 0.00 6.53
4552 4729 0.459759 GTCCGAAAAGAGGGTAGCCG 60.460 60.000 5.06 0.00 0.00 5.52
4553 4730 0.459759 CGTCCGAAAAGAGGGTAGCC 60.460 60.000 1.60 1.60 0.00 3.93
4554 4731 0.459759 CCGTCCGAAAAGAGGGTAGC 60.460 60.000 0.00 0.00 37.10 3.58
4555 4732 0.175073 CCCGTCCGAAAAGAGGGTAG 59.825 60.000 0.00 0.00 39.65 3.18
4556 4733 1.259840 CCCCGTCCGAAAAGAGGGTA 61.260 60.000 0.00 0.00 39.65 3.69
4557 4734 2.590114 CCCCGTCCGAAAAGAGGGT 61.590 63.158 0.00 0.00 39.65 4.34
4558 4735 2.267961 CCCCGTCCGAAAAGAGGG 59.732 66.667 0.00 0.00 40.72 4.30
4559 4736 2.436115 GCCCCGTCCGAAAAGAGG 60.436 66.667 0.00 0.00 0.00 3.69
4560 4737 1.003718 AAGCCCCGTCCGAAAAGAG 60.004 57.895 0.00 0.00 0.00 2.85
4561 4738 1.302192 CAAGCCCCGTCCGAAAAGA 60.302 57.895 0.00 0.00 0.00 2.52
4562 4739 2.978018 GCAAGCCCCGTCCGAAAAG 61.978 63.158 0.00 0.00 0.00 2.27
4563 4740 2.981350 GCAAGCCCCGTCCGAAAA 60.981 61.111 0.00 0.00 0.00 2.29
4608 4785 5.367060 AGATAAAGAATTAGCGAAGGGGAGT 59.633 40.000 0.00 0.00 32.69 3.85
4728 4906 1.546998 GGGAAGGCGAAAAAGGAGGAA 60.547 52.381 0.00 0.00 0.00 3.36
4766 4948 3.496875 CTCGATGCCTCCGCTCCAG 62.497 68.421 0.00 0.00 35.36 3.86
4767 4949 3.531207 CTCGATGCCTCCGCTCCA 61.531 66.667 0.00 0.00 35.36 3.86
4851 5036 2.670934 CAACTCAGGCTTGCCGCT 60.671 61.111 5.95 0.00 39.13 5.52
4946 5147 1.743855 GCGCGAGGACGAATCAAGAC 61.744 60.000 12.10 0.00 42.66 3.01
4966 5167 1.742308 ACTCCAAGACCTGGCCTTTA 58.258 50.000 3.32 0.00 45.98 1.85
4989 5199 1.976132 GAGCTCCACCATGGCTGCTA 61.976 60.000 13.04 0.00 43.31 3.49
4990 5200 3.336568 AGCTCCACCATGGCTGCT 61.337 61.111 13.04 13.25 40.36 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.