Multiple sequence alignment - TraesCS1A01G149300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G149300 chr1A 100.000 5922 0 0 1 5922 256822778 256828699 0.000000e+00 10936.0
1 TraesCS1A01G149300 chr1D 94.206 4902 148 52 328 5177 202565646 202570463 0.000000e+00 7354.0
2 TraesCS1A01G149300 chr1D 100.000 84 0 0 3718 3801 478271238 478271321 7.950000e-34 156.0
3 TraesCS1A01G149300 chr1D 95.699 93 2 2 3711 3802 121236934 121236843 1.330000e-31 148.0
4 TraesCS1A01G149300 chr1D 89.610 77 8 0 196 272 415209047 415209123 1.360000e-16 99.0
5 TraesCS1A01G149300 chr1B 93.594 4777 162 48 411 5106 296498162 296502875 0.000000e+00 6994.0
6 TraesCS1A01G149300 chr1B 87.817 829 79 10 5105 5921 296527846 296528664 0.000000e+00 952.0
7 TraesCS1A01G149300 chr1B 88.158 76 6 3 196 270 268547789 268547716 2.940000e-13 87.9
8 TraesCS1A01G149300 chr5A 86.304 533 73 0 4359 4891 438472398 438471866 1.110000e-161 580.0
9 TraesCS1A01G149300 chr5A 82.102 609 103 5 1936 2541 438474852 438474247 3.160000e-142 516.0
10 TraesCS1A01G149300 chr5A 83.586 396 55 6 3863 4249 438472922 438472528 4.360000e-96 363.0
11 TraesCS1A01G149300 chr5A 78.125 448 70 19 2821 3255 438473781 438473349 5.890000e-65 259.0
12 TraesCS1A01G149300 chr5A 83.333 264 42 2 2545 2807 438474150 438473888 5.930000e-60 243.0
13 TraesCS1A01G149300 chr5A 79.522 293 46 10 2731 3018 654079753 654080036 4.680000e-46 196.0
14 TraesCS1A01G149300 chr5A 79.661 177 26 9 1035 1206 640173473 640173302 1.040000e-22 119.0
15 TraesCS1A01G149300 chr5A 95.652 69 3 0 5179 5247 616152707 616152639 1.740000e-20 111.0
16 TraesCS1A01G149300 chr5A 88.608 79 9 0 196 274 643920402 643920480 4.890000e-16 97.1
17 TraesCS1A01G149300 chr5A 100.000 29 0 0 938 966 593352123 593352151 3.000000e-03 54.7
18 TraesCS1A01G149300 chr5D 85.955 534 73 2 4359 4891 337302284 337301752 2.390000e-158 569.0
19 TraesCS1A01G149300 chr5D 81.609 609 106 5 1936 2541 337304696 337304091 3.190000e-137 499.0
20 TraesCS1A01G149300 chr5D 83.880 366 52 5 3889 4249 337302775 337302412 5.680000e-90 342.0
21 TraesCS1A01G149300 chr5D 78.378 444 68 18 2821 3255 337303646 337303222 4.550000e-66 263.0
22 TraesCS1A01G149300 chr5D 84.091 264 40 2 2545 2807 337304015 337303753 2.740000e-63 254.0
23 TraesCS1A01G149300 chr5D 79.667 300 46 12 2724 3017 115949933 115950223 1.010000e-47 202.0
24 TraesCS1A01G149300 chr5D 79.443 287 46 9 2737 3018 526880929 526881207 2.180000e-44 191.0
25 TraesCS1A01G149300 chr5D 76.471 255 58 1 5563 5815 408442004 408441750 2.880000e-28 137.0
26 TraesCS1A01G149300 chr5D 80.791 177 24 9 1035 1206 511883228 511883057 4.820000e-26 130.0
27 TraesCS1A01G149300 chr5D 90.805 87 2 5 5174 5257 493131020 493130937 1.740000e-20 111.0
28 TraesCS1A01G149300 chr5D 92.000 75 6 0 196 270 234857510 234857584 8.120000e-19 106.0
29 TraesCS1A01G149300 chr5D 91.176 68 6 0 203 270 482889100 482889167 6.320000e-15 93.5
30 TraesCS1A01G149300 chr5D 100.000 28 0 0 5296 5323 499877409 499877436 1.100000e-02 52.8
31 TraesCS1A01G149300 chr5B 85.145 552 80 2 4359 4909 395922339 395921789 1.110000e-156 564.0
32 TraesCS1A01G149300 chr5B 81.311 610 106 7 1936 2541 395924753 395924148 6.900000e-134 488.0
33 TraesCS1A01G149300 chr5B 78.779 721 122 26 5176 5876 633495925 633496634 7.000000e-124 455.0
34 TraesCS1A01G149300 chr5B 83.014 365 57 3 3889 4249 395922828 395922465 5.720000e-85 326.0
35 TraesCS1A01G149300 chr5B 84.091 264 40 2 2545 2807 395924062 395923800 2.740000e-63 254.0
36 TraesCS1A01G149300 chr5B 78.049 287 50 9 2737 3018 662961845 662962123 1.020000e-37 169.0
37 TraesCS1A01G149300 chr5B 75.839 298 65 6 5567 5860 419729188 419729482 1.720000e-30 145.0
38 TraesCS1A01G149300 chr5B 76.889 225 50 1 5563 5785 489998503 489998279 6.230000e-25 126.0
39 TraesCS1A01G149300 chr5B 93.023 86 3 3 5174 5257 608358693 608358609 8.060000e-24 122.0
40 TraesCS1A01G149300 chr5B 80.114 176 25 9 1036 1206 642836472 642836302 8.060000e-24 122.0
41 TraesCS1A01G149300 chr5B 90.805 87 4 4 5174 5257 608213403 608213318 4.850000e-21 113.0
42 TraesCS1A01G149300 chr5B 90.278 72 4 3 202 270 163102300 163102229 2.270000e-14 91.6
43 TraesCS1A01G149300 chr3B 77.976 504 105 3 4367 4870 525611444 525611941 1.600000e-80 311.0
44 TraesCS1A01G149300 chr3B 77.733 247 53 2 5559 5803 155523434 155523188 3.700000e-32 150.0
45 TraesCS1A01G149300 chr3B 88.158 76 9 0 196 271 780444537 780444612 2.270000e-14 91.6
46 TraesCS1A01G149300 chr7D 81.443 291 43 9 2733 3019 366451255 366451538 1.660000e-55 228.0
47 TraesCS1A01G149300 chr7D 90.741 108 6 4 3704 3808 458524685 458524579 2.230000e-29 141.0
48 TraesCS1A01G149300 chr7D 83.333 90 14 1 4156 4244 449058916 449058827 1.370000e-11 82.4
49 TraesCS1A01G149300 chr7A 81.100 291 44 9 2733 3019 404473584 404473867 7.720000e-54 222.0
50 TraesCS1A01G149300 chr7A 79.918 244 39 6 5589 5828 11288613 11288850 2.840000e-38 171.0
51 TraesCS1A01G149300 chr7A 83.333 90 14 1 4156 4244 546711328 546711417 1.370000e-11 82.4
52 TraesCS1A01G149300 chr7B 80.756 291 45 9 2733 3019 319854558 319854275 3.590000e-52 217.0
53 TraesCS1A01G149300 chr7B 96.703 91 1 2 3720 3808 480326914 480326824 3.700000e-32 150.0
54 TraesCS1A01G149300 chr7B 90.667 75 7 0 196 270 671765667 671765741 3.780000e-17 100.0
55 TraesCS1A01G149300 chr7B 83.721 86 13 1 4156 4241 466970394 466970310 4.920000e-11 80.5
56 TraesCS1A01G149300 chr4A 80.579 242 42 3 5589 5828 726082356 726082118 1.310000e-41 182.0
57 TraesCS1A01G149300 chr4A 98.876 89 1 0 3719 3807 137968565 137968477 6.140000e-35 159.0
58 TraesCS1A01G149300 chr4A 79.070 172 33 2 5659 5827 102443238 102443067 1.350000e-21 115.0
59 TraesCS1A01G149300 chr4A 73.818 275 59 10 5604 5871 720169338 720169606 4.890000e-16 97.1
60 TraesCS1A01G149300 chr2A 76.204 353 70 12 2234 2579 72692706 72693051 2.190000e-39 174.0
61 TraesCS1A01G149300 chr4B 96.809 94 0 3 3719 3809 413113549 413113642 2.860000e-33 154.0
62 TraesCS1A01G149300 chr4D 95.745 94 1 3 3719 3809 335037527 335037620 1.330000e-31 148.0
63 TraesCS1A01G149300 chr3D 78.667 225 30 15 5174 5384 472396632 472396412 3.720000e-27 134.0
64 TraesCS1A01G149300 chr3A 79.570 186 22 15 5174 5346 614756178 614755996 1.040000e-22 119.0
65 TraesCS1A01G149300 chr3A 87.500 80 10 0 196 275 600434868 600434947 6.320000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G149300 chr1A 256822778 256828699 5921 False 10936.0 10936 100.00000 1 5922 1 chr1A.!!$F1 5921
1 TraesCS1A01G149300 chr1D 202565646 202570463 4817 False 7354.0 7354 94.20600 328 5177 1 chr1D.!!$F1 4849
2 TraesCS1A01G149300 chr1B 296498162 296502875 4713 False 6994.0 6994 93.59400 411 5106 1 chr1B.!!$F1 4695
3 TraesCS1A01G149300 chr1B 296527846 296528664 818 False 952.0 952 87.81700 5105 5921 1 chr1B.!!$F2 816
4 TraesCS1A01G149300 chr5A 438471866 438474852 2986 True 392.2 580 82.69000 1936 4891 5 chr5A.!!$R3 2955
5 TraesCS1A01G149300 chr5D 337301752 337304696 2944 True 385.4 569 82.78260 1936 4891 5 chr5D.!!$R4 2955
6 TraesCS1A01G149300 chr5B 633495925 633496634 709 False 455.0 455 78.77900 5176 5876 1 chr5B.!!$F2 700
7 TraesCS1A01G149300 chr5B 395921789 395924753 2964 True 408.0 564 83.39025 1936 4909 4 chr5B.!!$R6 2973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.243095 GGGAGTACGTTCGAGCAAGT 59.757 55.0 0.0 0.0 0.00 3.16 F
412 413 0.250234 CAAGTTCCATCTCCCGAGCA 59.750 55.0 0.0 0.0 0.00 4.26 F
1418 1446 0.308376 GTCTACTCGGTGAGATCGGC 59.692 60.0 0.0 0.0 33.32 5.54 F
1656 1693 0.249911 AAGAGGAGTTCGTGTGGTGC 60.250 55.0 0.0 0.0 0.00 5.01 F
3095 3367 0.381089 GAGCTGATGAATGCTGTGGC 59.619 55.0 0.0 0.0 39.91 5.01 F
3837 4146 0.391130 TTCGTGGAGCTTCCCATTCG 60.391 55.0 0.0 0.0 38.66 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1238 1266 0.324614 TGTGATGAACCGTGGCATCT 59.675 50.000 13.02 0.00 41.08 2.90 R
