Multiple sequence alignment - TraesCS1A01G148800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G148800 chr1A 100.000 2123 0 0 1 2123 256026528 256028650 0.000000e+00 3921
1 TraesCS1A01G148800 chr1A 82.875 327 49 6 1645 1966 499323952 499324276 9.590000e-74 287
2 TraesCS1A01G148800 chr1A 100.000 93 0 0 1718 1810 256028079 256028171 2.800000e-39 172
3 TraesCS1A01G148800 chr1A 100.000 93 0 0 1552 1644 256028245 256028337 2.800000e-39 172
4 TraesCS1A01G148800 chr1A 91.398 93 7 1 1553 1644 499324027 499324119 2.210000e-25 126
5 TraesCS1A01G148800 chr2D 98.870 1505 12 5 1 1501 628285308 628283805 0.000000e+00 2680
6 TraesCS1A01G148800 chr2D 97.103 1519 22 8 1 1501 334225564 334224050 0.000000e+00 2542
7 TraesCS1A01G148800 chr6D 98.280 1512 15 5 1 1501 431399669 431398158 0.000000e+00 2638
8 TraesCS1A01G148800 chr1D 98.212 1510 18 3 1 1501 254489340 254487831 0.000000e+00 2630
9 TraesCS1A01G148800 chr1D 96.146 1505 48 7 1 1501 244401805 244400307 0.000000e+00 2449
10 TraesCS1A01G148800 chr1D 96.080 1505 50 6 1 1501 244408256 244406757 0.000000e+00 2444
11 TraesCS1A01G148800 chr1D 94.954 1506 65 7 1 1501 244423793 244422294 0.000000e+00 2350
12 TraesCS1A01G148800 chr3D 97.946 1509 22 4 1 1501 21897199 21895692 0.000000e+00 2606
13 TraesCS1A01G148800 chr2A 97.074 1504 38 6 1 1501 335825918 335824418 0.000000e+00 2529
14 TraesCS1A01G148800 chrUn 97.110 346 3 1 1 339 317473551 317473896 5.080000e-161 577
15 TraesCS1A01G148800 chr4A 83.616 354 39 13 1647 1986 533455668 533456016 4.400000e-82 315
16 TraesCS1A01G148800 chr4A 84.884 258 30 7 1652 1904 521613404 521613151 3.500000e-63 252
17 TraesCS1A01G148800 chr4A 84.898 245 29 7 1665 1904 536859969 536859728 7.570000e-60 241
18 TraesCS1A01G148800 chr7D 87.755 245 26 4 1637 1879 334869810 334869568 1.240000e-72 283
19 TraesCS1A01G148800 chr7D 92.079 101 7 1 1553 1652 334869728 334869628 7.900000e-30 141
20 TraesCS1A01G148800 chr2B 85.714 231 26 6 1652 1878 325838339 325838112 9.790000e-59 237
21 TraesCS1A01G148800 chr2B 88.696 115 12 1 1652 1765 371354959 371355073 2.840000e-29 139
22 TraesCS1A01G148800 chr3B 88.800 125 11 3 1646 1768 679520266 679520389 1.310000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G148800 chr1A 256026528 256028650 2122 False 1421.666667 3921 100.000 1 2123 3 chr1A.!!$F1 2122
1 TraesCS1A01G148800 chr2D 628283805 628285308 1503 True 2680.000000 2680 98.870 1 1501 1 chr2D.!!$R2 1500
2 TraesCS1A01G148800 chr2D 334224050 334225564 1514 True 2542.000000 2542 97.103 1 1501 1 chr2D.!!$R1 1500
3 TraesCS1A01G148800 chr6D 431398158 431399669 1511 True 2638.000000 2638 98.280 1 1501 1 chr6D.!!$R1 1500
4 TraesCS1A01G148800 chr1D 254487831 254489340 1509 True 2630.000000 2630 98.212 1 1501 1 chr1D.!!$R4 1500
5 TraesCS1A01G148800 chr1D 244400307 244401805 1498 True 2449.000000 2449 96.146 1 1501 1 chr1D.!!$R1 1500
6 TraesCS1A01G148800 chr1D 244406757 244408256 1499 True 2444.000000 2444 96.080 1 1501 1 chr1D.!!$R2 1500
7 TraesCS1A01G148800 chr1D 244422294 244423793 1499 True 2350.000000 2350 94.954 1 1501 1 chr1D.!!$R3 1500
8 TraesCS1A01G148800 chr3D 21895692 21897199 1507 True 2606.000000 2606 97.946 1 1501 1 chr3D.!!$R1 1500
9 TraesCS1A01G148800 chr2A 335824418 335825918 1500 True 2529.000000 2529 97.074 1 1501 1 chr2A.!!$R1 1500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 911 9.482627 TCAATTGAGAGAAAGAAAGAGACTAAC 57.517 33.333 3.38 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2111 0.035739 TGTTTCCTCCTGTAACGGCC 59.964 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 9.991906 ATTCCGAATTACTCTATTATTCCGAAA 57.008 29.630 0.00 0.00 32.98 3.46
600 616 9.522804 GAACAACTCGATGAATTTAGTAGATCT 57.477 33.333 0.00 0.00 0.00 2.75
894 911 9.482627 TCAATTGAGAGAAAGAAAGAGACTAAC 57.517 33.333 3.38 0.00 0.00 2.34
1117 1136 6.301486 TCATATTCTGGATTGGGTTCATCTG 58.699 40.000 0.00 0.00 0.00 2.90
1502 1526 5.199424 GCAATTTGCTCACAATCACAATC 57.801 39.130 14.11 0.00 40.96 2.67
1503 1527 4.687018 GCAATTTGCTCACAATCACAATCA 59.313 37.500 14.11 0.00 40.96 2.57
1504 1528 5.177881 GCAATTTGCTCACAATCACAATCAA 59.822 36.000 14.11 0.00 40.96 2.57
1505 1529 6.292973 GCAATTTGCTCACAATCACAATCAAA 60.293 34.615 14.11 0.00 40.96 2.69
1506 1530 7.631822 CAATTTGCTCACAATCACAATCAAAA 58.368 30.769 0.00 0.00 35.21 2.44
1507 1531 6.586868 TTTGCTCACAATCACAATCAAAAC 57.413 33.333 0.00 0.00 35.21 2.43
1508 1532 5.518848 TGCTCACAATCACAATCAAAACT 57.481 34.783 0.00 0.00 0.00 2.66
1509 1533 6.631971 TGCTCACAATCACAATCAAAACTA 57.368 33.333 0.00 0.00 0.00 2.24
1510 1534 7.218228 TGCTCACAATCACAATCAAAACTAT 57.782 32.000 0.00 0.00 0.00 2.12
1511 1535 7.660112 TGCTCACAATCACAATCAAAACTATT 58.340 30.769 0.00 0.00 0.00 1.73
1512 1536 7.809331 TGCTCACAATCACAATCAAAACTATTC 59.191 33.333 0.00 0.00 0.00 1.75
1513 1537 7.809331 GCTCACAATCACAATCAAAACTATTCA 59.191 33.333 0.00 0.00 0.00 2.57
1514 1538 9.681692 CTCACAATCACAATCAAAACTATTCAA 57.318 29.630 0.00 0.00 0.00 2.69
1515 1539 9.462174 TCACAATCACAATCAAAACTATTCAAC 57.538 29.630 0.00 0.00 0.00 3.18
