Multiple sequence alignment - TraesCS1A01G150000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G150000 chr1A 100.000 3437 0 0 1 3437 257567439 257564003 0.000000e+00 6348.0
1 TraesCS1A01G150000 chr1B 92.892 1871 82 20 884 2708 297102069 297100204 0.000000e+00 2671.0
2 TraesCS1A01G150000 chr1B 95.580 724 25 2 2715 3437 283913303 283912586 0.000000e+00 1153.0
3 TraesCS1A01G150000 chr1B 80.095 422 63 10 1 420 297102589 297102187 9.330000e-76 294.0
4 TraesCS1A01G150000 chr1B 80.147 136 25 2 146 280 22606877 22607011 2.180000e-17 100.0
5 TraesCS1A01G150000 chr1B 97.297 37 1 0 293 329 270324013 270323977 2.860000e-06 63.9
6 TraesCS1A01G150000 chr2A 96.999 733 21 1 2706 3437 566593998 566594730 0.000000e+00 1230.0
7 TraesCS1A01G150000 chr7B 95.902 732 29 1 2705 3436 145700622 145701352 0.000000e+00 1184.0
8 TraesCS1A01G150000 chr4A 95.652 736 32 0 2702 3437 695927221 695927956 0.000000e+00 1182.0
9 TraesCS1A01G150000 chr2B 96.250 720 20 2 2719 3437 8420616 8421329 0.000000e+00 1173.0
10 TraesCS1A01G150000 chr2B 95.213 188 9 0 430 617 458962289 458962476 7.210000e-77 298.0
11 TraesCS1A01G150000 chr2B 94.681 188 10 0 430 617 70184443 70184256 3.350000e-75 292.0
12 TraesCS1A01G150000 chr5B 95.380 736 28 5 2704 3437 102595639 102596370 0.000000e+00 1166.0
13 TraesCS1A01G150000 chr5B 76.892 489 71 29 1199 1653 8934878 8934398 4.430000e-59 239.0
14 TraesCS1A01G150000 chr3B 95.238 735 27 3 2704 3437 223525697 223524970 0.000000e+00 1157.0
15 TraesCS1A01G150000 chr3A 95.219 732 27 3 2706 3437 721576506 721575783 0.000000e+00 1151.0
16 TraesCS1A01G150000 chr7A 94.959 734 35 2 2705 3437 731672361 731671629 0.000000e+00 1149.0
17 TraesCS1A01G150000 chr7A 94.180 189 11 0 431 619 545324523 545324335 4.340000e-74 289.0
18 TraesCS1A01G150000 chr1D 92.759 580 26 7 2139 2708 203294139 203293566 0.000000e+00 824.0
19 TraesCS1A01G150000 chr1D 87.688 731 25 22 987 1683 203311538 203310839 0.000000e+00 791.0
20 TraesCS1A01G150000 chr1D 88.018 434 40 5 1 430 203313766 203313341 1.420000e-138 503.0
21 TraesCS1A01G150000 chr1D 88.372 172 9 1 831 1002 203313230 203313070 2.710000e-46 196.0
22 TraesCS1A01G150000 chr1D 80.916 131 25 0 151 281 80965614 80965744 1.690000e-18 104.0
23 TraesCS1A01G150000 chr7D 92.929 198 13 1 429 626 412100509 412100705 1.560000e-73 287.0
24 TraesCS1A01G150000 chr7D 92.929 198 13 1 426 622 433896374 433896571 1.560000e-73 287.0
25 TraesCS1A01G150000 chr7D 92.821 195 14 0 428 622 617058718 617058524 2.020000e-72 283.0
26 TraesCS1A01G150000 chr7D 76.216 185 39 4 146 329 385433632 385433452 3.650000e-15 93.5
27 TraesCS1A01G150000 chr5D 93.684 190 12 0 428 617 149772391 149772580 5.610000e-73 285.0
28 TraesCS1A01G150000 chr5D 77.579 504 63 31 1177 1645 8547584 8547096 3.400000e-65 259.0
29 TraesCS1A01G150000 chr5D 80.564 319 38 17 1199 1493 8497041 8496723 1.240000e-54 224.0
30 TraesCS1A01G150000 chr5D 80.882 136 26 0 146 281 377260937 377261072 1.300000e-19 108.0
31 TraesCS1A01G150000 chr3D 92.500 200 14 1 422 620 3542080 3541881 5.610000e-73 285.0
32 TraesCS1A01G150000 chr2D 92.857 196 13 1 429 623 26038728 26038533 2.020000e-72 283.0
33 TraesCS1A01G150000 chr2D 91.960 199 16 0 425 623 549605171 549605369 2.610000e-71 279.0
34 TraesCS1A01G150000 chr2D 81.343 134 25 0 146 279 534162837 534162970 3.630000e-20 110.0
35 TraesCS1A01G150000 chr2D 79.562 137 28 0 145 281 634074279 634074415 7.850000e-17 99.0
36 TraesCS1A01G150000 chr5A 78.631 482 59 31 1199 1645 6725671 6725199 2.610000e-71 279.0
37 TraesCS1A01G150000 chr5A 77.480 373 62 15 1308 1668 6675680 6675318 1.620000e-48 204.0
38 TraesCS1A01G150000 chr6A 85.714 119 17 0 163 281 2206112 2206230 3.600000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G150000 chr1A 257564003 257567439 3436 True 6348.000000 6348 100.0000 1 3437 1 chr1A.!!$R1 3436
1 TraesCS1A01G150000 chr1B 297100204 297102589 2385 True 1482.500000 2671 86.4935 1 2708 2 chr1B.!!$R3 2707
2 TraesCS1A01G150000 chr1B 283912586 283913303 717 True 1153.000000 1153 95.5800 2715 3437 1 chr1B.!!$R2 722
3 TraesCS1A01G150000 chr2A 566593998 566594730 732 False 1230.000000 1230 96.9990 2706 3437 1 chr2A.!!$F1 731
4 TraesCS1A01G150000 chr7B 145700622 145701352 730 False 1184.000000 1184 95.9020 2705 3436 1 chr7B.!!$F1 731
5 TraesCS1A01G150000 chr4A 695927221 695927956 735 False 1182.000000 1182 95.6520 2702 3437 1 chr4A.!!$F1 735
6 TraesCS1A01G150000 chr2B 8420616 8421329 713 False 1173.000000 1173 96.2500 2719 3437 1 chr2B.!!$F1 718
7 TraesCS1A01G150000 chr5B 102595639 102596370 731 False 1166.000000 1166 95.3800 2704 3437 1 chr5B.!!$F1 733
8 TraesCS1A01G150000 chr3B 223524970 223525697 727 True 1157.000000 1157 95.2380 2704 3437 1 chr3B.!!$R1 733
9 TraesCS1A01G150000 chr3A 721575783 721576506 723 True 1151.000000 1151 95.2190 2706 3437 1 chr3A.!!$R1 731
10 TraesCS1A01G150000 chr7A 731671629 731672361 732 True 1149.000000 1149 94.9590 2705 3437 1 chr7A.!!$R2 732
11 TraesCS1A01G150000 chr1D 203293566 203294139 573 True 824.000000 824 92.7590 2139 2708 1 chr1D.!!$R1 569
12 TraesCS1A01G150000 chr1D 203310839 203313766 2927 True 496.666667 791 88.0260 1 1683 3 chr1D.!!$R2 1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 202 0.031449 GTCTAGCATCGTCAGAGGGC 59.969 60.0 0.00 0.0 0.0 5.19 F
450 455 0.039180 GGGGGTGTTTGGTTCTAGGG 59.961 60.0 0.00 0.0 0.0 3.53 F
799 804 0.106149 AACTTCGGAAGCGGAGTTGT 59.894 50.0 17.37 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 3461 0.827368 TGGTCAACCCCACAAAAAGC 59.173 50.000 0.00 0.0 34.29 3.51 R
1891 3497 2.490509 CTGAGGCATGTGCAAGATTTGA 59.509 45.455 7.36 0.0 44.36 2.69 R
2644 4280 2.124560 AAGATATAGCCCAGGCAGGT 57.875 50.000 12.03 0.0 44.88 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.682334 TGTCGCCGGTCTACCCCA 62.682 66.667 1.90 0.00 0.00 4.96
21 22 2.582978 GCCGGTCTACCCCACTTC 59.417 66.667 1.90 0.00 0.00 3.01
64 65 2.890766 GCGAAGGACCTCCAACCCA 61.891 63.158 0.00 0.00 38.89 4.51
71 72 4.096003 CCTCCAACCCATCGCCGT 62.096 66.667 0.00 0.00 0.00 5.68
133 135 0.111639 AATAAGGGTTGTGTGGCGGT 59.888 50.000 0.00 0.00 0.00 5.68
136 138 2.958578 AAGGGTTGTGTGGCGGTGAG 62.959 60.000 0.00 0.00 0.00 3.51
143 145 1.003839 TGTGGCGGTGAGAATGTCC 60.004 57.895 0.00 0.00 0.00 4.02
144 146 1.745489 GTGGCGGTGAGAATGTCCC 60.745 63.158 0.00 0.00 0.00 4.46
145 147 2.220586 TGGCGGTGAGAATGTCCCA 61.221 57.895 0.00 0.00 0.00 4.37
146 148 1.002624 GGCGGTGAGAATGTCCCAA 60.003 57.895 0.00 0.00 0.00 4.12
147 149 0.394352 GGCGGTGAGAATGTCCCAAT 60.394 55.000 0.00 0.00 0.00 3.16