1601 1637 0.587768 TCTCATGCAGCAACAACACG 59.412 50.000 0.00 0.00 0.00 4.49 R
2765 2929 0.385390 CCTTCTTGTGGTGGTTGTGC 59.615 55.000 0.00 0.00 0.00 4.57 R
3491 3775 0.179153 TCTTCTGCGACATGAGCGAG 60.179 55.000 14.93 11.65 37.44 5.03 R
4480 4920 1.289066 CTGGAAGACGGCGAACAGA 59.711 57.895 16.62 0.00 34.07 3.41 R
5118 5558 0.109781 GTGGTGTATGCCAAGTTGCG 60.110 55.000 0.00 0.00 40.68 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.626930 TGGCTGTTTAGTCCACTTTTGT 58.373 40.909 0.00 0.00 0.00 2.83
34 35 4.863152 CACTTTTGTGGGCTTTGAAAAG 57.137 40.909 0.00 0.00 46.16 2.27
47 48 5.738118 CTTTGAAAAGCTTGCATGGAAAA 57.262 34.783 0.00 0.00 0.00 2.29
48 49 6.121613 CTTTGAAAAGCTTGCATGGAAAAA 57.878 33.333 0.00 0.00 0.00 1.94
75 76 9.793259 AAGATGAGTTTTGTGGTTCTTAATAGA 57.207 29.630 0.00 0.00 0.00 1.98
76 77 9.965902 AGATGAGTTTTGTGGTTCTTAATAGAT 57.034 29.630 0.00 0.00 0.00 1.98
77 78 9.994432 GATGAGTTTTGTGGTTCTTAATAGATG 57.006 33.333 0.00 0.00 0.00 2.90
78 79 8.335532 TGAGTTTTGTGGTTCTTAATAGATGG 57.664 34.615 0.00 0.00 0.00 3.51
79 80 7.393234 TGAGTTTTGTGGTTCTTAATAGATGGG 59.607 37.037 0.00 0.00 0.00 4.00
80 81 7.466804 AGTTTTGTGGTTCTTAATAGATGGGA 58.533 34.615 0.00 0.00 0.00 4.37
81 82 7.393515 AGTTTTGTGGTTCTTAATAGATGGGAC 59.606 37.037 0.00 0.00 0.00 4.46
82 83 6.636454 TTGTGGTTCTTAATAGATGGGACT 57.364 37.500 0.00 0.00 0.00 3.85
83 84 7.743116 TTGTGGTTCTTAATAGATGGGACTA 57.257 36.000 0.00 0.00 0.00 2.59
84 85 7.743116 TGTGGTTCTTAATAGATGGGACTAA 57.257 36.000 0.00 0.00 0.00 2.24
85 86 8.331931 TGTGGTTCTTAATAGATGGGACTAAT 57.668 34.615 0.00 0.00 0.00 1.73
86 87 8.210946 TGTGGTTCTTAATAGATGGGACTAATG 58.789 37.037 0.00 0.00 0.00 1.90
87 88 8.211629 GTGGTTCTTAATAGATGGGACTAATGT 58.788 37.037 0.00 0.00 0.00 2.71
88 89 8.778059 TGGTTCTTAATAGATGGGACTAATGTT 58.222 33.333 0.00 0.00 0.00 2.71
89 90 9.628500 GGTTCTTAATAGATGGGACTAATGTTT 57.372 33.333 0.00 0.00 0.00 2.83
94 95 7.645058 AATAGATGGGACTAATGTTTTGTGG 57.355 36.000 0.00 0.00 0.00 4.17
95 96 4.998051 AGATGGGACTAATGTTTTGTGGT 58.002 39.130 0.00 0.00 0.00 4.16
96 97 5.393866 AGATGGGACTAATGTTTTGTGGTT 58.606 37.500 0.00 0.00 0.00 3.67
97 98 5.476945 AGATGGGACTAATGTTTTGTGGTTC 59.523 40.000 0.00 0.00 0.00 3.62
98 99 3.892588 TGGGACTAATGTTTTGTGGTTCC 59.107 43.478 0.00 0.00 0.00 3.62
99 100 3.257375 GGGACTAATGTTTTGTGGTTCCC 59.743 47.826 0.00 0.00 0.00 3.97
100 101 4.149598 GGACTAATGTTTTGTGGTTCCCT 58.850 43.478 0.00 0.00 0.00 4.20
101 102 4.587262 GGACTAATGTTTTGTGGTTCCCTT 59.413 41.667 0.00 0.00 0.00 3.95
102 103 5.278808 GGACTAATGTTTTGTGGTTCCCTTC 60.279 44.000 0.00 0.00 0.00 3.46
103 104 4.587262 ACTAATGTTTTGTGGTTCCCTTCC 59.413 41.667 0.00 0.00 0.00 3.46
104 105 2.838637 TGTTTTGTGGTTCCCTTCCT 57.161 45.000 0.00 0.00 0.00 3.36
105 106 2.661718 TGTTTTGTGGTTCCCTTCCTC 58.338 47.619 0.00 0.00 0.00 3.71
106 107 2.243736 TGTTTTGTGGTTCCCTTCCTCT 59.756 45.455 0.00 0.00 0.00 3.69
107 108 2.885266 GTTTTGTGGTTCCCTTCCTCTC 59.115 50.000 0.00 0.00 0.00 3.20
108 109 2.118403 TTGTGGTTCCCTTCCTCTCT 57.882 50.000 0.00 0.00 0.00 3.10
109 110 3.269592 TTGTGGTTCCCTTCCTCTCTA 57.730 47.619 0.00 0.00 0.00 2.43
110 111 2.537143 TGTGGTTCCCTTCCTCTCTAC 58.463 52.381 0.00 0.00 0.00 2.59
111 112 2.111972 TGTGGTTCCCTTCCTCTCTACT 59.888 50.000 0.00 0.00 0.00 2.57
112 113 3.174779 GTGGTTCCCTTCCTCTCTACTT 58.825 50.000 0.00 0.00 0.00 2.24
113 114 3.583526 GTGGTTCCCTTCCTCTCTACTTT 59.416 47.826 0.00 0.00 0.00 2.66
114 115 3.838903 TGGTTCCCTTCCTCTCTACTTTC 59.161 47.826 0.00 0.00 0.00 2.62
115 116 3.198200 GGTTCCCTTCCTCTCTACTTTCC 59.802 52.174 0.00 0.00 0.00 3.13
116 117 4.098155 GTTCCCTTCCTCTCTACTTTCCT 58.902 47.826 0.00 0.00 0.00 3.36
117 118 5.270794 GTTCCCTTCCTCTCTACTTTCCTA 58.729 45.833 0.00 0.00 0.00 2.94
118 119 4.869451 TCCCTTCCTCTCTACTTTCCTAC 58.131 47.826 0.00 0.00 0.00 3.18
119 120 3.962063 CCCTTCCTCTCTACTTTCCTACC 59.038 52.174 0.00 0.00 0.00 3.18
120 121 4.572223 CCCTTCCTCTCTACTTTCCTACCA 60.572 50.000 0.00 0.00 0.00 3.25
121 122 5.024118 CCTTCCTCTCTACTTTCCTACCAA 58.976 45.833 0.00 0.00 0.00 3.67
122 123 5.663556 CCTTCCTCTCTACTTTCCTACCAAT 59.336 44.000 0.00 0.00 0.00 3.16
123 124 6.839657 CCTTCCTCTCTACTTTCCTACCAATA 59.160 42.308 0.00 0.00 0.00 1.90
124 125 7.511028 CCTTCCTCTCTACTTTCCTACCAATAT 59.489 40.741 0.00 0.00 0.00 1.28
125 126 8.480133 TTCCTCTCTACTTTCCTACCAATATC 57.520 38.462 0.00 0.00 0.00 1.63
126 127 6.715718 TCCTCTCTACTTTCCTACCAATATCG 59.284 42.308 0.00 0.00 0.00 2.92
127 128 6.328641 TCTCTACTTTCCTACCAATATCGC 57.671 41.667 0.00 0.00 0.00 4.58
128 129 5.243283 TCTCTACTTTCCTACCAATATCGCC 59.757 44.000 0.00 0.00 0.00 5.54
129 130 5.145564 TCTACTTTCCTACCAATATCGCCT 58.854 41.667 0.00 0.00 0.00 5.52
130 131 4.073293 ACTTTCCTACCAATATCGCCTG 57.927 45.455 0.00 0.00 0.00 4.85
131 132 2.543777 TTCCTACCAATATCGCCTGC 57.456 50.000 0.00 0.00 0.00 4.85
132 133 1.717032 TCCTACCAATATCGCCTGCT 58.283 50.000 0.00 0.00 0.00 4.24
133 134 2.047061 TCCTACCAATATCGCCTGCTT 58.953 47.619 0.00 0.00 0.00 3.91
134 135 3.236047 TCCTACCAATATCGCCTGCTTA 58.764 45.455 0.00 0.00 0.00 3.09
135 136 3.258372 TCCTACCAATATCGCCTGCTTAG 59.742 47.826 0.00 0.00 0.00 2.18
136 137 3.258372 CCTACCAATATCGCCTGCTTAGA 59.742 47.826 0.00 0.00 0.00 2.10
137 138 4.081420 CCTACCAATATCGCCTGCTTAGAT 60.081 45.833 0.00 0.00 0.00 1.98
138 139 3.931578 ACCAATATCGCCTGCTTAGATC 58.068 45.455 0.00 0.00 0.00 2.75
139 140 2.926200 CCAATATCGCCTGCTTAGATCG 59.074 50.000 0.00 0.00 0.00 3.69
140 141 3.367395 CCAATATCGCCTGCTTAGATCGA 60.367 47.826 0.00 0.00 0.00 3.59
141 142 4.237724 CAATATCGCCTGCTTAGATCGAA 58.762 43.478 0.00 0.00 32.74 3.71
142 143 2.890808 ATCGCCTGCTTAGATCGAAA 57.109 45.000 0.00 0.00 32.74 3.46
143 144 1.922570 TCGCCTGCTTAGATCGAAAC 58.077 50.000 0.00 0.00 0.00 2.78
144 145 1.203758 TCGCCTGCTTAGATCGAAACA 59.796 47.619 0.00 0.00 0.00 2.83
145 146 2.159099 TCGCCTGCTTAGATCGAAACAT 60.159 45.455 0.00 0.00 0.00 2.71
146 147 2.033407 CGCCTGCTTAGATCGAAACATG 60.033 50.000 0.00 0.00 0.00 3.21
147 148 2.939103 GCCTGCTTAGATCGAAACATGT 59.061 45.455 0.00 0.00 0.00 3.21
148 149 3.375299 GCCTGCTTAGATCGAAACATGTT 59.625 43.478 4.92 4.92 0.00 2.71
149 150 4.142600 GCCTGCTTAGATCGAAACATGTTT 60.143 41.667 23.49 23.49 35.14 2.83
150 151 5.563842 CCTGCTTAGATCGAAACATGTTTC 58.436 41.667 32.42 32.42 43.98 2.78
151 152 5.122239 CCTGCTTAGATCGAAACATGTTTCA 59.878 40.000 37.33 27.96 46.84 2.69
152 153 6.183360 CCTGCTTAGATCGAAACATGTTTCAT 60.183 38.462 37.33 30.27 46.84 2.57
153 154 7.144722 TGCTTAGATCGAAACATGTTTCATT 57.855 32.000 37.33 27.95 46.84 2.57
154 155 8.262715 TGCTTAGATCGAAACATGTTTCATTA 57.737 30.769 37.33 26.72 46.84 1.90
155 156 8.175069 TGCTTAGATCGAAACATGTTTCATTAC 58.825 33.333 37.33 27.18 46.84 1.89
156 157 7.640240 GCTTAGATCGAAACATGTTTCATTACC 59.360 37.037 37.33 24.83 46.84 2.85
157 158 8.786826 TTAGATCGAAACATGTTTCATTACCT 57.213 30.769 37.33 28.43 46.84 3.08
158 159 7.687941 AGATCGAAACATGTTTCATTACCTT 57.312 32.000 37.33 20.18 46.84 3.50
159 160 8.110860 AGATCGAAACATGTTTCATTACCTTT 57.889 30.769 37.33 19.37 46.84 3.11
160 161 8.023128 AGATCGAAACATGTTTCATTACCTTTG 58.977 33.333 37.33 23.53 46.84 2.77
161 162 7.265647 TCGAAACATGTTTCATTACCTTTGA 57.734 32.000 37.33 24.95 46.84 2.69
162 163 7.881142 TCGAAACATGTTTCATTACCTTTGAT 58.119 30.769 37.33 10.19 46.84 2.57
163 164 8.020819 TCGAAACATGTTTCATTACCTTTGATC 58.979 33.333 37.33 16.43 46.84 2.92
164 165 8.023128 CGAAACATGTTTCATTACCTTTGATCT 58.977 33.333 37.33 9.24 46.84 2.75
165 166 9.132521 GAAACATGTTTCATTACCTTTGATCTG 57.867 33.333 35.45 0.00 46.03 2.90
166 167 7.765695 ACATGTTTCATTACCTTTGATCTGT 57.234 32.000 0.00 0.00 0.00 3.41
167 168 7.596494 ACATGTTTCATTACCTTTGATCTGTG 58.404 34.615 0.00 0.00 0.00 3.66
168 169 6.012658 TGTTTCATTACCTTTGATCTGTGC 57.987 37.500 0.00 0.00 0.00 4.57