1516 1540 9.467258 CACAATCACAATCAAAACTATTCAACT 57.533 29.630 0.00 0.00 0.00 3.16
1519 1543 9.846248 AATCACAATCAAAACTATTCAACTAGC 57.154 29.630 0.00 0.00 0.00 3.42
1520 1544 7.816640 TCACAATCAAAACTATTCAACTAGCC 58.183 34.615 0.00 0.00 0.00 3.93
1521 1545 7.665559 TCACAATCAAAACTATTCAACTAGCCT 59.334 33.333 0.00 0.00 0.00 4.58
1522 1546 8.946085 CACAATCAAAACTATTCAACTAGCCTA 58.054 33.333 0.00 0.00 0.00 3.93
1523 1547 9.515226 ACAATCAAAACTATTCAACTAGCCTAA 57.485 29.630 0.00 0.00 0.00 2.69
1555 1579 9.554395 AAAAATCCTTGATTTAACGGAATGTTT 57.446 25.926 2.73 0.00 40.77 2.83
1556 1580 9.554395 AAAATCCTTGATTTAACGGAATGTTTT 57.446 25.926 2.73 0.00 40.77 2.43
1560 1584 9.849166 TCCTTGATTTAACGGAATGTTTTATTC 57.151 29.630 0.00 0.00 42.09 1.75
1561 1585 9.632807 CCTTGATTTAACGGAATGTTTTATTCA 57.367 29.630 0.00 0.00 42.09 2.57
1580 1604 9.921637 TTTATTCATTTTATGTTCTTTTCCGCT 57.078 25.926 0.00 0.00 0.00 5.52
1581 1605 9.921637 TTATTCATTTTATGTTCTTTTCCGCTT 57.078 25.926 0.00 0.00 0.00 4.68
1586 1610 8.958043 CATTTTATGTTCTTTTCCGCTTATAGC 58.042 33.333 0.00 0.00 38.02 2.97
1598 1622 2.210961 GCTTATAGCGAAAGGTGGACC 58.789 52.381 0.00 0.00 44.53 4.46
1599 1623 2.419574 GCTTATAGCGAAAGGTGGACCA 60.420 50.000 0.00 0.00 44.53 4.02
1600 1624 2.973694 TATAGCGAAAGGTGGACCAC 57.026 50.000 16.86 16.86 44.53 4.16
1601 1625 0.108329 ATAGCGAAAGGTGGACCACG 60.108 55.000 18.40 7.78 44.53 4.94
1602 1626 2.775032 TAGCGAAAGGTGGACCACGC 62.775 60.000 18.40 17.27 46.62 5.34
1612 1636 4.465512 GACCACGCCGCATGCAAG 62.466 66.667 19.57 9.55 41.33 4.01
1620 1644 4.113815 CGCATGCAAGGGGAGGGA 62.114 66.667 19.57 0.00 29.20 4.20
1621 1645 2.440980 GCATGCAAGGGGAGGGAC 60.441 66.667 14.21 0.00 0.00 4.46
1622 1646 2.276740 CATGCAAGGGGAGGGACC 59.723 66.667 0.00 0.00 38.08 4.46
1623 1647 3.411517 ATGCAAGGGGAGGGACCG 61.412 66.667 0.00 0.00 40.11 4.79
1635 1659 4.162690 GGACCGGGCAGGCACTAG 62.163 72.222 11.00 0.00 46.52 2.57
1636 1660 4.162690 GACCGGGCAGGCACTAGG 62.163 72.222 0.00 0.00 46.52 3.02
1659 1683 3.599704 GCCGGGGCAGATGCAATC 61.600 66.667 2.18 0.00 46.04 2.67
1668 1692 3.403277 GATGCAATCACGAGCGCT 58.597 55.556 11.27 11.27 44.70 5.92
1669 1693 1.275066 GATGCAATCACGAGCGCTC 59.725 57.895 27.64 27.64 44.70 5.03
1678 1702 3.036084 CGAGCGCTCGTTGGTGTT 61.036 61.111 43.16 4.68 46.99 3.32
1679 1703 2.551270 GAGCGCTCGTTGGTGTTG 59.449 61.111 23.61 0.00 0.00 3.33
1680 1704 2.954753 GAGCGCTCGTTGGTGTTGG 61.955 63.158 23.61 0.00 0.00 3.77
1681 1705 4.025401 GCGCTCGTTGGTGTTGGG 62.025 66.667 0.00 0.00 0.00 4.12
1682 1706 2.280524 CGCTCGTTGGTGTTGGGA 60.281 61.111 0.00 0.00 0.00 4.37
1683 1707 1.671054 CGCTCGTTGGTGTTGGGAT 60.671 57.895 0.00 0.00 0.00 3.85
1684 1708 1.635663 CGCTCGTTGGTGTTGGGATC 61.636 60.000 0.00 0.00 0.00 3.36
1685 1709 0.321653 GCTCGTTGGTGTTGGGATCT 60.322 55.000 0.00 0.00 0.00 2.75
1686 1710 1.442769 CTCGTTGGTGTTGGGATCTG 58.557 55.000 0.00 0.00 0.00 2.90
1687 1711 0.036164 TCGTTGGTGTTGGGATCTGG 59.964 55.000 0.00 0.00 0.00 3.86
1688 1712 0.250727 CGTTGGTGTTGGGATCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
1689 1713 1.534729 GTTGGTGTTGGGATCTGGTC 58.465 55.000 0.00 0.00 0.00 4.02
1698 1722 3.644953 GGATCTGGTCCCTCCTCTT 57.355 57.895 0.00 0.00 41.50 2.85
1699 1723 2.777459 GGATCTGGTCCCTCCTCTTA 57.223 55.000 0.00 0.00 41.50 2.10
1700 1724 2.321719 GGATCTGGTCCCTCCTCTTAC 58.678 57.143 0.00 0.00 41.50 2.34
1701 1725 2.321719 GATCTGGTCCCTCCTCTTACC 58.678 57.143 0.00 0.00 37.07 2.85
1702 1726 1.394532 TCTGGTCCCTCCTCTTACCT 58.605 55.000 0.00 0.00 37.07 3.08
1703 1727 1.288335 TCTGGTCCCTCCTCTTACCTC 59.712 57.143 0.00 0.00 37.07 3.85
1704 1728 1.007238 CTGGTCCCTCCTCTTACCTCA 59.993 57.143 0.00 0.00 37.07 3.86
1705 1729 1.651770 TGGTCCCTCCTCTTACCTCAT 59.348 52.381 0.00 0.00 37.07 2.90
1706 1730 2.045885 TGGTCCCTCCTCTTACCTCATT 59.954 50.000 0.00 0.00 37.07 2.57
1707 1731 3.116174 GGTCCCTCCTCTTACCTCATTT 58.884 50.000 0.00 0.00 0.00 2.32
1708 1732 3.118223 GGTCCCTCCTCTTACCTCATTTG 60.118 52.174 0.00 0.00 0.00 2.32
1709 1733 2.505819 TCCCTCCTCTTACCTCATTTGC 59.494 50.000 0.00 0.00 0.00 3.68
1710 1734 2.507471 CCCTCCTCTTACCTCATTTGCT 59.493 50.000 0.00 0.00 0.00 3.91
1711 1735 3.054065 CCCTCCTCTTACCTCATTTGCTT 60.054 47.826 0.00 0.00 0.00 3.91
1712 1736 4.568592 CCCTCCTCTTACCTCATTTGCTTT 60.569 45.833 0.00 0.00 0.00 3.51
1713 1737 5.012893 CCTCCTCTTACCTCATTTGCTTTT 58.987 41.667 0.00 0.00 0.00 2.27
1714 1738 5.478332 CCTCCTCTTACCTCATTTGCTTTTT 59.522 40.000 0.00 0.00 0.00 1.94
1746 1770 9.921637 TTTATTCATTTTATGTTCTTTTCCGCT 57.078 25.926 0.00 0.00 0.00 5.52
1747 1771 9.921637 TTATTCATTTTATGTTCTTTTCCGCTT 57.078 25.926 0.00 0.00 0.00 4.68
1752 1776 8.958043 CATTTTATGTTCTTTTCCGCTTATAGC 58.042 33.333 0.00 0.00 38.02 2.97
1764 1788 2.210961 GCTTATAGCGAAAGGTGGACC 58.789 52.381 0.00 0.00 44.53 4.46
1765 1789 2.419574 GCTTATAGCGAAAGGTGGACCA 60.420 50.000 0.00 0.00 44.53 4.02
1766 1790 2.973694 TATAGCGAAAGGTGGACCAC 57.026 50.000 16.86 16.86 44.53 4.16