150 152 2.808543 GCGGTGAGAATGTCCCAATATC 59.191 50.000 0.00 0.00 0.00 1.63
160 162 2.169769 TGTCCCAATATCTCCAACGTCC 59.830 50.000 0.00 0.00 0.00 4.79
161 163 2.169769 GTCCCAATATCTCCAACGTCCA 59.830 50.000 0.00 0.00 0.00 4.02
178 180 1.686325 CCAATCCCCGTCTCGATGGT 61.686 60.000 4.58 0.00 35.70 3.55
200 202 0.031449 GTCTAGCATCGTCAGAGGGC 59.969 60.000 0.00 0.00 0.00 5.19
218 220 2.756025 CGTGTGGCGGTGTGTGTTT 61.756 57.895 0.00 0.00 36.85 2.83
241 243 3.797256 GTCGGATCTCGTGAAATTCGATT 59.203 43.478 0.00 0.00 40.32 3.34
249 251 2.159430 CGTGAAATTCGATTGGTGCTGA 59.841 45.455 0.00 0.00 0.00 4.26
255 257 2.315925 TCGATTGGTGCTGATCTTCC 57.684 50.000 0.00 0.00 0.00 3.46
256 258 1.554617 TCGATTGGTGCTGATCTTCCA 59.445 47.619 0.00 0.00 0.00 3.53
281 283 4.836825 GATCTGTTTGGATCCAGTCTTCA 58.163 43.478 15.53 9.78 36.91 3.02
326 328 6.029346 TCCTTTTGATCCATGCTTTTCTTC 57.971 37.500 0.00 0.00 0.00 2.87
336 338 4.635765 CCATGCTTTTCTTCATTAGACGGA 59.364 41.667 0.00 0.00 30.90 4.69
377 379 1.134037 ACAACAGGTTTTGTCCGGCTA 60.134 47.619 0.00 0.00 39.73 3.93
421 426 1.600663 CGGCATATCTTCGACTCGCTT 60.601 52.381 0.00 0.00 0.00 4.68
431 436 7.630470 ATCTTCGACTCGCTTCAATATTTAG 57.370 36.000 0.00 0.00 0.00 1.85
432 437 5.977725 TCTTCGACTCGCTTCAATATTTAGG 59.022 40.000 0.00 0.00 0.00 2.69
433 438 4.617959 TCGACTCGCTTCAATATTTAGGG 58.382 43.478 0.00 5.48 0.00 3.53
434 439 3.741344 CGACTCGCTTCAATATTTAGGGG 59.259 47.826 9.98 1.80 0.00 4.79
435 440 4.065789 GACTCGCTTCAATATTTAGGGGG 58.934 47.826 8.82 8.82 0.00 5.40
436 441 3.458487 ACTCGCTTCAATATTTAGGGGGT 59.542 43.478 9.80 9.80 31.50 4.95
437 442 3.815401 CTCGCTTCAATATTTAGGGGGTG 59.185 47.826 9.98 0.00 0.00 4.61
438 443 3.201266 TCGCTTCAATATTTAGGGGGTGT 59.799 43.478 9.98 0.00 0.00 4.16
439 444 3.951680 CGCTTCAATATTTAGGGGGTGTT 59.048 43.478 0.00 0.00 0.00 3.32
440 445 4.401202 CGCTTCAATATTTAGGGGGTGTTT 59.599 41.667 0.00 0.00 0.00 2.83
441 446 5.660460 GCTTCAATATTTAGGGGGTGTTTG 58.340 41.667 0.00 0.00 0.00 2.93
442 447 5.395214 GCTTCAATATTTAGGGGGTGTTTGG 60.395 44.000 0.00 0.00 0.00 3.28
443 448 5.278127 TCAATATTTAGGGGGTGTTTGGT 57.722 39.130 0.00 0.00 0.00 3.67
444 449 5.656420 TCAATATTTAGGGGGTGTTTGGTT 58.344 37.500 0.00 0.00 0.00 3.67
445 450 5.717654 TCAATATTTAGGGGGTGTTTGGTTC 59.282 40.000 0.00 0.00 0.00 3.62
446 451 3.915346 ATTTAGGGGGTGTTTGGTTCT 57.085 42.857 0.00 0.00 0.00 3.01
447 452 6.661740 ATATTTAGGGGGTGTTTGGTTCTA 57.338 37.500 0.00 0.00 0.00 2.10
448 453 4.376225 TTTAGGGGGTGTTTGGTTCTAG 57.624 45.455 0.00 0.00 0.00 2.43
449 454 1.073098 AGGGGGTGTTTGGTTCTAGG 58.927 55.000 0.00 0.00 0.00 3.02
450 455 0.039180 GGGGGTGTTTGGTTCTAGGG 59.961 60.000 0.00 0.00 0.00 3.53
451 456 1.069775 GGGGTGTTTGGTTCTAGGGA 58.930 55.000 0.00 0.00 0.00 4.20
452 457 1.271762 GGGGTGTTTGGTTCTAGGGAC 60.272 57.143 0.00 0.00 0.00 4.46
453 458 1.703513 GGGTGTTTGGTTCTAGGGACT 59.296 52.381 0.00 0.00 46.37 3.85
454 459 2.107726 GGGTGTTTGGTTCTAGGGACTT 59.892 50.000 0.00 0.00 41.75 3.01
455 460 3.436035 GGGTGTTTGGTTCTAGGGACTTT 60.436 47.826 0.00 0.00 41.75 2.66
456 461 4.212716 GGTGTTTGGTTCTAGGGACTTTT 58.787 43.478 0.00 0.00 41.75 2.27
457 462 4.647853 GGTGTTTGGTTCTAGGGACTTTTT 59.352 41.667 0.00 0.00 41.75 1.94
478 483 6.844097 TTTTGTGTTGGGACTAGAAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
479 484 6.445357 TTTGTGTTGGGACTAGAAAAAGTC 57.555 37.500 0.00 0.00 44.31 3.01
489 494 6.483385 GACTAGAAAAAGTCCCTAGCAAAC 57.517 41.667 0.00 0.00 40.06 2.93
490 495 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
491 496 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
492 497 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
493 498 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
494 499 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
495 500 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
496 501 3.525800 AGTCCCTAGCAAACCAAACAT 57.474 42.857 0.00 0.00 0.00 2.71
497 502 3.157087 AGTCCCTAGCAAACCAAACATG 58.843 45.455 0.00 0.00 0.00 3.21
498 503 2.231235 GTCCCTAGCAAACCAAACATGG 59.769 50.000 0.00 0.00 0.00 3.66
499 504 2.158385 TCCCTAGCAAACCAAACATGGT 60.158 45.455 0.00 0.00 45.55 3.55
500 505 2.029110 CCCTAGCAAACCAAACATGGTG 60.029 50.000 0.47 0.00 42.20 4.17
501 506 2.029110 CCTAGCAAACCAAACATGGTGG 60.029 50.000 14.45 14.45 42.20 4.61
502 507 0.758123 AGCAAACCAAACATGGTGGG 59.242 50.000 18.83 12.47 42.20 4.61
503 508 0.755686 GCAAACCAAACATGGTGGGA 59.244 50.000 12.48 0.00 42.20 4.37
504 509 1.540146 GCAAACCAAACATGGTGGGAC 60.540 52.381 12.48 0.00 42.20 4.46
505 510 2.038659 CAAACCAAACATGGTGGGACT 58.961 47.619 12.48 0.00 42.20 3.85
506 511 2.433970 CAAACCAAACATGGTGGGACTT 59.566 45.455 12.48 0.30 42.20 3.01
507 512 2.470057 ACCAAACATGGTGGGACTTT 57.530 45.000 12.48 0.00 41.33 2.66
508 513 2.758130 ACCAAACATGGTGGGACTTTT 58.242 42.857 12.48 0.00 41.33 2.27
509 514 3.111484 ACCAAACATGGTGGGACTTTTT 58.889 40.909 12.48 0.00 41.33 1.94
540 545 8.856490 CTTTTTGCTAAAAGTCTTTAGAAGCA 57.144 30.769 20.79 18.74 44.70 3.91
541 546 8.628882 TTTTTGCTAAAAGTCTTTAGAAGCAC 57.371 30.769 20.88 2.24 44.70 4.40
542 547 5.941948 TGCTAAAAGTCTTTAGAAGCACC 57.058 39.130 18.74 1.33 44.70 5.01
543 548 5.621193 TGCTAAAAGTCTTTAGAAGCACCT 58.379 37.500 18.74 0.00 44.70 4.00
544 549 5.701290 TGCTAAAAGTCTTTAGAAGCACCTC 59.299 40.000 18.74 0.83 44.70 3.85
545 550 5.122554 GCTAAAAGTCTTTAGAAGCACCTCC 59.877 44.000 16.55 0.00 44.70 4.30
546 551 4.984146 AAAGTCTTTAGAAGCACCTCCT 57.016 40.909 0.00 0.00 0.00 3.69
547 552 4.984146 AAGTCTTTAGAAGCACCTCCTT 57.016 40.909 0.00 0.00 0.00 3.36
548 553 4.278975 AGTCTTTAGAAGCACCTCCTTG 57.721 45.455 0.00 0.00 0.00 3.61
549 554 3.904339 AGTCTTTAGAAGCACCTCCTTGA 59.096 43.478 0.00 0.00 0.00 3.02
550 555 4.020662 AGTCTTTAGAAGCACCTCCTTGAG 60.021 45.833 0.00 0.00 0.00 3.02
551 556 4.021016 GTCTTTAGAAGCACCTCCTTGAGA 60.021 45.833 0.00 0.00 0.00 3.27
552 557 4.221703 TCTTTAGAAGCACCTCCTTGAGAG 59.778 45.833 0.00 0.00 42.83 3.20
553 558 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
554 559 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
555 560 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
556 561 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
557 562 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
558 563 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
559 564 3.070748 GCACCTCCTTGAGAGTCTTTTC 58.929 50.000 0.00 0.00 41.47 2.29
560 565 3.669536 CACCTCCTTGAGAGTCTTTTCC 58.330 50.000 0.00 0.00 41.47 3.13
561 566 3.071602 CACCTCCTTGAGAGTCTTTTCCA 59.928 47.826 0.00 0.00 41.47 3.53
