Multiple sequence alignment - TraesCS1A01G151700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G151700 chr1A 100.000 2336 0 0 1 2336 260842039 260839704 0.000000e+00 4314
1 TraesCS1A01G151700 chr1A 94.144 666 38 1 1 665 253313950 253313285 0.000000e+00 1013
2 TraesCS1A01G151700 chr2A 96.536 664 21 1 1 662 74854799 74855462 0.000000e+00 1098
3 TraesCS1A01G151700 chr3D 95.338 665 31 0 1 665 274353102 274352438 0.000000e+00 1057
4 TraesCS1A01G151700 chr4D 95.188 665 32 0 1 665 463910802 463910138 0.000000e+00 1051
5 TraesCS1A01G151700 chr4D 95.188 665 31 1 1 665 126638484 126637821 0.000000e+00 1050
6 TraesCS1A01G151700 chr4A 96.378 635 22 1 1 634 438390784 438390150 0.000000e+00 1044
7 TraesCS1A01G151700 chr4A 98.932 281 3 0 1689 1969 572648974 572648694 9.640000e-139 503
8 TraesCS1A01G151700 chr7D 94.586 665 36 0 1 665 40444925 40445589 0.000000e+00 1029
9 TraesCS1A01G151700 chr5A 94.444 666 36 1 1 665 343043554 343044219 0.000000e+00 1024
10 TraesCS1A01G151700 chr5A 99.286 280 2 0 1691 1970 34705556 34705277 7.450000e-140 507
11 TraesCS1A01G151700 chr6B 93.844 666 39 2 1 665 158906005 158905341 0.000000e+00 1002
12 TraesCS1A01G151700 chr1B 86.776 794 55 21 911 1688 300335724 300334965 0.000000e+00 839
13 TraesCS1A01G151700 chr1B 95.442 373 15 1 1966 2336 300334876 300334504 5.560000e-166 593
14 TraesCS1A01G151700 chr1B 99.283 279 2 0 1691 1969 615614870 615614592 2.680000e-139 505
15 TraesCS1A01G151700 chr1D 95.257 506 23 1 983 1487 204484635 204484130 0.000000e+00 800
16 TraesCS1A01G151700 chr1D 90.769 325 24 2 2018 2336 204483917 204483593 1.660000e-116 429
17 TraesCS1A01G151700 chr3B 98.951 286 2 1 1689 1973 663556422 663556707 5.760000e-141 510
18 TraesCS1A01G151700 chr3B 99.286 280 2 0 1690 1969 747709170 747709449 7.450000e-140 507
19 TraesCS1A01G151700 chr3B 98.596 285 4 0 1691 1975 635025492 635025208 2.680000e-139 505
20 TraesCS1A01G151700 chr5B 99.288 281 2 0 1690 1970 18130276 18130556 2.070000e-140 508
21 TraesCS1A01G151700 chr2B 98.596 285 3 1 1686 1969 86540873 86540589 9.640000e-139 503
22 TraesCS1A01G151700 chr7A 98.252 286 5 0 1685 1970 164783677 164783392 3.470000e-138 501


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G151700 chr1A 260839704 260842039 2335 True 4314.0 4314 100.000 1 2336 1 chr1A.!!$R2 2335
1 TraesCS1A01G151700 chr1A 253313285 253313950 665 True 1013.0 1013 94.144 1 665 1 chr1A.!!$R1 664
2 TraesCS1A01G151700 chr2A 74854799 74855462 663 False 1098.0 1098 96.536 1 662 1 chr2A.!!$F1 661
3 TraesCS1A01G151700 chr3D 274352438 274353102 664 True 1057.0 1057 95.338 1 665 1 chr3D.!!$R1 664
4 TraesCS1A01G151700 chr4D 463910138 463910802 664 True 1051.0 1051 95.188 1 665 1 chr4D.!!$R2 664
5 TraesCS1A01G151700 chr4D 126637821 126638484 663 True 1050.0 1050 95.188 1 665 1 chr4D.!!$R1 664
6 TraesCS1A01G151700 chr4A 438390150 438390784 634 True 1044.0 1044 96.378 1 634 1 chr4A.!!$R1 633
7 TraesCS1A01G151700 chr7D 40444925 40445589 664 False 1029.0 1029 94.586 1 665 1 chr7D.!!$F1 664
8 TraesCS1A01G151700 chr5A 343043554 343044219 665 False 1024.0 1024 94.444 1 665 1 chr5A.!!$F1 664
9 TraesCS1A01G151700 chr6B 158905341 158906005 664 True 1002.0 1002 93.844 1 665 1 chr6B.!!$R1 664
10 TraesCS1A01G151700 chr1B 300334504 300335724 1220 True 716.0 839 91.109 911 2336 2 chr1B.!!$R2 1425
11 TraesCS1A01G151700 chr1D 204483593 204484635 1042 True 614.5 800 93.013 983 2336 2 chr1D.!!$R1 1353

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 957 0.249868 CAGAACGGCTTCCTGTCACA 60.25 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 1985 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 3.810310 ATTTTGACTTTTGCCGGACAA 57.190 38.095 5.05 6.40 36.13 3.18
330 332 5.428253 GGCCACATAGTTTGTCTAATCAGA 58.572 41.667 0.00 0.00 36.00 3.27
492 496 2.371841 TCCACTCGCCAAATATAGCCAT 59.628 45.455 0.00 0.00 0.00 4.40
543 547 1.999648 TTGCCAGGTGAAAGAAGCAT 58.000 45.000 0.00 0.00 0.00 3.79
548 552 3.349927 CCAGGTGAAAGAAGCATCATGA 58.650 45.455 0.00 0.00 0.00 3.07
606 610 5.278061 AGTACTTGGCCCTTAGAATAGTGA 58.722 41.667 0.00 0.00 0.00 3.41
683 687 2.596904 GCACGAGCTATCCACCTTAA 57.403 50.000 0.00 0.00 37.91 1.85
684 688 2.901249 GCACGAGCTATCCACCTTAAA 58.099 47.619 0.00 0.00 37.91 1.52
685 689 3.467803 GCACGAGCTATCCACCTTAAAT 58.532 45.455 0.00 0.00 37.91 1.40
686 690 3.877508 GCACGAGCTATCCACCTTAAATT 59.122 43.478 0.00 0.00 37.91 1.82
687 691 4.335594 GCACGAGCTATCCACCTTAAATTT 59.664 41.667 0.00 0.00 37.91 1.82
688 692 5.730568 GCACGAGCTATCCACCTTAAATTTG 60.731 44.000 0.00 0.00 37.91 2.32
689 693 4.881850 ACGAGCTATCCACCTTAAATTTGG 59.118 41.667 0.00 0.00 0.00 3.28
690 694 4.881850 CGAGCTATCCACCTTAAATTTGGT 59.118 41.667 0.00 0.00 36.96 3.67
708 712 8.587952 AATTTGGTGTTATAAGACAAAGCAAC 57.412 30.769 14.11 0.00 34.91 4.17
709 713 6.701145 TTGGTGTTATAAGACAAAGCAACA 57.299 33.333 14.11 0.00 0.00 3.33
710 714 6.892658 TGGTGTTATAAGACAAAGCAACAT 57.107 33.333 14.11 0.00 0.00 2.71
711 715 7.283625 TGGTGTTATAAGACAAAGCAACATT 57.716 32.000 14.11 0.00 0.00 2.71
712 716 8.397575 TGGTGTTATAAGACAAAGCAACATTA 57.602 30.769 14.11 0.00 0.00 1.90
713 717 8.851145 TGGTGTTATAAGACAAAGCAACATTAA 58.149 29.630 14.11 0.00 0.00 1.40
714 718 9.124807 GGTGTTATAAGACAAAGCAACATTAAC 57.875 33.333 14.11 0.00 0.00 2.01
715 719 9.672086 GTGTTATAAGACAAAGCAACATTAACA 57.328 29.630 7.83 0.00 0.00 2.41
716 720 9.672086 TGTTATAAGACAAAGCAACATTAACAC 57.328 29.630 0.00 0.00 0.00 3.32
717 721 9.893305 GTTATAAGACAAAGCAACATTAACACT 57.107 29.630 0.00 0.00 0.00 3.55
722 726 8.165239 AGACAAAGCAACATTAACACTATTCA 57.835 30.769 0.00 0.00 0.00 2.57
723 727 8.076178 AGACAAAGCAACATTAACACTATTCAC 58.924 33.333 0.00 0.00 0.00 3.18
724 728 7.711846 ACAAAGCAACATTAACACTATTCACA 58.288 30.769 0.00 0.00 0.00 3.58
725 729 8.359642 ACAAAGCAACATTAACACTATTCACAT 58.640 29.630 0.00 0.00 0.00 3.21
726 730 9.195411 CAAAGCAACATTAACACTATTCACATT 57.805 29.630 0.00 0.00 0.00 2.71
727 731 9.762933 AAAGCAACATTAACACTATTCACATTT 57.237 25.926 0.00 0.00 0.00 2.32
728 732 8.746922 AGCAACATTAACACTATTCACATTTG 57.253 30.769 0.00 0.00 0.00 2.32
729 733 7.814107 AGCAACATTAACACTATTCACATTTGG 59.186 33.333 0.00 0.00 0.00 3.28
730 734 7.812191 GCAACATTAACACTATTCACATTTGGA 59.188 33.333 0.00 0.00 0.00 3.53
731 735 9.859427 CAACATTAACACTATTCACATTTGGAT 57.141 29.630 0.00 0.00 0.00 3.41
733 737 9.859427 ACATTAACACTATTCACATTTGGATTG 57.141 29.630 0.00 0.00 0.00 2.67
734 738 9.859427 CATTAACACTATTCACATTTGGATTGT 57.141 29.630 0.00 0.00 27.54 2.71
738 742 9.612066 AACACTATTCACATTTGGATTGTTTTT 57.388 25.926 0.00 0.00 25.15 1.94
767 771 7.712264 TTCTCAATGTGCATTTTAAGTTTGG 57.288 32.000 0.00 0.00 0.00 3.28