1767 1791 0.108329 ATAGCGAAAGGTGGACCACG 60.108 55.000 18.40 7.78 44.53 4.94
1768 1792 2.775032 TAGCGAAAGGTGGACCACGC 62.775 60.000 18.40 17.27 46.62 5.34
1778 1802 4.465512 GACCACGCCGCATGCAAG 62.466 66.667 19.57 9.55 41.33 4.01
1786 1810 4.113815 CGCATGCAAGGGGAGGGA 62.114 66.667 19.57 0.00 29.20 4.20
1787 1811 2.440980 GCATGCAAGGGGAGGGAC 60.441 66.667 14.21 0.00 0.00 4.46
1788 1812 2.276740 CATGCAAGGGGAGGGACC 59.723 66.667 0.00 0.00 38.08 4.46
1789 1813 3.411517 ATGCAAGGGGAGGGACCG 61.412 66.667 0.00 0.00 40.11 4.79
1801 1825 4.162690 GGACCGGGCAGGCACTAG 62.163 72.222 11.00 0.00 46.52 2.57
1802 1826 4.162690 GACCGGGCAGGCACTAGG 62.163 72.222 0.00 0.00 46.52 3.02
1811 1835 2.202810 GGCACTAGGCTGTCGCTC 60.203 66.667 0.00 0.00 44.01 5.03
1812 1836 2.716017 GGCACTAGGCTGTCGCTCT 61.716 63.158 0.00 0.00 44.01 4.09
1813 1837 1.216710 GCACTAGGCTGTCGCTCTT 59.783 57.895 0.00 0.00 40.25 2.85
1814 1838 1.080995 GCACTAGGCTGTCGCTCTTG 61.081 60.000 0.00 0.00 40.25 3.02
1815 1839 1.080995 CACTAGGCTGTCGCTCTTGC 61.081 60.000 0.00 0.00 36.09 4.01
1816 1840 1.216444 CTAGGCTGTCGCTCTTGCA 59.784 57.895 0.00 0.00 39.64 4.08
1817 1841 0.390340 CTAGGCTGTCGCTCTTGCAA 60.390 55.000 0.00 0.00 39.64 4.08
1818 1842 0.670546 TAGGCTGTCGCTCTTGCAAC 60.671 55.000 0.00 0.00 39.64 4.17
1819 1843 2.558313 GCTGTCGCTCTTGCAACC 59.442 61.111 0.00 0.00 39.64 3.77
1820 1844 1.963338 GCTGTCGCTCTTGCAACCT 60.963 57.895 0.00 0.00 39.64 3.50
1821 1845 0.670546 GCTGTCGCTCTTGCAACCTA 60.671 55.000 0.00 0.00 39.64 3.08
1822 1846 1.354040 CTGTCGCTCTTGCAACCTAG 58.646 55.000 0.00 0.00 39.64 3.02
1823 1847 0.679505 TGTCGCTCTTGCAACCTAGT 59.320 50.000 0.00 0.00 39.64 2.57
1824 1848 1.890489 TGTCGCTCTTGCAACCTAGTA 59.110 47.619 0.00 0.00 39.64 1.82
1825 1849 2.094700 TGTCGCTCTTGCAACCTAGTAG 60.095 50.000 0.00 0.00 39.64 2.57
1826 1850 2.163815 GTCGCTCTTGCAACCTAGTAGA 59.836 50.000 0.00 0.00 39.64 2.59
1827 1851 2.163815 TCGCTCTTGCAACCTAGTAGAC 59.836 50.000 0.00 0.00 39.64 2.59
1828 1852 2.094700 CGCTCTTGCAACCTAGTAGACA 60.095 50.000 0.00 0.00 39.64 3.41
1829 1853 3.516615 GCTCTTGCAACCTAGTAGACAG 58.483 50.000 0.00 0.00 39.41 3.51
1830 1854 3.677424 GCTCTTGCAACCTAGTAGACAGG 60.677 52.174 0.00 0.00 39.41 4.00
1831 1855 3.764434 CTCTTGCAACCTAGTAGACAGGA 59.236 47.826 0.00 0.00 36.61 3.86
1832 1856 3.510360 TCTTGCAACCTAGTAGACAGGAC 59.490 47.826 0.00 0.00 36.61 3.85
1833 1857 2.176889 TGCAACCTAGTAGACAGGACC 58.823 52.381 0.00 0.00 36.61 4.46
1834 1858 2.176889 GCAACCTAGTAGACAGGACCA 58.823 52.381 0.00 0.00 36.61 4.02
1835 1859 2.094130 GCAACCTAGTAGACAGGACCAC 60.094 54.545 0.00 0.00 36.61 4.16
1836 1860 2.496470 CAACCTAGTAGACAGGACCACC 59.504 54.545 0.00 0.00 36.61 4.61
1837 1861 1.340795 ACCTAGTAGACAGGACCACCG 60.341 57.143 0.00 0.00 41.83 4.94
1838 1862 1.064906 CCTAGTAGACAGGACCACCGA 60.065 57.143 0.00 0.00 41.83 4.69
1839 1863 2.423088 CCTAGTAGACAGGACCACCGAT 60.423 54.545 0.00 0.00 41.83 4.18
1840 1864 1.475403 AGTAGACAGGACCACCGATG 58.525 55.000 0.00 0.00 41.83 3.84
1841 1865 0.179108 GTAGACAGGACCACCGATGC 60.179 60.000 0.00 0.00 41.83 3.91
1842 1866 1.327690 TAGACAGGACCACCGATGCC 61.328 60.000 0.00 0.00 41.83 4.40
1843 1867 2.927856 ACAGGACCACCGATGCCA 60.928 61.111 0.00 0.00 41.83 4.92
1844 1868 2.350895 CAGGACCACCGATGCCAA 59.649 61.111 0.00 0.00 41.83 4.52
1845 1869 1.303236 CAGGACCACCGATGCCAAA 60.303 57.895 0.00 0.00 41.83 3.28
1846 1870 0.893270 CAGGACCACCGATGCCAAAA 60.893 55.000 0.00 0.00 41.83 2.44
1847 1871 0.609131 AGGACCACCGATGCCAAAAG 60.609 55.000 0.00 0.00 41.83 2.27
1848 1872 1.595093 GGACCACCGATGCCAAAAGG 61.595 60.000 0.00 0.00 0.00 3.11
1849 1873 0.608035 GACCACCGATGCCAAAAGGA 60.608 55.000 0.00 0.00 0.00 3.36
1850 1874 0.178975 ACCACCGATGCCAAAAGGAA 60.179 50.000 0.00 0.00 0.00 3.36
1851 1875 0.965439 CCACCGATGCCAAAAGGAAA 59.035 50.000 0.00 0.00 0.00 3.13
1852 1876 1.342819 CCACCGATGCCAAAAGGAAAA 59.657 47.619 0.00 0.00 0.00 2.29
1853 1877 2.224161 CCACCGATGCCAAAAGGAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
1854 1878 3.556843 CCACCGATGCCAAAAGGAAAAAT 60.557 43.478 0.00 0.00 0.00 1.82
1855 1879 3.432933 CACCGATGCCAAAAGGAAAAATG 59.567 43.478 0.00 0.00 0.00 2.32
1856 1880 3.070878 ACCGATGCCAAAAGGAAAAATGT 59.929 39.130 0.00 0.00 0.00 2.71
1857 1881 4.064388 CCGATGCCAAAAGGAAAAATGTT 58.936 39.130 0.00 0.00 0.00 2.71
1858 1882 4.152223 CCGATGCCAAAAGGAAAAATGTTC 59.848 41.667 0.00 0.00 0.00 3.18
1859 1883 4.152223 CGATGCCAAAAGGAAAAATGTTCC 59.848 41.667 0.00 0.00 38.86 3.62
1867 1891 4.402616 AGGAAAAATGTTCCTCCATGGA 57.597 40.909 15.27 15.27 45.32 3.41
1880 1904 3.423539 TCCATGGAAACTGGAGAACTG 57.576 47.619 13.46 0.00 37.87 3.16
1881 1905 2.711009 TCCATGGAAACTGGAGAACTGT 59.289 45.455 13.46 0.00 37.87 3.55
1882 1906 3.138283 TCCATGGAAACTGGAGAACTGTT 59.862 43.478 13.46 0.00 42.22 3.16
1883 1907 3.503748 CCATGGAAACTGGAGAACTGTTC 59.496 47.826 5.56 12.54 39.91 3.18
1884 1908 2.833794 TGGAAACTGGAGAACTGTTCG 58.166 47.619 14.35 3.56 39.91 3.95
1885 1909 2.143925 GGAAACTGGAGAACTGTTCGG 58.856 52.381 14.35 8.96 39.91 4.30