562 567 3.716872 ACCTCCTTGAGAGTCTTTTCCAA 59.283 43.478 0.00 0.00 41.47 3.53
563 568 4.166144 ACCTCCTTGAGAGTCTTTTCCAAA 59.834 41.667 0.00 0.00 41.47 3.28
564 569 5.133221 CCTCCTTGAGAGTCTTTTCCAAAA 58.867 41.667 0.00 0.00 41.47 2.44
565 570 5.594317 CCTCCTTGAGAGTCTTTTCCAAAAA 59.406 40.000 0.00 0.00 41.47 1.94
566 571 6.238869 CCTCCTTGAGAGTCTTTTCCAAAAAG 60.239 42.308 5.94 5.94 41.47 2.27
567 572 6.187682 TCCTTGAGAGTCTTTTCCAAAAAGT 58.812 36.000 10.91 0.00 0.00 2.66
568 573 6.318900 TCCTTGAGAGTCTTTTCCAAAAAGTC 59.681 38.462 10.91 6.67 0.00 3.01
569 574 6.319911 CCTTGAGAGTCTTTTCCAAAAAGTCT 59.680 38.462 10.33 10.33 0.00 3.24
570 575 6.927294 TGAGAGTCTTTTCCAAAAAGTCTC 57.073 37.500 21.36 21.36 40.35 3.36
571 576 6.414732 TGAGAGTCTTTTCCAAAAAGTCTCA 58.585 36.000 26.22 23.31 41.54 3.27
572 577 6.540189 TGAGAGTCTTTTCCAAAAAGTCTCAG 59.460 38.462 26.22 2.69 41.54 3.35
573 578 5.825151 AGAGTCTTTTCCAAAAAGTCTCAGG 59.175 40.000 26.22 2.36 41.54 3.86
574 579 5.755849 AGTCTTTTCCAAAAAGTCTCAGGA 58.244 37.500 10.91 0.00 0.00 3.86
575 580 6.187682 AGTCTTTTCCAAAAAGTCTCAGGAA 58.812 36.000 10.91 0.00 36.63 3.36
576 581 6.095580 AGTCTTTTCCAAAAAGTCTCAGGAAC 59.904 38.462 10.91 1.77 38.03 3.62
577 582 6.095580 GTCTTTTCCAAAAAGTCTCAGGAACT 59.904 38.462 10.91 0.00 38.03 3.01
578 583 7.282450 GTCTTTTCCAAAAAGTCTCAGGAACTA 59.718 37.037 10.91 0.00 38.03 2.24
579 584 7.499232 TCTTTTCCAAAAAGTCTCAGGAACTAG 59.501 37.037 10.91 0.00 38.03 2.57
580 585 6.494666 TTCCAAAAAGTCTCAGGAACTAGA 57.505 37.500 0.00 0.00 36.02 2.43
581 586 6.494666 TCCAAAAAGTCTCAGGAACTAGAA 57.505 37.500 0.00 0.00 36.02 2.10
582 587 6.895782 TCCAAAAAGTCTCAGGAACTAGAAA 58.104 36.000 0.00 0.00 36.02 2.52
583 588 7.343357 TCCAAAAAGTCTCAGGAACTAGAAAA 58.657 34.615 0.00 0.00 36.02 2.29
584 589 7.832187 TCCAAAAAGTCTCAGGAACTAGAAAAA 59.168 33.333 0.00 0.00 36.02 1.94
585 590 8.131731 CCAAAAAGTCTCAGGAACTAGAAAAAG 58.868 37.037 0.00 0.00 36.02 2.27
586 591 8.678199 CAAAAAGTCTCAGGAACTAGAAAAAGT 58.322 33.333 0.00 0.00 36.02 2.66
587 592 9.901172 AAAAAGTCTCAGGAACTAGAAAAAGTA 57.099 29.630 0.00 0.00 36.02 2.24
588 593 8.890124 AAAGTCTCAGGAACTAGAAAAAGTAC 57.110 34.615 0.00 0.00 36.02 2.73
589 594 7.842887 AGTCTCAGGAACTAGAAAAAGTACT 57.157 36.000 0.00 0.00 36.02 2.73
590 595 8.937207 AGTCTCAGGAACTAGAAAAAGTACTA 57.063 34.615 0.00 0.00 36.02 1.82
591 596 9.016438 AGTCTCAGGAACTAGAAAAAGTACTAG 57.984 37.037 0.00 0.00 41.01 2.57
592 597 7.756272 GTCTCAGGAACTAGAAAAAGTACTAGC 59.244 40.741 0.00 0.00 39.47 3.42
593 598 7.450634 TCTCAGGAACTAGAAAAAGTACTAGCA 59.549 37.037 0.00 0.00 39.47 3.49
594 599 7.376615 TCAGGAACTAGAAAAAGTACTAGCAC 58.623 38.462 0.00 0.00 39.47 4.40
595 600 7.232941 TCAGGAACTAGAAAAAGTACTAGCACT 59.767 37.037 0.00 0.00 39.47 4.40
596 601 8.521176 CAGGAACTAGAAAAAGTACTAGCACTA 58.479 37.037 0.00 0.00 39.47 2.74
597 602 8.741841 AGGAACTAGAAAAAGTACTAGCACTAG 58.258 37.037 17.57 17.57 39.47 2.57
598 603 8.738106 GGAACTAGAAAAAGTACTAGCACTAGA 58.262 37.037 22.22 0.00 39.47 2.43
599 604 9.777575 GAACTAGAAAAAGTACTAGCACTAGAG 57.222 37.037 22.22 0.00 39.47 2.43
600 605 9.517868 AACTAGAAAAAGTACTAGCACTAGAGA 57.482 33.333 22.22 0.00 39.47 3.10
601 606 9.517868 ACTAGAAAAAGTACTAGCACTAGAGAA 57.482 33.333 22.22 0.00 39.47 2.87
602 607 9.777575 CTAGAAAAAGTACTAGCACTAGAGAAC 57.222 37.037 11.59 6.59 36.97 3.01
603 608 7.604549 AGAAAAAGTACTAGCACTAGAGAACC 58.395 38.462 11.59 0.00 36.97 3.62
604 609 6.912951 AAAAGTACTAGCACTAGAGAACCA 57.087 37.500 11.59 0.00 36.97 3.67
605 610 6.912951 AAAGTACTAGCACTAGAGAACCAA 57.087 37.500 11.59 0.00 36.97 3.67
606 611 6.912951 AAGTACTAGCACTAGAGAACCAAA 57.087 37.500 11.59 0.00 36.97 3.28
607 612 6.270156 AGTACTAGCACTAGAGAACCAAAC 57.730 41.667 11.59 0.00 36.97 2.93
608 613 5.773680 AGTACTAGCACTAGAGAACCAAACA 59.226 40.000 11.59 0.00 36.97 2.83
609 614 4.884247 ACTAGCACTAGAGAACCAAACAC 58.116 43.478 11.59 0.00 36.97 3.32
610 615 3.127425 AGCACTAGAGAACCAAACACC 57.873 47.619 0.00 0.00 0.00 4.16
611 616 2.438021 AGCACTAGAGAACCAAACACCA 59.562 45.455 0.00 0.00 0.00 4.17
612 617 2.548480 GCACTAGAGAACCAAACACCAC 59.452 50.000 0.00 0.00 0.00 4.16
613 618 3.139077 CACTAGAGAACCAAACACCACC 58.861 50.000 0.00 0.00 0.00 4.61
614 619 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
628 633 4.673968 ACACCACCTTAGTCATCACTAGA 58.326 43.478 0.00 0.00 36.43 2.43
641 646 5.465532 CATCACTAGATGGTCTATGCACT 57.534 43.478 0.00 0.00 46.33 4.40
644 649 4.711846 TCACTAGATGGTCTATGCACTTGT 59.288 41.667 0.00 0.00 0.00 3.16
646 651 6.551227 TCACTAGATGGTCTATGCACTTGTAT 59.449 38.462 0.00 0.00 0.00 2.29
695 700 8.426569 TTTACTGTACAACTATAAGGACCTGT 57.573 34.615 0.00 0.00 0.00 4.00
696 701 6.930068 ACTGTACAACTATAAGGACCTGTT 57.070 37.500 0.00 0.00 0.00 3.16
697 702 6.932947 ACTGTACAACTATAAGGACCTGTTC 58.067 40.000 0.00 0.00 0.00 3.18
700 705 4.091549 ACAACTATAAGGACCTGTTCGGA 58.908 43.478 0.00 0.00 36.31 4.55
704 709 5.915175 ACTATAAGGACCTGTTCGGAATTC 58.085 41.667 0.00 0.00 36.31 2.17
705 710 2.491675 AAGGACCTGTTCGGAATTCC 57.508 50.000 15.01 15.01 36.31 3.01
707 712 1.003233 AGGACCTGTTCGGAATTCCAC 59.997 52.381 24.09 15.59 36.31 4.02
709 714 0.768622 ACCTGTTCGGAATTCCACCA 59.231 50.000 24.09 14.84 36.31 4.17
711 716 1.539827 CCTGTTCGGAATTCCACCAAC 59.460 52.381 24.09 20.57 35.14 3.77
712 717 2.504367 CTGTTCGGAATTCCACCAACT 58.496 47.619 24.09 0.00 35.14 3.16
714 719 1.810755 GTTCGGAATTCCACCAACTCC 59.189 52.381 24.09 0.00 35.14 3.85
717 722 1.544537 CGGAATTCCACCAACTCCACA 60.545 52.381 24.09 0.00 35.14 4.17
718 723 2.593026 GGAATTCCACCAACTCCACAA 58.407 47.619 20.04 0.00 35.64 3.33
719 724 2.962421 GGAATTCCACCAACTCCACAAA 59.038 45.455 20.04 0.00 35.64 2.83
720 725 3.386402 GGAATTCCACCAACTCCACAAAA 59.614 43.478 20.04 0.00 35.64 2.44
721 726 4.040339 GGAATTCCACCAACTCCACAAAAT 59.960 41.667 20.04 0.00 35.64 1.82
722 727 5.454613 GGAATTCCACCAACTCCACAAAATT 60.455 40.000 20.04 0.00 35.64 1.82
723 728 4.664150 TTCCACCAACTCCACAAAATTC 57.336 40.909 0.00 0.00 0.00 2.17
724 729 3.909732 TCCACCAACTCCACAAAATTCT 58.090 40.909 0.00 0.00 0.00 2.40
725 730 5.055265 TCCACCAACTCCACAAAATTCTA 57.945 39.130 0.00 0.00 0.00 2.10
726 731 5.070001 TCCACCAACTCCACAAAATTCTAG 58.930 41.667 0.00 0.00 0.00 2.43
727 732 5.070001 CCACCAACTCCACAAAATTCTAGA 58.930 41.667 0.00 0.00 0.00 2.43
728 733 5.534654 CCACCAACTCCACAAAATTCTAGAA 59.465 40.000 7.82 7.82 0.00 2.10
729 734 6.294176 CCACCAACTCCACAAAATTCTAGAAG 60.294 42.308 11.53 0.00 0.00 2.85
730 735 5.241728 ACCAACTCCACAAAATTCTAGAAGC 59.758 40.000 11.53 0.00 0.00 3.86
731 736 5.474876 CCAACTCCACAAAATTCTAGAAGCT 59.525 40.000 11.53 0.00 0.00 3.74