768 772 7.048629 TCTCAATGTGCATTTTAAGTTTGGA 57.951 32.000 0.00 0.00 0.00 3.53
769 773 6.922957 TCTCAATGTGCATTTTAAGTTTGGAC 59.077 34.615 0.00 0.00 32.96 4.02
770 774 6.815089 TCAATGTGCATTTTAAGTTTGGACT 58.185 32.000 0.00 0.00 37.87 3.85
772 776 7.224362 TCAATGTGCATTTTAAGTTTGGACTTG 59.776 33.333 0.00 8.41 45.46 3.16
773 777 6.214191 TGTGCATTTTAAGTTTGGACTTGA 57.786 33.333 0.00 0.00 45.46 3.02
774 778 6.634805 TGTGCATTTTAAGTTTGGACTTGAA 58.365 32.000 0.00 0.00 45.46 2.69
786 790 7.210174 AGTTTGGACTTGAAATTTTTAGAGGC 58.790 34.615 7.30 0.00 29.87 4.70
787 791 6.976934 TTGGACTTGAAATTTTTAGAGGCT 57.023 33.333 7.30 0.00 0.00 4.58
788 792 6.331369 TGGACTTGAAATTTTTAGAGGCTG 57.669 37.500 0.00 0.00 0.00 4.85
789 793 5.833131 TGGACTTGAAATTTTTAGAGGCTGT 59.167 36.000 0.00 0.00 0.00 4.40
790 794 7.001674 TGGACTTGAAATTTTTAGAGGCTGTA 58.998 34.615 0.00 0.00 0.00 2.74
791 795 7.040686 TGGACTTGAAATTTTTAGAGGCTGTAC 60.041 37.037 0.00 0.00 0.00 2.90
792 796 7.175119 GGACTTGAAATTTTTAGAGGCTGTACT 59.825 37.037 0.00 0.00 0.00 2.73
793 797 8.100508 ACTTGAAATTTTTAGAGGCTGTACTC 57.899 34.615 0.00 0.00 37.77 2.59
794 798 7.719633 ACTTGAAATTTTTAGAGGCTGTACTCA 59.280 33.333 0.00 0.00 39.97 3.41
795 799 7.435068 TGAAATTTTTAGAGGCTGTACTCAC 57.565 36.000 0.00 0.00 39.97 3.51
796 800 6.995686 TGAAATTTTTAGAGGCTGTACTCACA 59.004 34.615 0.00 0.00 39.97 3.58
797 801 7.665559 TGAAATTTTTAGAGGCTGTACTCACAT 59.334 33.333 0.00 0.00 39.97 3.21
798 802 8.409358 AAATTTTTAGAGGCTGTACTCACATT 57.591 30.769 0.00 0.00 39.97 2.71
799 803 7.617041 ATTTTTAGAGGCTGTACTCACATTC 57.383 36.000 0.00 0.00 39.97 2.67
800 804 4.737855 TTAGAGGCTGTACTCACATTCC 57.262 45.455 0.00 0.00 39.97 3.01
801 805 2.826488 AGAGGCTGTACTCACATTCCT 58.174 47.619 0.00 0.00 39.11 3.36
802 806 3.177228 AGAGGCTGTACTCACATTCCTT 58.823 45.455 0.00 0.00 37.54 3.36
803 807 4.353777 AGAGGCTGTACTCACATTCCTTA 58.646 43.478 0.00 0.00 37.54 2.69
804 808 4.965532 AGAGGCTGTACTCACATTCCTTAT 59.034 41.667 0.00 0.00 37.54 1.73
805 809 5.028549 AGGCTGTACTCACATTCCTTATG 57.971 43.478 0.00 0.00 35.28 1.90
806 810 4.716784 AGGCTGTACTCACATTCCTTATGA 59.283 41.667 0.00 0.00 35.28 2.15
807 811 5.189736 AGGCTGTACTCACATTCCTTATGAA 59.810 40.000 0.00 0.00 35.28 2.57
808 812 5.294552 GGCTGTACTCACATTCCTTATGAAC 59.705 44.000 0.00 0.00 37.69 3.18
809 813 5.874810 GCTGTACTCACATTCCTTATGAACA 59.125 40.000 0.00 0.00 37.69 3.18
810 814 6.540189 GCTGTACTCACATTCCTTATGAACAT 59.460 38.462 0.00 0.00 37.69 2.71
811 815 7.254590 GCTGTACTCACATTCCTTATGAACATC 60.255 40.741 0.00 0.00 37.69 3.06
812 816 7.619965 TGTACTCACATTCCTTATGAACATCA 58.380 34.615 0.00 0.00 37.69 3.07
813 817 7.765819 TGTACTCACATTCCTTATGAACATCAG 59.234 37.037 0.00 0.00 37.69 2.90
814 818 6.950842 ACTCACATTCCTTATGAACATCAGA 58.049 36.000 0.00 0.00 37.69 3.27
815 819 7.571919 ACTCACATTCCTTATGAACATCAGAT 58.428 34.615 0.00 0.00 37.69 2.90
816 820 8.051535 ACTCACATTCCTTATGAACATCAGATT 58.948 33.333 0.00 0.00 37.69 2.40
817 821 8.812513 TCACATTCCTTATGAACATCAGATTT 57.187 30.769 0.00 0.00 37.69 2.17
818 822 9.246670 TCACATTCCTTATGAACATCAGATTTT 57.753 29.630 0.00 0.00 37.69 1.82
819 823 9.865321 CACATTCCTTATGAACATCAGATTTTT 57.135 29.630 0.00 0.00 37.69 1.94
842 846 7.707774 TTTTTCCGGAATTTCTTGAAACATC 57.292 32.000 19.62 1.08 0.00 3.06
843 847 6.648879 TTTCCGGAATTTCTTGAAACATCT 57.351 33.333 19.62 0.00 0.00 2.90
844 848 7.753309 TTTCCGGAATTTCTTGAAACATCTA 57.247 32.000 19.62 0.00 0.00 1.98
845 849 7.753309 TTCCGGAATTTCTTGAAACATCTAA 57.247 32.000 14.35 0.00 0.00 2.10
846 850 7.753309 TCCGGAATTTCTTGAAACATCTAAA 57.247 32.000 0.00 0.00 0.00 1.85
847 851 8.172352 TCCGGAATTTCTTGAAACATCTAAAA 57.828 30.769 0.00 0.00 0.00 1.52
848 852 8.296713 TCCGGAATTTCTTGAAACATCTAAAAG 58.703 33.333 0.00 0.00 0.00 2.27
849 853 8.082242 CCGGAATTTCTTGAAACATCTAAAAGT 58.918 33.333 0.00 0.00 0.00 2.66
850 854 8.905702 CGGAATTTCTTGAAACATCTAAAAGTG 58.094 33.333 0.00 0.00 0.00 3.16
851 855 9.750125 GGAATTTCTTGAAACATCTAAAAGTGT 57.250 29.630 0.00 0.00 0.00 3.55
857 861 9.921637 TCTTGAAACATCTAAAAGTGTTTTTGT 57.078 25.926 5.14 0.00 45.59 2.83
858 862 9.956797 CTTGAAACATCTAAAAGTGTTTTTGTG 57.043 29.630 5.14 0.00 45.59 3.33
859 863 9.698309 TTGAAACATCTAAAAGTGTTTTTGTGA 57.302 25.926 5.14 0.00 45.59 3.58
860 864 9.134734 TGAAACATCTAAAAGTGTTTTTGTGAC 57.865 29.630 5.14 0.00 45.59 3.67
861 865 9.134734 GAAACATCTAAAAGTGTTTTTGTGACA 57.865 29.630 5.14 0.00 45.59 3.58
862 866 9.651913 AAACATCTAAAAGTGTTTTTGTGACAT 57.348 25.926 0.00 0.00 43.80 3.06
863 867 9.651913 AACATCTAAAAGTGTTTTTGTGACATT 57.348 25.926 0.00 0.00 37.12 2.71
864 868 9.086336 ACATCTAAAAGTGTTTTTGTGACATTG 57.914 29.630 0.00 0.00 37.12 2.82
865 869 8.542132 CATCTAAAAGTGTTTTTGTGACATTGG 58.458 33.333 0.00 0.00 37.12 3.16
866 870 7.831753 TCTAAAAGTGTTTTTGTGACATTGGA 58.168 30.769 0.00 0.00 37.12 3.53
867 871 6.966435 AAAAGTGTTTTTGTGACATTGGAG 57.034 33.333 0.00 0.00 35.26 3.86
868 872 4.654091 AGTGTTTTTGTGACATTGGAGG 57.346 40.909 0.00 0.00 0.00 4.30
869 873 4.277476 AGTGTTTTTGTGACATTGGAGGA 58.723 39.130 0.00 0.00 0.00 3.71
870 874 4.895297 AGTGTTTTTGTGACATTGGAGGAT 59.105 37.500 0.00 0.00 0.00 3.24
871 875 5.010012 AGTGTTTTTGTGACATTGGAGGATC 59.990 40.000 0.00 0.00 0.00 3.36
872 876 5.010012 GTGTTTTTGTGACATTGGAGGATCT 59.990 40.000 0.00 0.00 33.73 2.75
873 877 5.009911 TGTTTTTGTGACATTGGAGGATCTG 59.990 40.000 0.00 0.00 33.73 2.90
874 878 4.371624 TTTGTGACATTGGAGGATCTGT 57.628 40.909 0.00 0.00 33.73 3.41
875 879 3.339253 TGTGACATTGGAGGATCTGTG 57.661 47.619 0.00 0.00 33.73 3.66
876 880 2.639347 TGTGACATTGGAGGATCTGTGT 59.361 45.455 0.00 0.00 33.73 3.72
877 881 3.072915 TGTGACATTGGAGGATCTGTGTT 59.927 43.478 0.00 0.00 33.73 3.32
878 882 3.686726 GTGACATTGGAGGATCTGTGTTC 59.313 47.826 0.00 0.00 33.73 3.18
879 883 3.584406 TGACATTGGAGGATCTGTGTTCT 59.416 43.478 0.00 0.00 33.73 3.01
880 884 3.937706 GACATTGGAGGATCTGTGTTCTG 59.062 47.826 0.00 0.00 33.73 3.02
881 885 3.328931 ACATTGGAGGATCTGTGTTCTGT 59.671 43.478 0.00 0.00 33.73 3.41
882 886 3.407424 TTGGAGGATCTGTGTTCTGTG 57.593 47.619 0.00 0.00 33.73 3.66
883 887 2.608623 TGGAGGATCTGTGTTCTGTGA 58.391 47.619 0.00 0.00 33.73 3.58
884 888 2.972021 TGGAGGATCTGTGTTCTGTGAA 59.028 45.455 0.00 0.00 33.73 3.18
885 889 3.244215 TGGAGGATCTGTGTTCTGTGAAC 60.244 47.826 3.74 3.74 33.73 3.18
886 890 3.244215 GGAGGATCTGTGTTCTGTGAACA 60.244 47.826 8.81 8.81 33.73 3.18
896 900 2.325583 TCTGTGAACACTGAACACCC 57.674 50.000 11.04 0.00 36.54 4.61
897 901 0.937304 CTGTGAACACTGAACACCCG 59.063 55.000 6.51 0.00 34.18 5.28
898 902 0.537653 TGTGAACACTGAACACCCGA 59.462 50.000 6.51 0.00 34.18 5.14
899 903 1.140052 TGTGAACACTGAACACCCGAT 59.860 47.619 6.51 0.00 34.18 4.18
