Multiple sequence alignment - TraesCS1A01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G153300 chr1A 100.000 5874 0 0 1 5874 267140996 267146869 0.000000e+00 10848.0
1 TraesCS1A01G153300 chr1B 92.456 2691 97 25 800 3458 305178387 305175771 0.000000e+00 3747.0
2 TraesCS1A01G153300 chr1B 95.640 1445 45 5 3879 5305 305175396 305173952 0.000000e+00 2303.0
3 TraesCS1A01G153300 chr1B 97.800 500 6 1 5380 5874 305173954 305173455 0.000000e+00 857.0
4 TraesCS1A01G153300 chr1B 83.866 657 77 13 2 647 305179104 305178466 3.030000e-167 599.0
5 TraesCS1A01G153300 chr1B 96.512 344 10 1 3457 3798 305175742 305175399 8.540000e-158 568.0
6 TraesCS1A01G153300 chr1D 95.643 1446 42 7 3878 5305 211685142 211686584 0.000000e+00 2302.0
7 TraesCS1A01G153300 chr1D 95.676 1272 31 12 795 2058 211681875 211683130 0.000000e+00 2023.0
8 TraesCS1A01G153300 chr1D 92.928 806 43 9 2056 2855 211683198 211683995 0.000000e+00 1160.0
9 TraesCS1A01G153300 chr1D 90.840 655 22 6 2827 3458 211683930 211684569 0.000000e+00 843.0
10 TraesCS1A01G153300 chr1D 97.006 501 6 3 5380 5874 211686582 211687079 0.000000e+00 833.0
11 TraesCS1A01G153300 chr1D 84.722 720 66 15 2 690 211681122 211681828 0.000000e+00 680.0
12 TraesCS1A01G153300 chr1D 97.030 202 6 0 3596 3797 211684941 211685142 2.030000e-89 340.0
13 TraesCS1A01G153300 chr1D 96.154 156 4 2 3457 3610 211684598 211684753 2.720000e-63 254.0
14 TraesCS1A01G153300 chr1D 95.604 91 4 0 3793 3883 341527484 341527574 4.740000e-31 147.0
15 TraesCS1A01G153300 chr1D 100.000 30 0 0 532 561 183927008 183927037 8.220000e-04 56.5
16 TraesCS1A01G153300 chr1D 100.000 30 0 0 532 561 401599697 401599726 8.220000e-04 56.5
17 TraesCS1A01G153300 chr7B 79.040 854 129 25 2235 3076 51766837 51766022 1.860000e-149 540.0
18 TraesCS1A01G153300 chr7B 85.811 148 20 1 2872 3019 467448835 467448689 7.880000e-34 156.0
19 TraesCS1A01G153300 chr7B 92.453 106 7 1 2978 3082 393390341 393390446 3.670000e-32 150.0
20 TraesCS1A01G153300 chr7B 87.719 57 7 0 2298 2354 33072754 33072698 3.800000e-07 67.6
21 TraesCS1A01G153300 chr2D 78.663 703 112 22 2355 3021 630083752 630083052 3.250000e-117 433.0
22 TraesCS1A01G153300 chr2D 78.088 680 99 34 2377 3021 629977535 629976871 9.230000e-103 385.0
23 TraesCS1A01G153300 chr2D 74.719 712 114 31 2355 3021 630045299 630044609 2.100000e-64 257.0
24 TraesCS1A01G153300 chr2D 95.604 91 4 0 3794 3884 420176006 420176096 4.740000e-31 147.0
25 TraesCS1A01G153300 chr2B 79.144 374 46 23 2679 3021 773006771 773006399 4.580000e-56 230.0
26 TraesCS1A01G153300 chr2B 87.273 165 11 3 2857 3021 66556653 66556499 4.680000e-41 180.0
27 TraesCS1A01G153300 chr2B 91.463 82 6 1 5305 5385 693753368 693753287 1.730000e-20 111.0
28 TraesCS1A01G153300 chr2B 91.176 68 5 1 3009 3076 66556491 66556425 2.250000e-14 91.6
29 TraesCS1A01G153300 chr3A 87.432 183 19 3 2115 2296 461843853 461843674 2.150000e-49 207.0
30 TraesCS1A01G153300 chr3A 91.667 84 6 1 5300 5382 430526422 430526505 1.340000e-21 115.0
31 TraesCS1A01G153300 chr3D 87.432 183 18 3 2115 2296 341490799 341490977 7.720000e-49 206.0
32 TraesCS1A01G153300 chr3D 82.286 175 26 5 2100 2274 289105924 289105755 4.740000e-31 147.0
33 TraesCS1A01G153300 chr2A 82.988 241 18 11 2857 3076 43143038 43142800 4.640000e-46 196.0
34 TraesCS1A01G153300 chr2A 84.916 179 21 5 2119 2293 734097000 734097176 6.050000e-40 176.0
35 TraesCS1A01G153300 chr2A 91.589 107 8 1 3785 3891 553498181 553498076 4.740000e-31 147.0
36 TraesCS1A01G153300 chr6D 82.569 218 29 8 2113 2325 415457569 415457782 3.620000e-42 183.0
37 TraesCS1A01G153300 chr6D 93.750 96 6 0 3796 3891 6968019 6967924 1.710000e-30 145.0
38 TraesCS1A01G153300 chr6D 81.707 82 13 2 504 583 262417586 262417667 3.800000e-07 67.6
39 TraesCS1A01G153300 chr4D 97.753 89 2 0 3793 3881 28237897 28237809 2.830000e-33 154.0
40 TraesCS1A01G153300 chr4D 91.566 83 4 3 5304 5383 484149208 484149290 1.730000e-20 111.0
41 TraesCS1A01G153300 chr7A 96.667 90 3 0 3796 3885 83936191 83936102 3.670000e-32 150.0
42 TraesCS1A01G153300 chr7A 83.436 163 22 5 2115 2274 250329596 250329756 4.740000e-31 147.0
43 TraesCS1A01G153300 chr7A 94.203 69 4 0 3006 3074 446355463 446355531 8.050000e-19 106.0
44 TraesCS1A01G153300 chr7A 91.549 71 5 1 3006 3076 20101285 20101354 4.850000e-16 97.1
45 TraesCS1A01G153300 chr4A 92.233 103 7 1 3780 3881 570916255 570916153 1.710000e-30 145.0
46 TraesCS1A01G153300 chr5D 92.233 103 5 3 3788 3889 472285512 472285612 6.140000e-30 143.0
47 TraesCS1A01G153300 chr5D 93.506 77 5 0 2945 3021 307915887 307915963 1.340000e-21 115.0
48 TraesCS1A01G153300 chr5D 91.566 83 4 2 5304 5383 277244673 277244591 1.730000e-20 111.0
49 TraesCS1A01G153300 chr5D 88.298 94 7 4 5305 5395 277244590 277244682 6.220000e-20 110.0
50 TraesCS1A01G153300 chr5D 90.476 84 4 2 5306 5385 496271888 496271805 2.240000e-19 108.0
51 TraesCS1A01G153300 chr3B 81.818 176 25 7 2100 2274 381757002 381756833 2.210000e-29 141.0
52 TraesCS1A01G153300 chr3B 92.683 82 5 1 5305 5385 465505715 465505796 3.720000e-22 117.0
53 TraesCS1A01G153300 chr3B 92.405 79 5 1 5306 5383 465505794 465505716 1.730000e-20 111.0
54 TraesCS1A01G153300 chr3B 94.643 56 3 0 3007 3062 555095153 555095098 2.920000e-13 87.9
55 TraesCS1A01G153300 chr3B 100.000 30 0 0 532 561 773629571 773629600 8.220000e-04 56.5
56 TraesCS1A01G153300 chr5A 90.566 106 6 4 3787 3891 625907394 625907496 2.850000e-28 137.0
57 TraesCS1A01G153300 chr6B 91.765 85 1 4 5307 5385 46759128 46759212 4.810000e-21 113.0
58 TraesCS1A01G153300 chr6A 90.909 44 3 1 512 554 322721156 322721113 2.290000e-04 58.4
59 TraesCS1A01G153300 chrUn 100.000 30 0 0 532 561 260707912 260707883 8.220000e-04 56.5