732 737 6.376978 CAACTCCACAAAATTCTAGAAGCTG 58.623 40.000 11.53 9.93 0.00 4.24
733 738 4.457257 ACTCCACAAAATTCTAGAAGCTGC 59.543 41.667 11.53 0.00 0.00 5.25
734 739 3.436704 TCCACAAAATTCTAGAAGCTGCG 59.563 43.478 11.53 2.46 0.00 5.18
735 740 3.426695 CCACAAAATTCTAGAAGCTGCGG 60.427 47.826 11.53 7.45 0.00 5.69
736 741 3.436704 CACAAAATTCTAGAAGCTGCGGA 59.563 43.478 11.53 0.00 0.00 5.54
737 742 3.686726 ACAAAATTCTAGAAGCTGCGGAG 59.313 43.478 11.53 0.00 0.00 4.63
738 743 3.618690 AAATTCTAGAAGCTGCGGAGT 57.381 42.857 11.53 0.00 0.00 3.85
739 744 2.880963 ATTCTAGAAGCTGCGGAGTC 57.119 50.000 11.53 0.00 0.00 3.36
740 745 1.545841 TTCTAGAAGCTGCGGAGTCA 58.454 50.000 5.62 0.00 0.00 3.41
741 746 1.098869 TCTAGAAGCTGCGGAGTCAG 58.901 55.000 5.62 0.00 35.40 3.51
742 747 1.098869 CTAGAAGCTGCGGAGTCAGA 58.901 55.000 5.62 0.00 34.49 3.27
743 748 1.474478 CTAGAAGCTGCGGAGTCAGAA 59.526 52.381 5.62 0.00 34.49 3.02
744 749 0.681733 AGAAGCTGCGGAGTCAGAAA 59.318 50.000 5.62 0.00 34.49 2.52
745 750 1.070758 AGAAGCTGCGGAGTCAGAAAA 59.929 47.619 5.62 0.00 34.49 2.29
746 751 2.079925 GAAGCTGCGGAGTCAGAAAAT 58.920 47.619 5.62 0.00 34.49 1.82
747 752 3.055819 AGAAGCTGCGGAGTCAGAAAATA 60.056 43.478 5.62 0.00 34.49 1.40
748 753 2.898705 AGCTGCGGAGTCAGAAAATAG 58.101 47.619 5.62 0.00 34.49 1.73
749 754 1.328986 GCTGCGGAGTCAGAAAATAGC 59.671 52.381 5.62 0.00 34.49 2.97
750 755 2.898705 CTGCGGAGTCAGAAAATAGCT 58.101 47.619 0.00 0.00 34.49 3.32
751 756 2.606725 CTGCGGAGTCAGAAAATAGCTG 59.393 50.000 0.00 0.00 34.49 4.24
752 757 1.328986 GCGGAGTCAGAAAATAGCTGC 59.671 52.381 0.00 0.00 33.45 5.25
753 758 2.898705 CGGAGTCAGAAAATAGCTGCT 58.101 47.619 7.57 7.57 33.45 4.24
754 759 2.863137 CGGAGTCAGAAAATAGCTGCTC 59.137 50.000 4.91 0.00 36.59 4.26
755 760 3.202097 GGAGTCAGAAAATAGCTGCTCC 58.798 50.000 4.91 13.92 43.02 4.70
756 761 3.369892 GGAGTCAGAAAATAGCTGCTCCA 60.370 47.826 4.91 0.00 45.52 3.86
757 762 4.450053 GAGTCAGAAAATAGCTGCTCCAT 58.550 43.478 4.91 0.00 33.95 3.41
758 763 5.453903 GGAGTCAGAAAATAGCTGCTCCATA 60.454 44.000 4.91 0.00 45.52 2.74
759 764 5.994250 AGTCAGAAAATAGCTGCTCCATAA 58.006 37.500 4.91 0.00 33.45 1.90
760 765 6.599445 AGTCAGAAAATAGCTGCTCCATAAT 58.401 36.000 4.91 0.00 33.45 1.28
761 766 7.059156 AGTCAGAAAATAGCTGCTCCATAATT 58.941 34.615 4.91 0.00 33.45 1.40
762 767 7.559170 AGTCAGAAAATAGCTGCTCCATAATTT 59.441 33.333 4.91 3.29 33.45 1.82
763 768 8.193438 GTCAGAAAATAGCTGCTCCATAATTTT 58.807 33.333 15.99 15.99 33.45 1.82
764 769 8.408601 TCAGAAAATAGCTGCTCCATAATTTTC 58.591 33.333 25.63 25.63 40.82 2.29
765 770 8.192774 CAGAAAATAGCTGCTCCATAATTTTCA 58.807 33.333 30.03 6.58 41.99 2.69
766 771 8.752187 AGAAAATAGCTGCTCCATAATTTTCAA 58.248 29.630 30.03 6.41 41.99 2.69
767 772 8.707938 AAAATAGCTGCTCCATAATTTTCAAC 57.292 30.769 4.91 0.00 0.00 3.18
768 773 7.651027 AATAGCTGCTCCATAATTTTCAACT 57.349 32.000 4.91 0.00 0.00 3.16
769 774 8.752005 AATAGCTGCTCCATAATTTTCAACTA 57.248 30.769 4.91 0.00 0.00 2.24
770 775 8.930846 ATAGCTGCTCCATAATTTTCAACTAT 57.069 30.769 4.91 0.00 0.00 2.12
772 777 8.752005 AGCTGCTCCATAATTTTCAACTATAA 57.248 30.769 0.00 0.00 0.00 0.98
773 778 8.624776 AGCTGCTCCATAATTTTCAACTATAAC 58.375 33.333 0.00 0.00 0.00 1.89
774 779 8.624776 GCTGCTCCATAATTTTCAACTATAACT 58.375 33.333 0.00 0.00 0.00 2.24
787 792 7.827819 TCAACTATAACTTCATCAACTTCGG 57.172 36.000 0.00 0.00 0.00 4.30
788 793 7.608153 TCAACTATAACTTCATCAACTTCGGA 58.392 34.615 0.00 0.00 0.00 4.55
789 794 8.092068 TCAACTATAACTTCATCAACTTCGGAA 58.908 33.333 0.00 0.00 0.00 4.30
790 795 8.383619 CAACTATAACTTCATCAACTTCGGAAG 58.616 37.037 15.96 15.96 41.83 3.46
791 796 5.803020 ATAACTTCATCAACTTCGGAAGC 57.197 39.130 17.37 0.00 40.21 3.86
792 797 2.069273 ACTTCATCAACTTCGGAAGCG 58.931 47.619 17.37 9.26 40.21 4.68
793 798 1.394917 CTTCATCAACTTCGGAAGCGG 59.605 52.381 17.37 9.88 31.44 5.52
794 799 0.606096 TCATCAACTTCGGAAGCGGA 59.394 50.000 17.37 14.62 0.00 5.54
795 800 1.002366 CATCAACTTCGGAAGCGGAG 58.998 55.000 17.37 5.49 0.00 4.63
796 801 0.608640 ATCAACTTCGGAAGCGGAGT 59.391 50.000 17.37 0.00 0.00 3.85
797 802 0.391597 TCAACTTCGGAAGCGGAGTT 59.608 50.000 17.37 0.41 0.00 3.01
798 803 0.512952 CAACTTCGGAAGCGGAGTTG 59.487 55.000 17.37 10.00 0.00 3.16
799 804 0.106149 AACTTCGGAAGCGGAGTTGT 59.894 50.000 17.37 0.00 0.00 3.32
800 805 0.600255 ACTTCGGAAGCGGAGTTGTG 60.600 55.000 17.37 0.00 0.00 3.33
801 806 1.291877 CTTCGGAAGCGGAGTTGTGG 61.292 60.000 4.57 0.00 0.00 4.17
802 807 1.750341 TTCGGAAGCGGAGTTGTGGA 61.750 55.000 0.00 0.00 0.00 4.02
803 808 1.738099 CGGAAGCGGAGTTGTGGAG 60.738 63.158 0.00 0.00 0.00 3.86
804 809 1.371558 GGAAGCGGAGTTGTGGAGT 59.628 57.895 0.00 0.00 0.00 3.85
805 810 0.951040 GGAAGCGGAGTTGTGGAGTG 60.951 60.000 0.00 0.00 0.00 3.51
806 811 0.951040 GAAGCGGAGTTGTGGAGTGG 60.951 60.000 0.00 0.00 0.00 4.00
807 812 1.407656 AAGCGGAGTTGTGGAGTGGA 61.408 55.000 0.00 0.00 0.00 4.02
808 813 1.374758 GCGGAGTTGTGGAGTGGAG 60.375 63.158 0.00 0.00 0.00 3.86
809 814 1.816863 GCGGAGTTGTGGAGTGGAGA 61.817 60.000 0.00 0.00 0.00 3.71
810 815 0.898320 CGGAGTTGTGGAGTGGAGAT 59.102 55.000 0.00 0.00 0.00 2.75
811 816 1.404717 CGGAGTTGTGGAGTGGAGATG 60.405 57.143 0.00 0.00 0.00 2.90
812 817 1.677217 GGAGTTGTGGAGTGGAGATGC 60.677 57.143 0.00 0.00 0.00 3.91
813 818 1.277557 GAGTTGTGGAGTGGAGATGCT 59.722 52.381 0.00 0.00 0.00 3.79
814 819 1.277557 AGTTGTGGAGTGGAGATGCTC 59.722 52.381 0.00 0.00 0.00 4.26
815 820 1.277557 GTTGTGGAGTGGAGATGCTCT 59.722 52.381 0.00 0.00 32.67 4.09
816 821 2.497675 GTTGTGGAGTGGAGATGCTCTA 59.502 50.000 0.00 0.00 32.67 2.43
817 822 2.820178 TGTGGAGTGGAGATGCTCTAA 58.180 47.619 0.00 0.00 32.67 2.10
818 823 3.173151 TGTGGAGTGGAGATGCTCTAAA 58.827 45.455 0.00 0.00 32.67 1.85
819 824 3.055819 TGTGGAGTGGAGATGCTCTAAAC 60.056 47.826 0.00 0.00 32.67 2.01
820 825 3.055819 GTGGAGTGGAGATGCTCTAAACA 60.056 47.826 0.00 0.00 32.67 2.83
821 826 3.196469 TGGAGTGGAGATGCTCTAAACAG 59.804 47.826 0.00 0.00 32.67 3.16
822 827 3.431486 GGAGTGGAGATGCTCTAAACAGG 60.431 52.174 0.00 0.00 32.67 4.00
823 828 2.503356 AGTGGAGATGCTCTAAACAGGG 59.497 50.000 0.00 0.00 0.00 4.45
824 829 2.501723 GTGGAGATGCTCTAAACAGGGA 59.498 50.000 0.00 0.00 0.00 4.20
825 830 3.055094 GTGGAGATGCTCTAAACAGGGAA 60.055 47.826 0.00 0.00 0.00 3.97
829 834 3.137360 AGATGCTCTAAACAGGGAATCCC 59.863 47.826 11.16 11.16 45.90 3.85
841 846 3.850122 GGGAATCCCAAAAAGAAGACG 57.150 47.619 14.67 0.00 44.65 4.18
853 858 0.108756 AGAAGACGCGAAGGTAAGCC 60.109 55.000 15.93 0.00 0.00 4.35
872 877 2.132762 CCTCACGTTACACAAGACCAC 58.867 52.381 0.00 0.00 0.00 4.16
928 933 1.139734 CATCCTGGTCACGGACTCG 59.860 63.158 0.00 0.00 43.02 4.18