900 904 2.365941 TGTGAACACTGAACACCCGATA 59.634 45.455 6.51 0.00 34.18 2.92
901 905 2.735134 GTGAACACTGAACACCCGATAC 59.265 50.000 0.00 0.00 0.00 2.24
902 906 2.631062 TGAACACTGAACACCCGATACT 59.369 45.455 0.00 0.00 0.00 2.12
903 907 3.070446 TGAACACTGAACACCCGATACTT 59.930 43.478 0.00 0.00 0.00 2.24
904 908 3.764237 ACACTGAACACCCGATACTTT 57.236 42.857 0.00 0.00 0.00 2.66
905 909 3.660865 ACACTGAACACCCGATACTTTC 58.339 45.455 0.00 0.00 0.00 2.62
906 910 3.000727 CACTGAACACCCGATACTTTCC 58.999 50.000 0.00 0.00 0.00 3.13
907 911 2.027469 ACTGAACACCCGATACTTTCCC 60.027 50.000 0.00 0.00 0.00 3.97
908 912 1.279846 TGAACACCCGATACTTTCCCC 59.720 52.381 0.00 0.00 0.00 4.81
909 913 1.558294 GAACACCCGATACTTTCCCCT 59.442 52.381 0.00 0.00 0.00 4.79
910 914 1.201424 ACACCCGATACTTTCCCCTC 58.799 55.000 0.00 0.00 0.00 4.30
911 915 0.468648 CACCCGATACTTTCCCCTCC 59.531 60.000 0.00 0.00 0.00 4.30
912 916 0.342313 ACCCGATACTTTCCCCTCCT 59.658 55.000 0.00 0.00 0.00 3.69
913 917 1.274242 ACCCGATACTTTCCCCTCCTT 60.274 52.381 0.00 0.00 0.00 3.36
914 918 1.416772 CCCGATACTTTCCCCTCCTTC 59.583 57.143 0.00 0.00 0.00 3.46
936 940 2.432628 GCCCGTCCTCACAGAACG 60.433 66.667 0.00 0.00 36.22 3.95
939 943 2.651361 CGTCCTCACAGAACGGCT 59.349 61.111 0.00 0.00 32.96 5.52
940 944 1.006102 CGTCCTCACAGAACGGCTT 60.006 57.895 0.00 0.00 32.96 4.35
949 957 0.249868 CAGAACGGCTTCCTGTCACA 60.250 55.000 0.00 0.00 0.00 3.58
1179 1193 2.430367 GTCCTGGGTGAAAGGCGT 59.570 61.111 0.00 0.00 34.56 5.68
1378 1392 7.433131 GCGTACATGTATGTAAGTGTAGCTAAA 59.567 37.037 22.87 0.00 44.11 1.85
1386 1400 3.283259 AAGTGTAGCTAAATCCCTGCC 57.717 47.619 0.00 0.00 0.00 4.85
1469 1483 6.039159 TGAGATCTGTACAGCTATGTTCTCAG 59.961 42.308 18.45 4.55 40.69 3.35
1482 1496 4.649088 TGTTCTCAGTGATACCATACGG 57.351 45.455 0.00 0.00 38.77 4.02
1484 1498 4.464951 TGTTCTCAGTGATACCATACGGTT 59.535 41.667 0.00 0.00 46.31 4.44
1485 1499 4.649088 TCTCAGTGATACCATACGGTTG 57.351 45.455 0.00 0.00 46.31 3.77
1486 1500 3.383505 TCTCAGTGATACCATACGGTTGG 59.616 47.826 4.49 4.49 46.31 3.77
1487 1501 3.367321 TCAGTGATACCATACGGTTGGA 58.633 45.455 12.32 0.00 46.31 3.53
1488 1502 3.383505 TCAGTGATACCATACGGTTGGAG 59.616 47.826 12.32 0.00 46.31 3.86
1489 1503 3.132289 CAGTGATACCATACGGTTGGAGT 59.868 47.826 12.32 1.16 46.31 3.85
1490 1504 4.340097 CAGTGATACCATACGGTTGGAGTA 59.660 45.833 12.32 0.00 46.31 2.59
1491 1505 4.340381 AGTGATACCATACGGTTGGAGTAC 59.660 45.833 12.32 6.21 46.31 2.73
1492 1506 4.340381 GTGATACCATACGGTTGGAGTACT 59.660 45.833 12.32 0.00 46.31 2.73
1493 1507 5.532406 GTGATACCATACGGTTGGAGTACTA 59.468 44.000 12.32 0.00 46.31 1.82
1494 1508 5.532406 TGATACCATACGGTTGGAGTACTAC 59.468 44.000 12.32 0.00 46.31 2.73
1495 1509 3.700538 ACCATACGGTTGGAGTACTACA 58.299 45.455 2.78 2.78 46.31 2.74
1496 1510 4.284178 ACCATACGGTTGGAGTACTACAT 58.716 43.478 9.08 0.00 46.31 2.29
1497 1511 5.448654 ACCATACGGTTGGAGTACTACATA 58.551 41.667 9.08 0.00 46.31 2.29
1498 1512 6.073314 ACCATACGGTTGGAGTACTACATAT 58.927 40.000 9.08 0.63 46.31 1.78
1499 1513 7.233632 ACCATACGGTTGGAGTACTACATATA 58.766 38.462 9.08 0.00 46.31 0.86
1500 1514 7.892241 ACCATACGGTTGGAGTACTACATATAT 59.108 37.037 9.08 2.24 46.31 0.86
1501 1515 8.188799 CCATACGGTTGGAGTACTACATATATG 58.811 40.741 9.08 13.25 39.25 1.78
1502 1516 6.585695 ACGGTTGGAGTACTACATATATGG 57.414 41.667 9.08 2.79 0.00 2.74
1503 1517 6.073314 ACGGTTGGAGTACTACATATATGGT 58.927 40.000 9.08 8.49 0.00 3.55
1504 1518 7.233632 ACGGTTGGAGTACTACATATATGGTA 58.766 38.462 9.08 7.56 0.00 3.25
1604 1641 5.521906 TTCTTCTGATCTAGTGATTCCCG 57.478 43.478 0.00 0.00 32.19 5.14
1662 1700 5.172934 TGTTGTAAGTTTCCTATAGGTGCG 58.827 41.667 18.51 0.00 36.34 5.34
1683 1721 5.642063 TGCGTAATTCTTAGTTGAGGAAAGG 59.358 40.000 0.00 0.00 0.00 3.11
1684 1722 5.447413 GCGTAATTCTTAGTTGAGGAAAGGC 60.447 44.000 0.00 0.00 0.00 4.35
1685 1723 5.875359 CGTAATTCTTAGTTGAGGAAAGGCT 59.125 40.000 0.00 0.00 0.00 4.58
1686 1724 7.039882 CGTAATTCTTAGTTGAGGAAAGGCTA 58.960 38.462 0.00 0.00 0.00 3.93
1688 1726 6.628644 ATTCTTAGTTGAGGAAAGGCTACT 57.371 37.500 0.00 0.00 0.00 2.57
1691 1729 5.780793 TCTTAGTTGAGGAAAGGCTACTCTT 59.219 40.000 12.89 0.00 32.58 2.85
1692 1730 6.952358 TCTTAGTTGAGGAAAGGCTACTCTTA 59.048 38.462 12.89 2.03 32.58 2.10
1693 1731 5.669164 AGTTGAGGAAAGGCTACTCTTAG 57.331 43.478 12.89 0.00 32.58 2.18
1701 1739 1.486211 GGCTACTCTTAGGCTGGTCA 58.514 55.000 0.00 0.00 45.50 4.02
1702 1740 2.043227 GGCTACTCTTAGGCTGGTCAT 58.957 52.381 0.00 0.00 45.50 3.06
1703 1741 3.231818 GGCTACTCTTAGGCTGGTCATA 58.768 50.000 0.00 0.00 45.50 2.15
1704 1742 3.257127 GGCTACTCTTAGGCTGGTCATAG 59.743 52.174 0.00 0.00 45.50 2.23
1705 1743 3.892588 GCTACTCTTAGGCTGGTCATAGT 59.107 47.826 0.00 0.00 0.00 2.12
1706 1744 4.261825 GCTACTCTTAGGCTGGTCATAGTG 60.262 50.000 0.00 0.00 0.00 2.74
1707 1745 3.034635 ACTCTTAGGCTGGTCATAGTGG 58.965 50.000 0.00 0.00 0.00 4.00
1708 1746 3.300388 CTCTTAGGCTGGTCATAGTGGA 58.700 50.000 0.00 0.00 0.00 4.02
1709 1747 3.300388 TCTTAGGCTGGTCATAGTGGAG 58.700 50.000 0.00 0.00 0.00 3.86
1710 1748 3.052869 TCTTAGGCTGGTCATAGTGGAGA 60.053 47.826 0.00 0.00 0.00 3.71
1711 1749 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
1712 1750 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
1713 1751 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
1714 1752 3.031736 GGCTGGTCATAGTGGAGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
1715 1753 3.181474 GGCTGGTCATAGTGGAGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
1716 1754 3.702045 GCTGGTCATAGTGGAGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
1717 1755 4.160626 GCTGGTCATAGTGGAGAGTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
1718 1756 5.360144 GCTGGTCATAGTGGAGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
1719 1757 6.460399 GCTGGTCATAGTGGAGAGTAACTTAG 60.460 46.154 0.00 0.00 0.00 2.18
1720 1758 6.728411 TGGTCATAGTGGAGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
1721 1759 6.602406 TGGTCATAGTGGAGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
1722 1760 6.829811 GGTCATAGTGGAGAGTAACTTAGACT 59.170 42.308 0.00 0.00 33.27 3.24
1723 1761 7.992033 GGTCATAGTGGAGAGTAACTTAGACTA 59.008 40.741 0.00 0.00 33.27 2.59
1724 1762 9.048446 GTCATAGTGGAGAGTAACTTAGACTAG 57.952 40.741 0.00 0.00 31.58 2.57
1725 1763 8.770322 TCATAGTGGAGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
1728 1766 8.791327 AGTGGAGAGTAACTTAGACTAGTAAC 57.209 38.462 0.00 0.00 0.00 2.50
1729 1767 8.381636 AGTGGAGAGTAACTTAGACTAGTAACA 58.618 37.037 0.00 0.00 0.00 2.41
1730 1768 9.176460 GTGGAGAGTAACTTAGACTAGTAACAT 57.824 37.037 0.00 0.00 0.00 2.71