60 TraesCS1A01G153300 chrUn 100.000 30 0 0 532 561 333610293 333610264 8.220000e-04 56.5
61 TraesCS1A01G153300 chr5B 100.000 30 0 0 532 561 444769295 444769266 8.220000e-04 56.5
62 TraesCS1A01G153300 chr5B 81.081 74 11 3 526 597 639123667 639123595 8.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G153300 chr1A 267140996 267146869 5873 False 10848.000 10848 100.000000 1 5874 1 chr1A.!!$F1 5873
1 TraesCS1A01G153300 chr1B 305173455 305179104 5649 True 1614.800 3747 93.254800 2 5874 5 chr1B.!!$R1 5872
2 TraesCS1A01G153300 chr1D 211681122 211687079 5957 False 1054.375 2302 93.749875 2 5874 8 chr1D.!!$F4 5872
3 TraesCS1A01G153300 chr7B 51766022 51766837 815 True 540.000 540 79.040000 2235 3076 1 chr7B.!!$R2 841
4 TraesCS1A01G153300 chr2D 630083052 630083752 700 True 433.000 433 78.663000 2355 3021 1 chr2D.!!$R3 666
5 TraesCS1A01G153300 chr2D 629976871 629977535 664 True 385.000 385 78.088000 2377 3021 1 chr2D.!!$R1 644
6 TraesCS1A01G153300 chr2D 630044609 630045299 690 True 257.000 257 74.719000 2355 3021 1 chr2D.!!$R2 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 727 0.030369 GGACACGTAGCCGGATAGTG 59.970 60.000 20.53 20.53 38.78 2.74 F
691 728 0.030369 GACACGTAGCCGGATAGTGG 59.970 60.000 23.73 11.06 38.78 4.00 F
1255 1300 0.244994 CAGCAGTGAAGTAGAGCGGT 59.755 55.000 0.00 0.00 0.00 5.68 F
2434 2560 0.832135 TCCTCCTCTGAGTTTGCCGT 60.832 55.000 3.66 0.00 36.86 5.68 F
2950 3168 0.890683 GTGCAGCTGCCCTGTTTTAT 59.109 50.000 34.64 0.00 43.71 1.40 F
3168 3414 1.684734 GGCCGTCCTGACTAGGGAA 60.685 63.158 0.00 0.00 44.70 3.97 F
3810 4290 1.854939 TCTAATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1729 0.605589 CGGTCTCCTTGTCTTGCTCT 59.394 55.000 0.00 0.0 0.00 4.09 R
2406 2532 1.377463 CAGAGGAGGACGGACGAGT 60.377 63.158 0.00 0.0 0.00 4.18 R
3106 3352 1.855295 TGCTGGACCATGAATGCAAT 58.145 45.000 3.01 0.0 0.00 3.56 R
3863 4343 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R
3866 4346 0.535797 CAAACTACTCCCTCCGTCCC 59.464 60.000 0.00 0.0 0.00 4.46 R
4386 4867 0.912486 AGGAGATGTGTAAGCCACCC 59.088 55.000 0.00 0.0 43.85 4.61 R
5483 5982 0.838122 ACAGAAGCCAGCCTGTAGGT 60.838 55.000 0.00 0.0 41.38 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.539034 ACCAATTGCAGACCTTACTTTTAAT 57.461 32.000 0.00 0.00 0.00 1.40
47 48 6.398095 ACTTTTAATCTGCCACCTAAAATGC 58.602 36.000 0.00 0.00 0.00 3.56
55 56 5.714333 TCTGCCACCTAAAATGCATTAAGAA 59.286 36.000 13.39 0.00 32.53 2.52
56 57 6.380846 TCTGCCACCTAAAATGCATTAAGAAT 59.619 34.615 13.39 3.01 32.53 2.40
59 60 7.882271 TGCCACCTAAAATGCATTAAGAATTTT 59.118 29.630 13.39 4.78 45.45 1.82
122 124 7.313951 ACTAGCAAGCAAGATCTCAAATAAC 57.686 36.000 0.00 0.00 0.00 1.89
126 128 6.881065 AGCAAGCAAGATCTCAAATAACAGTA 59.119 34.615 0.00 0.00 0.00 2.74
127 129 7.555554 AGCAAGCAAGATCTCAAATAACAGTAT 59.444 33.333 0.00 0.00 0.00 2.12
128 130 7.854916 GCAAGCAAGATCTCAAATAACAGTATC 59.145 37.037 0.00 0.00 0.00 2.24
129 131 8.886719 CAAGCAAGATCTCAAATAACAGTATCA 58.113 33.333 0.00 0.00 0.00 2.15
161 163 8.219868 TGGTTCATCTATTTGTGGTATCATCAT 58.780 33.333 0.00 0.00 0.00 2.45
163 165 9.888878 GTTCATCTATTTGTGGTATCATCATTG 57.111 33.333 0.00 0.00 0.00 2.82
172 174 9.474920 TTTGTGGTATCATCATTGTTTTCTTTC 57.525 29.630 0.00 0.00 0.00 2.62
227 233 1.208293 TGCACACACACTCAACCTGTA 59.792 47.619 0.00 0.00 0.00 2.74
230 236 3.315191 GCACACACACTCAACCTGTAAAT 59.685 43.478 0.00 0.00 0.00 1.40
246 252 8.263940 ACCTGTAAATGTATACACACACATTC 57.736 34.615 7.96 0.00 42.93 2.67
262 268 6.728164 ACACACATTCTATCCCTATAGATGCT 59.272 38.462 0.00 0.00 42.86 3.79
310 316 6.993786 TTAAGATTGACGAATGCACCATAA 57.006 33.333 0.00 0.00 0.00 1.90
313 319 4.699735 AGATTGACGAATGCACCATAAACA 59.300 37.500 0.00 0.00 0.00 2.83
374 380 8.090831 GCTCTTATTGAAAGGAAATGGAAACTT 58.909 33.333 0.00 0.00 0.00 2.66
427 454 3.795688 AACGCTCATGGGGATATGAAT 57.204 42.857 0.00 0.00 36.69 2.57
431 458 5.819991 ACGCTCATGGGGATATGAATTTAT 58.180 37.500 0.00 0.00 36.69 1.40
451 478 8.731275 ATTTATGGTCGTTGATGTCAAATCTA 57.269 30.769 0.00 0.00 37.63 1.98
454 481 4.387559 TGGTCGTTGATGTCAAATCTAACG 59.612 41.667 0.00 0.00 41.35 3.18
455 482 4.624024 GGTCGTTGATGTCAAATCTAACGA 59.376 41.667 9.75 9.75 44.87 3.85
485 512 1.148310 CTCGACTGGACGTTTGCAAT 58.852 50.000 0.00 0.00 34.70 3.56
496 523 7.707035 ACTGGACGTTTGCAATATTTTACAAAA 59.293 29.630 0.00 0.00 31.55 2.44
497 524 7.842484 TGGACGTTTGCAATATTTTACAAAAC 58.158 30.769 0.00 0.00 31.55 2.43
516 543 8.791355 ACAAAACATTGACGTAGAATAAAACC 57.209 30.769 0.00 0.00 0.00 3.27
519 546 7.739498 AACATTGACGTAGAATAAAACCTGT 57.261 32.000 0.00 0.00 0.00 4.00
522 549 8.073768 ACATTGACGTAGAATAAAACCTGTTTG 58.926 33.333 0.00 0.00 32.36 2.93
523 550 7.556733 TTGACGTAGAATAAAACCTGTTTGT 57.443 32.000 0.00 0.00 32.36 2.83
524 551 7.181143 TGACGTAGAATAAAACCTGTTTGTC 57.819 36.000 0.00 0.00 32.36 3.18
564 593 3.798639 TTGCAAAACGCCGAGCACG 62.799 57.895 0.00 0.00 41.33 5.34
572 601 1.803922 CGCCGAGCACGACATAACA 60.804 57.895 4.70 0.00 42.66 2.41
579 608 4.270084 CCGAGCACGACATAACATTATTGT 59.730 41.667 4.70 0.00 42.66 2.71
598 627 2.303175 GTAAAGGCCCAACAACTCACA 58.697 47.619 0.00 0.00 0.00 3.58
602 631 3.237268 AGGCCCAACAACTCACATAAA 57.763 42.857 0.00 0.00 0.00 1.40
609 638 4.399303 CCAACAACTCACATAAAGGATCCC 59.601 45.833 8.55 0.00 0.00 3.85
613 642 5.222130 ACAACTCACATAAAGGATCCCACTT 60.222 40.000 8.55 2.19 0.00 3.16
618 647 5.014123 TCACATAAAGGATCCCACTTCTGTT 59.986 40.000 8.55 0.00 0.00 3.16
627 656 0.886490 CCACTTCTGTTTGCGGCTCT 60.886 55.000 0.00 0.00 0.00 4.09
637 666 2.309528 TTGCGGCTCTATCGAACAAT 57.690 45.000 0.00 0.00 0.00 2.71
638 667 1.570813 TGCGGCTCTATCGAACAATG 58.429 50.000 0.00 0.00 0.00 2.82
665 702 5.470098 TCAGGCTTTTAGAATTATCATCCGC 59.530 40.000 0.00 0.00 0.00 5.54