993 2545 2.852449 ACCCTAGCATTTCCATCTCCAA 59.148 45.455 0.00 0.00 0.00 3.53
1003 2555 3.678056 TCCATCTCCAATACCGTATGC 57.322 47.619 0.00 0.00 0.00 3.14
1028 2590 8.648693 GCTAGGTGAATTATCCTTCCTAACTTA 58.351 37.037 6.27 0.00 35.51 2.24
1067 2631 9.473007 TTCTAGTAGTACTACTGTCTCAGTCTA 57.527 37.037 35.52 16.98 41.21 2.59
1192 2756 5.470047 TCTTGTCTTCACTTTCCTCCTAC 57.530 43.478 0.00 0.00 0.00 3.18
1271 2841 2.721167 TAAGCGGGCACGAGCATCT 61.721 57.895 15.48 0.00 44.60 2.90
1421 3005 2.126071 TCTGCACCTACGCGCTTC 60.126 61.111 5.73 0.00 33.35 3.86
1508 3106 3.416414 AGGTAGGTACTATGGCTGGTT 57.584 47.619 0.00 0.00 45.60 3.67
1516 3114 2.275466 ACTATGGCTGGTTACCCTTGT 58.725 47.619 0.00 0.00 0.00 3.16
1517 3115 2.647802 ACTATGGCTGGTTACCCTTGTT 59.352 45.455 0.00 0.00 0.00 2.83
1518 3116 3.847780 ACTATGGCTGGTTACCCTTGTTA 59.152 43.478 0.00 0.00 0.00 2.41
1522 3120 3.117436 TGGCTGGTTACCCTTGTTAGTTT 60.117 43.478 0.00 0.00 0.00 2.66
1555 3153 2.682155 TTGGTGCCACCTTTTGTTTC 57.318 45.000 16.23 0.00 39.58 2.78
1638 3236 3.788227 ACTATGGTTCAGAACTGCCAA 57.212 42.857 13.13 0.00 34.39 4.52
1647 3245 7.118723 TGGTTCAGAACTGCCAATAGATAATT 58.881 34.615 13.13 0.00 0.00 1.40
1697 3296 8.147244 ACAGTAAGACATAAGTTAATCCAGGT 57.853 34.615 0.00 0.00 0.00 4.00
1698 3297 8.603304 ACAGTAAGACATAAGTTAATCCAGGTT 58.397 33.333 0.00 0.00 0.00 3.50
1711 3310 1.909302 TCCAGGTTCTCTCCATTCCAC 59.091 52.381 0.00 0.00 0.00 4.02
1718 3317 1.556911 TCTCTCCATTCCACAGCTTCC 59.443 52.381 0.00 0.00 0.00 3.46
1744 3350 5.888724 TGTGTGTCCATAACTTCTTTTTCCA 59.111 36.000 0.00 0.00 0.00 3.53
1790 3396 4.256920 GTCCATCACTGCATCAACTAAGT 58.743 43.478 0.00 0.00 0.00 2.24
1794 3400 4.535526 TCACTGCATCAACTAAGTAGCA 57.464 40.909 0.00 0.00 0.00 3.49
1796 3402 5.491070 TCACTGCATCAACTAAGTAGCAAT 58.509 37.500 0.00 0.00 0.00 3.56
1819 3425 5.440234 TTTGGCTACGCAATTAACAAGAA 57.560 34.783 0.00 0.00 0.00 2.52
1839 3445 1.203052 AGCATGCCGTTTTCTTGATGG 59.797 47.619 15.66 0.00 0.00 3.51
1855 3461 3.667360 TGATGGGATGCGATTCATACAG 58.333 45.455 0.00 0.00 37.78 2.74
1872 3478 1.480545 ACAGCTTTTTGTGGGGTTGAC 59.519 47.619 0.00 0.00 0.00 3.18
1875 3481 1.208293 GCTTTTTGTGGGGTTGACCAA 59.792 47.619 2.12 0.00 43.34 3.67
1944 3550 8.103305 ACTGAAACAGTATATTCTGGTCATTGT 58.897 33.333 13.24 8.51 43.46 2.71
1996 3622 3.796504 GCCACCTTCAACACTCAAACATG 60.797 47.826 0.00 0.00 0.00 3.21
2039 3665 8.839310 AACTTCTATGATGCACTGGATTATAC 57.161 34.615 0.00 0.00 0.00 1.47
2056 3682 8.490311 TGGATTATACATCTTATGTGACACCAA 58.510 33.333 2.45 0.00 44.60 3.67
2064 3690 9.466497 ACATCTTATGTGACACCAAAATTATCT 57.534 29.630 2.45 0.00 43.01 1.98
2071 3697 6.206634 TGTGACACCAAAATTATCTCTTGGAC 59.793 38.462 11.88 1.91 41.88 4.02
2132 3758 6.829229 TCTCTTCTACAAGACCGTGATAAA 57.171 37.500 0.00 0.00 34.71 1.40
2137 3763 7.699391 TCTTCTACAAGACCGTGATAAATAACG 59.301 37.037 0.00 0.00 35.29 3.18
2157 3783 8.718102 ATAACGTCTATTTGCTAATGTTCACT 57.282 30.769 3.49 0.00 0.00 3.41
2164 3790 8.049117 TCTATTTGCTAATGTTCACTCTTCCAT 58.951 33.333 3.49 0.00 0.00 3.41
2519 4146 6.180771 CTTCTGAAAGGAGAAGAGAAATGC 57.819 41.667 4.57 0.00 44.80 3.56
2544 4171 7.129457 TGTCATGCTAGAGTTATCTTTGGAT 57.871 36.000 0.00 0.00 36.96 3.41
2570 4197 3.593096 TCAGCTCTGCTAATTGACACAG 58.407 45.455 0.00 0.00 36.40 3.66
2576 4203 1.808343 TGCTAATTGACACAGCAGCTG 59.192 47.619 21.54 21.54 40.26 4.24
2644 4280 4.502604 CGATTATCCTCCTTTTTCCCGCTA 60.503 45.833 0.00 0.00 0.00 4.26
2781 4420 5.009010 CAGATGTGGTAAAGTGCAGAAAAGT 59.991 40.000 0.00 0.00 0.00 2.66
3052 4697 2.587753 CCGGGTCACGCGCAATAT 60.588 61.111 9.11 0.00 42.52 1.28
3210 4855 2.921069 GCGAGAAACGACAGTCTGCTTA 60.921 50.000 0.00 0.00 45.77 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.840722 AAGGACATCGGAAGTGGGGT 60.841 55.000 0.00 0.00 0.00 4.95
17 18 2.632996 TGACTCAAAGGACATCGGAAGT 59.367 45.455 0.00 0.00 0.00 3.01
21 22 2.093500 TCCATGACTCAAAGGACATCGG 60.093 50.000 0.00 0.00 0.00 4.18
71 72 2.847234 AGTTGTGTCCCTCCCGCA 60.847 61.111 0.00 0.00 0.00 5.69
133 135 5.684704 GTTGGAGATATTGGGACATTCTCA 58.315 41.667 0.00 0.00 39.43 3.27
136 138 4.451900 ACGTTGGAGATATTGGGACATTC 58.548 43.478 0.00 0.00 39.30 2.67
143 145 3.815401 GGATTGGACGTTGGAGATATTGG 59.185 47.826 0.00 0.00 0.00 3.16
144 146 3.815401 GGGATTGGACGTTGGAGATATTG 59.185 47.826 0.00 0.00 0.00 1.90
145 147 3.181443 GGGGATTGGACGTTGGAGATATT 60.181 47.826 0.00 0.00 0.00 1.28
146 148 2.372172 GGGGATTGGACGTTGGAGATAT 59.628 50.000 0.00 0.00 0.00 1.63
147 149 1.766496 GGGGATTGGACGTTGGAGATA 59.234 52.381 0.00 0.00 0.00 1.98
150 152 1.449601 CGGGGATTGGACGTTGGAG 60.450 63.158 0.00 0.00 0.00 3.86
160 162 0.530650 CACCATCGAGACGGGGATTG 60.531 60.000 0.00 0.00 0.00 2.67
161 163 1.823295 CACCATCGAGACGGGGATT 59.177 57.895 0.00 0.00 0.00 3.01
200 202 2.756025 AAACACACACCGCCACACG 61.756 57.895 0.00 0.00 43.15 4.49
218 220 2.162809 TCGAATTTCACGAGATCCGACA 59.837 45.455 10.05 0.00 41.76 4.35
241 243 1.288188 TCCATGGAAGATCAGCACCA 58.712 50.000 13.46 0.00 36.83 4.17
249 251 4.868172 TCCAAACAGATCCATGGAAGAT 57.132 40.909 20.67 1.24 38.95 2.40
314 316 5.801350 TCCGTCTAATGAAGAAAAGCATG 57.199 39.130 0.00 0.00 35.47 4.06
326 328 3.123804 GTGCTACACCATCCGTCTAATG 58.876 50.000 0.00 0.00 0.00 1.90
336 338 0.601558 AAGTCGTCGTGCTACACCAT 59.398 50.000 0.00 0.00 0.00 3.55
377 379 1.694169 ATCACCCCTTCCTCGCCAT 60.694 57.895 0.00 0.00 0.00 4.40
421 426 5.278127 ACCAAACACCCCCTAAATATTGA 57.722 39.130 0.00 0.00 0.00 2.57
431 436 0.039180 CCCTAGAACCAAACACCCCC 59.961 60.000 0.00 0.00 0.00 5.40
432 437 1.069775 TCCCTAGAACCAAACACCCC 58.930 55.000 0.00 0.00 0.00 4.95
433 438 1.703513 AGTCCCTAGAACCAAACACCC 59.296 52.381 0.00 0.00 0.00 4.61
434 439 3.503800 AAGTCCCTAGAACCAAACACC 57.496 47.619 0.00 0.00 0.00 4.16
435 440 5.847111 AAAAAGTCCCTAGAACCAAACAC 57.153 39.130 0.00 0.00 0.00 3.32
454 459 7.234661 ACTTTTTCTAGTCCCAACACAAAAA 57.765 32.000 0.00 0.00 0.00 1.94
455 460 6.844097 ACTTTTTCTAGTCCCAACACAAAA 57.156 33.333 0.00 0.00 0.00 2.44
456 461 6.445357 GACTTTTTCTAGTCCCAACACAAA 57.555 37.500 0.00 0.00 38.88 2.83
466 471 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
467 472 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
468 473 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
469 474 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
470 475 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
471 476 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
472 477 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
473 478 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