169 170 5.048083 TGTTTCATTACCTTTGATCTGTGCC 60.048 40.000 0.00 0.00 0.00 5.01
170 171 3.620488 TCATTACCTTTGATCTGTGCCC 58.380 45.455 0.00 0.00 0.00 5.36
171 172 3.010027 TCATTACCTTTGATCTGTGCCCA 59.990 43.478 0.00 0.00 0.00 5.36
172 173 3.517296 TTACCTTTGATCTGTGCCCAA 57.483 42.857 0.00 0.00 0.00 4.12
173 174 1.620822 ACCTTTGATCTGTGCCCAAC 58.379 50.000 0.00 0.00 0.00 3.77
174 175 0.523072 CCTTTGATCTGTGCCCAACG 59.477 55.000 0.00 0.00 0.00 4.10
175 176 1.522668 CTTTGATCTGTGCCCAACGA 58.477 50.000 0.00 0.00 0.00 3.85
176 177 2.086869 CTTTGATCTGTGCCCAACGAT 58.913 47.619 0.00 0.00 0.00 3.73
177 178 3.270027 CTTTGATCTGTGCCCAACGATA 58.730 45.455 0.00 0.00 0.00 2.92
178 179 2.309528 TGATCTGTGCCCAACGATAC 57.690 50.000 0.00 0.00 0.00 2.24
179 180 1.134521 TGATCTGTGCCCAACGATACC 60.135 52.381 0.00 0.00 0.00 2.73
180 181 1.139058 GATCTGTGCCCAACGATACCT 59.861 52.381 0.00 0.00 0.00 3.08
181 182 0.981183 TCTGTGCCCAACGATACCTT 59.019 50.000 0.00 0.00 0.00 3.50
182 183 1.349688 TCTGTGCCCAACGATACCTTT 59.650 47.619 0.00 0.00 0.00 3.11
183 184 2.159382 CTGTGCCCAACGATACCTTTT 58.841 47.619 0.00 0.00 0.00 2.27
184 185 3.008157 TCTGTGCCCAACGATACCTTTTA 59.992 43.478 0.00 0.00 0.00 1.52
185 186 3.075884 TGTGCCCAACGATACCTTTTAC 58.924 45.455 0.00 0.00 0.00 2.01
186 187 3.244630 TGTGCCCAACGATACCTTTTACT 60.245 43.478 0.00 0.00 0.00 2.24
187 188 3.373130 GTGCCCAACGATACCTTTTACTC 59.627 47.826 0.00 0.00 0.00 2.59
188 189 2.606272 GCCCAACGATACCTTTTACTCG 59.394 50.000 0.00 0.00 37.17 4.18
189 190 2.606272 CCCAACGATACCTTTTACTCGC 59.394 50.000 0.00 0.00 34.60 5.03
190 191 3.518590 CCAACGATACCTTTTACTCGCT 58.481 45.455 0.00 0.00 34.60 4.93
191 192 3.550678 CCAACGATACCTTTTACTCGCTC 59.449 47.826 0.00 0.00 34.60 5.03
192 193 3.433513 ACGATACCTTTTACTCGCTCC 57.566 47.619 0.00 0.00 34.60 4.70
193 194 2.223433 ACGATACCTTTTACTCGCTCCG 60.223 50.000 0.00 0.00 34.60 4.63
194 195 2.223433 CGATACCTTTTACTCGCTCCGT 60.223 50.000 0.00 0.00 0.00 4.69
195 196 3.002656 CGATACCTTTTACTCGCTCCGTA 59.997 47.826 0.00 0.00 0.00 4.02
196 197 4.320057 CGATACCTTTTACTCGCTCCGTAT 60.320 45.833 0.00 0.00 0.00 3.06
197 198 3.160777 ACCTTTTACTCGCTCCGTATG 57.839 47.619 0.00 0.00 0.00 2.39
198 199 2.756760 ACCTTTTACTCGCTCCGTATGA 59.243 45.455 0.00 0.00 0.00 2.15
199 200 3.383825 ACCTTTTACTCGCTCCGTATGAT 59.616 43.478 0.00 0.00 0.00 2.45
200 201 4.142004 ACCTTTTACTCGCTCCGTATGATT 60.142 41.667 0.00 0.00 0.00 2.57
201 202 4.809426 CCTTTTACTCGCTCCGTATGATTT 59.191 41.667 0.00 0.00 0.00 2.17
202 203 5.981315 CCTTTTACTCGCTCCGTATGATTTA 59.019 40.000 0.00 0.00 0.00 1.40
203 204 6.477688 CCTTTTACTCGCTCCGTATGATTTAA 59.522 38.462 0.00 0.00 0.00 1.52
204 205 6.817270 TTTACTCGCTCCGTATGATTTAAC 57.183 37.500 0.00 0.00 0.00 2.01
205 206 4.650754 ACTCGCTCCGTATGATTTAACT 57.349 40.909 0.00 0.00 0.00 2.24
206 207 5.007385 ACTCGCTCCGTATGATTTAACTT 57.993 39.130 0.00 0.00 0.00 2.66
207 208 5.416947 ACTCGCTCCGTATGATTTAACTTT 58.583 37.500 0.00 0.00 0.00 2.66
208 209 5.291128 ACTCGCTCCGTATGATTTAACTTTG 59.709 40.000 0.00 0.00 0.00 2.77
209 210 5.172934 TCGCTCCGTATGATTTAACTTTGT 58.827 37.500 0.00 0.00 0.00 2.83
210 211 6.331845 TCGCTCCGTATGATTTAACTTTGTA 58.668 36.000 0.00 0.00 0.00 2.41
211 212 6.982141 TCGCTCCGTATGATTTAACTTTGTAT 59.018 34.615 0.00 0.00 0.00 2.29
212 213 7.493320 TCGCTCCGTATGATTTAACTTTGTATT 59.507 33.333 0.00 0.00 0.00 1.89
213 214 8.757789 CGCTCCGTATGATTTAACTTTGTATTA 58.242 33.333 0.00 0.00 0.00 0.98
241 242 9.866936 TTTTAATACAACGCTAGTACAAAGTTG 57.133 29.630 16.46 16.46 45.25 3.16
242 243 6.476243 AATACAACGCTAGTACAAAGTTGG 57.524 37.500 19.82 8.62 44.38 3.77
243 244 4.062677 ACAACGCTAGTACAAAGTTGGA 57.937 40.909 19.82 0.00 44.38 3.53
244 245 4.638304 ACAACGCTAGTACAAAGTTGGAT 58.362 39.130 19.82 5.31 44.38 3.41
245 246 4.689345 ACAACGCTAGTACAAAGTTGGATC 59.311 41.667 19.82 0.00 44.38 3.36
246 247 4.530710 ACGCTAGTACAAAGTTGGATCA 57.469 40.909 0.00 0.00 0.00 2.92
247 248 5.086104 ACGCTAGTACAAAGTTGGATCAT 57.914 39.130 0.00 0.00 0.00 2.45
248 249 5.109903 ACGCTAGTACAAAGTTGGATCATC 58.890 41.667 0.00 0.00 0.00 2.92
249 250 5.105310 ACGCTAGTACAAAGTTGGATCATCT 60.105 40.000 0.00 0.00 0.00 2.90
250 251 6.096423 ACGCTAGTACAAAGTTGGATCATCTA 59.904 38.462 0.00 0.00 0.00 1.98
251 252 7.148641 CGCTAGTACAAAGTTGGATCATCTAT 58.851 38.462 0.00 0.00 0.00 1.98
252 253 7.653713 CGCTAGTACAAAGTTGGATCATCTATT 59.346 37.037 0.00 0.00 0.00 1.73
253 254 9.331282 GCTAGTACAAAGTTGGATCATCTATTT 57.669 33.333 0.00 0.00 0.00 1.40
256 257 9.739276 AGTACAAAGTTGGATCATCTATTTTGA 57.261 29.630 12.56 0.00 0.00 2.69
259 260 9.696917 ACAAAGTTGGATCATCTATTTTGAAAC 57.303 29.630 12.56 0.00 0.00 2.78
260 261 8.853345 CAAAGTTGGATCATCTATTTTGAAACG 58.147 33.333 0.00 0.00 0.00 3.60
261 262 7.088589 AGTTGGATCATCTATTTTGAAACGG 57.911 36.000 0.00 0.00 0.00 4.44
262 263 6.884295 AGTTGGATCATCTATTTTGAAACGGA 59.116 34.615 0.00 0.00 0.00 4.69
263 264 6.925610 TGGATCATCTATTTTGAAACGGAG 57.074 37.500 0.00 0.00 0.00 4.63
264 265 5.822519 TGGATCATCTATTTTGAAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
265 266 5.239525 GGATCATCTATTTTGAAACGGAGGG 59.760 44.000 0.00 0.00 0.00 4.30
266 267 5.429681 TCATCTATTTTGAAACGGAGGGA 57.570 39.130 0.00 0.00 0.00 4.20
267 268 5.428253 TCATCTATTTTGAAACGGAGGGAG 58.572 41.667 0.00 0.00 0.00 4.30
268 269 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
269 270 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
270 271 5.727434 TCTATTTTGAAACGGAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
271 272 2.443887 TTTGAAACGGAGGGAGTACG 57.556 50.000 0.00 0.00 0.00 3.67
272 273 1.331214 TTGAAACGGAGGGAGTACGT 58.669 50.000 0.00 0.00 43.43 3.57
275 276 1.878775 AACGGAGGGAGTACGTTCG 59.121 57.895 0.00 0.00 46.50 3.95
276 277 0.606401 AACGGAGGGAGTACGTTCGA 60.606 55.000 1.93 0.00 46.50 3.71
277 278 1.023513 ACGGAGGGAGTACGTTCGAG 61.024 60.000 1.93 0.00 38.19 4.04
278 279 1.432657 GGAGGGAGTACGTTCGAGC 59.567 63.158 0.00 0.00 0.00 5.03
279 280 1.310933 GGAGGGAGTACGTTCGAGCA 61.311 60.000 0.00 0.00 0.00 4.26
280 281 0.524862 GAGGGAGTACGTTCGAGCAA 59.475 55.000 0.00 0.00 0.00 3.91
281 282 0.526662 AGGGAGTACGTTCGAGCAAG 59.473 55.000 0.00 0.00 0.00 4.01
282 283 0.243095 GGGAGTACGTTCGAGCAAGT 59.757 55.000 0.00 0.00 0.00 3.16
283 284 1.337821 GGAGTACGTTCGAGCAAGTG 58.662 55.000 0.00 0.00 0.00 3.16
284 285 1.337821 GAGTACGTTCGAGCAAGTGG 58.662 55.000 0.00 0.00 0.00 4.00
285 286 0.956633 AGTACGTTCGAGCAAGTGGA 59.043 50.000 0.00 0.00 0.00 4.02
286 287 1.338973 AGTACGTTCGAGCAAGTGGAA 59.661 47.619 0.00 0.00 0.00 3.53
287 288 1.719780 GTACGTTCGAGCAAGTGGAAG 59.280 52.381 0.00 0.00 0.00 3.46
288 289 0.387929 ACGTTCGAGCAAGTGGAAGA 59.612 50.000 0.00 0.00 0.00 2.87
289 290 1.063806 CGTTCGAGCAAGTGGAAGAG 58.936 55.000 0.00 0.00 0.00 2.85
290 291 0.793250 GTTCGAGCAAGTGGAAGAGC 59.207 55.000 0.00 0.00 0.00 4.09
291 292 0.392706 TTCGAGCAAGTGGAAGAGCA 59.607 50.000 0.00 0.00 0.00 4.26
292 293 0.319900 TCGAGCAAGTGGAAGAGCAC 60.320 55.000 0.00 0.00 0.00 4.40
293 294 0.320247 CGAGCAAGTGGAAGAGCACT 60.320 55.000 0.00 0.00 0.00 4.40
294 295 1.067565 CGAGCAAGTGGAAGAGCACTA 60.068 52.381 0.00 0.00 0.00 2.74
295 296 2.615869 GAGCAAGTGGAAGAGCACTAG 58.384 52.381 0.00 0.00 0.00 2.57
296 297 1.974236 AGCAAGTGGAAGAGCACTAGT 59.026 47.619 0.00 0.00 0.00 2.57
297 298 2.370189 AGCAAGTGGAAGAGCACTAGTT 59.630 45.455 0.00 0.00 0.00 2.24
298 299 2.739379 GCAAGTGGAAGAGCACTAGTTC 59.261 50.000 0.00 0.00 0.00 3.01
299 300 3.556004 GCAAGTGGAAGAGCACTAGTTCT 60.556 47.826 0.00 0.00 36.84 3.01
300 301 4.636249 CAAGTGGAAGAGCACTAGTTCTT 58.364 43.478 9.16 9.16 46.30 2.52
301 302 4.264460 AGTGGAAGAGCACTAGTTCTTG 57.736 45.455 13.37 0.00 44.09 3.02
308 309 1.454201 GCACTAGTTCTTGCTTCCCC 58.546 55.000 0.00 0.00 35.74 4.81