1886 1910 2.143925 GAAACTGGAGAACTGTTCGGG 58.856 52.381 14.35 8.66 39.91 5.14
1887 1911 0.396811 AACTGGAGAACTGTTCGGGG 59.603 55.000 14.35 8.96 36.65 5.73
1888 1912 0.471211 ACTGGAGAACTGTTCGGGGA 60.471 55.000 14.35 0.59 34.02 4.81
1889 1913 0.905357 CTGGAGAACTGTTCGGGGAT 59.095 55.000 14.35 0.00 34.02 3.85
1890 1914 0.613260 TGGAGAACTGTTCGGGGATG 59.387 55.000 14.35 0.00 34.02 3.51
1891 1915 0.107654 GGAGAACTGTTCGGGGATGG 60.108 60.000 14.35 0.00 34.02 3.51
1892 1916 0.613777 GAGAACTGTTCGGGGATGGT 59.386 55.000 14.35 0.00 34.02 3.55
1893 1917 1.003233 GAGAACTGTTCGGGGATGGTT 59.997 52.381 14.35 0.00 34.02 3.67
1894 1918 1.423921 AGAACTGTTCGGGGATGGTTT 59.576 47.619 14.35 0.00 34.02 3.27
1895 1919 1.539827 GAACTGTTCGGGGATGGTTTG 59.460 52.381 4.57 0.00 0.00 2.93
1896 1920 0.768622 ACTGTTCGGGGATGGTTTGA 59.231 50.000 0.00 0.00 0.00 2.69
1897 1921 1.144093 ACTGTTCGGGGATGGTTTGAA 59.856 47.619 0.00 0.00 0.00 2.69
1898 1922 1.539827 CTGTTCGGGGATGGTTTGAAC 59.460 52.381 0.00 0.00 39.40 3.18
1912 1936 5.079689 GGTTTGAACCTTTTCTTTGGTGA 57.920 39.130 5.66 0.00 45.75 4.02
1913 1937 5.109210 GGTTTGAACCTTTTCTTTGGTGAG 58.891 41.667 5.66 0.00 45.75 3.51
1914 1938 4.385358 TTGAACCTTTTCTTTGGTGAGC 57.615 40.909 0.00 0.00 36.57 4.26
1915 1939 2.357637 TGAACCTTTTCTTTGGTGAGCG 59.642 45.455 0.00 0.00 36.57 5.03
1916 1940 2.052782 ACCTTTTCTTTGGTGAGCGT 57.947 45.000 0.00 0.00 34.90 5.07
1917 1941 1.676006 ACCTTTTCTTTGGTGAGCGTG 59.324 47.619 0.00 0.00 34.90 5.34
1918 1942 1.676006 CCTTTTCTTTGGTGAGCGTGT 59.324 47.619 0.00 0.00 0.00 4.49
1919 1943 2.099098 CCTTTTCTTTGGTGAGCGTGTT 59.901 45.455 0.00 0.00 0.00 3.32
1920 1944 3.428862 CCTTTTCTTTGGTGAGCGTGTTT 60.429 43.478 0.00 0.00 0.00 2.83
1921 1945 3.859411 TTTCTTTGGTGAGCGTGTTTT 57.141 38.095 0.00 0.00 0.00 2.43
1922 1946 3.859411 TTCTTTGGTGAGCGTGTTTTT 57.141 38.095 0.00 0.00 0.00 1.94
1960 1984 2.427232 TTTTGTCATTCAGCTGCTGC 57.573 45.000 24.38 7.62 40.05 5.25
1961 1985 0.239082 TTTGTCATTCAGCTGCTGCG 59.761 50.000 24.38 14.74 45.42 5.18
1962 1986 0.886043 TTGTCATTCAGCTGCTGCGT 60.886 50.000 24.38 12.30 45.42 5.24
1963 1987 0.037419 TGTCATTCAGCTGCTGCGTA 60.037 50.000 24.38 12.38 45.42 4.42
1964 1988 0.371645 GTCATTCAGCTGCTGCGTAC 59.628 55.000 24.38 14.85 45.42 3.67
1965 1989 0.740868 TCATTCAGCTGCTGCGTACC 60.741 55.000 24.38 0.00 45.42 3.34
1966 1990 1.811266 ATTCAGCTGCTGCGTACCG 60.811 57.895 24.38 0.00 45.42 4.02
1967 1991 3.932580 TTCAGCTGCTGCGTACCGG 62.933 63.158 24.38 0.00 45.42 5.28
1973 1997 4.874977 GCTGCGTACCGGGAGCTC 62.875 72.222 6.32 4.71 46.48 4.09
1974 1998 4.208686 CTGCGTACCGGGAGCTCC 62.209 72.222 25.59 25.59 0.00 4.70
1975 1999 4.753662 TGCGTACCGGGAGCTCCT 62.754 66.667 31.36 15.33 35.95 3.69
1976 2000 4.208686 GCGTACCGGGAGCTCCTG 62.209 72.222 31.73 31.73 42.13 3.86
1977 2001 4.208686 CGTACCGGGAGCTCCTGC 62.209 72.222 33.02 19.77 41.13 4.85
1978 2002 4.208686 GTACCGGGAGCTCCTGCG 62.209 72.222 33.02 26.49 45.42 5.18
1986 2010 2.277072 AGCTCCTGCGCTCTCCTA 59.723 61.111 9.73 0.00 45.42 2.94
1987 2011 1.152567 AGCTCCTGCGCTCTCCTAT 60.153 57.895 9.73 0.00 45.42 2.57
1988 2012 0.111446 AGCTCCTGCGCTCTCCTATA 59.889 55.000 9.73 0.00 45.42 1.31
1989 2013 0.525761 GCTCCTGCGCTCTCCTATAG 59.474 60.000 9.73 0.00 0.00 1.31
1990 2014 1.904287 CTCCTGCGCTCTCCTATAGT 58.096 55.000 9.73 0.00 0.00 2.12
1991 2015 2.235016 CTCCTGCGCTCTCCTATAGTT 58.765 52.381 9.73 0.00 0.00 2.24
1992 2016 2.227865 CTCCTGCGCTCTCCTATAGTTC 59.772 54.545 9.73 0.00 0.00 3.01
1993 2017 1.957177 CCTGCGCTCTCCTATAGTTCA 59.043 52.381 9.73 0.00 0.00 3.18
1994 2018 2.560542 CCTGCGCTCTCCTATAGTTCAT 59.439 50.000 9.73 0.00 0.00 2.57
1995 2019 3.006323 CCTGCGCTCTCCTATAGTTCATT 59.994 47.826 9.73 0.00 0.00 2.57
1996 2020 4.502259 CCTGCGCTCTCCTATAGTTCATTT 60.502 45.833 9.73 0.00 0.00 2.32
1997 2021 5.023533 TGCGCTCTCCTATAGTTCATTTT 57.976 39.130 9.73 0.00 0.00 1.82
1998 2022 4.811024 TGCGCTCTCCTATAGTTCATTTTG 59.189 41.667 9.73 0.00 0.00 2.44
1999 2023 5.050490 GCGCTCTCCTATAGTTCATTTTGA 58.950 41.667 0.00 0.00 0.00 2.69
2000 2024 5.698545 GCGCTCTCCTATAGTTCATTTTGAT 59.301 40.000 0.00 0.00 0.00 2.57
2001 2025 6.868864 GCGCTCTCCTATAGTTCATTTTGATA 59.131 38.462 0.00 0.00 0.00 2.15
2002 2026 7.148722 GCGCTCTCCTATAGTTCATTTTGATAC 60.149 40.741 0.00 0.00 0.00 2.24
2003 2027 8.085296 CGCTCTCCTATAGTTCATTTTGATACT 58.915 37.037 0.00 0.00 0.00 2.12
2004 2028 9.771534 GCTCTCCTATAGTTCATTTTGATACTT 57.228 33.333 0.00 0.00 0.00 2.24
2029 2053 8.586570 TTTTTAACTTTATGTGTTGATGGCAG 57.413 30.769 0.00 0.00 0.00 4.85
2030 2054 3.855689 ACTTTATGTGTTGATGGCAGC 57.144 42.857 0.00 0.00 0.00 5.25
2031 2055 2.493278 ACTTTATGTGTTGATGGCAGCC 59.507 45.455 3.66 3.66 0.00 4.85
2032 2056 1.473258 TTATGTGTTGATGGCAGCCC 58.527 50.000 9.64 0.00 0.00 5.19
2033 2057 0.747644 TATGTGTTGATGGCAGCCCG 60.748 55.000 9.64 0.00 0.00 6.13
2034 2058 2.672996 GTGTTGATGGCAGCCCGT 60.673 61.111 9.64 0.00 0.00 5.28
2035 2059 1.376683 GTGTTGATGGCAGCCCGTA 60.377 57.895 9.64 0.00 0.00 4.02
2036 2060 1.078497 TGTTGATGGCAGCCCGTAG 60.078 57.895 9.64 0.00 0.00 3.51