474 479 3.637769 TGTTTGGTTTGCTAGGGACTTT 58.362 40.909 0.00 0.00 41.75 2.66
475 480 3.306472 TGTTTGGTTTGCTAGGGACTT 57.694 42.857 0.00 0.00 41.75 3.01
476 481 3.157087 CATGTTTGGTTTGCTAGGGACT 58.843 45.455 0.00 0.00 46.37 3.85
477 482 2.231235 CCATGTTTGGTTTGCTAGGGAC 59.769 50.000 0.00 0.00 38.30 4.46
478 483 2.524306 CCATGTTTGGTTTGCTAGGGA 58.476 47.619 0.00 0.00 38.30 4.20
516 521 7.704899 GGTGCTTCTAAAGACTTTTAGCAAAAA 59.295 33.333 22.72 7.71 43.52 1.94
517 522 7.068226 AGGTGCTTCTAAAGACTTTTAGCAAAA 59.932 33.333 22.72 7.95 43.52 2.44
518 523 6.546034 AGGTGCTTCTAAAGACTTTTAGCAAA 59.454 34.615 22.72 8.44 43.52 3.68
519 524 6.062095 AGGTGCTTCTAAAGACTTTTAGCAA 58.938 36.000 22.72 11.82 43.52 3.91
520 525 5.621193 AGGTGCTTCTAAAGACTTTTAGCA 58.379 37.500 19.63 19.63 43.52 3.49
521 526 5.122554 GGAGGTGCTTCTAAAGACTTTTAGC 59.877 44.000 5.61 12.66 43.52 3.09
522 527 6.468543 AGGAGGTGCTTCTAAAGACTTTTAG 58.531 40.000 5.61 3.33 44.64 1.85
523 528 6.435292 AGGAGGTGCTTCTAAAGACTTTTA 57.565 37.500 5.61 0.00 0.00 1.52
524 529 5.311844 AGGAGGTGCTTCTAAAGACTTTT 57.688 39.130 5.61 0.00 0.00 2.27
525 530 4.984146 AGGAGGTGCTTCTAAAGACTTT 57.016 40.909 5.62 5.62 0.00 2.66
526 531 4.348168 TCAAGGAGGTGCTTCTAAAGACTT 59.652 41.667 0.00 0.00 0.00 3.01
527 532 3.904339 TCAAGGAGGTGCTTCTAAAGACT 59.096 43.478 0.00 0.00 0.00 3.24
528 533 4.021016 TCTCAAGGAGGTGCTTCTAAAGAC 60.021 45.833 0.00 0.00 0.00 3.01
529 534 4.160329 TCTCAAGGAGGTGCTTCTAAAGA 58.840 43.478 0.00 0.00 0.00 2.52
530 535 4.020662 ACTCTCAAGGAGGTGCTTCTAAAG 60.021 45.833 0.00 0.00 45.83 1.85
531 536 3.904339 ACTCTCAAGGAGGTGCTTCTAAA 59.096 43.478 0.00 0.00 45.83 1.85
532 537 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
533 538 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
534 539 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
535 540 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
536 541 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
537 542 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
538 543 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
539 544 3.071602 TGGAAAAGACTCTCAAGGAGGTG 59.928 47.826 0.00 0.00 45.83 4.00
540 545 3.318313 TGGAAAAGACTCTCAAGGAGGT 58.682 45.455 0.00 0.00 45.83 3.85
541 546 4.357918 TTGGAAAAGACTCTCAAGGAGG 57.642 45.455 0.00 0.00 45.83 4.30
542 547 6.319911 ACTTTTTGGAAAAGACTCTCAAGGAG 59.680 38.462 17.31 0.00 46.87 3.69
543 548 6.187682 ACTTTTTGGAAAAGACTCTCAAGGA 58.812 36.000 17.31 0.00 0.00 3.36
544 549 6.319911 AGACTTTTTGGAAAAGACTCTCAAGG 59.680 38.462 17.31 0.00 28.91 3.61
545 550 7.066284 TGAGACTTTTTGGAAAAGACTCTCAAG 59.934 37.037 28.18 8.60 43.94 3.02
546 551 6.884295 TGAGACTTTTTGGAAAAGACTCTCAA 59.116 34.615 28.18 16.36 43.94 3.02
547 552 6.414732 TGAGACTTTTTGGAAAAGACTCTCA 58.585 36.000 28.18 24.51 43.94 3.27
548 553 6.017523 CCTGAGACTTTTTGGAAAAGACTCTC 60.018 42.308 28.18 23.12 43.94 3.20
549 554 5.825151 CCTGAGACTTTTTGGAAAAGACTCT 59.175 40.000 28.18 18.62 43.94 3.24
550 555 5.823045 TCCTGAGACTTTTTGGAAAAGACTC 59.177 40.000 24.90 24.90 43.90 3.36
551 556 5.755849 TCCTGAGACTTTTTGGAAAAGACT 58.244 37.500 17.31 15.91 35.58 3.24
552 557 6.095580 AGTTCCTGAGACTTTTTGGAAAAGAC 59.904 38.462 17.31 12.15 38.35 3.01
553 558 6.187682 AGTTCCTGAGACTTTTTGGAAAAGA 58.812 36.000 17.31 0.00 38.35 2.52
554 559 6.456795 AGTTCCTGAGACTTTTTGGAAAAG 57.543 37.500 10.67 10.67 38.35 2.27
555 560 7.343357 TCTAGTTCCTGAGACTTTTTGGAAAA 58.657 34.615 0.00 0.00 38.35 2.29
556 561 6.895782 TCTAGTTCCTGAGACTTTTTGGAAA 58.104 36.000 0.00 0.00 38.35 3.13
557 562 6.494666 TCTAGTTCCTGAGACTTTTTGGAA 57.505 37.500 0.00 0.00 34.81 3.53
558 563 6.494666 TTCTAGTTCCTGAGACTTTTTGGA 57.505 37.500 0.00 0.00 0.00 3.53
559 564 7.568199 TTTTCTAGTTCCTGAGACTTTTTGG 57.432 36.000 0.00 0.00 0.00 3.28
560 565 8.678199 ACTTTTTCTAGTTCCTGAGACTTTTTG 58.322 33.333 0.00 0.00 0.00 2.44
561 566 8.809468 ACTTTTTCTAGTTCCTGAGACTTTTT 57.191 30.769 0.00 0.00 0.00 1.94
562 567 9.327628 GTACTTTTTCTAGTTCCTGAGACTTTT 57.672 33.333 0.00 0.00 0.00 2.27
563 568 8.706521 AGTACTTTTTCTAGTTCCTGAGACTTT 58.293 33.333 0.00 0.00 0.00 2.66
564 569 8.252624 AGTACTTTTTCTAGTTCCTGAGACTT 57.747 34.615 0.00 0.00 0.00 3.01
565 570 7.842887 AGTACTTTTTCTAGTTCCTGAGACT 57.157 36.000 0.00 0.00 0.00 3.24
566 571 7.756272 GCTAGTACTTTTTCTAGTTCCTGAGAC 59.244 40.741 0.00 0.00 36.84 3.36
567 572 7.450634 TGCTAGTACTTTTTCTAGTTCCTGAGA 59.549 37.037 0.00 0.00 36.84 3.27
568 573 7.542824 GTGCTAGTACTTTTTCTAGTTCCTGAG 59.457 40.741 0.00 0.00 36.84 3.35
569 574 7.232941 AGTGCTAGTACTTTTTCTAGTTCCTGA 59.767 37.037 7.78 0.00 36.84 3.86
570 575 7.379750 AGTGCTAGTACTTTTTCTAGTTCCTG 58.620 38.462 7.78 0.00 36.84 3.86
571 576 7.541916 AGTGCTAGTACTTTTTCTAGTTCCT 57.458 36.000 7.78 0.00 36.84 3.36
572 577 8.738106 TCTAGTGCTAGTACTTTTTCTAGTTCC 58.262 37.037 19.04 0.00 36.84 3.62
573 578 9.777575 CTCTAGTGCTAGTACTTTTTCTAGTTC 57.222 37.037 19.04 0.00 36.84 3.01
574 579 9.517868 TCTCTAGTGCTAGTACTTTTTCTAGTT 57.482 33.333 19.04 0.00 36.84 2.24
575 580 9.517868 TTCTCTAGTGCTAGTACTTTTTCTAGT 57.482 33.333 19.04 0.00 36.84 2.57
576 581 9.777575 GTTCTCTAGTGCTAGTACTTTTTCTAG 57.222 37.037 19.04 9.08 37.34 2.43
577 582 8.738106 GGTTCTCTAGTGCTAGTACTTTTTCTA 58.262 37.037 19.04 0.00 34.84 2.10
578 583 7.232941 TGGTTCTCTAGTGCTAGTACTTTTTCT 59.767 37.037 19.04 0.00 34.84 2.52
579 584 7.376615 TGGTTCTCTAGTGCTAGTACTTTTTC 58.623 38.462 19.04 5.63 34.84 2.29
580 585 7.299246 TGGTTCTCTAGTGCTAGTACTTTTT 57.701 36.000 19.04 0.00 34.84 1.94
581 586 6.912951 TGGTTCTCTAGTGCTAGTACTTTT 57.087 37.500 19.04 0.00 34.84 2.27
582 587 6.912951 TTGGTTCTCTAGTGCTAGTACTTT 57.087 37.500 19.04 0.00 34.84 2.66
583 588 6.267014 TGTTTGGTTCTCTAGTGCTAGTACTT 59.733 38.462 19.04 3.71 34.84 2.24
584 589 5.773680 TGTTTGGTTCTCTAGTGCTAGTACT 59.226 40.000 17.94 17.94 34.84 2.73
585 590 5.862860 GTGTTTGGTTCTCTAGTGCTAGTAC 59.137 44.000 2.24 2.24 34.84 2.73
586 591 5.047519 GGTGTTTGGTTCTCTAGTGCTAGTA 60.048 44.000 6.18 0.00 34.84 1.82
587 592 4.262506 GGTGTTTGGTTCTCTAGTGCTAGT 60.263 45.833 6.18 0.00 34.84 2.57
588 593 4.246458 GGTGTTTGGTTCTCTAGTGCTAG 58.754 47.826 0.00 0.00 34.56 3.42
589 594 3.644265 TGGTGTTTGGTTCTCTAGTGCTA 59.356 43.478 0.00 0.00 0.00 3.49
590 595 2.438021 TGGTGTTTGGTTCTCTAGTGCT 59.562 45.455 0.00 0.00 0.00 4.40
591 596 2.548480 GTGGTGTTTGGTTCTCTAGTGC 59.452 50.000 0.00 0.00 0.00 4.40
592 597 3.139077 GGTGGTGTTTGGTTCTCTAGTG 58.861 50.000 0.00 0.00 0.00 2.74
593 598 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
594 599 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