666 703 4.762251 AGGCTTTTAGAATTATCATCCGCC 59.238 41.667 0.00 0.00 0.00 6.13
667 704 4.082733 GGCTTTTAGAATTATCATCCGCCC 60.083 45.833 0.00 0.00 0.00 6.13
668 705 4.518970 GCTTTTAGAATTATCATCCGCCCA 59.481 41.667 0.00 0.00 0.00 5.36
669 706 5.562890 GCTTTTAGAATTATCATCCGCCCAC 60.563 44.000 0.00 0.00 0.00 4.61
690 727 0.030369 GGACACGTAGCCGGATAGTG 59.970 60.000 20.53 20.53 38.78 2.74
691 728 0.030369 GACACGTAGCCGGATAGTGG 59.970 60.000 23.73 11.06 38.78 4.00
692 729 1.362717 CACGTAGCCGGATAGTGGG 59.637 63.158 5.05 0.00 38.78 4.61
697 734 4.657952 GCCGGATAGTGGGCTTTT 57.342 55.556 5.05 0.00 45.93 2.27
698 735 3.792712 GCCGGATAGTGGGCTTTTA 57.207 52.632 5.05 0.00 45.93 1.52
699 736 1.594331 GCCGGATAGTGGGCTTTTAG 58.406 55.000 5.05 0.00 45.93 1.85
700 737 1.140252 GCCGGATAGTGGGCTTTTAGA 59.860 52.381 5.05 0.00 45.93 2.10
703 740 4.461198 CCGGATAGTGGGCTTTTAGAATT 58.539 43.478 0.00 0.00 0.00 2.17
704 741 5.617252 CCGGATAGTGGGCTTTTAGAATTA 58.383 41.667 0.00 0.00 0.00 1.40
705 742 6.238648 CCGGATAGTGGGCTTTTAGAATTAT 58.761 40.000 0.00 0.00 0.00 1.28
706 743 6.371825 CCGGATAGTGGGCTTTTAGAATTATC 59.628 42.308 0.00 0.00 0.00 1.75
707 744 6.934645 CGGATAGTGGGCTTTTAGAATTATCA 59.065 38.462 0.00 0.00 0.00 2.15
708 745 7.607991 CGGATAGTGGGCTTTTAGAATTATCAT 59.392 37.037 0.00 0.00 0.00 2.45
709 746 8.951243 GGATAGTGGGCTTTTAGAATTATCATC 58.049 37.037 0.00 0.00 0.00 2.92
710 747 6.867662 AGTGGGCTTTTAGAATTATCATCG 57.132 37.500 0.00 0.00 0.00 3.84
711 748 5.765182 AGTGGGCTTTTAGAATTATCATCGG 59.235 40.000 0.00 0.00 0.00 4.18
712 749 5.763204 GTGGGCTTTTAGAATTATCATCGGA 59.237 40.000 0.00 0.00 0.00 4.55
713 750 5.763204 TGGGCTTTTAGAATTATCATCGGAC 59.237 40.000 0.00 0.00 0.00 4.79
714 751 5.107065 GGGCTTTTAGAATTATCATCGGACG 60.107 44.000 0.00 0.00 0.00 4.79
715 752 5.107065 GGCTTTTAGAATTATCATCGGACGG 60.107 44.000 0.00 0.00 0.00 4.79
716 753 5.694910 GCTTTTAGAATTATCATCGGACGGA 59.305 40.000 0.00 0.00 0.00 4.69
717 754 6.346678 GCTTTTAGAATTATCATCGGACGGAC 60.347 42.308 0.00 0.00 0.00 4.79
718 755 5.777850 TTAGAATTATCATCGGACGGACA 57.222 39.130 0.00 0.00 0.00 4.02
719 756 4.244425 AGAATTATCATCGGACGGACAG 57.756 45.455 0.00 0.00 0.00 3.51
720 757 3.637229 AGAATTATCATCGGACGGACAGT 59.363 43.478 0.00 0.00 0.00 3.55
721 758 4.825634 AGAATTATCATCGGACGGACAGTA 59.174 41.667 0.00 0.00 0.00 2.74
722 759 5.477291 AGAATTATCATCGGACGGACAGTAT 59.523 40.000 0.00 0.00 0.00 2.12
723 760 4.761235 TTATCATCGGACGGACAGTATC 57.239 45.455 0.00 0.00 0.00 2.24
724 761 2.047002 TCATCGGACGGACAGTATCA 57.953 50.000 0.00 0.00 0.00 2.15
725 762 2.583143 TCATCGGACGGACAGTATCAT 58.417 47.619 0.00 0.00 0.00 2.45
726 763 2.293399 TCATCGGACGGACAGTATCATG 59.707 50.000 0.00 0.00 0.00 3.07
727 764 2.047002 TCGGACGGACAGTATCATGA 57.953 50.000 0.00 0.00 0.00 3.07
728 765 2.371306 TCGGACGGACAGTATCATGAA 58.629 47.619 0.00 0.00 0.00 2.57
729 766 2.098607 TCGGACGGACAGTATCATGAAC 59.901 50.000 0.00 0.00 0.00 3.18
730 767 2.460918 GGACGGACAGTATCATGAACG 58.539 52.381 0.00 0.00 0.00 3.95
731 768 2.098607 GGACGGACAGTATCATGAACGA 59.901 50.000 0.00 0.00 0.00 3.85
732 769 3.243434 GGACGGACAGTATCATGAACGAT 60.243 47.826 0.00 0.00 0.00 3.73
733 770 4.023450 GGACGGACAGTATCATGAACGATA 60.023 45.833 0.00 0.00 0.00 2.92
734 771 5.335740 GGACGGACAGTATCATGAACGATAT 60.336 44.000 0.00 0.00 30.79 1.63
735 772 5.461526 ACGGACAGTATCATGAACGATATG 58.538 41.667 0.00 0.00 30.79 1.78
736 773 5.240844 ACGGACAGTATCATGAACGATATGA 59.759 40.000 0.00 0.00 38.76 2.15
737 774 6.149633 CGGACAGTATCATGAACGATATGAA 58.850 40.000 0.00 0.00 38.01 2.57
738 775 6.640907 CGGACAGTATCATGAACGATATGAAA 59.359 38.462 0.00 0.00 38.01 2.69
770 807 5.226504 TCCATGGTGCCTAGGAGATATAT 57.773 43.478 14.75 0.00 0.00 0.86
771 808 6.355588 TCCATGGTGCCTAGGAGATATATA 57.644 41.667 14.75 0.00 0.00 0.86
773 810 7.196187 TCCATGGTGCCTAGGAGATATATAAA 58.804 38.462 14.75 0.00 0.00 1.40
774 811 7.682459 TCCATGGTGCCTAGGAGATATATAAAA 59.318 37.037 14.75 0.00 0.00 1.52
775 812 8.497745 CCATGGTGCCTAGGAGATATATAAAAT 58.502 37.037 14.75 0.00 0.00 1.82
776 813 9.911788 CATGGTGCCTAGGAGATATATAAAATT 57.088 33.333 14.75 0.00 0.00 1.82
950 987 1.587547 GATCAGAGGGGCAAATCGTC 58.412 55.000 0.00 0.00 0.00 4.20
978 1021 4.436242 AACATTCTGATTTCTGCTGCTG 57.564 40.909 0.00 0.00 0.00 4.41
979 1022 2.163815 ACATTCTGATTTCTGCTGCTGC 59.836 45.455 8.89 8.89 40.20 5.25
980 1023 2.195741 TTCTGATTTCTGCTGCTGCT 57.804 45.000 17.00 0.00 40.48 4.24
1075 1119 3.611025 AGAACCCAATCCAAACCTCAA 57.389 42.857 0.00 0.00 0.00 3.02
1084 1128 3.269538 TCCAAACCTCAACTTCGAACA 57.730 42.857 0.00 0.00 0.00 3.18
1085 1129 3.611970 TCCAAACCTCAACTTCGAACAA 58.388 40.909 0.00 0.00 0.00 2.83
1086 1130 4.011023 TCCAAACCTCAACTTCGAACAAA 58.989 39.130 0.00 0.00 0.00 2.83
1132 1176 4.981674 GGTTTCATTTTGCGTCAGATCAAA 59.018 37.500 0.00 0.00 0.00 2.69
1212 1256 2.301583 GCACCCTCTCCTAATCTGATCC 59.698 54.545 0.00 0.00 0.00 3.36
1225 1270 3.585990 GATCCCGCGGCCATTGTG 61.586 66.667 22.85 3.88 0.00 3.33
1236 1281 2.731217 GGCCATTGTGTATTCGATTGC 58.269 47.619 0.00 0.00 0.00 3.56
1255 1300 0.244994 CAGCAGTGAAGTAGAGCGGT 59.755 55.000 0.00 0.00 0.00 5.68
1271 1316 4.154347 GTGAGCAGCGAGGAGGGG 62.154 72.222 0.00 0.00 0.00 4.79
1684 1729 5.066634 GGATCACGAGAAGTATGTCAAGAGA 59.933 44.000 0.00 0.00 0.00 3.10
1693 1738 5.323371 AGTATGTCAAGAGAGAGCAAGAC 57.677 43.478 0.00 0.00 0.00 3.01
1723 1768 3.532155 GGCGAGGAGGCAGACGAT 61.532 66.667 0.00 0.00 45.92 3.73
1883 1929 8.341173 GTTGCTCCTTATCTGAAATATGTTCAG 58.659 37.037 15.72 15.72 45.38 3.02
2002 2051 8.602472 TTGTTCAAAATAATAAGGGCCAGTAT 57.398 30.769 6.18 0.00 0.00 2.12
2434 2560 0.832135 TCCTCCTCTGAGTTTGCCGT 60.832 55.000 3.66 0.00 36.86 5.68