2037 2061 2.124736 TTGATGGCAGCCCGTAGC 60.125 61.111 9.64 0.00 44.25 3.58
2043 2067 4.878878 GCAGCCCGTAGCCTATTT 57.121 55.556 0.00 0.00 45.47 1.40
2044 2068 3.095922 GCAGCCCGTAGCCTATTTT 57.904 52.632 0.00 0.00 45.47 1.82
2045 2069 0.663153 GCAGCCCGTAGCCTATTTTG 59.337 55.000 0.00 0.00 45.47 2.44
2046 2070 1.745827 GCAGCCCGTAGCCTATTTTGA 60.746 52.381 0.00 0.00 45.47 2.69
2047 2071 2.851195 CAGCCCGTAGCCTATTTTGAT 58.149 47.619 0.00 0.00 45.47 2.57
2048 2072 2.808543 CAGCCCGTAGCCTATTTTGATC 59.191 50.000 0.00 0.00 45.47 2.92
2049 2073 2.152016 GCCCGTAGCCTATTTTGATCC 58.848 52.381 0.00 0.00 34.35 3.36
2050 2074 2.486548 GCCCGTAGCCTATTTTGATCCA 60.487 50.000 0.00 0.00 34.35 3.41
2051 2075 3.403038 CCCGTAGCCTATTTTGATCCAG 58.597 50.000 0.00 0.00 0.00 3.86
2052 2076 2.808543 CCGTAGCCTATTTTGATCCAGC 59.191 50.000 0.00 0.00 0.00 4.85
2053 2077 3.495100 CCGTAGCCTATTTTGATCCAGCT 60.495 47.826 0.00 0.00 0.00 4.24
2054 2078 3.496130 CGTAGCCTATTTTGATCCAGCTG 59.504 47.826 6.78 6.78 0.00 4.24
2055 2079 3.659183 AGCCTATTTTGATCCAGCTGT 57.341 42.857 13.81 0.00 0.00 4.40
2056 2080 3.973425 AGCCTATTTTGATCCAGCTGTT 58.027 40.909 13.81 0.00 0.00 3.16
2057 2081 3.698040 AGCCTATTTTGATCCAGCTGTTG 59.302 43.478 13.81 0.00 0.00 3.33
2058 2082 3.736126 GCCTATTTTGATCCAGCTGTTGC 60.736 47.826 13.81 1.35 40.05 4.17
2059 2083 2.642139 ATTTTGATCCAGCTGTTGCG 57.358 45.000 13.81 0.00 45.42 4.85
2060 2084 0.039256 TTTTGATCCAGCTGTTGCGC 60.039 50.000 13.81 0.00 45.42 6.09
2061 2085 0.890542 TTTGATCCAGCTGTTGCGCT 60.891 50.000 13.81 0.00 45.42 5.92
2062 2086 0.890542 TTGATCCAGCTGTTGCGCTT 60.891 50.000 13.81 0.00 45.42 4.68
2063 2087 1.300971 TGATCCAGCTGTTGCGCTTC 61.301 55.000 13.81 1.72 45.42 3.86
2064 2088 1.986575 GATCCAGCTGTTGCGCTTCC 61.987 60.000 13.81 0.00 45.42 3.46
2065 2089 3.741476 CCAGCTGTTGCGCTTCCC 61.741 66.667 13.81 0.00 45.42 3.97
2066 2090 2.979676 CAGCTGTTGCGCTTCCCA 60.980 61.111 9.73 0.00 45.42 4.37
2067 2091 2.034687 AGCTGTTGCGCTTCCCAT 59.965 55.556 9.73 0.00 45.42 4.00
2068 2092 1.604593 AGCTGTTGCGCTTCCCATT 60.605 52.632 9.73 0.00 45.42 3.16
2069 2093 0.322456 AGCTGTTGCGCTTCCCATTA 60.322 50.000 9.73 0.00 45.42 1.90
2070 2094 0.179163 GCTGTTGCGCTTCCCATTAC 60.179 55.000 9.73 0.00 0.00 1.89
2071 2095 0.096976 CTGTTGCGCTTCCCATTACG 59.903 55.000 9.73 0.00 0.00 3.18
2072 2096 0.320858 TGTTGCGCTTCCCATTACGA 60.321 50.000 9.73 0.00 0.00 3.43
2073 2097 1.014352 GTTGCGCTTCCCATTACGAT 58.986 50.000 9.73 0.00 0.00 3.73
2074 2098 1.013596 TTGCGCTTCCCATTACGATG 58.986 50.000 9.73 0.00 0.00 3.84
2084 2108 1.453155 CATTACGATGGGCTATGGGC 58.547 55.000 0.00 0.00 40.90 5.36
2085 2109 1.003580 CATTACGATGGGCTATGGGCT 59.996 52.381 1.86 0.00 41.46 5.19
2086 2110 2.018355 TTACGATGGGCTATGGGCTA 57.982 50.000 1.86 0.00 41.46 3.93
2087 2111 1.557099 TACGATGGGCTATGGGCTAG 58.443 55.000 1.86 0.00 41.46 3.42
2088 2112 1.194781 ACGATGGGCTATGGGCTAGG 61.195 60.000 1.86 0.00 41.46 3.02
2099 2123 3.625099 GGCTAGGCCGTTACAGGA 58.375 61.111 4.61 0.00 39.62 3.86
2100 2124 1.442148 GGCTAGGCCGTTACAGGAG 59.558 63.158 4.61 0.00 39.62 3.69
2101 2125 1.442148 GCTAGGCCGTTACAGGAGG 59.558 63.158 0.00 0.00 0.00 4.30
2102 2126 1.041447 GCTAGGCCGTTACAGGAGGA 61.041 60.000 0.00 0.00 0.00 3.71
2103 2127 1.481871 CTAGGCCGTTACAGGAGGAA 58.518 55.000 0.00 0.00 0.00 3.36
2104 2128 1.829222 CTAGGCCGTTACAGGAGGAAA 59.171 52.381 0.00 0.00 0.00 3.13
2105 2129 0.323957 AGGCCGTTACAGGAGGAAAC 59.676 55.000 0.00 0.00 0.00 2.78
2106 2130 0.035739 GGCCGTTACAGGAGGAAACA 59.964 55.000 0.00 0.00 0.00 2.83
2107 2131 1.339727 GGCCGTTACAGGAGGAAACAT 60.340 52.381 0.00 0.00 0.00 2.71
2108 2132 2.007608 GCCGTTACAGGAGGAAACATC 58.992 52.381 0.00 0.00 0.00 3.06
2109 2133 2.614481 GCCGTTACAGGAGGAAACATCA 60.614 50.000 0.00 0.00 0.00 3.07
2110 2134 3.262420 CCGTTACAGGAGGAAACATCAG 58.738 50.000 0.00 0.00 0.00 2.90
2111 2135 2.673368 CGTTACAGGAGGAAACATCAGC 59.327 50.000 0.00 0.00 0.00 4.26
2112 2136 3.617531 CGTTACAGGAGGAAACATCAGCT 60.618 47.826 0.00 0.00 0.00 4.24
2113 2137 2.486472 ACAGGAGGAAACATCAGCTG 57.514 50.000 7.63 7.63 0.00 4.24
2114 2138 1.701847 ACAGGAGGAAACATCAGCTGT 59.298 47.619 14.67 0.00 40.84 4.40
2115 2139 2.289945 ACAGGAGGAAACATCAGCTGTC 60.290 50.000 14.67 2.90 36.98 3.51
2116 2140 1.980765 AGGAGGAAACATCAGCTGTCA 59.019 47.619 14.67 0.00 36.98 3.58
2117 2141 2.373169 AGGAGGAAACATCAGCTGTCAA 59.627 45.455 14.67 0.00 36.98 3.18
2118 2142 2.485814 GGAGGAAACATCAGCTGTCAAC 59.514 50.000 14.67 2.07 36.98 3.18
2119 2143 3.406764 GAGGAAACATCAGCTGTCAACT 58.593 45.455 14.67 4.29 36.98 3.16
2120 2144 3.406764 AGGAAACATCAGCTGTCAACTC 58.593 45.455 14.67 6.48 36.98 3.01
2121 2145 3.141398 GGAAACATCAGCTGTCAACTCA 58.859 45.455 14.67 0.00 36.98 3.41
2122 2146 3.565482 GGAAACATCAGCTGTCAACTCAA 59.435 43.478 14.67 0.00 36.98 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 4.415881 TCGGAATAGCAGCCAAAATCTA 57.584 40.909 0.00 0.00 0.00 1.98
60 62 8.434392 TGTAGGTTCTACTTACTTTTCATTGGT 58.566 33.333 6.63 0.00 32.59 3.67