309 310 1.003696 GCACTAGTTCTTGCTTCCCCT 59.996 52.381 0.00 0.00 35.74 4.79
310 311 2.937433 GCACTAGTTCTTGCTTCCCCTC 60.937 54.545 0.00 0.00 35.74 4.30
311 312 2.569404 CACTAGTTCTTGCTTCCCCTCT 59.431 50.000 0.00 0.00 0.00 3.69
312 313 2.835156 ACTAGTTCTTGCTTCCCCTCTC 59.165 50.000 0.00 0.00 0.00 3.20
313 314 2.037385 AGTTCTTGCTTCCCCTCTCT 57.963 50.000 0.00 0.00 0.00 3.10
314 315 3.191888 AGTTCTTGCTTCCCCTCTCTA 57.808 47.619 0.00 0.00 0.00 2.43
315 316 3.103742 AGTTCTTGCTTCCCCTCTCTAG 58.896 50.000 0.00 0.00 0.00 2.43
316 317 3.100671 GTTCTTGCTTCCCCTCTCTAGA 58.899 50.000 0.00 0.00 0.00 2.43
317 318 3.697190 TCTTGCTTCCCCTCTCTAGAT 57.303 47.619 0.00 0.00 0.00 1.98
318 319 4.816048 TCTTGCTTCCCCTCTCTAGATA 57.184 45.455 0.00 0.00 0.00 1.98
319 320 4.735369 TCTTGCTTCCCCTCTCTAGATAG 58.265 47.826 0.00 0.00 0.00 2.08
320 321 4.417183 TCTTGCTTCCCCTCTCTAGATAGA 59.583 45.833 6.71 0.00 0.00 1.98
321 322 5.075761 TCTTGCTTCCCCTCTCTAGATAGAT 59.924 44.000 6.71 0.00 0.00 1.98
322 323 4.671831 TGCTTCCCCTCTCTAGATAGATG 58.328 47.826 6.71 0.00 0.00 2.90
323 324 4.023291 GCTTCCCCTCTCTAGATAGATGG 58.977 52.174 6.71 6.94 32.65 3.51
324 325 4.264172 GCTTCCCCTCTCTAGATAGATGGA 60.264 50.000 6.71 8.91 34.23 3.41
325 326 4.938575 TCCCCTCTCTAGATAGATGGAC 57.061 50.000 6.71 0.00 34.23 4.02
326 327 4.252010 TCCCCTCTCTAGATAGATGGACA 58.748 47.826 6.71 0.00 34.23 4.02
351 352 2.202623 GGTGTGCTCCTACGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
388 389 6.202516 CAAGAAGTTTGTTCTTGGTTACCA 57.797 37.500 16.43 0.00 47.00 3.25
390 391 5.506708 AGAAGTTTGTTCTTGGTTACCACT 58.493 37.500 2.39 0.00 30.78 4.00
392 393 4.850680 AGTTTGTTCTTGGTTACCACTCA 58.149 39.130 2.39 0.00 30.78 3.41
395 396 4.223556 TGTTCTTGGTTACCACTCACAA 57.776 40.909 2.39 0.00 30.78 3.33
396 397 4.196193 TGTTCTTGGTTACCACTCACAAG 58.804 43.478 2.39 0.00 39.76 3.16
397 398 4.196971 GTTCTTGGTTACCACTCACAAGT 58.803 43.478 2.39 0.00 39.49 3.16
398 399 4.497291 TCTTGGTTACCACTCACAAGTT 57.503 40.909 2.39 0.00 39.49 2.66
399 400 4.448210 TCTTGGTTACCACTCACAAGTTC 58.552 43.478 2.39 0.00 39.49 3.01
400 401 3.202829 TGGTTACCACTCACAAGTTCC 57.797 47.619 0.00 0.00 31.71 3.62
401 402 2.506231 TGGTTACCACTCACAAGTTCCA 59.494 45.455 0.00 0.00 31.71 3.53
402 403 3.137544 TGGTTACCACTCACAAGTTCCAT 59.862 43.478 0.00 0.00 31.71 3.41
404 405 4.505039 GGTTACCACTCACAAGTTCCATCT 60.505 45.833 0.00 0.00 31.71 2.90
405 406 3.409026 ACCACTCACAAGTTCCATCTC 57.591 47.619 0.00 0.00 31.71 2.75
406 407 2.039084 ACCACTCACAAGTTCCATCTCC 59.961 50.000 0.00 0.00 31.71 3.71
407 408 2.616510 CCACTCACAAGTTCCATCTCCC 60.617 54.545 0.00 0.00 31.71 4.30
408 409 1.276421 ACTCACAAGTTCCATCTCCCG 59.724 52.381 0.00 0.00 28.74 5.14
409 410 1.550524 CTCACAAGTTCCATCTCCCGA 59.449 52.381 0.00 0.00 0.00 5.14
410 411 1.550524 TCACAAGTTCCATCTCCCGAG 59.449 52.381 0.00 0.00 0.00 4.63
411 412 0.250513 ACAAGTTCCATCTCCCGAGC 59.749 55.000 0.00 0.00 0.00 5.03
412 413 0.250234 CAAGTTCCATCTCCCGAGCA 59.750 55.000 0.00 0.00 0.00 4.26
413 414 1.134280 CAAGTTCCATCTCCCGAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
414 415 0.467384 AGTTCCATCTCCCGAGCATG 59.533 55.000 0.00 0.00 0.00 4.06
415 416 0.533755 GTTCCATCTCCCGAGCATGG 60.534 60.000 13.02 13.02 37.41 3.66
416 417 0.982852 TTCCATCTCCCGAGCATGGT 60.983 55.000 16.25 0.00 37.38 3.55
417 418 0.982852 TCCATCTCCCGAGCATGGTT 60.983 55.000 16.25 0.00 37.38 3.67
418 419 0.533755 CCATCTCCCGAGCATGGTTC 60.534 60.000 0.00 0.00 34.40 3.62
419 420 0.467384 CATCTCCCGAGCATGGTTCT 59.533 55.000 0.00 0.00 0.00 3.01
420 421 0.755686 ATCTCCCGAGCATGGTTCTC 59.244 55.000 0.00 0.00 0.00 2.87
421 422 1.144936 CTCCCGAGCATGGTTCTCC 59.855 63.158 0.00 0.00 0.00 3.71
422 423 1.306141 TCCCGAGCATGGTTCTCCT 60.306 57.895 0.00 0.00 34.23 3.69
433 434 1.312815 GGTTCTCCTACCATGCATGC 58.687 55.000 21.69 11.82 38.12 4.06
470 471 2.697751 ACTGACTTGAAGCTCACTCACT 59.302 45.455 0.00 0.00 0.00 3.41
472 473 2.695147 TGACTTGAAGCTCACTCACTCA 59.305 45.455 0.00 0.00 0.00 3.41
473 474 3.056304 GACTTGAAGCTCACTCACTCAC 58.944 50.000 0.00 0.00 0.00 3.51
474 475 2.057316 CTTGAAGCTCACTCACTCACG 58.943 52.381 0.00 0.00 0.00 4.35
475 476 1.032794 TGAAGCTCACTCACTCACGT 58.967 50.000 0.00 0.00 0.00 4.49
507 508 0.687920 TGGCACAAGGAACACCGATA 59.312 50.000 0.00 0.00 31.92 2.92
512 513 3.198068 CACAAGGAACACCGATAGATGG 58.802 50.000 0.00 0.00 29.14 3.51
536 537 2.433664 GCGAACCACCCCTACGTG 60.434 66.667 0.00 0.00 0.00 4.49
574 575 3.365265 GCTTCACCCACGGCCTTG 61.365 66.667 1.29 1.29 0.00 3.61
587 588 2.564721 GCCTTGTTCCCACAGCACC 61.565 63.158 0.00 0.00 33.22 5.01
588 589 1.152777 CCTTGTTCCCACAGCACCA 60.153 57.895 0.00 0.00 33.22 4.17
601 609 1.961277 GCACCACGTTCCTGTCCAG 60.961 63.158 0.00 0.00 0.00 3.86
639 647 1.750206 CCGCATTTTCCATCCATCACA 59.250 47.619 0.00 0.00 0.00 3.58
662 670 5.062558 CACAAGTCCTTTTTGCTTCAACAAG 59.937 40.000 0.00 0.00 32.80 3.16
701 709 5.164606 TCGCACCTAAACAAAGAAAGAAC 57.835 39.130 0.00 0.00 0.00 3.01
856 864 1.883084 CACCTTACCGCGCCATCTC 60.883 63.158 0.00 0.00 0.00 2.75
857 865 2.355986 ACCTTACCGCGCCATCTCA 61.356 57.895 0.00 0.00 0.00 3.27
858 866 1.883084 CCTTACCGCGCCATCTCAC 60.883 63.158 0.00 0.00 0.00 3.51
859 867 2.202690 TTACCGCGCCATCTCACG 60.203 61.111 0.00 0.00 0.00 4.35
865 873 4.758251 CGCCATCTCACGCACCCA 62.758 66.667 0.00 0.00 0.00 4.51
866 874 2.359850 GCCATCTCACGCACCCAA 60.360 61.111 0.00 0.00 0.00 4.12
867 875 2.401766 GCCATCTCACGCACCCAAG 61.402 63.158 0.00 0.00 0.00 3.61
868 876 2.401766 CCATCTCACGCACCCAAGC 61.402 63.158 0.00 0.00 0.00 4.01
941 952 0.471617 CCCTCCACCACCAGATCATC 59.528 60.000 0.00 0.00 0.00 2.92
942 953 1.206878 CCTCCACCACCAGATCATCA 58.793 55.000 0.00 0.00 0.00 3.07
943 954 1.773052 CCTCCACCACCAGATCATCAT 59.227 52.381 0.00 0.00 0.00 2.45
944 955 2.224475 CCTCCACCACCAGATCATCATC 60.224 54.545 0.00 0.00 0.00 2.92
945 956 2.436911 CTCCACCACCAGATCATCATCA 59.563 50.000 0.00 0.00 0.00 3.07
946 957 2.171237 TCCACCACCAGATCATCATCAC 59.829 50.000 0.00 0.00 0.00 3.06
947 958 2.569059 CACCACCAGATCATCATCACC 58.431 52.381 0.00 0.00 0.00 4.02
948 959 1.139654 ACCACCAGATCATCATCACCG 59.860 52.381 0.00 0.00 0.00 4.94
949 960 1.224075 CACCAGATCATCATCACCGC 58.776 55.000 0.00 0.00 0.00 5.68
1206 1217 1.170290 ACAAGCGCCACAAAGGTACC 61.170 55.000 2.29 2.73 40.61 3.34
1207 1218 1.602605 AAGCGCCACAAAGGTACCC 60.603 57.895 8.74 0.00 40.61 3.69
1230 1258 2.507484 CCACATTGGTTCAGAAGCAGA 58.493 47.619 14.53 7.28 40.38 4.26
1237 1265 3.995199 TGGTTCAGAAGCAGACAGTTAG 58.005 45.455 11.11 0.00 34.36 2.34
1238 1266 3.641436 TGGTTCAGAAGCAGACAGTTAGA 59.359 43.478 11.11 0.00 34.36 2.10
1239 1267 4.241681 GGTTCAGAAGCAGACAGTTAGAG 58.758 47.826 7.51 0.00 0.00 2.43
1389 1417 1.004440 GAAGCCTCACGAGCCTGTT 60.004 57.895 0.00 0.00 0.00 3.16
1392 1420 2.266055 CCTCACGAGCCTGTTCCC 59.734 66.667 0.00 0.00 0.00 3.97
1418 1446 0.308376 GTCTACTCGGTGAGATCGGC 59.692 60.000 0.00 0.00 33.32 5.54
1574 1610 3.414700 CGGAAGCGGTCAGTGCAC 61.415 66.667 9.40 9.40 33.85 4.57
1656 1693 0.249911 AAGAGGAGTTCGTGTGGTGC 60.250 55.000 0.00 0.00 0.00 5.01
1790 1827 2.551270 CTCAACCGCGACAACAGC 59.449 61.111 8.23 0.00 0.00 4.40
1847 1887 2.124695 CTGTAAGCCCCGCCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
1856 1896 2.671619 CCGCCTTCCTCGCCAAAA 60.672 61.111 0.00 0.00 0.00 2.44
1881 1921 3.906008 CAGTTCGAATTTGCTAACCAACG 59.094 43.478 0.00 0.00 31.97 4.10
1882 1922 3.562557 AGTTCGAATTTGCTAACCAACGT 59.437 39.130 0.00 0.00 31.97 3.99
1883 1923 4.751098 AGTTCGAATTTGCTAACCAACGTA 59.249 37.500 0.00 0.00 31.97 3.57
1884 1924 4.650545 TCGAATTTGCTAACCAACGTAC 57.349 40.909 0.00 0.00 31.97 3.67
1913 1958 2.511600 GGTACTCATTGCGCGCCT 60.512 61.111 30.77 13.72 0.00 5.52
2987 3245 3.823330 ATCGACCTCCACGACCGC 61.823 66.667 0.00 0.00 42.37 5.68