2523 2652 2.740055 CTGCGCAGAGTTTCGGCT 60.740 61.111 33.66 0.00 35.41 5.52
2616 2747 2.905935 TTCTAGCCGCCGGAGCTACT 62.906 60.000 19.46 10.01 41.83 2.57
2806 2979 9.465199 TGATGATTTGTTTGAGATGATTTAGGA 57.535 29.630 0.00 0.00 0.00 2.94
2935 3153 2.124529 TGGAGCGGTTGTTGTGCA 60.125 55.556 0.00 0.00 0.00 4.57
2950 3168 0.890683 GTGCAGCTGCCCTGTTTTAT 59.109 50.000 34.64 0.00 43.71 1.40
3106 3352 5.293324 GTCGGTTCACTTTGTGCATATATCA 59.707 40.000 0.00 0.00 32.98 2.15
3121 3367 6.127563 TGCATATATCATTGCATTCATGGTCC 60.128 38.462 4.33 0.00 43.54 4.46
3168 3414 1.684734 GGCCGTCCTGACTAGGGAA 60.685 63.158 0.00 0.00 44.70 3.97
3188 3434 4.057428 AGGCAGACGTGTCCGCTC 62.057 66.667 8.02 0.00 37.70 5.03
3329 3575 2.110213 GACCCACTTGCACACCGA 59.890 61.111 0.00 0.00 0.00 4.69
3400 3646 6.978338 CAGCTATAGATGCAATGAATTTGGT 58.022 36.000 4.83 0.00 35.75 3.67
3454 3700 2.358322 AAACATCGGACCAAACCACT 57.642 45.000 0.00 0.00 0.00 4.00
3565 3843 9.371136 GATTAGAGTCTACACATGAATTGTTCA 57.629 33.333 0.00 0.00 45.01 3.18
3579 3857 6.193504 TGAATTGTTCATCCCATGTCCATTA 58.806 36.000 0.00 0.00 34.08 1.90
3767 4247 6.070538 AGCTGAGACACACTTTATCCAGTATT 60.071 38.462 0.00 0.00 0.00 1.89
3798 4278 6.531923 AGATGCATGCATGTTCTCTAATACT 58.468 36.000 36.73 19.28 36.70 2.12
3799 4279 6.649973 AGATGCATGCATGTTCTCTAATACTC 59.350 38.462 36.73 17.82 36.70 2.59
3800 4280 5.059161 TGCATGCATGTTCTCTAATACTCC 58.941 41.667 26.79 6.41 0.00 3.85
3801 4281 4.453819 GCATGCATGTTCTCTAATACTCCC 59.546 45.833 26.79 1.51 0.00 4.30
3802 4282 5.744300 GCATGCATGTTCTCTAATACTCCCT 60.744 44.000 26.79 0.00 0.00 4.20
3803 4283 5.537300 TGCATGTTCTCTAATACTCCCTC 57.463 43.478 0.00 0.00 0.00 4.30
3804 4284 4.345257 TGCATGTTCTCTAATACTCCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
3805 4285 4.559704 GCATGTTCTCTAATACTCCCTCCG 60.560 50.000 0.00 0.00 0.00 4.63
3806 4286 4.246712 TGTTCTCTAATACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
3807 4287 4.205587 TGTTCTCTAATACTCCCTCCGTC 58.794 47.826 0.00 0.00 0.00 4.79
3808 4288 3.505480 TCTCTAATACTCCCTCCGTCC 57.495 52.381 0.00 0.00 0.00 4.79
3809 4289 2.107901 TCTCTAATACTCCCTCCGTCCC 59.892 54.545 0.00 0.00 0.00 4.46
3810 4290 1.854939 TCTAATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
3811 4291 2.245546 TCTAATACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
3812 4292 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3813 4293 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3814 4294 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3815 4295 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3816 4296 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3817 4297 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3818 4298 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3819 4299 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3820 4300 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3821 4301 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3822 4302 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3823 4303 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3824 4304 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3825 4305 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3826 4306 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3827 4307 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3828 4308 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3829 4309 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3830 4310 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3831 4311 5.691754 CCCAAAATAAGTGACTCAACTTTGC 59.308 40.000 0.00 0.00 40.77 3.68
3832 4312 6.272318 CCAAAATAAGTGACTCAACTTTGCA 58.728 36.000 0.00 0.00 40.77 4.08
3833 4313 6.198966 CCAAAATAAGTGACTCAACTTTGCAC 59.801 38.462 0.00 0.00 40.77 4.57
3834 4314 6.699575 AAATAAGTGACTCAACTTTGCACT 57.300 33.333 0.00 0.00 40.77 4.40
3835 4315 7.801716 AAATAAGTGACTCAACTTTGCACTA 57.198 32.000 0.00 0.00 40.77 2.74
3836 4316 7.801716 AATAAGTGACTCAACTTTGCACTAA 57.198 32.000 0.00 0.00 40.77 2.24
3837 4317 7.801716 ATAAGTGACTCAACTTTGCACTAAA 57.198 32.000 0.00 0.00 40.77 1.85
3849 4329 6.738352 CTTTGCACTAAAGCTTGTACAAAG 57.262 37.500 19.95 19.95 39.55 2.77
3850 4330 5.828299 TTGCACTAAAGCTTGTACAAAGT 57.172 34.783 10.03 6.90 34.99 2.66
3851 4331 5.828299 TGCACTAAAGCTTGTACAAAGTT 57.172 34.783 10.03 6.54 34.99 2.66
3852 4332 5.577835 TGCACTAAAGCTTGTACAAAGTTG 58.422 37.500 10.03 6.21 34.99 3.16
3853 4333 5.355630 TGCACTAAAGCTTGTACAAAGTTGA 59.644 36.000 10.03 0.00 34.99 3.18
3854 4334 5.909610 GCACTAAAGCTTGTACAAAGTTGAG 59.090 40.000 10.03 10.35 0.00 3.02
3855 4335 6.458342 GCACTAAAGCTTGTACAAAGTTGAGT 60.458 38.462 10.03 10.94 0.00 3.41
3856 4336 7.126398 CACTAAAGCTTGTACAAAGTTGAGTC 58.874 38.462 10.03 0.00 0.00 3.36
3857 4337 6.821665 ACTAAAGCTTGTACAAAGTTGAGTCA 59.178 34.615 10.03 0.00 0.00 3.41
3858 4338 5.485662 AAGCTTGTACAAAGTTGAGTCAC 57.514 39.130 10.03 0.00 0.00 3.67
3859 4339 4.770795 AGCTTGTACAAAGTTGAGTCACT 58.229 39.130 10.03 0.00 0.00 3.41
3860 4340 5.186198 AGCTTGTACAAAGTTGAGTCACTT 58.814 37.500 10.03 0.00 38.74 3.16
3861 4341 6.346096 AGCTTGTACAAAGTTGAGTCACTTA 58.654 36.000 10.03 0.00 35.87 2.24
3862 4342 6.992715 AGCTTGTACAAAGTTGAGTCACTTAT 59.007 34.615 10.03 0.00 35.87 1.73
3863 4343 7.499232 AGCTTGTACAAAGTTGAGTCACTTATT 59.501 33.333 10.03 0.00 35.87 1.40
3864 4344 8.129211 GCTTGTACAAAGTTGAGTCACTTATTT 58.871 33.333 10.03 0.00 35.87 1.40
3866 4346 9.781834 TTGTACAAAGTTGAGTCACTTATTTTG 57.218 29.630 5.64 8.80 35.87 2.44
3867 4347 8.402472 TGTACAAAGTTGAGTCACTTATTTTGG 58.598 33.333 12.94 0.78 35.87 3.28
3868 4348 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
3869 4349 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