405 421 5.147330 TGCTATGAATAACCCAGTATCGG 57.853 43.478 0.00 0.00 0.00 4.18
600 616 3.563479 GGTCATTGAGGGCCTCCTAAAAA 60.563 47.826 30.03 17.59 45.05 1.94
894 911 7.886629 TCCAAATGGGATAAGAGAATTCTTG 57.113 36.000 9.87 0.00 41.51 3.02
1117 1136 4.660168 TCTGGTCCCTCCGATTACTATAC 58.340 47.826 0.00 0.00 39.52 1.47
1191 1210 1.134491 CGGGTCCTTTCCGCTCTAATT 60.134 52.381 0.00 0.00 41.07 1.40
1529 1553 9.554395 AAACATTCCGTTAAATCAAGGATTTTT 57.446 25.926 9.24 0.00 41.64 1.94
1530 1554 9.554395 AAAACATTCCGTTAAATCAAGGATTTT 57.446 25.926 9.24 0.00 41.64 1.82
1534 1558 9.849166 GAATAAAACATTCCGTTAAATCAAGGA 57.151 29.630 0.00 0.00 36.59 3.36
1535 1559 9.632807 TGAATAAAACATTCCGTTAAATCAAGG 57.367 29.630 0.00 0.00 36.59 3.61
1554 1578 9.921637 AGCGGAAAAGAACATAAAATGAATAAA 57.078 25.926 0.00 0.00 0.00 1.40
1555 1579 9.921637 AAGCGGAAAAGAACATAAAATGAATAA 57.078 25.926 0.00 0.00 0.00 1.40
1560 1584 8.958043 GCTATAAGCGGAAAAGAACATAAAATG 58.042 33.333 0.00 0.00 0.00 2.32
1578 1602 2.210961 GGTCCACCTTTCGCTATAAGC 58.789 52.381 0.00 0.00 38.02 3.09
1579 1603 3.195661 GTGGTCCACCTTTCGCTATAAG 58.804 50.000 11.30 0.00 36.82 1.73
1580 1604 2.417651 CGTGGTCCACCTTTCGCTATAA 60.418 50.000 16.60 0.00 36.82 0.98
1581 1605 1.135527 CGTGGTCCACCTTTCGCTATA 59.864 52.381 16.60 0.00 36.82 1.31
1582 1606 0.108329 CGTGGTCCACCTTTCGCTAT 60.108 55.000 16.60 0.00 36.82 2.97
1583 1607 1.290955 CGTGGTCCACCTTTCGCTA 59.709 57.895 16.60 0.00 36.82 4.26
1584 1608 2.030562 CGTGGTCCACCTTTCGCT 59.969 61.111 16.60 0.00 36.82 4.93
1585 1609 3.723348 GCGTGGTCCACCTTTCGC 61.723 66.667 16.60 11.99 40.92 4.70
1586 1610 3.047877 GGCGTGGTCCACCTTTCG 61.048 66.667 16.60 5.44 36.82 3.46
1587 1611 3.047877 CGGCGTGGTCCACCTTTC 61.048 66.667 16.60 3.36 36.82 2.62
1603 1627 4.113815 TCCCTCCCCTTGCATGCG 62.114 66.667 14.09 0.00 0.00 4.73
1604 1628 2.440980 GTCCCTCCCCTTGCATGC 60.441 66.667 11.82 11.82 0.00 4.06
1605 1629 2.276740 GGTCCCTCCCCTTGCATG 59.723 66.667 0.00 0.00 0.00 4.06
1606 1630 3.411517 CGGTCCCTCCCCTTGCAT 61.412 66.667 0.00 0.00 0.00 3.96
1618 1642 4.162690 CTAGTGCCTGCCCGGTCC 62.163 72.222 0.00 0.00 34.25 4.46
1619 1643 4.162690 CCTAGTGCCTGCCCGGTC 62.163 72.222 0.00 0.00 34.25 4.79
1622 1646 4.845580 CAGCCTAGTGCCTGCCCG 62.846 72.222 0.21 0.00 42.71 6.13
1623 1647 3.689002 GACAGCCTAGTGCCTGCCC 62.689 68.421 0.21 0.00 42.71 5.36
1624 1648 2.124942 GACAGCCTAGTGCCTGCC 60.125 66.667 0.21 0.00 42.71 4.85
1625 1649 2.510238 CGACAGCCTAGTGCCTGC 60.510 66.667 0.21 0.00 42.71 4.85
1626 1650 2.510238 GCGACAGCCTAGTGCCTG 60.510 66.667 0.00 1.14 42.71 4.85
1642 1666 3.599704 GATTGCATCTGCCCCGGC 61.600 66.667 0.00 0.00 41.18 6.13
1643 1667 2.124193 TGATTGCATCTGCCCCGG 60.124 61.111 0.00 0.00 41.18 5.73
1644 1668 2.827051 CGTGATTGCATCTGCCCCG 61.827 63.158 0.00 0.00 41.18 5.73
1645 1669 1.442526 CTCGTGATTGCATCTGCCCC 61.443 60.000 0.00 0.00 41.18 5.80
1646 1670 2.020131 CTCGTGATTGCATCTGCCC 58.980 57.895 0.00 0.00 41.18 5.36
1647 1671 1.354506 GCTCGTGATTGCATCTGCC 59.645 57.895 0.00 0.00 41.18 4.85
1648 1672 1.011463 CGCTCGTGATTGCATCTGC 60.011 57.895 0.00 0.00 42.50 4.26
1649 1673 1.011463 GCGCTCGTGATTGCATCTG 60.011 57.895 0.00 0.00 0.00 2.90
1650 1674 1.150567 GAGCGCTCGTGATTGCATCT 61.151 55.000 23.61 0.00 0.00 2.90
1651 1675 1.275066 GAGCGCTCGTGATTGCATC 59.725 57.895 23.61 0.00 0.00 3.91
1652 1676 2.520039 CGAGCGCTCGTGATTGCAT 61.520 57.895 43.16 4.06 46.99 3.96
1653 1677 3.181290 CGAGCGCTCGTGATTGCA 61.181 61.111 43.16 0.00 46.99 4.08
1662 1686 2.551270 CAACACCAACGAGCGCTC 59.449 61.111 27.64 27.64 0.00 5.03
1663 1687 2.972505 CCAACACCAACGAGCGCT 60.973 61.111 11.27 11.27 0.00 5.92
1664 1688 4.025401 CCCAACACCAACGAGCGC 62.025 66.667 0.00 0.00 0.00 5.92
1665 1689 1.635663 GATCCCAACACCAACGAGCG 61.636 60.000 0.00 0.00 0.00 5.03
1666 1690 0.321653 AGATCCCAACACCAACGAGC 60.322 55.000 0.00 0.00 0.00 5.03
1667 1691 1.442769 CAGATCCCAACACCAACGAG 58.557 55.000 0.00 0.00 0.00 4.18
1668 1692 0.036164 CCAGATCCCAACACCAACGA 59.964 55.000 0.00 0.00 0.00 3.85
1669 1693 0.250727 ACCAGATCCCAACACCAACG 60.251 55.000 0.00 0.00 0.00 4.10
1670 1694 1.534729 GACCAGATCCCAACACCAAC 58.465 55.000 0.00 0.00 0.00 3.77
1671 1695 0.404040 GGACCAGATCCCAACACCAA 59.596 55.000 0.00 0.00 42.46 3.67
1672 1696 2.074967 GGACCAGATCCCAACACCA 58.925 57.895 0.00 0.00 42.46 4.17
1681 1705 2.090999 AGGTAAGAGGAGGGACCAGATC 60.091 54.545 0.00 0.00 42.04 2.75
1682 1706 1.940957 AGGTAAGAGGAGGGACCAGAT 59.059 52.381 0.00 0.00 42.04 2.90
1683 1707 1.288335 GAGGTAAGAGGAGGGACCAGA 59.712 57.143 0.00 0.00 42.04 3.86
1684 1708 1.007238 TGAGGTAAGAGGAGGGACCAG 59.993 57.143 0.00 0.00 42.04 4.00
1685 1709 1.089978 TGAGGTAAGAGGAGGGACCA 58.910 55.000 0.00 0.00 42.04 4.02
1686 1710 2.480642 ATGAGGTAAGAGGAGGGACC 57.519 55.000 0.00 0.00 39.35 4.46
1687 1711 3.682999 GCAAATGAGGTAAGAGGAGGGAC 60.683 52.174 0.00 0.00 0.00 4.46
1688 1712 2.505819 GCAAATGAGGTAAGAGGAGGGA 59.494 50.000 0.00 0.00 0.00 4.20
1689 1713 2.507471 AGCAAATGAGGTAAGAGGAGGG 59.493 50.000 0.00 0.00 0.00 4.30