3026 3298 0.529378 TCTTCTTCGACGTAAGCCCC 59.471 55.000 0.00 0.00 45.62 5.80
3057 3329 4.876107 TCTCACACCTTCTGTTTCACTTTC 59.124 41.667 0.00 0.00 0.00 2.62
3058 3330 4.584874 TCACACCTTCTGTTTCACTTTCA 58.415 39.130 0.00 0.00 0.00 2.69
3059 3331 5.192927 TCACACCTTCTGTTTCACTTTCAT 58.807 37.500 0.00 0.00 0.00 2.57
3061 3333 5.973565 CACACCTTCTGTTTCACTTTCATTC 59.026 40.000 0.00 0.00 0.00 2.67
3062 3334 5.067805 ACACCTTCTGTTTCACTTTCATTCC 59.932 40.000 0.00 0.00 0.00 3.01
3063 3335 4.275936 ACCTTCTGTTTCACTTTCATTCCG 59.724 41.667 0.00 0.00 0.00 4.30
3065 3337 5.008613 CCTTCTGTTTCACTTTCATTCCGAA 59.991 40.000 0.00 0.00 0.00 4.30
3084 3356 3.197790 CGTTGGCCCGAGCTGATG 61.198 66.667 0.00 0.00 39.73 3.07
3085 3357 2.268920 GTTGGCCCGAGCTGATGA 59.731 61.111 0.00 0.00 39.73 2.92
3095 3367 0.381089 GAGCTGATGAATGCTGTGGC 59.619 55.000 0.00 0.00 39.91 5.01
3110 3382 4.622456 GGCGTGGCGTTGTGGTTG 62.622 66.667 0.00 0.00 0.00 3.77
3522 3806 1.067283 CGCAGAAGAGCTTCCAGAAGA 60.067 52.381 11.57 0.00 40.79 2.87
3691 3977 5.574443 GCAAAGAGGTAAATCATTCAGTTGC 59.426 40.000 0.00 0.00 0.00 4.17
3693 3979 7.373493 CAAAGAGGTAAATCATTCAGTTGCTT 58.627 34.615 0.00 0.00 0.00 3.91
3837 4146 0.391130 TTCGTGGAGCTTCCCATTCG 60.391 55.000 0.00 0.00 38.66 3.34
3862 4171 8.977505 CGTGATTTTTGACTAACAATCCATTTT 58.022 29.630 0.00 0.00 38.36 1.82
3982 4322 2.675423 TCCGTCTACTGCACGCCT 60.675 61.111 0.00 0.00 35.87 5.52
4251 4594 1.335132 ATCATCCCCACGGTAAGCGT 61.335 55.000 0.00 0.00 0.00 5.07
4255 4598 2.030958 CCCCACGGTAAGCGTTCAC 61.031 63.158 0.00 0.00 0.00 3.18
4268 4611 2.354821 AGCGTTCACCACTTCTTTCAAC 59.645 45.455 0.00 0.00 0.00 3.18
4932 5372 2.704572 ACAGTGCTGATTGACCTTAGC 58.295 47.619 6.17 0.00 36.72 3.09
4949 5389 2.780643 CTGTCAATGGCTCGCACG 59.219 61.111 0.00 0.00 0.00 5.34
5078 5518 8.836413 GTTCAGGACATTATATTCGAATGGAAA 58.164 33.333 20.87 11.67 38.39 3.13
5099 5539 4.825546 AGACACTGTTTCTGCATTTCTG 57.174 40.909 0.00 0.00 0.00 3.02
5118 5558 7.728580 TTTCTGTCGTTACATTTTTGTGTTC 57.271 32.000 0.00 0.00 34.37 3.18
5139 5579 1.614996 CAACTTGGCATACACCACCA 58.385 50.000 0.00 0.00 40.19 4.17
5146 5586 2.166829 GGCATACACCACCACATCAAA 58.833 47.619 0.00 0.00 0.00 2.69
5150 5590 4.202010 GCATACACCACCACATCAAATACC 60.202 45.833 0.00 0.00 0.00 2.73
5257 5706 8.748582 GTCTTACAAAAACAAAATAGGAAACCG 58.251 33.333 0.00 0.00 0.00 4.44
5278 5727 4.438336 CCGAGTCTTAACTACGCATCTCAA 60.438 45.833 0.00 0.00 35.28 3.02
5292 5741 4.260990 CGCATCTCAACCTACTACAGAGAG 60.261 50.000 0.00 0.00 38.58 3.20
5346 5797 5.350914 CACAACTTTCTCTCTAGCATCCAAG 59.649 44.000 0.00 0.00 0.00 3.61
5353 5804 7.904558 TTCTCTCTAGCATCCAAGATCTAAA 57.095 36.000 0.00 0.00 0.00 1.85
5359 5810 3.457380 AGCATCCAAGATCTAAAGCCTGA 59.543 43.478 0.00 0.00 0.00 3.86
5388 5840 0.961019 TTGATCCAGCACCAGCAAAC 59.039 50.000 0.00 0.00 45.49 2.93
5392 5844 0.395586 TCCAGCACCAGCAAACAAGT 60.396 50.000 0.00 0.00 45.49 3.16
5478 5931 1.623542 AAGCGGGGCCGTAGAGAAAT 61.624 55.000 0.00 0.00 42.09 2.17
5480 5933 1.227556 CGGGGCCGTAGAGAAATGG 60.228 63.158 0.00 0.00 34.35 3.16
5497 5950 0.662619 TGGCAGAGAAAACAACGCAG 59.337 50.000 0.00 0.00 0.00 5.18
5498 5951 0.661483 GGCAGAGAAAACAACGCAGC 60.661 55.000 0.00 0.00 0.00 5.25
5536 5991 1.893919 AAGTCGGCCTTCCAGAGAGC 61.894 60.000 0.00 0.00 0.00 4.09
5644 6100 1.067295 TCCAACCTGCTTCACTCCAT 58.933 50.000 0.00 0.00 0.00 3.41
5647 6103 0.036010 AACCTGCTTCACTCCATCCG 60.036 55.000 0.00 0.00 0.00 4.18
5651 6107 2.109126 GCTTCACTCCATCCGCCAC 61.109 63.158 0.00 0.00 0.00 5.01
5695 6155 9.153721 GTTTTCTGCAAAATATTCCAATCATGA 57.846 29.630 0.00 0.00 33.98 3.07
5760 6220 6.644592 TCCGCCTTGTTATTTTCAAAAATCAG 59.355 34.615 4.07 0.00 39.24 2.90
5795 6255 2.965147 CTCCAAAGGGTCCAACAAATGT 59.035 45.455 0.00 0.00 34.93 2.71
5827 6288 5.246429 CCCTACCATCACTATACCTCTTTCC 59.754 48.000 0.00 0.00 0.00 3.13
5861 6322 8.442384 CAAATTTTTAACCCCAAAATCTCATCG 58.558 33.333 0.00 0.00 33.56 3.84
5876 6337 4.938080 TCTCATCGCAGAATCTAGGTTTC 58.062 43.478 0.00 0.00 43.58 2.78
5877 6338 4.054671 CTCATCGCAGAATCTAGGTTTCC 58.945 47.826 0.00 0.00 43.58 3.13
5888 6349 5.622346 ATCTAGGTTTCCAGGAATGTCTC 57.378 43.478 1.58 0.00 0.00 3.36
5889 6350 3.775316 TCTAGGTTTCCAGGAATGTCTCC 59.225 47.826 1.58 1.74 45.81 3.71
5896 6357 2.040278 TCCAGGAATGTCTCCCAAGTTG 59.960 50.000 0.00 0.00 46.81 3.16
5907 6368 4.518970 GTCTCCCAAGTTGAAAGCACATTA 59.481 41.667 3.87 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.380004 CACAAAAGTGGACTAAACAGCCA 59.620 43.478 0.00 0.00 0.00 4.75
1 2 3.964909 CACAAAAGTGGACTAAACAGCC 58.035 45.455 0.00 0.00 0.00 4.85
13 14 4.863152 CTTTTCAAAGCCCACAAAAGTG 57.137 40.909 0.00 0.00 33.15 3.16
25 26 5.738118 TTTTCCATGCAAGCTTTTCAAAG 57.262 34.783 0.00 0.00 39.03 2.77
49 50 9.793259 TCTATTAAGAACCACAAAACTCATCTT 57.207 29.630 0.00 0.00 0.00 2.40
50 51 9.965902 ATCTATTAAGAACCACAAAACTCATCT 57.034 29.630 0.00 0.00 34.73 2.90
51 52 9.994432 CATCTATTAAGAACCACAAAACTCATC 57.006 33.333 0.00 0.00 34.73 2.92
52 53 8.960591 CCATCTATTAAGAACCACAAAACTCAT 58.039 33.333 0.00 0.00 34.73 2.90
53 54 7.393234 CCCATCTATTAAGAACCACAAAACTCA 59.607 37.037 0.00 0.00 34.73 3.41
54 55 7.610305 TCCCATCTATTAAGAACCACAAAACTC 59.390 37.037 0.00 0.00 34.73 3.01
55 56 7.393515 GTCCCATCTATTAAGAACCACAAAACT 59.606 37.037 0.00 0.00 34.73 2.66
56 57 7.393515 AGTCCCATCTATTAAGAACCACAAAAC 59.606 37.037 0.00 0.00 34.73 2.43
57 58 7.466804 AGTCCCATCTATTAAGAACCACAAAA 58.533 34.615 0.00 0.00 34.73 2.44
58 59 7.027874 AGTCCCATCTATTAAGAACCACAAA 57.972 36.000 0.00 0.00 34.73 2.83
59 60 6.636454 AGTCCCATCTATTAAGAACCACAA 57.364 37.500 0.00 0.00 34.73 3.33
60 61 7.743116 TTAGTCCCATCTATTAAGAACCACA 57.257 36.000 0.00 0.00 34.73 4.17
61 62 8.211629 ACATTAGTCCCATCTATTAAGAACCAC 58.788 37.037 0.00 0.00 34.73 4.16
62 63 8.331931 ACATTAGTCCCATCTATTAAGAACCA 57.668 34.615 0.00 0.00 34.73 3.67
63 64 9.628500 AAACATTAGTCCCATCTATTAAGAACC 57.372 33.333 0.00 0.00 34.73 3.62
68 69 9.184523 CCACAAAACATTAGTCCCATCTATTAA 57.815 33.333 0.00 0.00 0.00 1.40
69 70 8.333235 ACCACAAAACATTAGTCCCATCTATTA 58.667 33.333 0.00 0.00 0.00 0.98
70 71 7.182060 ACCACAAAACATTAGTCCCATCTATT 58.818 34.615 0.00 0.00 0.00 1.73
71 72 6.731467 ACCACAAAACATTAGTCCCATCTAT 58.269 36.000 0.00 0.00 0.00 1.98
72 73 6.134535 ACCACAAAACATTAGTCCCATCTA 57.865 37.500 0.00 0.00 0.00 1.98
73 74 4.998051 ACCACAAAACATTAGTCCCATCT 58.002 39.130 0.00 0.00 0.00 2.90
74 75 5.336451 GGAACCACAAAACATTAGTCCCATC 60.336 44.000 0.00 0.00 0.00 3.51
75 76 4.526650 GGAACCACAAAACATTAGTCCCAT 59.473 41.667 0.00 0.00 0.00 4.00
76 77 3.892588 GGAACCACAAAACATTAGTCCCA 59.107 43.478 0.00 0.00 0.00 4.37
77 78 4.514781 GGAACCACAAAACATTAGTCCC 57.485 45.455 0.00 0.00 0.00 4.46
94 95 4.098155 AGGAAAGTAGAGAGGAAGGGAAC 58.902 47.826 0.00 0.00 0.00 3.62
95 96 4.421574 AGGAAAGTAGAGAGGAAGGGAA 57.578 45.455 0.00 0.00 0.00 3.97
96 97 4.325974 GGTAGGAAAGTAGAGAGGAAGGGA 60.326 50.000 0.00 0.00 0.00 4.20
97 98 3.962063 GGTAGGAAAGTAGAGAGGAAGGG 59.038 52.174 0.00 0.00 0.00 3.95
98 99 4.611367 TGGTAGGAAAGTAGAGAGGAAGG 58.389 47.826 0.00 0.00 0.00 3.46
99 100 6.800072 ATTGGTAGGAAAGTAGAGAGGAAG 57.200 41.667 0.00 0.00 0.00 3.46
100 101 7.230913 CGATATTGGTAGGAAAGTAGAGAGGAA 59.769 40.741 0.00 0.00 0.00 3.36
101 102 6.715718 CGATATTGGTAGGAAAGTAGAGAGGA 59.284 42.308 0.00 0.00 0.00 3.71
102 103 6.570764 GCGATATTGGTAGGAAAGTAGAGAGG 60.571 46.154 0.00 0.00 0.00 3.69
103 104 6.383415 GCGATATTGGTAGGAAAGTAGAGAG 58.617 44.000 0.00 0.00 0.00 3.20
104 105 5.243283 GGCGATATTGGTAGGAAAGTAGAGA 59.757 44.000 0.00 0.00 0.00 3.10
105 106 5.244178 AGGCGATATTGGTAGGAAAGTAGAG 59.756 44.000 0.00 0.00 0.00 2.43
106 107 5.010719 CAGGCGATATTGGTAGGAAAGTAGA 59.989 44.000 0.00 0.00 0.00 2.59
107 108 5.230942 CAGGCGATATTGGTAGGAAAGTAG 58.769 45.833 0.00 0.00 0.00 2.57