3870 4350 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3871 4351 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3872 4352 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3873 4353 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3874 4354 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3875 4355 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3876 4356 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
4386 4867 4.753610 TCTCATTTTGCTCTGTCTTGTCTG 59.246 41.667 0.00 0.00 0.00 3.51
4773 5260 4.742167 TGTTTGTCATATTTGTGTTTGCCG 59.258 37.500 0.00 0.00 0.00 5.69
4813 5300 4.532126 ACAAGAATCATACTGACCTCCACA 59.468 41.667 0.00 0.00 0.00 4.17
4922 5409 2.812011 AGAGCACGGTTATGTTTGTTCC 59.188 45.455 0.00 0.00 0.00 3.62
4926 5413 2.882137 CACGGTTATGTTTGTTCCCTGT 59.118 45.455 0.00 0.00 0.00 4.00
5081 5568 2.806945 TTACCATTGGCAGAAGGGAG 57.193 50.000 1.54 0.00 0.00 4.30
5107 5594 7.577979 CAAAACAAGCAATATGTGAGCATTTT 58.422 30.769 0.00 0.00 36.58 1.82
5130 5617 0.901827 ATACATGGACGACAGCACCA 59.098 50.000 0.00 0.00 38.09 4.17
5187 5685 5.591472 TGCCCATATCAAATGAAGAGAAGTG 59.409 40.000 0.00 0.00 0.00 3.16
5206 5704 2.604462 GTGAAGCAAAGCCACAAAACTG 59.396 45.455 0.00 0.00 0.00 3.16
5217 5715 3.183574 GCCACAAAACTGATAAAAACGGC 59.816 43.478 0.00 0.00 0.00 5.68
5223 5721 3.740044 ACTGATAAAAACGGCATCACG 57.260 42.857 0.00 0.00 40.31 4.35
5238 5736 5.587289 GGCATCACGGCTTCAATAATTTTA 58.413 37.500 0.00 0.00 37.17 1.52
5239 5737 5.458779 GGCATCACGGCTTCAATAATTTTAC 59.541 40.000 0.00 0.00 37.17 2.01
5275 5773 5.998363 GTCAATGGATTATTGTAGTCCCTCC 59.002 44.000 0.00 0.00 45.17 4.30
5305 5803 2.352503 AATTGCCGCAGCTTTTGTAG 57.647 45.000 0.00 0.00 40.80 2.74
5306 5804 1.247567 ATTGCCGCAGCTTTTGTAGT 58.752 45.000 0.00 0.00 40.80 2.73
5307 5805 1.885560 TTGCCGCAGCTTTTGTAGTA 58.114 45.000 0.00 0.00 40.80 1.82
5308 5806 1.153353 TGCCGCAGCTTTTGTAGTAC 58.847 50.000 0.00 0.00 40.80 2.73
5309 5807 1.270625 TGCCGCAGCTTTTGTAGTACT 60.271 47.619 0.00 0.00 40.80 2.73
5310 5808 1.393883 GCCGCAGCTTTTGTAGTACTC 59.606 52.381 0.00 0.00 35.50 2.59
5311 5809 2.000447 CCGCAGCTTTTGTAGTACTCC 59.000 52.381 0.00 0.00 0.00 3.85
5312 5810 2.000447 CGCAGCTTTTGTAGTACTCCC 59.000 52.381 0.00 0.00 0.00 4.30
5313 5811 2.353803 CGCAGCTTTTGTAGTACTCCCT 60.354 50.000 0.00 0.00 0.00 4.20
5314 5812 3.263261 GCAGCTTTTGTAGTACTCCCTC 58.737 50.000 0.00 0.00 0.00 4.30
5315 5813 3.055747 GCAGCTTTTGTAGTACTCCCTCT 60.056 47.826 0.00 0.00 0.00 3.69
5316 5814 4.499183 CAGCTTTTGTAGTACTCCCTCTG 58.501 47.826 0.00 0.00 0.00 3.35
5317 5815 4.021016 CAGCTTTTGTAGTACTCCCTCTGT 60.021 45.833 0.00 0.00 0.00 3.41
5318 5816 5.185249 CAGCTTTTGTAGTACTCCCTCTGTA 59.815 44.000 0.00 0.00 0.00 2.74
5319 5817 5.778750 AGCTTTTGTAGTACTCCCTCTGTAA 59.221 40.000 0.00 0.00 0.00 2.41
5320 5818 6.269307 AGCTTTTGTAGTACTCCCTCTGTAAA 59.731 38.462 0.00 0.00 0.00 2.01
5321 5819 6.368243 GCTTTTGTAGTACTCCCTCTGTAAAC 59.632 42.308 0.00 0.00 0.00 2.01
5322 5820 7.607615 TTTTGTAGTACTCCCTCTGTAAACT 57.392 36.000 0.00 0.00 0.00 2.66
5323 5821 8.710749 TTTTGTAGTACTCCCTCTGTAAACTA 57.289 34.615 0.00 0.00 0.00 2.24
5324 5822 8.710749 TTTGTAGTACTCCCTCTGTAAACTAA 57.289 34.615 0.00 0.00 0.00 2.24
5325 5823 8.890410 TTGTAGTACTCCCTCTGTAAACTAAT 57.110 34.615 0.00 0.00 0.00 1.73
5326 5824 9.979897 TTGTAGTACTCCCTCTGTAAACTAATA 57.020 33.333 0.00 0.00 0.00 0.98
5333 5831 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
5335 5833 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
5376 5874 9.490379 AAACGCTCTTATATTAGTTTATGGAGG 57.510 33.333 0.00 0.00 31.14 4.30
5377 5875 8.418597 ACGCTCTTATATTAGTTTATGGAGGA 57.581 34.615 0.00 0.00 0.00 3.71
5378 5876 8.867097 ACGCTCTTATATTAGTTTATGGAGGAA 58.133 33.333 0.00 0.00 0.00 3.36
5379 5877 9.360093 CGCTCTTATATTAGTTTATGGAGGAAG 57.640 37.037 0.00 0.00 0.00 3.46
5483 5982 7.891183 TGTATTTTTAGCATCCCCTGTTTCTAA 59.109 33.333 0.00 0.00 0.00 2.10
5544 6043 2.041966 CGACTATATTTCGACGCGCTT 58.958 47.619 5.73 0.00 38.85 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.381757 AGTAAGGTCTGCAATTGGTAAACA 58.618 37.500 7.72 0.00 0.00 2.83
3 4 5.959618 AGTAAGGTCTGCAATTGGTAAAC 57.040 39.130 7.72 0.00 0.00 2.01
6 7 8.644374 ATTAAAAGTAAGGTCTGCAATTGGTA 57.356 30.769 7.72 0.00 0.00 3.25
7 8 6.969993 TTAAAAGTAAGGTCTGCAATTGGT 57.030 33.333 7.72 0.00 0.00 3.67
31 32 5.260424 TCTTAATGCATTTTAGGTGGCAGA 58.740 37.500 18.75 3.15 39.95 4.26
126 128 9.439500 CCACAAATAGATGAACCAAAAATTGAT 57.561 29.630 0.00 0.00 0.00 2.57
127 129 8.428063 ACCACAAATAGATGAACCAAAAATTGA 58.572 29.630 0.00 0.00 0.00 2.57
128 130 8.606040 ACCACAAATAGATGAACCAAAAATTG 57.394 30.769 0.00 0.00 0.00 2.32
172 174 7.916977 AGCATATGCACTTGTTATGTGTTTATG 59.083 33.333 28.62 0.00 45.16 1.90
227 233 8.494433 AGGGATAGAATGTGTGTGTATACATTT 58.506 33.333 9.18 0.00 45.13 2.32
230 236 8.721133 ATAGGGATAGAATGTGTGTGTATACA 57.279 34.615 0.08 0.08 32.26 2.29
246 252 7.555087 CCTCTCAAAAGCATCTATAGGGATAG 58.445 42.308 0.00 0.00 37.04 2.08
262 268 5.869579 AGTTGTTAGATCTGCCTCTCAAAA 58.130 37.500 5.18 0.00 0.00 2.44
310 316 7.939039 TGGATGAGAGAAAGTGAGTTTAATGTT 59.061 33.333 0.00 0.00 0.00 2.71
313 319 8.324306 TCATGGATGAGAGAAAGTGAGTTTAAT 58.676 33.333 0.00 0.00 32.11 1.40
374 380 2.606108 CTGATGACACGGATCAAACGA 58.394 47.619 0.00 0.00 34.93 3.85
415 421 5.576563 ACGACCATAAATTCATATCCCCA 57.423 39.130 0.00 0.00 0.00 4.96
416 422 6.001460 TCAACGACCATAAATTCATATCCCC 58.999 40.000 0.00 0.00 0.00 4.81
427 454 8.447833 GTTAGATTTGACATCAACGACCATAAA 58.552 33.333 0.00 0.00 35.28 1.40
431 458 4.387559 CGTTAGATTTGACATCAACGACCA 59.612 41.667 9.20 0.00 40.74 4.02
451 478 2.231478 AGTCGAGTGTGATTGGATCGTT 59.769 45.455 0.00 0.00 35.05 3.85