595 600 4.657039 ACTAAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
596 601 3.458487 ACTAAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
597 602 3.813724 GACTAAGGTGGTGTTTGGTTCTC 59.186 47.826 0.00 0.00 0.00 2.87
598 603 3.201266 TGACTAAGGTGGTGTTTGGTTCT 59.799 43.478 0.00 0.00 0.00 3.01
599 604 3.547746 TGACTAAGGTGGTGTTTGGTTC 58.452 45.455 0.00 0.00 0.00 3.62
600 605 3.655615 TGACTAAGGTGGTGTTTGGTT 57.344 42.857 0.00 0.00 0.00 3.67
601 606 3.137544 TGATGACTAAGGTGGTGTTTGGT 59.862 43.478 0.00 0.00 0.00 3.67
602 607 3.502211 GTGATGACTAAGGTGGTGTTTGG 59.498 47.826 0.00 0.00 0.00 3.28
603 608 4.389374 AGTGATGACTAAGGTGGTGTTTG 58.611 43.478 0.00 0.00 0.00 2.93
604 609 4.706842 AGTGATGACTAAGGTGGTGTTT 57.293 40.909 0.00 0.00 0.00 2.83
605 610 5.084519 TCTAGTGATGACTAAGGTGGTGTT 58.915 41.667 0.00 0.00 34.14 3.32
606 611 4.673968 TCTAGTGATGACTAAGGTGGTGT 58.326 43.478 0.00 0.00 34.14 4.16
607 612 5.860941 ATCTAGTGATGACTAAGGTGGTG 57.139 43.478 0.00 0.00 34.14 4.17
674 679 6.034591 CGAACAGGTCCTTATAGTTGTACAG 58.965 44.000 0.00 0.00 0.00 2.74
680 685 5.952347 ATTCCGAACAGGTCCTTATAGTT 57.048 39.130 0.00 0.00 41.99 2.24
684 689 3.521937 TGGAATTCCGAACAGGTCCTTAT 59.478 43.478 19.57 0.00 41.99 1.73
685 690 2.907696 TGGAATTCCGAACAGGTCCTTA 59.092 45.455 19.57 0.00 41.99 2.69
686 691 1.702957 TGGAATTCCGAACAGGTCCTT 59.297 47.619 19.57 0.00 41.99 3.36
688 693 1.450025 GTGGAATTCCGAACAGGTCC 58.550 55.000 19.57 0.00 41.99 4.46
689 694 1.271163 TGGTGGAATTCCGAACAGGTC 60.271 52.381 19.57 1.71 41.99 3.85
690 695 0.768622 TGGTGGAATTCCGAACAGGT 59.231 50.000 19.57 0.00 41.99 4.00
691 696 1.539827 GTTGGTGGAATTCCGAACAGG 59.460 52.381 19.57 0.00 39.43 4.00
692 697 2.484264 GAGTTGGTGGAATTCCGAACAG 59.516 50.000 24.67 0.00 39.43 3.16
693 698 2.500229 GAGTTGGTGGAATTCCGAACA 58.500 47.619 24.67 18.18 39.43 3.18
694 699 1.810755 GGAGTTGGTGGAATTCCGAAC 59.189 52.381 19.57 19.34 39.43 3.95
695 700 1.422024 TGGAGTTGGTGGAATTCCGAA 59.578 47.619 19.57 9.36 42.25 4.30
696 701 1.060729 TGGAGTTGGTGGAATTCCGA 58.939 50.000 19.57 6.28 42.25 4.55
697 702 1.165270 GTGGAGTTGGTGGAATTCCG 58.835 55.000 19.57 0.00 42.25 4.30
700 705 5.366477 AGAATTTTGTGGAGTTGGTGGAATT 59.634 36.000 0.00 0.00 0.00 2.17
704 709 5.070001 TCTAGAATTTTGTGGAGTTGGTGG 58.930 41.667 0.00 0.00 0.00 4.61
705 710 6.633500 TTCTAGAATTTTGTGGAGTTGGTG 57.367 37.500 0.00 0.00 0.00 4.17
707 712 5.474876 AGCTTCTAGAATTTTGTGGAGTTGG 59.525 40.000 5.44 0.00 0.00 3.77
709 714 5.048434 GCAGCTTCTAGAATTTTGTGGAGTT 60.048 40.000 5.44 0.00 0.00 3.01
711 716 4.436584 CGCAGCTTCTAGAATTTTGTGGAG 60.437 45.833 5.44 0.00 0.00 3.86
712 717 3.436704 CGCAGCTTCTAGAATTTTGTGGA 59.563 43.478 5.44 0.00 0.00 4.02
714 719 3.436704 TCCGCAGCTTCTAGAATTTTGTG 59.563 43.478 5.44 10.70 0.00 3.33
717 722 3.935828 GACTCCGCAGCTTCTAGAATTTT 59.064 43.478 5.44 0.00 0.00 1.82
718 723 3.055819 TGACTCCGCAGCTTCTAGAATTT 60.056 43.478 5.44 0.00 0.00 1.82
719 724 2.497675 TGACTCCGCAGCTTCTAGAATT 59.502 45.455 5.44 0.00 0.00 2.17
720 725 2.100584 CTGACTCCGCAGCTTCTAGAAT 59.899 50.000 5.44 0.00 0.00 2.40
721 726 1.474478 CTGACTCCGCAGCTTCTAGAA 59.526 52.381 4.81 4.81 0.00 2.10
722 727 1.098869 CTGACTCCGCAGCTTCTAGA 58.901 55.000 0.00 0.00 0.00 2.43
723 728 1.098869 TCTGACTCCGCAGCTTCTAG 58.901 55.000 0.00 0.00 35.86 2.43
724 729 1.545841 TTCTGACTCCGCAGCTTCTA 58.454 50.000 0.00 0.00 35.86 2.10
725 730 0.681733 TTTCTGACTCCGCAGCTTCT 59.318 50.000 0.00 0.00 35.86 2.85
726 731 1.512926 TTTTCTGACTCCGCAGCTTC 58.487 50.000 0.00 0.00 35.86 3.86
727 732 2.191128 ATTTTCTGACTCCGCAGCTT 57.809 45.000 0.00 0.00 35.86 3.74
728 733 2.898705 CTATTTTCTGACTCCGCAGCT 58.101 47.619 0.00 0.00 35.86 4.24
729 734 1.328986 GCTATTTTCTGACTCCGCAGC 59.671 52.381 0.00 0.00 35.86 5.25
730 735 2.606725 CAGCTATTTTCTGACTCCGCAG 59.393 50.000 0.00 0.00 37.24 5.18
731 736 2.621338 CAGCTATTTTCTGACTCCGCA 58.379 47.619 0.00 0.00 33.54 5.69
732 737 1.328986 GCAGCTATTTTCTGACTCCGC 59.671 52.381 0.00 0.00 33.54 5.54
733 738 2.863137 GAGCAGCTATTTTCTGACTCCG 59.137 50.000 0.00 0.00 33.10 4.63
734 739 3.202097 GGAGCAGCTATTTTCTGACTCC 58.798 50.000 0.00 13.45 42.11 3.85
735 740 3.866651 TGGAGCAGCTATTTTCTGACTC 58.133 45.455 0.00 0.00 35.72 3.36
736 741 3.988976 TGGAGCAGCTATTTTCTGACT 57.011 42.857 0.00 0.00 33.54 3.41
737 742 6.874288 ATTATGGAGCAGCTATTTTCTGAC 57.126 37.500 0.00 0.00 33.54 3.51
738 743 7.886629 AAATTATGGAGCAGCTATTTTCTGA 57.113 32.000 0.00 0.00 33.54 3.27
739 744 8.192774 TGAAAATTATGGAGCAGCTATTTTCTG 58.807 33.333 26.33 0.00 40.22 3.02
740 745 8.297470 TGAAAATTATGGAGCAGCTATTTTCT 57.703 30.769 26.33 6.66 40.22 2.52
741 746 8.811378 GTTGAAAATTATGGAGCAGCTATTTTC 58.189 33.333 22.72 22.72 40.09 2.29
742 747 8.534496 AGTTGAAAATTATGGAGCAGCTATTTT 58.466 29.630 11.15 11.15 0.00 1.82
743 748 8.071177 AGTTGAAAATTATGGAGCAGCTATTT 57.929 30.769 0.00 0.00 0.00 1.40
744 749 7.651027 AGTTGAAAATTATGGAGCAGCTATT 57.349 32.000 0.00 0.00 0.00 1.73
745 750 8.930846 ATAGTTGAAAATTATGGAGCAGCTAT 57.069 30.769 0.00 0.00 26.68 2.97
746 751 9.845740 TTATAGTTGAAAATTATGGAGCAGCTA 57.154 29.630 0.00 0.00 30.87 3.32
747 752 8.624776 GTTATAGTTGAAAATTATGGAGCAGCT 58.375 33.333 0.00 0.00 30.87 4.24
748 753 8.624776 AGTTATAGTTGAAAATTATGGAGCAGC 58.375 33.333 0.00 0.00 30.87 5.25
761 766 8.717821 CCGAAGTTGATGAAGTTATAGTTGAAA 58.282 33.333 0.00 0.00 0.00 2.69
762 767 8.092068 TCCGAAGTTGATGAAGTTATAGTTGAA 58.908 33.333 0.00 0.00 0.00 2.69
763 768 7.608153 TCCGAAGTTGATGAAGTTATAGTTGA 58.392 34.615 0.00 0.00 0.00 3.18
764 769 7.827819 TCCGAAGTTGATGAAGTTATAGTTG 57.172 36.000 0.00 0.00 0.00 3.16
765 770 7.064728 GCTTCCGAAGTTGATGAAGTTATAGTT 59.935 37.037 9.87 0.00 37.21 2.24
766 771 6.535508 GCTTCCGAAGTTGATGAAGTTATAGT 59.464 38.462 9.87 0.00 37.21 2.12
767 772 6.291849 CGCTTCCGAAGTTGATGAAGTTATAG 60.292 42.308 9.87 0.00 37.21 1.31
768 773 5.518847 CGCTTCCGAAGTTGATGAAGTTATA 59.481 40.000 9.87 0.00 37.21 0.98
769 774 4.330074 CGCTTCCGAAGTTGATGAAGTTAT 59.670 41.667 9.87 0.00 37.21 1.89
770 775 3.678072 CGCTTCCGAAGTTGATGAAGTTA 59.322 43.478 9.87 0.00 37.21 2.24
771 776 2.480419 CGCTTCCGAAGTTGATGAAGTT 59.520 45.455 9.87 0.00 37.21 2.66
772 777 2.069273 CGCTTCCGAAGTTGATGAAGT 58.931 47.619 9.87 0.00 37.21 3.01
773 778 1.394917 CCGCTTCCGAAGTTGATGAAG 59.605 52.381 9.87 0.00 37.78 3.02
774 779 1.001520 TCCGCTTCCGAAGTTGATGAA 59.998 47.619 9.87 0.00 36.29 2.57
775 780 0.606096 TCCGCTTCCGAAGTTGATGA 59.394 50.000 9.87 0.00 36.29 2.92
776 781 1.002366 CTCCGCTTCCGAAGTTGATG 58.998 55.000 9.87 0.00 36.29 3.07