108 109 4.502604 GCAGGCGATATTGGTAGGAAAGTA 60.503 45.833 0.00 0.00 0.00 2.24
109 110 3.744530 GCAGGCGATATTGGTAGGAAAGT 60.745 47.826 0.00 0.00 0.00 2.66
110 111 2.808543 GCAGGCGATATTGGTAGGAAAG 59.191 50.000 0.00 0.00 0.00 2.62
111 112 2.438021 AGCAGGCGATATTGGTAGGAAA 59.562 45.455 0.00 0.00 0.00 3.13
112 113 2.047061 AGCAGGCGATATTGGTAGGAA 58.953 47.619 0.00 0.00 0.00 3.36
113 114 1.717032 AGCAGGCGATATTGGTAGGA 58.283 50.000 0.00 0.00 0.00 2.94
114 115 2.550830 AAGCAGGCGATATTGGTAGG 57.449 50.000 0.00 0.00 0.00 3.18
115 116 4.521130 TCTAAGCAGGCGATATTGGTAG 57.479 45.455 0.00 0.00 0.00 3.18
116 117 4.380550 CGATCTAAGCAGGCGATATTGGTA 60.381 45.833 0.00 0.00 0.00 3.25
117 118 3.615110 CGATCTAAGCAGGCGATATTGGT 60.615 47.826 0.00 0.00 0.00 3.67
118 119 2.926200 CGATCTAAGCAGGCGATATTGG 59.074 50.000 0.00 0.00 0.00 3.16
119 120 3.838120 TCGATCTAAGCAGGCGATATTG 58.162 45.455 0.00 0.00 0.00 1.90
120 121 4.521130 TTCGATCTAAGCAGGCGATATT 57.479 40.909 0.00 0.00 32.03 1.28
121 122 4.238514 GTTTCGATCTAAGCAGGCGATAT 58.761 43.478 0.00 0.00 32.03 1.63
122 123 3.067601 TGTTTCGATCTAAGCAGGCGATA 59.932 43.478 0.00 0.00 32.03 2.92
123 124 2.159099 TGTTTCGATCTAAGCAGGCGAT 60.159 45.455 0.00 0.00 32.03 4.58
124 125 1.203758 TGTTTCGATCTAAGCAGGCGA 59.796 47.619 0.00 0.00 0.00 5.54
125 126 1.640428 TGTTTCGATCTAAGCAGGCG 58.360 50.000 0.00 0.00 0.00 5.52
126 127 2.939103 ACATGTTTCGATCTAAGCAGGC 59.061 45.455 8.10 0.00 0.00 4.85
127 128 5.551760 AAACATGTTTCGATCTAAGCAGG 57.448 39.130 18.13 6.88 0.00 4.85
139 140 9.132521 CAGATCAAAGGTAATGAAACATGTTTC 57.867 33.333 34.41 34.41 46.71 2.78
140 141 8.641541 ACAGATCAAAGGTAATGAAACATGTTT 58.358 29.630 23.49 23.49 35.14 2.83
141 142 8.084073 CACAGATCAAAGGTAATGAAACATGTT 58.916 33.333 4.92 4.92 0.00 2.71
142 143 7.596494 CACAGATCAAAGGTAATGAAACATGT 58.404 34.615 0.00 0.00 0.00 3.21
143 144 6.529125 GCACAGATCAAAGGTAATGAAACATG 59.471 38.462 0.00 0.00 0.00 3.21
144 145 6.350445 GGCACAGATCAAAGGTAATGAAACAT 60.350 38.462 0.00 0.00 0.00 2.71
145 146 5.048083 GGCACAGATCAAAGGTAATGAAACA 60.048 40.000 0.00 0.00 0.00 2.83
146 147 5.402398 GGCACAGATCAAAGGTAATGAAAC 58.598 41.667 0.00 0.00 0.00 2.78
147 148 4.462483 GGGCACAGATCAAAGGTAATGAAA 59.538 41.667 0.00 0.00 0.00 2.69
148 149 4.016444 GGGCACAGATCAAAGGTAATGAA 58.984 43.478 0.00 0.00 0.00 2.57
149 150 3.010027 TGGGCACAGATCAAAGGTAATGA 59.990 43.478 0.00 0.00 0.00 2.57
150 151 3.355378 TGGGCACAGATCAAAGGTAATG 58.645 45.455 0.00 0.00 0.00 1.90
151 152 3.737559 TGGGCACAGATCAAAGGTAAT 57.262 42.857 0.00 0.00 0.00 1.89
152 153 3.153919 GTTGGGCACAGATCAAAGGTAA 58.846 45.455 0.00 0.00 0.00 2.85
153 154 2.790433 GTTGGGCACAGATCAAAGGTA 58.210 47.619 0.00 0.00 0.00 3.08
154 155 1.620822 GTTGGGCACAGATCAAAGGT 58.379 50.000 0.00 0.00 0.00 3.50
155 156 0.523072 CGTTGGGCACAGATCAAAGG 59.477 55.000 0.00 0.00 0.00 3.11
156 157 1.522668 TCGTTGGGCACAGATCAAAG 58.477 50.000 0.00 0.00 0.00 2.77
157 158 2.198827 ATCGTTGGGCACAGATCAAA 57.801 45.000 0.00 0.00 0.00 2.69
158 159 2.627945 GTATCGTTGGGCACAGATCAA 58.372 47.619 0.00 0.00 0.00 2.57
159 160 1.134521 GGTATCGTTGGGCACAGATCA 60.135 52.381 0.00 0.00 0.00 2.92
160 161 1.139058 AGGTATCGTTGGGCACAGATC 59.861 52.381 0.00 0.00 0.00 2.75
161 162 1.204146 AGGTATCGTTGGGCACAGAT 58.796 50.000 0.00 0.00 0.00 2.90
162 163 0.981183 AAGGTATCGTTGGGCACAGA 59.019 50.000 0.00 0.00 0.00 3.41
163 164 1.821216 AAAGGTATCGTTGGGCACAG 58.179 50.000 0.00 0.00 0.00 3.66
164 165 2.279935 AAAAGGTATCGTTGGGCACA 57.720 45.000 0.00 0.00 0.00 4.57
165 166 3.340928 AGTAAAAGGTATCGTTGGGCAC 58.659 45.455 0.00 0.00 0.00 5.01
166 167 3.602483 GAGTAAAAGGTATCGTTGGGCA 58.398 45.455 0.00 0.00 0.00 5.36
167 168 2.606272 CGAGTAAAAGGTATCGTTGGGC 59.394 50.000 0.00 0.00 0.00 5.36
168 169 2.606272 GCGAGTAAAAGGTATCGTTGGG 59.394 50.000 0.00 0.00 37.49 4.12
169 170 3.518590 AGCGAGTAAAAGGTATCGTTGG 58.481 45.455 0.00 0.00 37.49 3.77
170 171 3.550678 GGAGCGAGTAAAAGGTATCGTTG 59.449 47.826 0.00 0.00 37.49 4.10
171 172 3.733077 CGGAGCGAGTAAAAGGTATCGTT 60.733 47.826 0.00 0.00 37.49 3.85
172 173 2.223433 CGGAGCGAGTAAAAGGTATCGT 60.223 50.000 0.00 0.00 37.49 3.73
173 174 2.223433 ACGGAGCGAGTAAAAGGTATCG 60.223 50.000 0.00 0.00 38.19 2.92
174 175 3.433513 ACGGAGCGAGTAAAAGGTATC 57.566 47.619 0.00 0.00 0.00 2.24
175 176 4.581824 TCATACGGAGCGAGTAAAAGGTAT 59.418 41.667 0.00 0.00 0.00 2.73
176 177 3.947196 TCATACGGAGCGAGTAAAAGGTA 59.053 43.478 0.00 0.00 0.00 3.08
177 178 2.756760 TCATACGGAGCGAGTAAAAGGT 59.243 45.455 0.00 0.00 0.00 3.50
178 179 3.431922 TCATACGGAGCGAGTAAAAGG 57.568 47.619 0.00 0.00 0.00 3.11
179 180 5.968387 AAATCATACGGAGCGAGTAAAAG 57.032 39.130 0.00 0.00 0.00 2.27
180 181 7.037438 AGTTAAATCATACGGAGCGAGTAAAA 58.963 34.615 0.00 0.00 0.00 1.52
181 182 6.567050 AGTTAAATCATACGGAGCGAGTAAA 58.433 36.000 0.00 0.00 0.00 2.01
182 183 6.140303 AGTTAAATCATACGGAGCGAGTAA 57.860 37.500 0.00 0.00 0.00 2.24
183 184 5.762825 AGTTAAATCATACGGAGCGAGTA 57.237 39.130 0.00 0.00 0.00 2.59
184 185 4.650754 AGTTAAATCATACGGAGCGAGT 57.349 40.909 0.00 0.00 0.00 4.18
185 186 5.291128 ACAAAGTTAAATCATACGGAGCGAG 59.709 40.000 0.00 0.00 0.00 5.03
186 187 5.172934 ACAAAGTTAAATCATACGGAGCGA 58.827 37.500 0.00 0.00 0.00 4.93
187 188 5.464965 ACAAAGTTAAATCATACGGAGCG 57.535 39.130 0.00 0.00 0.00 5.03
215 216 9.866936 CAACTTTGTACTAGCGTTGTATTAAAA 57.133 29.630 10.90 0.00 32.52 1.52
216 217 8.497554 CCAACTTTGTACTAGCGTTGTATTAAA 58.502 33.333 15.02 0.00 34.66 1.52
217 218 7.871973 TCCAACTTTGTACTAGCGTTGTATTAA 59.128 33.333 15.02 0.00 34.66 1.40
218 219 7.377398 TCCAACTTTGTACTAGCGTTGTATTA 58.623 34.615 15.02 2.63 34.66 0.98
219 220 6.225318 TCCAACTTTGTACTAGCGTTGTATT 58.775 36.000 15.02 0.00 34.66 1.89
220 221 5.786311 TCCAACTTTGTACTAGCGTTGTAT 58.214 37.500 15.02 0.00 34.66 2.29
221 222 5.199024 TCCAACTTTGTACTAGCGTTGTA 57.801 39.130 15.02 3.37 34.66 2.41
222 223 4.062677 TCCAACTTTGTACTAGCGTTGT 57.937 40.909 15.02 0.00 34.66 3.32
223 224 4.688879 TGATCCAACTTTGTACTAGCGTTG 59.311 41.667 11.67 11.67 35.85 4.10
224 225 4.890088 TGATCCAACTTTGTACTAGCGTT 58.110 39.130 0.00 0.00 0.00 4.84
225 226 4.530710 TGATCCAACTTTGTACTAGCGT 57.469 40.909 0.00 0.00 0.00 5.07
226 227 5.352284 AGATGATCCAACTTTGTACTAGCG 58.648 41.667 0.00 0.00 0.00 4.26
227 228 8.894768 AATAGATGATCCAACTTTGTACTAGC 57.105 34.615 0.00 0.00 0.00 3.42
230 231 9.739276 TCAAAATAGATGATCCAACTTTGTACT 57.261 29.630 0.00 0.00 0.00 2.73
233 234 9.696917 GTTTCAAAATAGATGATCCAACTTTGT 57.303 29.630 0.00 0.00 0.00 2.83
234 235 8.853345 CGTTTCAAAATAGATGATCCAACTTTG 58.147 33.333 0.00 0.00 0.00 2.77
235 236 8.028938 CCGTTTCAAAATAGATGATCCAACTTT 58.971 33.333 0.00 0.00 0.00 2.66
236 237 7.393234 TCCGTTTCAAAATAGATGATCCAACTT 59.607 33.333 0.00 0.00 0.00 2.66
237 238 6.884295 TCCGTTTCAAAATAGATGATCCAACT 59.116 34.615 0.00 0.00 0.00 3.16
238 239 7.083875 TCCGTTTCAAAATAGATGATCCAAC 57.916 36.000 0.00 0.00 0.00 3.77
239 240 6.318648 CCTCCGTTTCAAAATAGATGATCCAA 59.681 38.462 0.00 0.00 0.00 3.53
240 241 5.822519 CCTCCGTTTCAAAATAGATGATCCA 59.177 40.000 0.00 0.00 0.00 3.41
241 242 5.239525 CCCTCCGTTTCAAAATAGATGATCC 59.760 44.000 0.00 0.00 0.00 3.36
242 243 6.055588 TCCCTCCGTTTCAAAATAGATGATC 58.944 40.000 0.00 0.00 0.00 2.92
243 244 6.001449 TCCCTCCGTTTCAAAATAGATGAT 57.999 37.500 0.00 0.00 0.00 2.45
244 245 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
245 246 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
246 247 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
247 248 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
248 249 4.565564 CGTACTCCCTCCGTTTCAAAATAG 59.434 45.833 0.00 0.00 0.00 1.73
249 250 4.021192 ACGTACTCCCTCCGTTTCAAAATA 60.021 41.667 0.00 0.00 0.00 1.40
250 251 3.244318 ACGTACTCCCTCCGTTTCAAAAT 60.244 43.478 0.00 0.00 0.00 1.82
251 252 2.102925 ACGTACTCCCTCCGTTTCAAAA 59.897 45.455 0.00 0.00 0.00 2.44