454 481 2.166459 TCCAGTCGAGTGTGATTGGATC 59.834 50.000 18.64 0.00 46.23 3.36
455 482 2.179427 TCCAGTCGAGTGTGATTGGAT 58.821 47.619 18.64 0.00 46.23 3.41
496 523 7.739498 AACAGGTTTTATTCTACGTCAATGT 57.261 32.000 0.00 0.00 0.00 2.71
497 524 8.073768 ACAAACAGGTTTTATTCTACGTCAATG 58.926 33.333 0.00 0.00 0.00 2.82
515 542 0.958091 TTGCAATCCCGACAAACAGG 59.042 50.000 0.00 0.00 0.00 4.00
516 543 1.336440 TGTTGCAATCCCGACAAACAG 59.664 47.619 0.59 0.00 0.00 3.16
519 546 1.339610 CCTTGTTGCAATCCCGACAAA 59.660 47.619 0.59 0.00 38.33 2.83
522 549 1.212751 GCCTTGTTGCAATCCCGAC 59.787 57.895 0.59 0.00 0.00 4.79
523 550 0.960364 GAGCCTTGTTGCAATCCCGA 60.960 55.000 0.59 0.00 0.00 5.14
524 551 1.508088 GAGCCTTGTTGCAATCCCG 59.492 57.895 0.59 0.00 0.00 5.14
564 593 7.341445 TGGGCCTTTACAATAATGTTATGTC 57.659 36.000 4.53 0.00 41.05 3.06
572 601 5.777732 TGAGTTGTTGGGCCTTTACAATAAT 59.222 36.000 17.83 10.30 34.63 1.28
579 608 2.738587 TGTGAGTTGTTGGGCCTTTA 57.261 45.000 4.53 0.00 0.00 1.85
598 627 4.706962 GCAAACAGAAGTGGGATCCTTTAT 59.293 41.667 12.58 0.00 0.00 1.40
602 631 1.611673 CGCAAACAGAAGTGGGATCCT 60.612 52.381 12.58 0.00 0.00 3.24
609 638 1.795768 TAGAGCCGCAAACAGAAGTG 58.204 50.000 0.00 0.00 0.00 3.16
613 642 0.815095 TCGATAGAGCCGCAAACAGA 59.185 50.000 0.00 0.00 42.67 3.41
637 666 7.285401 GGATGATAATTCTAAAAGCCTGAACCA 59.715 37.037 0.00 0.00 0.00 3.67
638 667 7.520614 CGGATGATAATTCTAAAAGCCTGAACC 60.521 40.741 0.00 0.00 0.00 3.62
653 690 0.250727 CCGGTGGGCGGATGATAATT 60.251 55.000 0.00 0.00 0.00 1.40
665 702 4.446413 GGCTACGTGTCCGGTGGG 62.446 72.222 0.00 0.00 38.78 4.61
666 703 4.789075 CGGCTACGTGTCCGGTGG 62.789 72.222 18.74 0.00 41.82 4.61
690 727 5.107065 CGTCCGATGATAATTCTAAAAGCCC 60.107 44.000 0.00 0.00 0.00 5.19
691 728 5.107065 CCGTCCGATGATAATTCTAAAAGCC 60.107 44.000 0.00 0.00 0.00 4.35
692 729 5.694910 TCCGTCCGATGATAATTCTAAAAGC 59.305 40.000 0.00 0.00 0.00 3.51
693 730 6.700081 TGTCCGTCCGATGATAATTCTAAAAG 59.300 38.462 0.00 0.00 0.00 2.27
695 732 6.151663 TGTCCGTCCGATGATAATTCTAAA 57.848 37.500 0.00 0.00 0.00 1.85
696 733 5.301045 ACTGTCCGTCCGATGATAATTCTAA 59.699 40.000 0.00 0.00 0.00 2.10
697 734 4.825634 ACTGTCCGTCCGATGATAATTCTA 59.174 41.667 0.00 0.00 0.00 2.10
698 735 3.637229 ACTGTCCGTCCGATGATAATTCT 59.363 43.478 0.00 0.00 0.00 2.40
699 736 3.978687 ACTGTCCGTCCGATGATAATTC 58.021 45.455 0.00 0.00 0.00 2.17
700 737 5.243060 TGATACTGTCCGTCCGATGATAATT 59.757 40.000 0.00 0.00 0.00 1.40
703 740 3.746940 TGATACTGTCCGTCCGATGATA 58.253 45.455 0.00 0.00 0.00 2.15
704 741 2.583143 TGATACTGTCCGTCCGATGAT 58.417 47.619 0.00 0.00 0.00 2.45
705 742 2.047002 TGATACTGTCCGTCCGATGA 57.953 50.000 0.00 0.00 0.00 2.92
706 743 2.293399 TCATGATACTGTCCGTCCGATG 59.707 50.000 0.00 0.00 0.00 3.84
707 744 2.583143 TCATGATACTGTCCGTCCGAT 58.417 47.619 0.00 0.00 0.00 4.18
708 745 2.047002 TCATGATACTGTCCGTCCGA 57.953 50.000 0.00 0.00 0.00 4.55
709 746 2.460918 GTTCATGATACTGTCCGTCCG 58.539 52.381 0.00 0.00 0.00 4.79
710 747 2.098607 TCGTTCATGATACTGTCCGTCC 59.901 50.000 0.00 0.00 0.00 4.79
711 748 3.416119 TCGTTCATGATACTGTCCGTC 57.584 47.619 0.00 0.00 0.00 4.79
712 749 5.240844 TCATATCGTTCATGATACTGTCCGT 59.759 40.000 0.00 0.00 33.86 4.69
713 750 5.699839 TCATATCGTTCATGATACTGTCCG 58.300 41.667 0.00 0.00 33.86 4.79
714 751 7.095607 GGTTTCATATCGTTCATGATACTGTCC 60.096 40.741 0.00 0.00 35.75 4.02
715 752 7.095607 GGGTTTCATATCGTTCATGATACTGTC 60.096 40.741 0.00 0.00 35.75 3.51
716 753 6.706270 GGGTTTCATATCGTTCATGATACTGT 59.294 38.462 0.00 0.00 35.75 3.55
717 754 6.705825 TGGGTTTCATATCGTTCATGATACTG 59.294 38.462 0.00 0.00 35.75 2.74
718 755 6.706270 GTGGGTTTCATATCGTTCATGATACT 59.294 38.462 0.00 0.00 35.75 2.12
719 756 6.346598 CGTGGGTTTCATATCGTTCATGATAC 60.347 42.308 0.00 0.00 35.11 2.24
720 757 5.694458 CGTGGGTTTCATATCGTTCATGATA 59.306 40.000 0.00 0.00 35.43 2.15
721 758 4.511454 CGTGGGTTTCATATCGTTCATGAT 59.489 41.667 0.00 0.00 32.63 2.45
722 759 3.868661 CGTGGGTTTCATATCGTTCATGA 59.131 43.478 0.00 0.00 0.00 3.07
723 760 3.621268 ACGTGGGTTTCATATCGTTCATG 59.379 43.478 0.00 0.00 0.00 3.07
724 761 3.869065 ACGTGGGTTTCATATCGTTCAT 58.131 40.909 0.00 0.00 0.00 2.57
725 762 3.322211 ACGTGGGTTTCATATCGTTCA 57.678 42.857 0.00 0.00 0.00 3.18
726 763 5.050567 GGAATACGTGGGTTTCATATCGTTC 60.051 44.000 0.00 0.00 33.70 3.95
727 764 4.812626 GGAATACGTGGGTTTCATATCGTT 59.187 41.667 0.00 0.00 33.70 3.85
728 765 4.141892 TGGAATACGTGGGTTTCATATCGT 60.142 41.667 0.00 0.00 35.73 3.73
729 766 4.373527 TGGAATACGTGGGTTTCATATCG 58.626 43.478 0.00 0.00 0.00 2.92
730 767 6.241207 CATGGAATACGTGGGTTTCATATC 57.759 41.667 0.00 0.00 32.27 1.63
845 882 9.444600 GTCAGATTTCACATTAACTTACCCTAA 57.555 33.333 0.00 0.00 0.00 2.69
846 883 7.762615 CGTCAGATTTCACATTAACTTACCCTA 59.237 37.037 0.00 0.00 0.00 3.53
847 884 6.594159 CGTCAGATTTCACATTAACTTACCCT 59.406 38.462 0.00 0.00 0.00 4.34
848 885 6.183360 CCGTCAGATTTCACATTAACTTACCC 60.183 42.308 0.00 0.00 0.00 3.69
849 886 6.674760 GCCGTCAGATTTCACATTAACTTACC 60.675 42.308 0.00 0.00 0.00 2.85
850 887 6.248631 GCCGTCAGATTTCACATTAACTTAC 58.751 40.000 0.00 0.00 0.00 2.34
851 888 5.062934 CGCCGTCAGATTTCACATTAACTTA 59.937 40.000 0.00 0.00 0.00 2.24
852 889 4.142902 CGCCGTCAGATTTCACATTAACTT 60.143 41.667 0.00 0.00 0.00 2.66
853 890 3.370978 CGCCGTCAGATTTCACATTAACT 59.629 43.478 0.00 0.00 0.00 2.24
854 891 3.670203 CGCCGTCAGATTTCACATTAAC 58.330 45.455 0.00 0.00 0.00 2.01
855 892 2.095213 GCGCCGTCAGATTTCACATTAA 59.905 45.455 0.00 0.00 0.00 1.40
856 893 1.663643 GCGCCGTCAGATTTCACATTA 59.336 47.619 0.00 0.00 0.00 1.90
857 894 0.447801 GCGCCGTCAGATTTCACATT 59.552 50.000 0.00 0.00 0.00 2.71
950 987 4.790140 GCAGAAATCAGAATGTTACGCTTG 59.210 41.667 0.00 0.00 37.40 4.01