1762 1800 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
1768 1806 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
1769 1807 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
1770 1808 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
1771 1809 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
1776 1814 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
1777 1815 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
1778 1816 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
1779 1817 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
1780 1818 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
1781 1819 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
1782 1820 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
1783 1821 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
1784 1822 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
1785 1823 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
1786 1824 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
1787 1825 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
1788 1826 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
1789 1827 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
1790 1828 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
1836 1874 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
1839 1877 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
1840 1878 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
1841 1879 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
1842 1880 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
1843 1881 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
1845 1883 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
1846 1884 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
1847 1885 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
1848 1886 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
1850 1888 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
1852 1890 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
1853 1891 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
1854 1892 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
1855 1893 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
1886 1924 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
1887 1925 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
1889 1927 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
1890 1928 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
1892 1930 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
1894 1932 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
1895 1933 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
1896 1934 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
1897 1935 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
1899 1937 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
1900 1938 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
1901 1939 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
1902 1940 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
1903 1941 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
1904 1942 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
1905 1943 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
1906 1944 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
1907 1945 5.065218 CCTCATTAACTACTTGCCACATCAC 59.935 44.000 0.00 0.00 0.00 3.06
1908 1946 5.804639 TCATTAACTACTTGCCACATCACT 58.195 37.500 0.00 0.00 0.00 3.41
1909 1947 6.941857 TCATTAACTACTTGCCACATCACTA 58.058 36.000 0.00 0.00 0.00 2.74
1910 1948 7.390823 TCATTAACTACTTGCCACATCACTAA 58.609 34.615 0.00 0.00 0.00 2.24
1911 1949 8.046708 TCATTAACTACTTGCCACATCACTAAT 58.953 33.333 0.00 0.00 0.00 1.73
1912 1950 8.677300 CATTAACTACTTGCCACATCACTAATT 58.323 33.333 0.00 0.00 0.00 1.40
1913 1951 8.630054 TTAACTACTTGCCACATCACTAATTT 57.370 30.769 0.00 0.00 0.00 1.82
1914 1952 7.524717 AACTACTTGCCACATCACTAATTTT 57.475 32.000 0.00 0.00 0.00 1.82
1915 1953 6.913170 ACTACTTGCCACATCACTAATTTTG 58.087 36.000 0.00 0.00 0.00 2.44
1916 1954 4.559153 ACTTGCCACATCACTAATTTTGC 58.441 39.130 0.00 0.00 0.00 3.68
1917 1955 4.281688 ACTTGCCACATCACTAATTTTGCT 59.718 37.500 0.00 0.00 0.00 3.91
1918 1956 4.870123 TGCCACATCACTAATTTTGCTT 57.130 36.364 0.00 0.00 0.00 3.91
1919 1957 5.973899 TGCCACATCACTAATTTTGCTTA 57.026 34.783 0.00 0.00 0.00 3.09
1920 1958 6.528537 TGCCACATCACTAATTTTGCTTAT 57.471 33.333 0.00 0.00 0.00 1.73
1921 1959 6.331845 TGCCACATCACTAATTTTGCTTATG 58.668 36.000 0.00 0.00 0.00 1.90
1922 1960 6.071447 TGCCACATCACTAATTTTGCTTATGT 60.071 34.615 0.00 0.00 0.00 2.29
1923 1961 6.254157 GCCACATCACTAATTTTGCTTATGTG 59.746 38.462 0.00 0.00 41.50 3.21
1924 1962 7.745022 CACATCACTAATTTTGCTTATGTGG 57.255 36.000 0.00 0.00 39.34 4.17
1925 1963 6.254157 CACATCACTAATTTTGCTTATGTGGC 59.746 38.462 0.00 0.00 39.34 5.01
1926 1964 5.973899 TCACTAATTTTGCTTATGTGGCA 57.026 34.783 0.00 0.00 37.97 4.92
1927 1965 6.528537 TCACTAATTTTGCTTATGTGGCAT 57.471 33.333 0.00 0.00 39.54 4.40
1928 1966 6.563422 TCACTAATTTTGCTTATGTGGCATC 58.437 36.000 0.00 0.00 39.54 3.91
1929 1967 6.377996 TCACTAATTTTGCTTATGTGGCATCT 59.622 34.615 0.00 0.00 39.54 2.90
1930 1968 7.555914 TCACTAATTTTGCTTATGTGGCATCTA 59.444 33.333 0.00 0.00 39.54 1.98
1931 1969 8.355169 CACTAATTTTGCTTATGTGGCATCTAT 58.645 33.333 0.00 0.00 39.54 1.98
1932 1970 8.355169 ACTAATTTTGCTTATGTGGCATCTATG 58.645 33.333 0.00 0.00 39.54 2.23
1933 1971 6.720112 ATTTTGCTTATGTGGCATCTATGT 57.280 33.333 0.00 0.00 39.54 2.29
1934 1972 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
1935 1973 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
1936 1974 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
1937 1975 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
1938 1976 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
1939 1977 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
1940 1978 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
1941 1979 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
1942 1980 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
1943 1981 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
1944 1982 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
1945 1983 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
1946 1984 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
1947 1985 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
1948 1986 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
1949 1987 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
1950 1988 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