1690 1714 3.922171 AGCAAATGAGGTAAGAGGAGG 57.078 47.619 0.00 0.00 0.00 4.30
1691 1715 6.581171 AAAAAGCAAATGAGGTAAGAGGAG 57.419 37.500 0.00 0.00 0.00 3.69
1720 1744 9.921637 AGCGGAAAAGAACATAAAATGAATAAA 57.078 25.926 0.00 0.00 0.00 1.40
1721 1745 9.921637 AAGCGGAAAAGAACATAAAATGAATAA 57.078 25.926 0.00 0.00 0.00 1.40
1726 1750 8.958043 GCTATAAGCGGAAAAGAACATAAAATG 58.042 33.333 0.00 0.00 0.00 2.32
1744 1768 2.210961 GGTCCACCTTTCGCTATAAGC 58.789 52.381 0.00 0.00 38.02 3.09
1745 1769 3.195661 GTGGTCCACCTTTCGCTATAAG 58.804 50.000 11.30 0.00 36.82 1.73
1746 1770 2.417651 CGTGGTCCACCTTTCGCTATAA 60.418 50.000 16.60 0.00 36.82 0.98
1747 1771 1.135527 CGTGGTCCACCTTTCGCTATA 59.864 52.381 16.60 0.00 36.82 1.31
1748 1772 0.108329 CGTGGTCCACCTTTCGCTAT 60.108 55.000 16.60 0.00 36.82 2.97
1749 1773 1.290955 CGTGGTCCACCTTTCGCTA 59.709 57.895 16.60 0.00 36.82 4.26
1750 1774 2.030562 CGTGGTCCACCTTTCGCT 59.969 61.111 16.60 0.00 36.82 4.93
1751 1775 3.723348 GCGTGGTCCACCTTTCGC 61.723 66.667 16.60 11.99 40.92 4.70
1752 1776 3.047877 GGCGTGGTCCACCTTTCG 61.048 66.667 16.60 5.44 36.82 3.46
1753 1777 3.047877 CGGCGTGGTCCACCTTTC 61.048 66.667 16.60 3.36 36.82 2.62
1769 1793 4.113815 TCCCTCCCCTTGCATGCG 62.114 66.667 14.09 0.00 0.00 4.73
1770 1794 2.440980 GTCCCTCCCCTTGCATGC 60.441 66.667 11.82 11.82 0.00 4.06
1771 1795 2.276740 GGTCCCTCCCCTTGCATG 59.723 66.667 0.00 0.00 0.00 4.06
1772 1796 3.411517 CGGTCCCTCCCCTTGCAT 61.412 66.667 0.00 0.00 0.00 3.96
1784 1808 4.162690 CTAGTGCCTGCCCGGTCC 62.163 72.222 0.00 0.00 34.25 4.46
1785 1809 4.162690 CCTAGTGCCTGCCCGGTC 62.163 72.222 0.00 0.00 34.25 4.79
1788 1812 4.845580 CAGCCTAGTGCCTGCCCG 62.846 72.222 0.21 0.00 42.71 6.13
1789 1813 3.689002 GACAGCCTAGTGCCTGCCC 62.689 68.421 0.21 0.00 42.71 5.36
1790 1814 2.124942 GACAGCCTAGTGCCTGCC 60.125 66.667 0.21 0.00 42.71 4.85
1791 1815 2.510238 CGACAGCCTAGTGCCTGC 60.510 66.667 0.21 0.00 42.71 4.85
1792 1816 2.510238 GCGACAGCCTAGTGCCTG 60.510 66.667 0.00 1.14 42.71 4.85
1793 1817 2.681778 AGCGACAGCCTAGTGCCT 60.682 61.111 0.00 0.00 46.67 4.75
1794 1818 2.202810 GAGCGACAGCCTAGTGCC 60.203 66.667 0.00 0.00 46.67 5.01
1795 1819 1.080995 CAAGAGCGACAGCCTAGTGC 61.081 60.000 0.00 0.00 46.67 4.40
1796 1820 1.080995 GCAAGAGCGACAGCCTAGTG 61.081 60.000 0.00 0.00 46.67 2.74
1797 1821 1.216710 GCAAGAGCGACAGCCTAGT 59.783 57.895 0.00 0.00 46.67 2.57
1798 1822 0.390340 TTGCAAGAGCGACAGCCTAG 60.390 55.000 0.00 0.00 46.67 3.02
1799 1823 1.671166 TTGCAAGAGCGACAGCCTA 59.329 52.632 0.00 0.00 46.67 3.93
1800 1824 2.427320 TTGCAAGAGCGACAGCCT 59.573 55.556 0.00 0.00 46.67 4.58
1806 1830 2.163815 GTCTACTAGGTTGCAAGAGCGA 59.836 50.000 0.00 0.00 46.23 4.93
1807 1831 2.094700 TGTCTACTAGGTTGCAAGAGCG 60.095 50.000 0.00 0.00 46.23 5.03
1808 1832 3.516615 CTGTCTACTAGGTTGCAAGAGC 58.483 50.000 0.00 0.00 42.57 4.09
1809 1833 3.764434 TCCTGTCTACTAGGTTGCAAGAG 59.236 47.826 0.00 0.00 36.67 2.85
1810 1834 3.510360 GTCCTGTCTACTAGGTTGCAAGA 59.490 47.826 0.00 0.00 36.67 3.02
1811 1835 3.368531 GGTCCTGTCTACTAGGTTGCAAG 60.369 52.174 0.00 0.00 36.67 4.01
1812 1836 2.565834 GGTCCTGTCTACTAGGTTGCAA 59.434 50.000 0.00 0.00 36.67 4.08
1813 1837 2.176889 GGTCCTGTCTACTAGGTTGCA 58.823 52.381 0.00 0.00 36.67 4.08
1814 1838 2.094130 GTGGTCCTGTCTACTAGGTTGC 60.094 54.545 0.00 0.00 36.67 4.17
1815 1839 2.496470 GGTGGTCCTGTCTACTAGGTTG 59.504 54.545 0.00 0.00 36.67 3.77
1816 1840 2.817665 GGTGGTCCTGTCTACTAGGTT 58.182 52.381 0.00 0.00 36.67 3.50
1817 1841 1.340795 CGGTGGTCCTGTCTACTAGGT 60.341 57.143 0.00 0.00 36.67 3.08
1818 1842 1.064906 TCGGTGGTCCTGTCTACTAGG 60.065 57.143 0.00 0.00 36.63 3.02
1819 1843 2.414994 TCGGTGGTCCTGTCTACTAG 57.585 55.000 0.00 0.00 0.00 2.57
1820 1844 2.651455 CATCGGTGGTCCTGTCTACTA 58.349 52.381 0.00 0.00 0.00 1.82
1821 1845 1.475403 CATCGGTGGTCCTGTCTACT 58.525 55.000 0.00 0.00 0.00 2.57
1822 1846 0.179108 GCATCGGTGGTCCTGTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
1823 1847 1.327690 GGCATCGGTGGTCCTGTCTA 61.328 60.000 0.00 0.00 0.00 2.59
1824 1848 2.660064 GGCATCGGTGGTCCTGTCT 61.660 63.158 0.00 0.00 0.00 3.41
1825 1849 2.125106 GGCATCGGTGGTCCTGTC 60.125 66.667 0.00 0.00 0.00 3.51
1826 1850 2.063015 TTTGGCATCGGTGGTCCTGT 62.063 55.000 0.00 0.00 0.00 4.00
1827 1851 0.893270 TTTTGGCATCGGTGGTCCTG 60.893 55.000 0.00 0.00 0.00 3.86
1828 1852 0.609131 CTTTTGGCATCGGTGGTCCT 60.609 55.000 0.00 0.00 0.00 3.85
1829 1853 1.595093 CCTTTTGGCATCGGTGGTCC 61.595 60.000 0.00 0.00 0.00 4.46
1830 1854 0.608035 TCCTTTTGGCATCGGTGGTC 60.608 55.000 0.00 0.00 40.12 4.02
1831 1855 0.178975 TTCCTTTTGGCATCGGTGGT 60.179 50.000 0.00 0.00 40.12 4.16
1832 1856 0.965439 TTTCCTTTTGGCATCGGTGG 59.035 50.000 0.00 0.00 40.12 4.61
1833 1857 2.810439 TTTTCCTTTTGGCATCGGTG 57.190 45.000 0.00 0.00 40.12 4.94
1834 1858 3.070878 ACATTTTTCCTTTTGGCATCGGT 59.929 39.130 0.00 0.00 40.12 4.69
1835 1859 3.663025 ACATTTTTCCTTTTGGCATCGG 58.337 40.909 0.00 0.00 40.12 4.18
1836 1860 4.152223 GGAACATTTTTCCTTTTGGCATCG 59.848 41.667 0.00 0.00 40.12 3.84