978 1021 3.082701 AGGAGGAGGAGCAGCAGC 61.083 66.667 0.00 0.00 42.56 5.25
979 1022 2.433994 GGAGGAGGAGGAGCAGCAG 61.434 68.421 0.00 0.00 0.00 4.24
980 1023 2.364842 GGAGGAGGAGGAGCAGCA 60.365 66.667 0.00 0.00 0.00 4.41
987 1030 3.151022 GGTGCGAGGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
1075 1119 5.130350 TCTCTTGGGATTTTTGTTCGAAGT 58.870 37.500 0.00 0.00 0.00 3.01
1084 1128 4.418395 TGGGGAATCTCTTGGGATTTTT 57.582 40.909 0.00 0.00 36.24 1.94
1085 1129 4.045846 TCTTGGGGAATCTCTTGGGATTTT 59.954 41.667 0.00 0.00 36.24 1.82
1086 1130 3.597868 TCTTGGGGAATCTCTTGGGATTT 59.402 43.478 0.00 0.00 36.24 2.17
1132 1176 1.623542 GGTAGTGGCGGATTCTGGGT 61.624 60.000 0.00 0.00 0.00 4.51
1155 1199 1.548269 GATCCGGATCATCTCACCTCC 59.452 57.143 34.65 7.55 37.74 4.30
1212 1256 1.355210 GAATACACAATGGCCGCGG 59.645 57.895 24.05 24.05 0.00 6.46
1225 1270 3.372206 ACTTCACTGCTGCAATCGAATAC 59.628 43.478 3.02 0.00 0.00 1.89
1236 1281 0.244994 ACCGCTCTACTTCACTGCTG 59.755 55.000 0.00 0.00 0.00 4.41
1684 1729 0.605589 CGGTCTCCTTGTCTTGCTCT 59.394 55.000 0.00 0.00 0.00 4.09
1693 1738 3.649277 CTCGCCACCGGTCTCCTTG 62.649 68.421 2.59 0.00 34.56 3.61
1723 1768 1.490490 GGGTGGATGTCAATCTGGCTA 59.510 52.381 0.00 0.00 32.95 3.93
2221 2346 9.177608 CCTATTTTACATCATGGAGAAAACTCA 57.822 33.333 0.00 0.00 0.00 3.41
2274 2399 4.634703 TTGCTCGAGCGGCCCAAA 62.635 61.111 30.75 16.46 45.83 3.28
2374 2500 3.885538 TTGCCGACCGAAATCGCCA 62.886 57.895 0.00 0.00 40.87 5.69
2406 2532 1.377463 CAGAGGAGGACGGACGAGT 60.377 63.158 0.00 0.00 0.00 4.18
2463 2589 3.227276 CACCTCCGGCGGCTATCT 61.227 66.667 23.83 0.00 0.00 1.98
2717 2848 2.126618 CTGCCTCGTTGACGCGTA 60.127 61.111 13.97 0.00 39.60 4.42
2753 2886 2.561733 TCGAAGATGGTAGTCAAGCG 57.438 50.000 0.00 0.00 0.00 4.68
2756 2889 8.421002 TCATCAATATTCGAAGATGGTAGTCAA 58.579 33.333 19.26 0.00 38.64 3.18
2905 3123 2.747446 ACCGCTCCACAATTTCATACAC 59.253 45.455 0.00 0.00 0.00 2.90
2935 3153 4.510167 AGTGATATAAAACAGGGCAGCT 57.490 40.909 0.00 0.00 0.00 4.24
2950 3168 6.267014 GGGTACTAGTGCTCCAATAAGTGATA 59.733 42.308 10.95 0.00 0.00 2.15
3106 3352 1.855295 TGCTGGACCATGAATGCAAT 58.145 45.000 3.01 0.00 0.00 3.56
3121 3367 3.991773 CACCCATCATTGTTCTTTTGCTG 59.008 43.478 0.00 0.00 0.00 4.41
3168 3414 4.363990 CGGACACGTCTGCCTGCT 62.364 66.667 0.00 0.00 34.81 4.24
3238 3484 8.833493 GTTCGCATACCCATAATTAAAACTAGT 58.167 33.333 0.00 0.00 0.00 2.57
3290 3536 2.028112 GTGTCAAGACTAGGGATGCACA 60.028 50.000 0.00 0.00 0.00 4.57
3329 3575 1.203313 TCCCTCAGCAAGACCCTAAGT 60.203 52.381 0.00 0.00 0.00 2.24
3417 3663 6.017687 CGATGTTTTCTCATCTTCATGGCATA 60.018 38.462 0.00 0.00 41.17 3.14
3443 3689 3.627577 CACCTATATGCAGTGGTTTGGTC 59.372 47.826 0.00 0.00 0.00 4.02
3454 3700 4.020573 CCGGGTAATTCTCACCTATATGCA 60.021 45.833 0.00 0.00 36.25 3.96
3565 3843 7.234166 GGAGAAAAATGATAATGGACATGGGAT 59.766 37.037 0.00 0.00 0.00 3.85
3579 3857 9.466497 AGTTACATACACATGGAGAAAAATGAT 57.534 29.630 0.00 0.00 36.39 2.45
3737 4217 5.645497 GGATAAAGTGTGTCTCAGCTTCAAT 59.355 40.000 0.00 0.00 0.00 2.57
3767 4247 4.945543 AGAACATGCATGCATCTTACAAGA 59.054 37.500 30.07 0.00 39.78 3.02
3798 4278 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3799 4279 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3800 4280 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3801 4281 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3802 4282 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3803 4283 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3804 4284 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3805 4285 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3806 4286 6.460953 GCAAAGTTGAGTCACTTATTTTGGGA 60.461 38.462 11.16 0.00 35.87 4.37
3807 4287 5.691754 GCAAAGTTGAGTCACTTATTTTGGG 59.308 40.000 11.16 0.00 35.87 4.12
3808 4288 6.198966 GTGCAAAGTTGAGTCACTTATTTTGG 59.801 38.462 11.16 0.00 35.87 3.28
3809 4289 6.974622 AGTGCAAAGTTGAGTCACTTATTTTG 59.025 34.615 0.00 0.00 35.87 2.44
3810 4290 7.100458 AGTGCAAAGTTGAGTCACTTATTTT 57.900 32.000 0.00 0.00 35.87 1.82
3811 4291 6.699575 AGTGCAAAGTTGAGTCACTTATTT 57.300 33.333 0.00 0.00 35.87 1.40
3812 4292 7.801716 TTAGTGCAAAGTTGAGTCACTTATT 57.198 32.000 7.72 0.00 35.87 1.40
3813 4293 7.520614 GCTTTAGTGCAAAGTTGAGTCACTTAT 60.521 37.037 7.72 0.00 44.73 1.73
3814 4294 6.238374 GCTTTAGTGCAAAGTTGAGTCACTTA 60.238 38.462 7.72 0.00 44.73 2.24
3815 4295 5.449177 GCTTTAGTGCAAAGTTGAGTCACTT 60.449 40.000 7.72 0.00 44.73 3.16
3816 4296 4.035675 GCTTTAGTGCAAAGTTGAGTCACT 59.964 41.667 0.00 7.60 44.73 3.41
3817 4297 4.035675 AGCTTTAGTGCAAAGTTGAGTCAC 59.964 41.667 0.00 0.00 44.73 3.67
3818 4298 4.199310 AGCTTTAGTGCAAAGTTGAGTCA 58.801 39.130 0.00 0.00 44.73 3.41
3819 4299 4.820284 AGCTTTAGTGCAAAGTTGAGTC 57.180 40.909 0.00 0.00 44.73 3.36
3820 4300 4.399303 ACAAGCTTTAGTGCAAAGTTGAGT 59.601 37.500 0.00 3.87 44.73 3.41
3821 4301 4.925068 ACAAGCTTTAGTGCAAAGTTGAG 58.075 39.130 0.00 3.42 44.73 3.02
3822 4302 4.981806 ACAAGCTTTAGTGCAAAGTTGA 57.018 36.364 0.00 0.00 44.73 3.18
3823 4303 5.577835 TGTACAAGCTTTAGTGCAAAGTTG 58.422 37.500 0.00 0.00 44.73 3.16
3824 4304 5.828299 TGTACAAGCTTTAGTGCAAAGTT 57.172 34.783 0.00 0.00 44.73 2.66
3825 4305 5.828299 TTGTACAAGCTTTAGTGCAAAGT 57.172 34.783 15.03 2.52 44.73 2.66
3827 4307 6.202516 ACTTTGTACAAGCTTTAGTGCAAA 57.797 33.333 22.67 22.67 44.24 3.68
3828 4308 5.828299 ACTTTGTACAAGCTTTAGTGCAA 57.172 34.783 13.88 13.88 38.31 4.08
3829 4309 5.355630 TCAACTTTGTACAAGCTTTAGTGCA 59.644 36.000 8.56 0.00 34.99 4.57
3830 4310 5.816919 TCAACTTTGTACAAGCTTTAGTGC 58.183 37.500 8.56 0.00 0.00 4.40
3831 4311 7.016361 ACTCAACTTTGTACAAGCTTTAGTG 57.984 36.000 8.56 4.89 0.00 2.74