1952 1990 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
1953 1991 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
1954 1992 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
1955 1993 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
1956 1994 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
1957 1995 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
1958 1996 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
1959 1997 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
1960 1998 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
1961 1999 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
1962 2000 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
1963 2001 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
1964 2002 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
2007 2047 3.005155 AGCAAGCACAATCTGAAAACCTC 59.995 43.478 0.00 0.00 0.00 3.85
2028 2068 2.761208 CGGATAGGTCATAGGTGATCCC 59.239 54.545 0.00 0.00 36.04 3.85
2110 2153 4.744136 ATGATTACATCTTGAGCATGCG 57.256 40.909 13.01 0.00 29.98 4.73
2115 2158 1.089112 CATCTTGAGCATGCGGTTCA 58.911 50.000 13.01 8.11 34.67 3.18
2161 2207 3.865929 CTCGCTGCGTGGGAACTGT 62.866 63.158 22.48 0.00 37.18 3.55
2204 2250 0.178767 CCATGACCCTTCTCATCGCA 59.821 55.000 0.00 0.00 0.00 5.10
2285 2331 1.949847 TTAGCTCCTCCTGTGCTCGC 61.950 60.000 0.00 0.00 42.57 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.342473 GCGTACGTTACATGGCACG 59.658 57.895 17.90 15.22 42.29 5.34
96 98 7.437713 TTGGTGTCAGATATGGAAGTTATCT 57.562 36.000 0.00 0.00 36.97 1.98
143 145 9.444600 GTAAACTAAAACACTCTAATGGGATGA 57.555 33.333 0.00 0.00 0.00 2.92
358 360 4.582869 TCAAGAGTGGTTGATCTGATTGG 58.417 43.478 0.00 0.00 31.31 3.16
471 475 1.765904 TGGCTATATTTGGCGAGTGGA 59.234 47.619 0.00 0.00 0.00 4.02
492 496 4.253685 GCAGGCATTACTACTCTGAAACA 58.746 43.478 0.00 0.00 0.00 2.83
543 547 4.382254 GCTGAATTCCAAGCCAAATCATGA 60.382 41.667 0.00 0.00 0.00 3.07
548 552 3.167485 TCTGCTGAATTCCAAGCCAAAT 58.833 40.909 13.54 0.00 0.00 2.32
606 610 4.532126 TGATAATCCTGACTCCTTGTGTGT 59.468 41.667 0.00 0.00 0.00 3.72
665 669 5.220854 CCAAATTTAAGGTGGATAGCTCGTG 60.221 44.000 0.00 0.00 34.05 4.35
666 670 4.881850 CCAAATTTAAGGTGGATAGCTCGT 59.118 41.667 0.00 0.00 34.05 4.18
667 671 4.881850 ACCAAATTTAAGGTGGATAGCTCG 59.118 41.667 0.00 0.00 36.60 5.03
682 686 9.040939 GTTGCTTTGTCTTATAACACCAAATTT 57.959 29.630 0.00 0.00 0.00 1.82
683 687 8.200792 TGTTGCTTTGTCTTATAACACCAAATT 58.799 29.630 0.00 0.00 0.00 1.82
684 688 7.721402 TGTTGCTTTGTCTTATAACACCAAAT 58.279 30.769 0.00 0.00 0.00 2.32
685 689 7.101652 TGTTGCTTTGTCTTATAACACCAAA 57.898 32.000 0.00 0.00 0.00 3.28
686 690 6.701145 TGTTGCTTTGTCTTATAACACCAA 57.299 33.333 0.00 0.00 0.00 3.67
687 691 6.892658 ATGTTGCTTTGTCTTATAACACCA 57.107 33.333 0.00 0.00 31.75 4.17
688 692 9.124807 GTTAATGTTGCTTTGTCTTATAACACC 57.875 33.333 0.00 0.00 31.75 4.16
689 693 9.672086 TGTTAATGTTGCTTTGTCTTATAACAC 57.328 29.630 0.00 0.00 31.75 3.32
690 694 9.672086 GTGTTAATGTTGCTTTGTCTTATAACA 57.328 29.630 0.00 0.00 33.26 2.41
691 695 9.893305 AGTGTTAATGTTGCTTTGTCTTATAAC 57.107 29.630 0.00 0.00 0.00 1.89
696 700 8.629158 TGAATAGTGTTAATGTTGCTTTGTCTT 58.371 29.630 0.00 0.00 0.00 3.01
697 701 8.076178 GTGAATAGTGTTAATGTTGCTTTGTCT 58.924 33.333 0.00 0.00 0.00 3.41
698 702 7.860373 TGTGAATAGTGTTAATGTTGCTTTGTC 59.140 33.333 0.00 0.00 0.00 3.18
699 703 7.711846 TGTGAATAGTGTTAATGTTGCTTTGT 58.288 30.769 0.00 0.00 0.00 2.83
700 704 8.746922 ATGTGAATAGTGTTAATGTTGCTTTG 57.253 30.769 0.00 0.00 0.00 2.77
701 705 9.762933 AAATGTGAATAGTGTTAATGTTGCTTT 57.237 25.926 0.00 0.00 0.00 3.51
702 706 9.195411 CAAATGTGAATAGTGTTAATGTTGCTT 57.805 29.630 0.00 0.00 0.00 3.91
703 707 7.814107 CCAAATGTGAATAGTGTTAATGTTGCT 59.186 33.333 0.00 0.00 0.00 3.91
704 708 7.812191 TCCAAATGTGAATAGTGTTAATGTTGC 59.188 33.333 0.00 0.00 0.00 4.17
705 709 9.859427 ATCCAAATGTGAATAGTGTTAATGTTG 57.141 29.630 0.00 0.00 0.00 3.33
707 711 9.859427 CAATCCAAATGTGAATAGTGTTAATGT 57.141 29.630 0.00 0.00 0.00 2.71
708 712 9.859427 ACAATCCAAATGTGAATAGTGTTAATG 57.141 29.630 0.00 0.00 0.00 1.90
712 716 9.612066 AAAAACAATCCAAATGTGAATAGTGTT 57.388 25.926 0.00 0.00 0.00 3.32
741 745 8.776470 CCAAACTTAAAATGCACATTGAGAAAT 58.224 29.630 10.82 0.00 0.00 2.17
742 746 7.984050 TCCAAACTTAAAATGCACATTGAGAAA 59.016 29.630 10.82 0.00 0.00 2.52
743 747 7.437862 GTCCAAACTTAAAATGCACATTGAGAA 59.562 33.333 10.82 0.00 0.00 2.87
744 748 6.922957 GTCCAAACTTAAAATGCACATTGAGA 59.077 34.615 10.82 0.00 0.00 3.27
745 749 6.925165 AGTCCAAACTTAAAATGCACATTGAG 59.075 34.615 0.00 0.00 28.74 3.02
746 750 6.815089 AGTCCAAACTTAAAATGCACATTGA 58.185 32.000 0.00 0.00 28.74 2.57
747 751 7.224362 TCAAGTCCAAACTTAAAATGCACATTG 59.776 33.333 0.00 0.00 43.99 2.82
748 752 7.271511 TCAAGTCCAAACTTAAAATGCACATT 58.728 30.769 0.00 0.00 43.99 2.71
749 753 6.815089 TCAAGTCCAAACTTAAAATGCACAT 58.185 32.000 0.00 0.00 43.99 3.21
750 754 6.214191 TCAAGTCCAAACTTAAAATGCACA 57.786 33.333 0.00 0.00 43.99 4.57
751 755 7.532682 TTTCAAGTCCAAACTTAAAATGCAC 57.467 32.000 0.00 0.00 43.99 4.57
752 756 8.729805 AATTTCAAGTCCAAACTTAAAATGCA 57.270 26.923 1.26 0.00 40.81 3.96
760 764 7.710907 GCCTCTAAAAATTTCAAGTCCAAACTT 59.289 33.333 0.00 0.00 46.80 2.66
761 765 7.069950 AGCCTCTAAAAATTTCAAGTCCAAACT 59.930 33.333 0.00 0.00 37.32 2.66
762 766 7.169813 CAGCCTCTAAAAATTTCAAGTCCAAAC 59.830 37.037 0.00 0.00 0.00 2.93
763 767 7.147742 ACAGCCTCTAAAAATTTCAAGTCCAAA 60.148 33.333 0.00 0.00 0.00 3.28
764 768 6.323739 ACAGCCTCTAAAAATTTCAAGTCCAA 59.676 34.615 0.00 0.00 0.00 3.53
765 769 5.833131 ACAGCCTCTAAAAATTTCAAGTCCA 59.167 36.000 0.00 0.00 0.00 4.02
766 770 6.332735 ACAGCCTCTAAAAATTTCAAGTCC 57.667 37.500 0.00 0.00 0.00 3.85
767 771 8.100508 AGTACAGCCTCTAAAAATTTCAAGTC 57.899 34.615 0.00 0.00 0.00 3.01
768 772 7.719633 TGAGTACAGCCTCTAAAAATTTCAAGT 59.280 33.333 0.00 0.00 32.50 3.16
769 773 8.017946 GTGAGTACAGCCTCTAAAAATTTCAAG 58.982 37.037 0.00 0.00 32.50 3.02
770 774 7.500892 TGTGAGTACAGCCTCTAAAAATTTCAA 59.499 33.333 0.00 0.00 32.50 2.69
771 775 6.995686 TGTGAGTACAGCCTCTAAAAATTTCA 59.004 34.615 0.00 0.00 32.50 2.69
772 776 7.435068 TGTGAGTACAGCCTCTAAAAATTTC 57.565 36.000 0.00 0.00 32.50 2.17
773 777 8.409358 AATGTGAGTACAGCCTCTAAAAATTT 57.591 30.769 0.00 0.00 40.79 1.82
774 778 7.121315 GGAATGTGAGTACAGCCTCTAAAAATT 59.879 37.037 0.00 0.00 40.79 1.82
775 779 6.599638 GGAATGTGAGTACAGCCTCTAAAAAT 59.400 38.462 0.00 0.00 40.79 1.82
776 780 5.938125 GGAATGTGAGTACAGCCTCTAAAAA 59.062 40.000 0.00 0.00 40.79 1.94
777 781 5.248477 AGGAATGTGAGTACAGCCTCTAAAA 59.752 40.000 0.00 0.00 39.81 1.52