252 253 1.688197 ACGTACTCCCTCCGTTTCAAA 59.312 47.619 0.00 0.00 0.00 2.69
253 254 1.331214 ACGTACTCCCTCCGTTTCAA 58.669 50.000 0.00 0.00 0.00 2.69
254 255 1.270550 GAACGTACTCCCTCCGTTTCA 59.729 52.381 0.00 0.00 44.04 2.69
255 256 1.730446 CGAACGTACTCCCTCCGTTTC 60.730 57.143 0.00 0.00 44.04 2.78
256 257 0.242017 CGAACGTACTCCCTCCGTTT 59.758 55.000 0.00 0.00 44.04 3.60
257 258 0.606401 TCGAACGTACTCCCTCCGTT 60.606 55.000 0.00 0.00 46.38 4.44
258 259 1.003355 TCGAACGTACTCCCTCCGT 60.003 57.895 0.00 0.00 36.17 4.69
259 260 1.720301 CTCGAACGTACTCCCTCCG 59.280 63.158 0.00 0.00 0.00 4.63
260 261 1.310933 TGCTCGAACGTACTCCCTCC 61.311 60.000 0.00 0.00 0.00 4.30
261 262 0.524862 TTGCTCGAACGTACTCCCTC 59.475 55.000 0.00 0.00 0.00 4.30
262 263 0.526662 CTTGCTCGAACGTACTCCCT 59.473 55.000 0.00 0.00 0.00 4.20
263 264 0.243095 ACTTGCTCGAACGTACTCCC 59.757 55.000 0.00 0.00 0.00 4.30
264 265 1.337821 CACTTGCTCGAACGTACTCC 58.662 55.000 0.00 0.00 0.00 3.85
265 266 1.068748 TCCACTTGCTCGAACGTACTC 60.069 52.381 0.00 0.00 0.00 2.59
266 267 0.956633 TCCACTTGCTCGAACGTACT 59.043 50.000 0.00 0.00 0.00 2.73
267 268 1.719780 CTTCCACTTGCTCGAACGTAC 59.280 52.381 0.00 0.00 0.00 3.67
268 269 1.610038 TCTTCCACTTGCTCGAACGTA 59.390 47.619 0.00 0.00 0.00 3.57
269 270 0.387929 TCTTCCACTTGCTCGAACGT 59.612 50.000 0.00 0.00 0.00 3.99
270 271 1.063806 CTCTTCCACTTGCTCGAACG 58.936 55.000 0.00 0.00 0.00 3.95
271 272 0.793250 GCTCTTCCACTTGCTCGAAC 59.207 55.000 0.00 0.00 0.00 3.95
272 273 0.392706 TGCTCTTCCACTTGCTCGAA 59.607 50.000 0.00 0.00 0.00 3.71
273 274 0.319900 GTGCTCTTCCACTTGCTCGA 60.320 55.000 0.00 0.00 33.02 4.04
274 275 0.320247 AGTGCTCTTCCACTTGCTCG 60.320 55.000 0.00 0.00 43.19 5.03
275 276 2.028567 ACTAGTGCTCTTCCACTTGCTC 60.029 50.000 0.00 0.00 43.19 4.26
276 277 1.974236 ACTAGTGCTCTTCCACTTGCT 59.026 47.619 0.00 0.00 43.19 3.91
277 278 2.464157 ACTAGTGCTCTTCCACTTGC 57.536 50.000 0.00 0.00 43.19 4.01
278 279 4.264460 AGAACTAGTGCTCTTCCACTTG 57.736 45.455 0.00 1.56 43.19 3.16
279 280 4.636249 CAAGAACTAGTGCTCTTCCACTT 58.364 43.478 3.08 0.00 43.19 3.16
280 281 3.556004 GCAAGAACTAGTGCTCTTCCACT 60.556 47.826 3.08 0.23 46.98 4.00
281 282 2.739379 GCAAGAACTAGTGCTCTTCCAC 59.261 50.000 3.08 0.00 37.78 4.02
282 283 3.045601 GCAAGAACTAGTGCTCTTCCA 57.954 47.619 3.08 0.00 37.78 3.53
289 290 1.003696 AGGGGAAGCAAGAACTAGTGC 59.996 52.381 0.00 0.00 41.22 4.40
290 291 2.569404 AGAGGGGAAGCAAGAACTAGTG 59.431 50.000 0.00 0.00 0.00 2.74
291 292 2.835156 GAGAGGGGAAGCAAGAACTAGT 59.165 50.000 0.00 0.00 0.00 2.57
292 293 3.103742 AGAGAGGGGAAGCAAGAACTAG 58.896 50.000 0.00 0.00 0.00 2.57
293 294 3.191888 AGAGAGGGGAAGCAAGAACTA 57.808 47.619 0.00 0.00 0.00 2.24
294 295 2.037385 AGAGAGGGGAAGCAAGAACT 57.963 50.000 0.00 0.00 0.00 3.01
295 296 3.100671 TCTAGAGAGGGGAAGCAAGAAC 58.899 50.000 0.00 0.00 0.00 3.01
296 297 3.474798 TCTAGAGAGGGGAAGCAAGAA 57.525 47.619 0.00 0.00 0.00 2.52
297 298 3.697190 ATCTAGAGAGGGGAAGCAAGA 57.303 47.619 0.00 0.00 0.00 3.02
298 299 4.735369 TCTATCTAGAGAGGGGAAGCAAG 58.265 47.826 14.25 0.00 0.00 4.01
299 300 4.816048 TCTATCTAGAGAGGGGAAGCAA 57.184 45.455 14.25 0.00 0.00 3.91
300 301 4.510024 CCATCTATCTAGAGAGGGGAAGCA 60.510 50.000 14.25 0.00 42.52 3.91
301 302 4.023291 CCATCTATCTAGAGAGGGGAAGC 58.977 52.174 14.25 0.00 42.52 3.86
302 303 5.222233 TGTCCATCTATCTAGAGAGGGGAAG 60.222 48.000 22.23 7.16 45.57 3.46
303 304 4.670247 TGTCCATCTATCTAGAGAGGGGAA 59.330 45.833 22.23 13.84 45.57 3.97
304 305 4.043561 GTGTCCATCTATCTAGAGAGGGGA 59.956 50.000 18.79 18.79 45.57 4.81
305 306 4.044065 AGTGTCCATCTATCTAGAGAGGGG 59.956 50.000 14.25 15.10 45.57 4.79
306 307 5.009631 CAGTGTCCATCTATCTAGAGAGGG 58.990 50.000 14.25 10.07 46.65 4.30
307 308 4.458989 GCAGTGTCCATCTATCTAGAGAGG 59.541 50.000 14.25 0.77 35.50 3.69
308 309 4.154015 CGCAGTGTCCATCTATCTAGAGAG 59.846 50.000 8.13 8.13 35.50 3.20
309 310 4.068599 CGCAGTGTCCATCTATCTAGAGA 58.931 47.826 0.00 0.00 35.50 3.10
310 311 3.818210 ACGCAGTGTCCATCTATCTAGAG 59.182 47.826 0.00 0.00 42.51 2.43
311 312 3.821748 ACGCAGTGTCCATCTATCTAGA 58.178 45.455 0.00 0.00 42.51 2.43
319 320 2.765250 ACACCGACGCAGTGTCCATC 62.765 60.000 8.57 0.00 45.13 3.51
320 321 2.867855 ACACCGACGCAGTGTCCAT 61.868 57.895 8.57 0.00 45.13 3.41
321 322 3.533105 ACACCGACGCAGTGTCCA 61.533 61.111 8.57 0.00 45.13 4.02
322 323 3.036084 CACACCGACGCAGTGTCC 61.036 66.667 8.57 0.00 45.13 4.02
323 324 3.702555 GCACACCGACGCAGTGTC 61.703 66.667 15.96 3.80 45.13 3.67
356 357 2.597455 ACAAACTTCTTGTCCCATGGG 58.403 47.619 26.30 26.30 0.00 4.00
385 386 2.039084 GGAGATGGAACTTGTGAGTGGT 59.961 50.000 0.00 0.00 35.91 4.16
388 389 1.276421 CGGGAGATGGAACTTGTGAGT 59.724 52.381 0.00 0.00 37.87 3.41
390 391 1.550524 CTCGGGAGATGGAACTTGTGA 59.449 52.381 0.00 0.00 38.80 3.58
392 393 0.250513 GCTCGGGAGATGGAACTTGT 59.749 55.000 0.00 0.00 38.80 3.16
395 396 0.467384 CATGCTCGGGAGATGGAACT 59.533 55.000 0.00 0.00 38.80 3.01
396 397 0.533755 CCATGCTCGGGAGATGGAAC 60.534 60.000 15.95 0.00 37.85 3.62
397 398 0.982852 ACCATGCTCGGGAGATGGAA 60.983 55.000 22.64 0.00 38.42 3.53
398 399 0.982852 AACCATGCTCGGGAGATGGA 60.983 55.000 22.64 0.00 38.42 3.41
399 400 0.533755 GAACCATGCTCGGGAGATGG 60.534 60.000 17.88 17.88 39.66 3.51
400 401 0.467384 AGAACCATGCTCGGGAGATG 59.533 55.000 0.00 1.33 38.80 2.90
401 402 0.755686 GAGAACCATGCTCGGGAGAT 59.244 55.000 0.00 0.00 38.80 2.75
402 403 1.330655 GGAGAACCATGCTCGGGAGA 61.331 60.000 0.00 0.00 35.97 3.71
404 405 0.032515 TAGGAGAACCATGCTCGGGA 60.033 55.000 0.00 0.00 38.94 5.14
405 406 0.105039 GTAGGAGAACCATGCTCGGG 59.895 60.000 0.00 0.00 38.94 5.14
406 407 0.105039 GGTAGGAGAACCATGCTCGG 59.895 60.000 0.00 0.00 39.50 4.63
407 408 0.824109 TGGTAGGAGAACCATGCTCG 59.176 55.000 0.00 0.00 44.68 5.03
414 415 1.312815 GCATGCATGGTAGGAGAACC 58.687 55.000 27.34 3.43 40.19 3.62
415 416 1.312815 GGCATGCATGGTAGGAGAAC 58.687 55.000 27.34 7.64 0.00 3.01
416 417 0.183492 GGGCATGCATGGTAGGAGAA 59.817 55.000 27.34 0.00 0.00 2.87
417 418 1.708993 GGGGCATGCATGGTAGGAGA 61.709 60.000 27.34 0.00 0.00 3.71
418 419 1.228367 GGGGCATGCATGGTAGGAG 60.228 63.158 27.34 0.91 0.00 3.69
419 420 1.362744 ATGGGGCATGCATGGTAGGA 61.363 55.000 27.34 0.00 0.00 2.94
420 421 0.470456 AATGGGGCATGCATGGTAGG 60.470 55.000 27.34 2.48 0.00 3.18
421 422 1.416243 AAATGGGGCATGCATGGTAG 58.584 50.000 27.34 2.89 0.00 3.18
422 423 2.763736 TAAATGGGGCATGCATGGTA 57.236 45.000 27.34 0.67 0.00 3.25
433 434 2.612212 GTCAGTGCGTGTATAAATGGGG 59.388 50.000 0.00 0.00 0.00 4.96
470 471 1.904865 AGGGTGAAGCCGTACGTGA 60.905 57.895 15.21 0.00 38.44 4.35
472 473 2.654877 CAGGGTGAAGCCGTACGT 59.345 61.111 15.21 0.00 38.44 3.57
473 474 2.125673 CCAGGGTGAAGCCGTACG 60.126 66.667 8.69 8.69 38.44 3.67
474 475 2.436115 GCCAGGGTGAAGCCGTAC 60.436 66.667 0.00 0.00 38.44 3.67
475 476 2.925706 TGCCAGGGTGAAGCCGTA 60.926 61.111 0.00 0.00 38.44 4.02
507 508 2.264794 GTTCGCGGTGACCCATCT 59.735 61.111 6.13 0.00 0.00 2.90
536 537 0.389948 AGCGGTGAATTGAGACGTCC 60.390 55.000 13.01 4.42 0.00 4.79
574 575 1.782028 GAACGTGGTGCTGTGGGAAC 61.782 60.000 0.00 0.00 0.00 3.62
587 588 1.197721 GAAATGCTGGACAGGAACGTG 59.802 52.381 0.00 0.00 30.94 4.49
588 589 1.523758 GAAATGCTGGACAGGAACGT 58.476 50.000 0.00 0.00 30.94 3.99
601 609 2.416027 GCGGAAAAGGAGAAGGAAATGC 60.416 50.000 0.00 0.00 0.00 3.56
639 647 4.799564 TGTTGAAGCAAAAAGGACTTGT 57.200 36.364 0.00 0.00 0.00 3.16
662 670 0.248215 CGATGGAAAATGCCGCAGTC 60.248 55.000 0.00 0.00 0.00 3.51
701 709 3.832237 AAGGCCTGCGTCTGGTGTG 62.832 63.158 5.69 0.00 0.00 3.82
856 864 1.308069 ATAGCTTGCTTGGGTGCGTG 61.308 55.000 0.00 0.00 35.36 5.34
857 865 0.251916 TATAGCTTGCTTGGGTGCGT 59.748 50.000 0.00 0.00 35.36 5.24
858 866 1.532868 GATATAGCTTGCTTGGGTGCG 59.467 52.381 0.00 0.00 35.36 5.34