777 782 0.608640 ACTCCGCTTCCGAAGTTGAT 59.391 50.000 9.87 0.00 36.29 2.57
778 783 0.391597 AACTCCGCTTCCGAAGTTGA 59.608 50.000 9.87 5.92 36.29 3.18
779 784 0.512952 CAACTCCGCTTCCGAAGTTG 59.487 55.000 9.87 1.12 36.29 3.16
780 785 0.106149 ACAACTCCGCTTCCGAAGTT 59.894 50.000 9.87 0.00 36.29 2.66
781 786 0.600255 CACAACTCCGCTTCCGAAGT 60.600 55.000 9.87 0.00 36.29 3.01
782 787 1.291877 CCACAACTCCGCTTCCGAAG 61.292 60.000 3.56 3.56 36.29 3.79
783 788 1.301401 CCACAACTCCGCTTCCGAA 60.301 57.895 0.00 0.00 36.29 4.30
784 789 2.154798 CTCCACAACTCCGCTTCCGA 62.155 60.000 0.00 0.00 36.29 4.55
785 790 1.738099 CTCCACAACTCCGCTTCCG 60.738 63.158 0.00 0.00 0.00 4.30
786 791 0.951040 CACTCCACAACTCCGCTTCC 60.951 60.000 0.00 0.00 0.00 3.46
787 792 0.951040 CCACTCCACAACTCCGCTTC 60.951 60.000 0.00 0.00 0.00 3.86
788 793 1.071471 CCACTCCACAACTCCGCTT 59.929 57.895 0.00 0.00 0.00 4.68
789 794 1.821061 CTCCACTCCACAACTCCGCT 61.821 60.000 0.00 0.00 0.00 5.52
790 795 1.374758 CTCCACTCCACAACTCCGC 60.375 63.158 0.00 0.00 0.00 5.54
791 796 0.898320 ATCTCCACTCCACAACTCCG 59.102 55.000 0.00 0.00 0.00 4.63
792 797 1.677217 GCATCTCCACTCCACAACTCC 60.677 57.143 0.00 0.00 0.00 3.85
793 798 1.277557 AGCATCTCCACTCCACAACTC 59.722 52.381 0.00 0.00 0.00 3.01
794 799 1.277557 GAGCATCTCCACTCCACAACT 59.722 52.381 0.00 0.00 0.00 3.16
795 800 1.731720 GAGCATCTCCACTCCACAAC 58.268 55.000 0.00 0.00 0.00 3.32
805 810 7.722416 GGGATTCCCTGTTTAGAGCATCTCC 62.722 52.000 14.98 0.00 40.96 3.71
806 811 4.745172 GGGATTCCCTGTTTAGAGCATCTC 60.745 50.000 14.98 0.00 40.96 2.75
807 812 3.137360 GGGATTCCCTGTTTAGAGCATCT 59.863 47.826 14.98 0.00 45.19 2.90
808 813 3.117888 TGGGATTCCCTGTTTAGAGCATC 60.118 47.826 22.38 0.00 45.70 3.91
809 814 2.852449 TGGGATTCCCTGTTTAGAGCAT 59.148 45.455 22.38 0.00 45.70 3.79
810 815 2.274542 TGGGATTCCCTGTTTAGAGCA 58.725 47.619 22.38 0.00 45.70 4.26
811 816 3.366052 TTGGGATTCCCTGTTTAGAGC 57.634 47.619 22.38 0.00 45.70 4.09
812 817 6.010219 TCTTTTTGGGATTCCCTGTTTAGAG 58.990 40.000 22.38 10.84 45.70 2.43
813 818 5.959512 TCTTTTTGGGATTCCCTGTTTAGA 58.040 37.500 22.38 14.48 45.70 2.10
814 819 6.493458 TCTTCTTTTTGGGATTCCCTGTTTAG 59.507 38.462 22.38 12.65 45.70 1.85
815 820 6.266786 GTCTTCTTTTTGGGATTCCCTGTTTA 59.733 38.462 22.38 0.00 45.70 2.01
816 821 5.070446 GTCTTCTTTTTGGGATTCCCTGTTT 59.930 40.000 22.38 0.00 45.70 2.83
817 822 4.588951 GTCTTCTTTTTGGGATTCCCTGTT 59.411 41.667 22.38 0.00 45.70 3.16
818 823 4.152647 GTCTTCTTTTTGGGATTCCCTGT 58.847 43.478 22.38 0.00 45.70 4.00
819 824 3.191371 CGTCTTCTTTTTGGGATTCCCTG 59.809 47.826 22.38 7.86 45.70 4.45
820 825 3.421844 CGTCTTCTTTTTGGGATTCCCT 58.578 45.455 22.38 0.00 45.70 4.20
821 826 2.094700 GCGTCTTCTTTTTGGGATTCCC 60.095 50.000 15.40 15.40 45.71 3.97
822 827 2.414161 CGCGTCTTCTTTTTGGGATTCC 60.414 50.000 0.00 0.00 0.00 3.01
823 828 2.482721 TCGCGTCTTCTTTTTGGGATTC 59.517 45.455 5.77 0.00 0.00 2.52
824 829 2.500229 TCGCGTCTTCTTTTTGGGATT 58.500 42.857 5.77 0.00 0.00 3.01
825 830 2.178912 TCGCGTCTTCTTTTTGGGAT 57.821 45.000 5.77 0.00 0.00 3.85
829 834 4.455124 CTTACCTTCGCGTCTTCTTTTTG 58.545 43.478 5.77 0.00 0.00 2.44
853 858 2.132762 GGTGGTCTTGTGTAACGTGAG 58.867 52.381 0.00 0.00 42.39 3.51
854 859 1.202557 GGGTGGTCTTGTGTAACGTGA 60.203 52.381 0.00 0.00 42.39 4.35
890 895 4.804420 ATCGGGAGGGCTGCCTCA 62.804 66.667 19.68 0.00 39.13 3.86
993 2545 6.668283 AGGATAATTCACCTAGCATACGGTAT 59.332 38.462 0.00 0.00 34.47 2.73
1067 2631 8.603242 AACAGAACTAATGTCGTTTTACTCAT 57.397 30.769 0.00 0.00 0.00 2.90
1192 2756 0.875908 CGTCACCTGCGGGACATATG 60.876 60.000 21.41 5.56 33.66 1.78
1271 2841 0.937441 AGAGGGAGAGCCAGGTATGA 59.063 55.000 0.00 0.00 35.15 2.15
1306 2890 4.051922 ACAAGAACAGAGACGACATCAAC 58.948 43.478 0.00 0.00 0.00 3.18
1508 3106 5.829062 TTCTGCCTAAACTAACAAGGGTA 57.171 39.130 0.00 0.00 0.00 3.69
1516 3114 7.601856 CACCAATTCATTTCTGCCTAAACTAA 58.398 34.615 0.00 0.00 0.00 2.24
1517 3115 6.350110 GCACCAATTCATTTCTGCCTAAACTA 60.350 38.462 0.00 0.00 0.00 2.24
1518 3116 5.567423 GCACCAATTCATTTCTGCCTAAACT 60.567 40.000 0.00 0.00 0.00 2.66
1522 3120 2.760092 GGCACCAATTCATTTCTGCCTA 59.240 45.455 8.94 0.00 37.06 3.93
1575 3173 7.397476 TCAGGTAGATGAACTTCATTGTACTCT 59.603 37.037 17.02 9.07 37.20 3.24
1580 3178 6.094603 GCATTCAGGTAGATGAACTTCATTGT 59.905 38.462 5.73 0.22 41.76 2.71
1685 3284 5.104318 GGAATGGAGAGAACCTGGATTAACT 60.104 44.000 0.00 0.00 0.00 2.24
1697 3296 2.026822 GGAAGCTGTGGAATGGAGAGAA 60.027 50.000 0.00 0.00 0.00 2.87
1698 3297 1.556911 GGAAGCTGTGGAATGGAGAGA 59.443 52.381 0.00 0.00 0.00 3.10
1711 3310 1.901591 ATGGACACACAAGGAAGCTG 58.098 50.000 0.00 0.00 0.00 4.24
1718 3317 6.918022 GGAAAAAGAAGTTATGGACACACAAG 59.082 38.462 0.00 0.00 0.00 3.16
1744 3350 3.134574 TGTCATACAGCCGTCCTTTTT 57.865 42.857 0.00 0.00 0.00 1.94
1819 3425 1.203052 CCATCAAGAAAACGGCATGCT 59.797 47.619 18.92 0.00 0.00 3.79
1839 3445 4.558538 AAAAGCTGTATGAATCGCATCC 57.441 40.909 0.00 0.00 38.44 3.51
1855 3461 0.827368 TGGTCAACCCCACAAAAAGC 59.173 50.000 0.00 0.00 34.29 3.51
1872 3478 8.195436 AGATTTGAAGATACAATCAATGCTTGG 58.805 33.333 1.81 0.00 35.63 3.61
1875 3481 7.705325 GCAAGATTTGAAGATACAATCAATGCT 59.295 33.333 11.55 0.00 35.63 3.79
1884 3490 5.393352 GGCATGTGCAAGATTTGAAGATACA 60.393 40.000 7.36 0.00 44.36 2.29
1888 3494 3.159472 AGGCATGTGCAAGATTTGAAGA 58.841 40.909 7.36 0.00 44.36 2.87
1891 3497 2.490509 CTGAGGCATGTGCAAGATTTGA 59.509 45.455 7.36 0.00 44.36 2.69
1944 3550 5.578005 AGGAGAACTCGTCGAATGATAAA 57.422 39.130 0.00 0.00 0.00 1.40
2039 3665 9.941664 GAGATAATTTTGGTGTCACATAAGATG 57.058 33.333 5.12 0.00 0.00 2.90
2132 3758 8.718102 AGTGAACATTAGCAAATAGACGTTAT 57.282 30.769 0.00 0.00 0.00 1.89
2137 3763 7.334421 TGGAAGAGTGAACATTAGCAAATAGAC 59.666 37.037 0.00 0.00 0.00 2.59
2157 3783 3.675348 AGGGCATGAATCAATGGAAGA 57.325 42.857 0.00 0.00 0.00 2.87
2164 3790 2.905415 ACTGGAAGGGCATGAATCAA 57.095 45.000 0.00 0.00 39.30 2.57
2512 4139 4.484537 ACTCTAGCATGACAGCATTTCT 57.515 40.909 0.00 0.00 36.85 2.52
2519 4146 6.577103 TCCAAAGATAACTCTAGCATGACAG 58.423 40.000 0.00 0.00 0.00 3.51
2544 4171 2.755103 TCAATTAGCAGAGCTGAGACGA 59.245 45.455 0.85 0.00 40.10 4.20
2570 4197 6.183360 TGCATTTATTCTAAGTTACCAGCTGC 60.183 38.462 8.66 0.00 0.00 5.25
2644 4280 2.124560 AAGATATAGCCCAGGCAGGT 57.875 50.000 12.03 0.00 44.88 4.00
2748 4387 8.428852 TGCACTTTACCACATCTGTATATGTAT 58.571 33.333 0.00 0.00 38.01 2.29
3210 4855 5.819991 TCTCTTATTGCCTGGAAGACAAAT 58.180 37.500 0.00 0.00 34.07 2.32
3342 4987 0.459237 CGATCTCTCAGCGCCTGTTT 60.459 55.000 2.29 0.00 32.61 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.