778 782 4.777896 AGGAATGTGAGTACAGCCTCTAAA 59.222 41.667 0.00 0.00 39.81 1.85
779 783 4.353777 AGGAATGTGAGTACAGCCTCTAA 58.646 43.478 0.00 0.00 39.81 2.10
780 784 3.982516 AGGAATGTGAGTACAGCCTCTA 58.017 45.455 0.00 0.00 39.81 2.43
781 785 2.826488 AGGAATGTGAGTACAGCCTCT 58.174 47.619 0.00 0.00 39.81 3.69
782 786 3.618690 AAGGAATGTGAGTACAGCCTC 57.381 47.619 0.00 0.00 41.79 4.70
783 787 4.716784 TCATAAGGAATGTGAGTACAGCCT 59.283 41.667 0.00 0.00 43.40 4.58
784 788 5.023533 TCATAAGGAATGTGAGTACAGCC 57.976 43.478 0.00 0.00 40.79 4.85
785 789 5.874810 TGTTCATAAGGAATGTGAGTACAGC 59.125 40.000 0.00 0.00 40.79 4.40
786 790 7.765819 TGATGTTCATAAGGAATGTGAGTACAG 59.234 37.037 0.00 0.00 40.79 2.74
787 791 7.619965 TGATGTTCATAAGGAATGTGAGTACA 58.380 34.615 0.00 0.00 41.89 2.90
788 792 7.981789 TCTGATGTTCATAAGGAATGTGAGTAC 59.018 37.037 0.00 0.00 37.93 2.73
789 793 8.078060 TCTGATGTTCATAAGGAATGTGAGTA 57.922 34.615 0.00 0.00 37.93 2.59
790 794 6.950842 TCTGATGTTCATAAGGAATGTGAGT 58.049 36.000 0.00 0.00 37.93 3.41
791 795 8.447924 AATCTGATGTTCATAAGGAATGTGAG 57.552 34.615 0.00 0.00 37.93 3.51
792 796 8.812513 AAATCTGATGTTCATAAGGAATGTGA 57.187 30.769 0.00 0.00 37.93 3.58
793 797 9.865321 AAAAATCTGATGTTCATAAGGAATGTG 57.135 29.630 0.00 0.00 37.93 3.21
818 822 7.496747 AGATGTTTCAAGAAATTCCGGAAAAA 58.503 30.769 23.08 12.28 32.36 1.94
819 823 7.049799 AGATGTTTCAAGAAATTCCGGAAAA 57.950 32.000 23.08 6.01 32.36 2.29
820 824 6.648879 AGATGTTTCAAGAAATTCCGGAAA 57.351 33.333 23.08 4.74 32.36 3.13
821 825 7.753309 TTAGATGTTTCAAGAAATTCCGGAA 57.247 32.000 21.37 21.37 32.36 4.30
822 826 7.753309 TTTAGATGTTTCAAGAAATTCCGGA 57.247 32.000 0.00 0.00 32.36 5.14
823 827 8.082242 ACTTTTAGATGTTTCAAGAAATTCCGG 58.918 33.333 0.00 0.00 32.36 5.14
824 828 8.905702 CACTTTTAGATGTTTCAAGAAATTCCG 58.094 33.333 0.00 0.00 32.36 4.30
825 829 9.750125 ACACTTTTAGATGTTTCAAGAAATTCC 57.250 29.630 0.00 0.00 32.36 3.01
831 835 9.921637 ACAAAAACACTTTTAGATGTTTCAAGA 57.078 25.926 3.06 0.00 45.86 3.02
832 836 9.956797 CACAAAAACACTTTTAGATGTTTCAAG 57.043 29.630 3.06 0.43 45.86 3.02
833 837 9.698309 TCACAAAAACACTTTTAGATGTTTCAA 57.302 25.926 3.06 0.00 45.86 2.69
834 838 9.134734 GTCACAAAAACACTTTTAGATGTTTCA 57.865 29.630 3.06 0.00 45.86 2.69
835 839 9.134734 TGTCACAAAAACACTTTTAGATGTTTC 57.865 29.630 3.06 0.00 45.86 2.78
837 841 9.651913 AATGTCACAAAAACACTTTTAGATGTT 57.348 25.926 0.00 0.00 40.76 2.71
838 842 9.086336 CAATGTCACAAAAACACTTTTAGATGT 57.914 29.630 0.00 0.00 32.85 3.06
839 843 8.542132 CCAATGTCACAAAAACACTTTTAGATG 58.458 33.333 0.00 0.00 32.85 2.90
840 844 8.474025 TCCAATGTCACAAAAACACTTTTAGAT 58.526 29.630 0.00 0.00 32.85 1.98
841 845 7.831753 TCCAATGTCACAAAAACACTTTTAGA 58.168 30.769 0.00 0.00 32.85 2.10
842 846 7.222611 CCTCCAATGTCACAAAAACACTTTTAG 59.777 37.037 0.00 0.00 32.85 1.85
843 847 7.038659 CCTCCAATGTCACAAAAACACTTTTA 58.961 34.615 0.00 0.00 32.85 1.52
844 848 5.874261 CCTCCAATGTCACAAAAACACTTTT 59.126 36.000 0.00 0.00 35.02 2.27
845 849 5.186797 TCCTCCAATGTCACAAAAACACTTT 59.813 36.000 0.00 0.00 0.00 2.66
846 850 4.709397 TCCTCCAATGTCACAAAAACACTT 59.291 37.500 0.00 0.00 0.00 3.16
847 851 4.277476 TCCTCCAATGTCACAAAAACACT 58.723 39.130 0.00 0.00 0.00 3.55
848 852 4.647424 TCCTCCAATGTCACAAAAACAC 57.353 40.909 0.00 0.00 0.00 3.32
849 853 5.009911 CAGATCCTCCAATGTCACAAAAACA 59.990 40.000 0.00 0.00 0.00 2.83
850 854 5.010012 ACAGATCCTCCAATGTCACAAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
851 855 5.009911 CACAGATCCTCCAATGTCACAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
852 856 4.520111 CACAGATCCTCCAATGTCACAAAA 59.480 41.667 0.00 0.00 0.00 2.44
853 857 4.074259 CACAGATCCTCCAATGTCACAAA 58.926 43.478 0.00 0.00 0.00 2.83
854 858 3.072915 ACACAGATCCTCCAATGTCACAA 59.927 43.478 0.00 0.00 0.00 3.33
855 859 2.639347 ACACAGATCCTCCAATGTCACA 59.361 45.455 0.00 0.00 0.00 3.58
856 860 3.340814 ACACAGATCCTCCAATGTCAC 57.659 47.619 0.00 0.00 0.00 3.67
857 861 3.584406 AGAACACAGATCCTCCAATGTCA 59.416 43.478 0.00 0.00 0.00 3.58
858 862 3.937706 CAGAACACAGATCCTCCAATGTC 59.062 47.826 0.00 0.00 0.00 3.06
859 863 3.328931 ACAGAACACAGATCCTCCAATGT 59.671 43.478 0.00 0.00 0.00 2.71
860 864 3.688185 CACAGAACACAGATCCTCCAATG 59.312 47.826 0.00 0.00 0.00 2.82
861 865 3.584406 TCACAGAACACAGATCCTCCAAT 59.416 43.478 0.00 0.00 0.00 3.16
862 866 2.972021 TCACAGAACACAGATCCTCCAA 59.028 45.455 0.00 0.00 0.00 3.53
863 867 2.608623 TCACAGAACACAGATCCTCCA 58.391 47.619 0.00 0.00 0.00 3.86
864 868 3.244215 TGTTCACAGAACACAGATCCTCC 60.244 47.826 8.39 0.00 0.00 4.30
865 869 3.995199 TGTTCACAGAACACAGATCCTC 58.005 45.455 8.39 0.00 0.00 3.71
874 878 3.006940 GGTGTTCAGTGTTCACAGAACA 58.993 45.455 27.34 27.34 45.57 3.18
875 879 2.354821 GGGTGTTCAGTGTTCACAGAAC 59.645 50.000 24.13 24.13 40.45 3.01
876 880 2.639065 GGGTGTTCAGTGTTCACAGAA 58.361 47.619 17.06 6.67 34.27 3.02
877 881 1.472552 CGGGTGTTCAGTGTTCACAGA 60.473 52.381 17.06 0.00 34.27 3.41
878 882 0.937304 CGGGTGTTCAGTGTTCACAG 59.063 55.000 17.06 9.86 34.27 3.66
879 883 0.537653 TCGGGTGTTCAGTGTTCACA 59.462 50.000 17.06 5.86 34.27 3.58
880 884 1.878953 ATCGGGTGTTCAGTGTTCAC 58.121 50.000 10.37 10.37 0.00 3.18
881 885 2.631062 AGTATCGGGTGTTCAGTGTTCA 59.369 45.455 0.00 0.00 0.00 3.18
882 886 3.314541 AGTATCGGGTGTTCAGTGTTC 57.685 47.619 0.00 0.00 0.00 3.18
883 887 3.764237 AAGTATCGGGTGTTCAGTGTT 57.236 42.857 0.00 0.00 0.00 3.32
884 888 3.556423 GGAAAGTATCGGGTGTTCAGTGT 60.556 47.826 0.00 0.00 0.00 3.55
885 889 3.000727 GGAAAGTATCGGGTGTTCAGTG 58.999 50.000 0.00 0.00 0.00 3.66
886 890 2.027469 GGGAAAGTATCGGGTGTTCAGT 60.027 50.000 0.00 0.00 0.00 3.41
887 891 2.629051 GGGAAAGTATCGGGTGTTCAG 58.371 52.381 0.00 0.00 0.00 3.02
888 892 1.279846 GGGGAAAGTATCGGGTGTTCA 59.720 52.381 0.00 0.00 0.00 3.18
889 893 1.558294 AGGGGAAAGTATCGGGTGTTC 59.442 52.381 0.00 0.00 0.00 3.18
890 894 1.558294 GAGGGGAAAGTATCGGGTGTT 59.442 52.381 0.00 0.00 0.00 3.32
891 895 1.201424 GAGGGGAAAGTATCGGGTGT 58.799 55.000 0.00 0.00 0.00 4.16
892 896 0.468648 GGAGGGGAAAGTATCGGGTG 59.531 60.000 0.00 0.00 0.00 4.61
893 897 0.342313 AGGAGGGGAAAGTATCGGGT 59.658 55.000 0.00 0.00 0.00 5.28
894 898 1.416772 GAAGGAGGGGAAAGTATCGGG 59.583 57.143 0.00 0.00 0.00 5.14
895 899 1.416772 GGAAGGAGGGGAAAGTATCGG 59.583 57.143 0.00 0.00 0.00 4.18
896 900 1.068741 CGGAAGGAGGGGAAAGTATCG 59.931 57.143 0.00 0.00 0.00 2.92
897 901 1.202663 GCGGAAGGAGGGGAAAGTATC 60.203 57.143 0.00 0.00 0.00 2.24
898 902 0.837940 GCGGAAGGAGGGGAAAGTAT 59.162 55.000 0.00 0.00 0.00 2.12
899 903 0.252558 AGCGGAAGGAGGGGAAAGTA 60.253 55.000 0.00 0.00 0.00 2.24
900 904 1.539124 AGCGGAAGGAGGGGAAAGT 60.539 57.895 0.00 0.00 0.00 2.66