859 867 2.291741 GTGATATAGCTTGCTTGGGTGC 59.708 50.000 0.00 0.00 0.00 5.01
860 868 2.880890 GGTGATATAGCTTGCTTGGGTG 59.119 50.000 0.00 0.00 0.00 4.61
861 869 2.780010 AGGTGATATAGCTTGCTTGGGT 59.220 45.455 0.00 0.00 31.87 4.51
862 870 3.144506 CAGGTGATATAGCTTGCTTGGG 58.855 50.000 0.00 0.00 34.17 4.12
863 871 2.551459 GCAGGTGATATAGCTTGCTTGG 59.449 50.000 0.00 0.00 34.17 3.61
864 872 3.474600 AGCAGGTGATATAGCTTGCTTG 58.525 45.455 0.00 0.00 37.73 4.01
865 873 3.853355 AGCAGGTGATATAGCTTGCTT 57.147 42.857 0.00 0.00 37.73 3.91
866 874 3.306641 GCTAGCAGGTGATATAGCTTGCT 60.307 47.826 10.63 16.10 46.90 3.91
867 875 2.999355 GCTAGCAGGTGATATAGCTTGC 59.001 50.000 10.63 0.00 45.27 4.01
868 876 3.260380 AGGCTAGCAGGTGATATAGCTTG 59.740 47.826 18.24 0.00 40.37 4.01
1128 1139 1.651730 GCGCTCGTACTCGTAGCAG 60.652 63.158 0.00 0.00 38.82 4.24
1206 1217 1.888512 CTTCTGAACCAATGTGGGTGG 59.111 52.381 0.00 0.00 37.76 4.61
1207 1218 1.270550 GCTTCTGAACCAATGTGGGTG 59.729 52.381 0.00 0.00 37.76 4.61
1230 1258 1.267121 ACCGTGGCATCTCTAACTGT 58.733 50.000 0.00 0.00 0.00 3.55
1237 1265 1.009829 GTGATGAACCGTGGCATCTC 58.990 55.000 13.02 7.94 41.08 2.75
1238 1266 0.324614 TGTGATGAACCGTGGCATCT 59.675 50.000 13.02 0.00 41.08 2.90
1239 1267 1.135689 GTTGTGATGAACCGTGGCATC 60.136 52.381 0.00 0.00 40.92 3.91
1308 1336 3.459063 CCGTCCTCTTCGTCCCCC 61.459 72.222 0.00 0.00 0.00 5.40
1389 1417 0.742281 CCGAGTAGACGTCGAAGGGA 60.742 60.000 10.46 0.00 39.92 4.20
1392 1420 1.060842 CTCACCGAGTAGACGTCGAAG 59.939 57.143 10.46 0.00 39.92 3.79
1442 1478 0.958091 TGGTTTGCTTCGGTTGGATG 59.042 50.000 0.00 0.00 0.00 3.51
1596 1632 2.354109 TGCAGCAACAACACGAAAAA 57.646 40.000 0.00 0.00 0.00 1.94
1599 1635 1.002576 CTCATGCAGCAACAACACGAA 60.003 47.619 0.00 0.00 0.00 3.85
1601 1637 0.587768 TCTCATGCAGCAACAACACG 59.412 50.000 0.00 0.00 0.00 4.49
1602 1638 1.605710 ACTCTCATGCAGCAACAACAC 59.394 47.619 0.00 0.00 0.00 3.32
1604 1640 1.875514 TCACTCTCATGCAGCAACAAC 59.124 47.619 0.00 0.00 0.00 3.32
1656 1693 2.216940 CAGCAACTGCAAAATCAACACG 59.783 45.455 4.22 0.00 45.16 4.49
1790 1827 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1841 1881 0.887933 TGAATTTTGGCGAGGAAGGC 59.112 50.000 0.00 0.00 37.19 4.35
1842 1882 2.162681 ACTGAATTTTGGCGAGGAAGG 58.837 47.619 0.00 0.00 0.00 3.46
1844 1884 2.225491 CGAACTGAATTTTGGCGAGGAA 59.775 45.455 0.00 0.00 0.00 3.36
1845 1885 1.804151 CGAACTGAATTTTGGCGAGGA 59.196 47.619 0.00 0.00 0.00 3.71
1846 1886 1.804151 TCGAACTGAATTTTGGCGAGG 59.196 47.619 0.00 0.00 0.00 4.63
1847 1887 3.536158 TTCGAACTGAATTTTGGCGAG 57.464 42.857 0.00 0.00 0.00 5.03
1870 1910 2.293122 ACAGTACGTACGTTGGTTAGCA 59.707 45.455 27.92 2.14 0.00 3.49
1913 1958 2.426738 CGCCAGCCTTCCATTTCATTTA 59.573 45.455 0.00 0.00 0.00 1.40
2453 2522 0.976590 AGAAGTAGAACTCCGGGGCC 60.977 60.000 0.00 0.00 0.00 5.80
2459 2528 4.729227 CTTCTGGGAGAAGTAGAACTCC 57.271 50.000 0.00 0.00 45.03 3.85
2762 2926 2.443016 TTGTGGTGGTTGTGCCCC 60.443 61.111 0.00 0.00 36.04 5.80
2765 2929 0.385390 CCTTCTTGTGGTGGTTGTGC 59.615 55.000 0.00 0.00 0.00 4.57
3026 3298 0.543749 GAAGGTGTGAGAGGATGGGG 59.456 60.000 0.00 0.00 0.00 4.96
3037 3309 4.963276 TGAAAGTGAAACAGAAGGTGTG 57.037 40.909 0.00 0.00 40.26 3.82
3057 3329 2.485122 GGCCAACGCTTCGGAATG 59.515 61.111 0.00 0.00 34.44 2.67
3058 3330 2.750237 GGGCCAACGCTTCGGAAT 60.750 61.111 4.39 0.00 34.44 3.01
3084 3356 4.465512 CGCCACGCCACAGCATTC 62.466 66.667 0.00 0.00 39.83 2.67
3095 3367 1.585002 CAACAACCACAACGCCACG 60.585 57.895 0.00 0.00 0.00 4.94
3306 3581 0.955919 CCGCCCTTCTTGTCCTTGTC 60.956 60.000 0.00 0.00 0.00 3.18
3491 3775 0.179153 TCTTCTGCGACATGAGCGAG 60.179 55.000 14.93 11.65 37.44 5.03
3728 4032 2.124151 GATTCCCGGCTGGTGCAT 60.124 61.111 11.58 0.00 41.91 3.96
3862 4171 9.947433 ATAATTTTCAAGCCAGAAATCAAATCA 57.053 25.926 2.44 0.00 37.35 2.57
3864 4173 8.671028 GCATAATTTTCAAGCCAGAAATCAAAT 58.329 29.630 2.44 0.00 37.35 2.32
3865 4174 7.660617 TGCATAATTTTCAAGCCAGAAATCAAA 59.339 29.630 2.44 0.00 37.35 2.69
3866 4175 7.160049 TGCATAATTTTCAAGCCAGAAATCAA 58.840 30.769 2.44 0.00 37.35 2.57
3867 4176 6.699366 TGCATAATTTTCAAGCCAGAAATCA 58.301 32.000 2.44 0.00 37.35 2.57
3868 4177 7.037438 TCTGCATAATTTTCAAGCCAGAAATC 58.963 34.615 2.44 0.00 37.35 2.17
4060 4400 3.017442 ACTCATGAAGATCTCGACGGAA 58.983 45.455 0.00 0.00 0.00 4.30
4251 4594 3.130340 GCTTGGTTGAAAGAAGTGGTGAA 59.870 43.478 0.00 0.00 0.00 3.18
4255 4598 2.035066 CCAGCTTGGTTGAAAGAAGTGG 59.965 50.000 0.00 0.00 31.35 4.00
4268 4611 3.060615 GCAGGCAGACCAGCTTGG 61.061 66.667 0.00 1.16 44.75 3.61
4480 4920 1.289066 CTGGAAGACGGCGAACAGA 59.711 57.895 16.62 0.00 34.07 3.41
4932 5372 2.780643 CGTGCGAGCCATTGACAG 59.219 61.111 0.00 0.00 0.00 3.51
4949 5389 2.028733 CGCCCCAAAAGTGCAATGC 61.029 57.895 0.00 0.00 0.00 3.56
5078 5518 4.202441 ACAGAAATGCAGAAACAGTGTCT 58.798 39.130 0.00 0.00 0.00 3.41
5099 5539 4.029704 TGCGAACACAAAAATGTAACGAC 58.970 39.130 0.00 0.00 35.78 4.34
5118 5558 0.109781 GTGGTGTATGCCAAGTTGCG 60.110 55.000 0.00 0.00 40.68 4.85
5139 5579 5.253096 AGTTTACAGAGGGGGTATTTGATGT 59.747 40.000 0.00 0.00 0.00 3.06
5240 5687 6.954487 AAGACTCGGTTTCCTATTTTGTTT 57.046 33.333 0.00 0.00 0.00 2.83
5257 5706 4.799428 GGTTGAGATGCGTAGTTAAGACTC 59.201 45.833 0.00 0.00 37.33 3.36
5278 5727 6.352737 CCTTCTCTCTTCTCTCTGTAGTAGGT 60.353 46.154 0.00 0.00 0.00 3.08
5292 5741 1.416030 GGGATGGCTCCTTCTCTCTTC 59.584 57.143 3.54 0.00 41.74 2.87
5359 5810 4.287845 TGGTGCTGGATCAATATATGAGCT 59.712 41.667 0.00 0.00 44.01 4.09
5372 5823 0.963962 CTTGTTTGCTGGTGCTGGAT 59.036 50.000 0.00 0.00 40.48 3.41
5392 5844 9.297586 CGTCTTTGCTGTTTATACTCTGTTATA 57.702 33.333 0.00 0.00 0.00 0.98
5417 5870 8.697846 TGTAATACAAAGATGAAGGAACTACG 57.302 34.615 0.00 0.00 38.49 3.51
5444 5897 3.003689 CCCCGCTTTAGCTCAATGTTATG 59.996 47.826 0.00 0.00 39.32 1.90
5456 5909 1.067582 CTCTACGGCCCCGCTTTAG 59.932 63.158 6.63 1.80 44.19 1.85
5470 5923 5.179368 CGTTGTTTTCTCTGCCATTTCTCTA 59.821 40.000 0.00 0.00 0.00 2.43
5478 5931 0.662619 CTGCGTTGTTTTCTCTGCCA 59.337 50.000 0.00 0.00 0.00 4.92
5480 5933 0.993746 CGCTGCGTTGTTTTCTCTGC 60.994 55.000 14.93 0.00 0.00 4.26
5497 5950 1.001633 TCCTCTTGGACAAACCTACGC 59.998 52.381 0.00 0.00 37.46 4.42
5498 5951 3.244112 ACTTCCTCTTGGACAAACCTACG 60.244 47.826 0.00 0.00 43.06 3.51
5522 5975 0.392327 GTTCTGCTCTCTGGAAGGCC 60.392 60.000 0.00 0.00 0.00 5.19
5536 5991 5.065218 CGGATAAAGATTGGTTGGAGTTCTG 59.935 44.000 0.00 0.00 0.00 3.02
5546 6001 3.627395 TCACAGCGGATAAAGATTGGT 57.373 42.857 0.00 0.00 0.00 3.67
5550 6005 5.923204 AGAAGAATCACAGCGGATAAAGAT 58.077 37.500 0.00 0.00 0.00 2.40
5552 6007 4.208047 CGAGAAGAATCACAGCGGATAAAG 59.792 45.833 0.00 0.00 0.00 1.85
5647 6103 1.860484 GCAAGAAGTGAGCTGGTGGC 61.860 60.000 0.00 0.00 42.19 5.01
5651 6107 2.037136 CCCGCAAGAAGTGAGCTGG 61.037 63.158 0.00 0.00 43.02 4.85
5720 6180 1.594331 GCGGATGACCCTTGTATTCC 58.406 55.000 0.00 0.00 0.00 3.01
5760 6220 6.365520 ACCCTTTGGAGATTATGTAATGGAC 58.634 40.000 0.00 0.00 34.81 4.02
5774 6234 2.965147 ACATTTGTTGGACCCTTTGGAG 59.035 45.455 0.00 0.00 34.81 3.86
5795 6255 6.497259 GGTATAGTGATGGTAGGGATTTCTGA 59.503 42.308 0.00 0.00 0.00 3.27
5827 6288 2.354303 GGGTTAAAAATTTGGGAGGGCG 60.354 50.000 0.00 0.00 0.00 6.13
5861 6322 3.914426 TCCTGGAAACCTAGATTCTGC 57.086 47.619 0.00 0.00 0.00 4.26
5876 6337 2.040278 TCAACTTGGGAGACATTCCTGG 59.960 50.000 0.00 0.00 45.98 4.45
5877 6338 3.423539 TCAACTTGGGAGACATTCCTG 57.576 47.619 0.00 0.00 45.98 3.86
5888 6349 4.582701 TGTAATGTGCTTTCAACTTGGG 57.417 40.909 0.00 0.00 0.00 4.12
5889 6350 6.507771 CGTTTTGTAATGTGCTTTCAACTTGG 60.508 38.462 0.00 0.00 0.00 3.61
5896 6357 5.038033 TGGAACGTTTTGTAATGTGCTTTC 58.962 37.500 0.46 0.00 33.82 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.