3832 4312 6.821665 TGACTCAACTTTGTACAAGCTTTAGT 59.178 34.615 8.56 10.77 0.00 2.24
3833 4313 7.011482 AGTGACTCAACTTTGTACAAGCTTTAG 59.989 37.037 8.56 5.59 0.00 1.85
3834 4314 6.821665 AGTGACTCAACTTTGTACAAGCTTTA 59.178 34.615 8.56 0.00 0.00 1.85
3835 4315 5.648092 AGTGACTCAACTTTGTACAAGCTTT 59.352 36.000 8.56 0.84 0.00 3.51
3836 4316 5.186198 AGTGACTCAACTTTGTACAAGCTT 58.814 37.500 8.56 0.00 0.00 3.74
3837 4317 4.770795 AGTGACTCAACTTTGTACAAGCT 58.229 39.130 8.56 0.00 0.00 3.74
3838 4318 5.485662 AAGTGACTCAACTTTGTACAAGC 57.514 39.130 8.56 0.00 37.05 4.01
3840 4320 9.781834 CAAAATAAGTGACTCAACTTTGTACAA 57.218 29.630 3.59 3.59 40.77 2.41
3841 4321 8.402472 CCAAAATAAGTGACTCAACTTTGTACA 58.598 33.333 0.00 0.00 40.77 2.90
3842 4322 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3843 4323 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3844 4324 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3845 4325 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3846 4326 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3847 4327 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3848 4328 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3849 4329 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3850 4330 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3851 4331 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3852 4332 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3853 4333 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3854 4334 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3855 4335 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3856 4336 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3857 4337 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3858 4338 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3859 4339 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3860 4340 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3861 4341 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3862 4342 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3863 4343 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3864 4344 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3865 4345 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
3866 4346 0.535797 CAAACTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
3867 4347 1.204231 GACAAACTACTCCCTCCGTCC 59.796 57.143 0.00 0.00 0.00 4.79
3868 4348 2.169330 AGACAAACTACTCCCTCCGTC 58.831 52.381 0.00 0.00 0.00 4.79
3869 4349 2.305858 AGACAAACTACTCCCTCCGT 57.694 50.000 0.00 0.00 0.00 4.69
3870 4350 3.679824 AAAGACAAACTACTCCCTCCG 57.320 47.619 0.00 0.00 0.00 4.63
3871 4351 8.075761 TCTTATAAAGACAAACTACTCCCTCC 57.924 38.462 0.00 0.00 31.20 4.30
3872 4352 8.198778 CCTCTTATAAAGACAAACTACTCCCTC 58.801 40.741 0.00 0.00 33.12 4.30
3873 4353 7.679025 ACCTCTTATAAAGACAAACTACTCCCT 59.321 37.037 0.00 0.00 33.12 4.20
3874 4354 7.849160 ACCTCTTATAAAGACAAACTACTCCC 58.151 38.462 0.00 0.00 33.12 4.30
3956 4436 8.548025 TCATCAAAAGGTCAGGAACAGATATAA 58.452 33.333 0.00 0.00 0.00 0.98
4386 4867 0.912486 AGGAGATGTGTAAGCCACCC 59.088 55.000 0.00 0.00 43.85 4.61
4456 4938 1.670791 TTGTTTGTCCCAGTTCGGTC 58.329 50.000 0.00 0.00 0.00 4.79
4813 5300 7.331026 TCGAATCTTTCAGGACAGAAATACAT 58.669 34.615 0.00 0.00 36.94 2.29
4922 5409 4.082665 ACCATTATCAGATCAGCACAGG 57.917 45.455 0.00 0.00 0.00 4.00
4926 5413 7.938490 TGCTATAAAACCATTATCAGATCAGCA 59.062 33.333 0.00 0.00 0.00 4.41
5070 5557 1.000171 CTTGTTTTGCTCCCTTCTGCC 60.000 52.381 0.00 0.00 0.00 4.85
5081 5568 3.989167 TGCTCACATATTGCTTGTTTTGC 59.011 39.130 0.00 0.00 0.00 3.68
5187 5685 3.163630 TCAGTTTTGTGGCTTTGCTTC 57.836 42.857 0.00 0.00 0.00 3.86
5206 5704 1.400494 AGCCGTGATGCCGTTTTTATC 59.600 47.619 0.00 0.00 0.00 1.75
5217 5715 8.586273 CAAAGTAAAATTATTGAAGCCGTGATG 58.414 33.333 0.00 0.00 0.00 3.07
5262 5760 2.587060 TGGATGGGAGGGACTACAAT 57.413 50.000 0.00 0.00 44.82 2.71
5275 5773 3.674138 GCTGCGGCAATTAATATGGATGG 60.674 47.826 14.08 0.00 38.54 3.51
5307 5805 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
5309 5807 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
5350 5848 9.490379 CCTCCATAAACTAATATAAGAGCGTTT 57.510 33.333 0.00 0.00 0.00 3.60
5351 5849 8.867097 TCCTCCATAAACTAATATAAGAGCGTT 58.133 33.333 0.00 0.00 0.00 4.84
5352 5850 8.418597 TCCTCCATAAACTAATATAAGAGCGT 57.581 34.615 0.00 0.00 0.00 5.07
5353 5851 9.360093 CTTCCTCCATAAACTAATATAAGAGCG 57.640 37.037 0.00 0.00 0.00 5.03
5369 5867 9.442062 TCCATATAAAGTTGTACTTCCTCCATA 57.558 33.333 0.00 0.00 37.47 2.74
5370 5868 8.331931 TCCATATAAAGTTGTACTTCCTCCAT 57.668 34.615 0.00 0.00 37.47 3.41
5371 5869 7.743116 TCCATATAAAGTTGTACTTCCTCCA 57.257 36.000 0.00 0.00 37.47 3.86
5372 5870 8.429641 TGATCCATATAAAGTTGTACTTCCTCC 58.570 37.037 0.00 0.00 37.47 4.30
5373 5871 9.482627 CTGATCCATATAAAGTTGTACTTCCTC 57.517 37.037 0.00 0.00 37.47 3.71
5374 5872 9.213777 TCTGATCCATATAAAGTTGTACTTCCT 57.786 33.333 0.00 0.00 37.47 3.36
5375 5873 9.482627 CTCTGATCCATATAAAGTTGTACTTCC 57.517 37.037 0.00 0.00 37.47 3.46
5376 5874 9.482627 CCTCTGATCCATATAAAGTTGTACTTC 57.517 37.037 0.00 0.00 37.47 3.01
5377 5875 9.213777 TCCTCTGATCCATATAAAGTTGTACTT 57.786 33.333 0.00 0.00 40.80 2.24
5378 5876 8.783660 TCCTCTGATCCATATAAAGTTGTACT 57.216 34.615 0.00 0.00 0.00 2.73
5379 5877 9.482627 CTTCCTCTGATCCATATAAAGTTGTAC 57.517 37.037 0.00 0.00 0.00 2.90
5380 5878 9.213777 ACTTCCTCTGATCCATATAAAGTTGTA 57.786 33.333 0.00 0.00 0.00 2.41
5381 5879 8.095452 ACTTCCTCTGATCCATATAAAGTTGT 57.905 34.615 0.00 0.00 0.00 3.32
5483 5982 0.838122 ACAGAAGCCAGCCTGTAGGT 60.838 55.000 0.00 0.00 41.38 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.