901 905 1.078143 CAGCGGAAGGAGGGGAAAG 60.078 63.158 0.00 0.00 0.00 2.62
902 906 3.077907 CAGCGGAAGGAGGGGAAA 58.922 61.111 0.00 0.00 0.00 3.13
903 907 3.717294 GCAGCGGAAGGAGGGGAA 61.717 66.667 0.00 0.00 0.00 3.97
908 912 4.821589 GACGGGCAGCGGAAGGAG 62.822 72.222 0.00 0.00 0.00 3.69
911 915 4.821589 GAGGACGGGCAGCGGAAG 62.822 72.222 0.00 0.00 0.00 3.46
922 926 1.006102 AAGCCGTTCTGTGAGGACG 60.006 57.895 0.00 0.00 0.00 4.79
936 940 1.600916 GGGTGTGTGACAGGAAGCC 60.601 63.158 0.00 0.00 0.00 4.35
937 941 1.600916 GGGGTGTGTGACAGGAAGC 60.601 63.158 0.00 0.00 0.00 3.86
938 942 0.401738 ATGGGGTGTGTGACAGGAAG 59.598 55.000 0.00 0.00 0.00 3.46
939 943 0.400213 GATGGGGTGTGTGACAGGAA 59.600 55.000 0.00 0.00 0.00 3.36
940 944 0.766288 TGATGGGGTGTGTGACAGGA 60.766 55.000 0.00 0.00 0.00 3.86
1034 1048 2.840102 ATCTCCGCTTCCTCCCGG 60.840 66.667 0.00 0.00 45.64 5.73
1203 1217 3.068691 CCCTGACTCGCCTCGGAA 61.069 66.667 0.00 0.00 0.00 4.30
1378 1392 2.587247 CCGGATGATCGGCAGGGAT 61.587 63.158 0.00 0.00 43.71 3.85
1386 1400 3.504134 ACTAATGAGACTCCGGATGATCG 59.496 47.826 3.57 0.00 0.00 3.69
1428 1442 4.906664 AGATCTCAAGCTCATCCAACCTAT 59.093 41.667 0.00 0.00 0.00 2.57
1493 1507 9.396022 GCAAGGCAATATTACTACCATATATGT 57.604 33.333 11.73 3.03 0.00 2.29
1494 1508 9.618890 AGCAAGGCAATATTACTACCATATATG 57.381 33.333 5.68 5.68 0.00 1.78
1495 1509 9.618890 CAGCAAGGCAATATTACTACCATATAT 57.381 33.333 0.00 0.00 0.00 0.86
1496 1510 8.602424 ACAGCAAGGCAATATTACTACCATATA 58.398 33.333 0.00 0.00 0.00 0.86
1497 1511 7.391554 CACAGCAAGGCAATATTACTACCATAT 59.608 37.037 0.00 0.00 0.00 1.78
1498 1512 6.710295 CACAGCAAGGCAATATTACTACCATA 59.290 38.462 0.00 0.00 0.00 2.74
1499 1513 5.532406 CACAGCAAGGCAATATTACTACCAT 59.468 40.000 0.00 0.00 0.00 3.55
1500 1514 4.881273 CACAGCAAGGCAATATTACTACCA 59.119 41.667 0.00 0.00 0.00 3.25
1501 1515 4.275936 CCACAGCAAGGCAATATTACTACC 59.724 45.833 0.00 0.00 0.00 3.18
1502 1516 4.881850 ACCACAGCAAGGCAATATTACTAC 59.118 41.667 0.00 0.00 0.00 2.73
1503 1517 5.110814 ACCACAGCAAGGCAATATTACTA 57.889 39.130 0.00 0.00 0.00 1.82
1504 1518 3.968265 ACCACAGCAAGGCAATATTACT 58.032 40.909 0.00 0.00 0.00 2.24
1604 1641 7.225734 GCACTAATTTTCCTAGATTCAGTCCTC 59.774 40.741 0.00 0.00 0.00 3.71
1662 1700 8.041919 AGTAGCCTTTCCTCAACTAAGAATTAC 58.958 37.037 0.00 0.00 0.00 1.89
1683 1721 3.892588 ACTATGACCAGCCTAAGAGTAGC 59.107 47.826 0.00 0.00 0.00 3.58
1684 1722 4.279671 CCACTATGACCAGCCTAAGAGTAG 59.720 50.000 0.00 0.00 0.00 2.57
1685 1723 4.079385 TCCACTATGACCAGCCTAAGAGTA 60.079 45.833 0.00 0.00 0.00 2.59
1686 1724 3.034635 CCACTATGACCAGCCTAAGAGT 58.965 50.000 0.00 0.00 0.00 3.24
1688 1726 3.052869 TCTCCACTATGACCAGCCTAAGA 60.053 47.826 0.00 0.00 0.00 2.10
1691 1729 2.245028 ACTCTCCACTATGACCAGCCTA 59.755 50.000 0.00 0.00 0.00 3.93
1692 1730 1.007721 ACTCTCCACTATGACCAGCCT 59.992 52.381 0.00 0.00 0.00 4.58
1693 1731 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
1696 1734 6.602406 GTCTAAGTTACTCTCCACTATGACCA 59.398 42.308 0.00 0.00 0.00 4.02
1697 1735 6.829811 AGTCTAAGTTACTCTCCACTATGACC 59.170 42.308 0.00 0.00 31.22 4.02
1698 1736 7.868906 AGTCTAAGTTACTCTCCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
1699 1737 8.770322 ACTAGTCTAAGTTACTCTCCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
1700 1738 8.967664 ACTAGTCTAAGTTACTCTCCACTATG 57.032 38.462 0.00 0.00 0.00 2.23
1702 1740 9.883142 GTTACTAGTCTAAGTTACTCTCCACTA 57.117 37.037 0.00 0.00 0.00 2.74
1703 1741 8.381636 TGTTACTAGTCTAAGTTACTCTCCACT 58.618 37.037 0.00 0.00 31.82 4.00
1704 1742 8.558973 TGTTACTAGTCTAAGTTACTCTCCAC 57.441 38.462 0.00 0.00 31.82 4.02
1736 1774 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
1742 1780 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
1743 1781 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
1744 1782 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
1745 1783 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
1746 1784 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
1747 1785 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
1748 1786 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
1755 1793 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
1756 1794 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
1757 1795 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
1758 1796 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
1759 1797 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
1760 1798 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
1761 1799 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
1762 1800 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
1763 1801 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
1764 1802 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
1765 1803 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
1766 1804 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
1767 1805 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
1768 1806 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
1769 1807 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
1770 1808 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
1771 1809 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
1772 1810 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
1773 1811 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
1774 1812 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
1775 1813 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
1776 1814 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
1777 1815 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
1778 1816 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
1779 1817 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
1808 1846 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
1809 1847 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
1810 1848 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
1811 1849 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
1812 1850 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
1813 1851 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
1814 1852 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
1815 1853 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
1816 1854 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
1817 1855 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
1818 1856 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
1819 1857 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
1820 1858 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
1821 1859 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
1822 1860 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
1823 1861 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
1824 1862 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
1825 1863 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
1826 1864 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
1836 1874 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
1839 1877 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
1859 1897 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
1861 1899 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
1864 1902 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
1866 1904 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
1867 1905 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
1868 1906 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
1870 1908 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
1871 1909 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
1872 1910 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
1874 1912 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
1875 1913 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
1876 1914 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
1879 1917 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
1880 1918 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
1881 1919 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
1882 1920 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
1883 1921 5.065218 GTGATGTGGCAAGTAGTTAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
1886 1924 7.609760 TTAGTGATGTGGCAAGTAGTTAATG 57.390 36.000 0.00 0.00 0.00 1.90
1887 1925 8.807948 AATTAGTGATGTGGCAAGTAGTTAAT 57.192 30.769 0.00 0.00 0.00 1.40
1889 1927 8.511321 CAAAATTAGTGATGTGGCAAGTAGTTA 58.489 33.333 0.00 0.00 0.00 2.24
1890 1928 7.370383 CAAAATTAGTGATGTGGCAAGTAGTT 58.630 34.615 0.00 0.00 0.00 2.24
1892 1930 5.801947 GCAAAATTAGTGATGTGGCAAGTAG 59.198 40.000 0.00 0.00 0.00 2.57
1894 1932 4.281688 AGCAAAATTAGTGATGTGGCAAGT 59.718 37.500 0.00 0.00 0.00 3.16
1895 1933 4.813027 AGCAAAATTAGTGATGTGGCAAG 58.187 39.130 0.00 0.00 0.00 4.01
1896 1934 4.870123 AGCAAAATTAGTGATGTGGCAA 57.130 36.364 0.00 0.00 0.00 4.52
1897 1935 4.870123 AAGCAAAATTAGTGATGTGGCA 57.130 36.364 0.00 0.00 0.00 4.92
1899 1937 6.753279 CCACATAAGCAAAATTAGTGATGTGG 59.247 38.462 17.77 17.77 45.85 4.17
1900 1938 6.254157 GCCACATAAGCAAAATTAGTGATGTG 59.746 38.462 0.00 0.00 36.43 3.21
1901 1939 6.071447 TGCCACATAAGCAAAATTAGTGATGT 60.071 34.615 0.00 0.00 37.28 3.06
1902 1940 6.331845 TGCCACATAAGCAAAATTAGTGATG 58.668 36.000 0.00 0.00 37.28 3.07
1903 1941 6.528537 TGCCACATAAGCAAAATTAGTGAT 57.471 33.333 0.00 0.00 37.28 3.06
1904 1942 5.973899 TGCCACATAAGCAAAATTAGTGA 57.026 34.783 0.00 0.00 37.28 3.41
1905 1943 6.567050 AGATGCCACATAAGCAAAATTAGTG 58.433 36.000 0.00 0.00 44.83 2.74
1906 1944 6.780457 AGATGCCACATAAGCAAAATTAGT 57.220 33.333 0.00 0.00 44.83 2.24
1907 1945 8.355169 ACATAGATGCCACATAAGCAAAATTAG 58.645 33.333 0.00 0.00 44.83 1.73
1908 1946 8.236585 ACATAGATGCCACATAAGCAAAATTA 57.763 30.769 0.00 0.00 44.83 1.40
1909 1947 7.116075 ACATAGATGCCACATAAGCAAAATT 57.884 32.000 0.00 0.00 44.83 1.82
1910 1948 6.720112 ACATAGATGCCACATAAGCAAAAT 57.280 33.333 0.00 0.00 44.83 1.82
1911 1949 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
1912 1950 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
1913 1951 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
1914 1952 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
1915 1953 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
1916 1954 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
1917 1955 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
1918 1956 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
1919 1957 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
1920 1958 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
1921 1959 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
1922 1960 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
1923 1961 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
1924 1962 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
1926 1964 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
1927 1965 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
1928 1966 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
1929 1967 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
1930 1968 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
1931 1969 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
1932 1970 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
1933 1971 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
1934 1972 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
1935 1973 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
1936 1974 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
1937 1975 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
1938 1976 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
1939 1977 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
1940 1978 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
1941 1979 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
1942 1980 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
1943 1981 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
1944 1982 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
1945 1983 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
1946 1984 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
1947 1985 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
1948 1986 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
1949 1987 2.398588 CTAAGGCTGGTCATAGTGGGA 58.601 52.381 0.00 0.00 0.00 4.37
1950 1988 1.417890 CCTAAGGCTGGTCATAGTGGG 59.582 57.143 0.00 0.00 0.00 4.61
1951 1989 1.202698 GCCTAAGGCTGGTCATAGTGG 60.203 57.143 0.00 0.00 46.69 4.00
1952 1990 2.246719 GCCTAAGGCTGGTCATAGTG 57.753 55.000 0.00 0.00 46.69 2.74
1964 2002 4.747810 CTGCAATAGTTTTTGGCCTAAGG 58.252 43.478 3.32 0.00 0.00 2.69
2007 2047 2.761208 GGGATCACCTATGACCTATCCG 59.239 54.545 0.00 0.00 37.79 4.18
2028 2068 2.171237 TGCTCAGTTGTGGATGGATAGG 59.829 50.000 0.00 0.00 0.00 2.57
2073 2116 8.945195 ATGTAATCATTGGTTACATCCATCAT 57.055 30.769 23.54 6.72 45.00 2.45
2110 2153 1.202348 GTGCCCTTTGTATGCTGAACC 59.798 52.381 0.00 0.00 0.00 3.62
2115 2158 1.820519 CATGTGTGCCCTTTGTATGCT 59.179 47.619 0.00 0.00 0.00 3.79
2253 2299 2.373502 AGGAGCTAAAGCAGGAGTTTGT 59.626 45.455 4.54 0.00 45.16 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.