1837 1861 5.308014 AGGAACATTTTTCCTTTTGGCATC 58.692 37.500 0.00 0.00 46.21 3.91
1838 1862 5.308976 AGGAACATTTTTCCTTTTGGCAT 57.691 34.783 0.00 0.00 46.21 4.40
1839 1863 4.769345 AGGAACATTTTTCCTTTTGGCA 57.231 36.364 0.00 0.00 46.21 4.92
1860 1884 2.711009 ACAGTTCTCCAGTTTCCATGGA 59.289 45.455 11.44 11.44 44.63 3.41
1861 1885 3.146104 ACAGTTCTCCAGTTTCCATGG 57.854 47.619 4.97 4.97 39.33 3.66
1862 1886 3.187227 CGAACAGTTCTCCAGTTTCCATG 59.813 47.826 11.60 0.00 0.00 3.66
1863 1887 3.403038 CGAACAGTTCTCCAGTTTCCAT 58.597 45.455 11.60 0.00 0.00 3.41
1864 1888 2.484770 CCGAACAGTTCTCCAGTTTCCA 60.485 50.000 11.60 0.00 0.00 3.53
1865 1889 2.143925 CCGAACAGTTCTCCAGTTTCC 58.856 52.381 11.60 0.00 0.00 3.13
1866 1890 2.143925 CCCGAACAGTTCTCCAGTTTC 58.856 52.381 11.60 0.00 0.00 2.78
1867 1891 1.202770 CCCCGAACAGTTCTCCAGTTT 60.203 52.381 11.60 0.00 0.00 2.66
1868 1892 0.396811 CCCCGAACAGTTCTCCAGTT 59.603 55.000 11.60 0.00 0.00 3.16
1869 1893 0.471211 TCCCCGAACAGTTCTCCAGT 60.471 55.000 11.60 0.00 0.00 4.00
1870 1894 0.905357 ATCCCCGAACAGTTCTCCAG 59.095 55.000 11.60 0.00 0.00 3.86
1871 1895 0.613260 CATCCCCGAACAGTTCTCCA 59.387 55.000 11.60 0.00 0.00 3.86
1872 1896 0.107654 CCATCCCCGAACAGTTCTCC 60.108 60.000 11.60 0.00 0.00 3.71
1873 1897 0.613777 ACCATCCCCGAACAGTTCTC 59.386 55.000 11.60 0.00 0.00 2.87
1874 1898 1.064825 AACCATCCCCGAACAGTTCT 58.935 50.000 11.60 0.00 0.00 3.01
1875 1899 1.539827 CAAACCATCCCCGAACAGTTC 59.460 52.381 2.85 2.85 0.00 3.01
1876 1900 1.144093 TCAAACCATCCCCGAACAGTT 59.856 47.619 0.00 0.00 0.00 3.16
1877 1901 0.768622 TCAAACCATCCCCGAACAGT 59.231 50.000 0.00 0.00 0.00 3.55
1878 1902 1.539827 GTTCAAACCATCCCCGAACAG 59.460 52.381 0.00 0.00 36.75 3.16
1879 1903 1.611519 GTTCAAACCATCCCCGAACA 58.388 50.000 0.00 0.00 36.75 3.18
1891 1915 4.566759 GCTCACCAAAGAAAAGGTTCAAAC 59.433 41.667 0.00 0.00 35.52 2.93
1892 1916 4.676723 CGCTCACCAAAGAAAAGGTTCAAA 60.677 41.667 0.00 0.00 35.52 2.69
1893 1917 3.181491 CGCTCACCAAAGAAAAGGTTCAA 60.181 43.478 0.00 0.00 35.52 2.69
1894 1918 2.357637 CGCTCACCAAAGAAAAGGTTCA 59.642 45.455 0.00 0.00 35.52 3.18
1895 1919 2.357952 ACGCTCACCAAAGAAAAGGTTC 59.642 45.455 0.00 0.00 35.52 3.62
1896 1920 2.099098 CACGCTCACCAAAGAAAAGGTT 59.901 45.455 0.00 0.00 35.52 3.50
1897 1921 1.676006 CACGCTCACCAAAGAAAAGGT 59.324 47.619 0.00 0.00 39.10 3.50
1898 1922 1.676006 ACACGCTCACCAAAGAAAAGG 59.324 47.619 0.00 0.00 0.00 3.11
1899 1923 3.420839 AACACGCTCACCAAAGAAAAG 57.579 42.857 0.00 0.00 0.00 2.27
1900 1924 3.859411 AAACACGCTCACCAAAGAAAA 57.141 38.095 0.00 0.00 0.00 2.29
1901 1925 3.859411 AAAACACGCTCACCAAAGAAA 57.141 38.095 0.00 0.00 0.00 2.52
1902 1926 3.859411 AAAAACACGCTCACCAAAGAA 57.141 38.095 0.00 0.00 0.00 2.52
1940 1964 2.746269 GCAGCAGCTGAATGACAAAAA 58.254 42.857 27.39 0.00 37.91 1.94
1941 1965 1.335233 CGCAGCAGCTGAATGACAAAA 60.335 47.619 27.39 0.00 39.10 2.44
1942 1966 0.239082 CGCAGCAGCTGAATGACAAA 59.761 50.000 27.39 0.00 39.10 2.83
1943 1967 0.886043 ACGCAGCAGCTGAATGACAA 60.886 50.000 27.39 0.00 39.10 3.18
1944 1968 0.037419 TACGCAGCAGCTGAATGACA 60.037 50.000 27.39 5.79 39.10 3.58
1945 1969 0.371645 GTACGCAGCAGCTGAATGAC 59.628 55.000 27.39 13.21 39.10 3.06
1946 1970 0.740868 GGTACGCAGCAGCTGAATGA 60.741 55.000 27.39 4.60 39.10 2.57
1947 1971 1.717937 GGTACGCAGCAGCTGAATG 59.282 57.895 27.39 16.24 39.10 2.67
1948 1972 4.208632 GGTACGCAGCAGCTGAAT 57.791 55.556 27.39 14.87 39.10 2.57
1960 1984 4.208686 GCAGGAGCTCCCGGTACG 62.209 72.222 29.54 11.79 45.86 3.67
1961 1985 4.208686 CGCAGGAGCTCCCGGTAC 62.209 72.222 29.54 12.99 40.87 3.34
1970 1994 0.525761 CTATAGGAGAGCGCAGGAGC 59.474 60.000 11.47 0.00 37.42 4.70
1971 1995 1.904287 ACTATAGGAGAGCGCAGGAG 58.096 55.000 11.47 0.00 0.00 3.69
1972 1996 2.231529 GAACTATAGGAGAGCGCAGGA 58.768 52.381 11.47 0.00 0.00 3.86
1973 1997 1.957177 TGAACTATAGGAGAGCGCAGG 59.043 52.381 11.47 0.00 0.00 4.85
1974 1998 3.932545 ATGAACTATAGGAGAGCGCAG 57.067 47.619 11.47 0.00 0.00 5.18
1975 1999 4.672587 AAATGAACTATAGGAGAGCGCA 57.327 40.909 11.47 0.00 0.00 6.09
1976 2000 5.050490 TCAAAATGAACTATAGGAGAGCGC 58.950 41.667 0.00 0.00 0.00 5.92
1977 2001 8.085296 AGTATCAAAATGAACTATAGGAGAGCG 58.915 37.037 4.43 0.00 0.00 5.03
1978 2002 9.771534 AAGTATCAAAATGAACTATAGGAGAGC 57.228 33.333 4.43 0.00 0.00 4.09
2004 2028 7.170658 GCTGCCATCAACACATAAAGTTAAAAA 59.829 33.333 0.00 0.00 0.00 1.94
2005 2029 6.644592 GCTGCCATCAACACATAAAGTTAAAA 59.355 34.615 0.00 0.00 0.00 1.52
2006 2030 6.155827 GCTGCCATCAACACATAAAGTTAAA 58.844 36.000 0.00 0.00 0.00 1.52
2007 2031 5.336372 GGCTGCCATCAACACATAAAGTTAA 60.336 40.000 15.17 0.00 0.00 2.01
2008 2032 4.157656 GGCTGCCATCAACACATAAAGTTA 59.842 41.667 15.17 0.00 0.00 2.24
2009 2033 3.056607 GGCTGCCATCAACACATAAAGTT 60.057 43.478 15.17 0.00 0.00 2.66
2010 2034 2.493278 GGCTGCCATCAACACATAAAGT 59.507 45.455 15.17 0.00 0.00 2.66
2011 2035 2.159198 GGGCTGCCATCAACACATAAAG 60.159 50.000 22.05 0.00 0.00 1.85
2012 2036 1.824230 GGGCTGCCATCAACACATAAA 59.176 47.619 22.05 0.00 0.00 1.40
2013 2037 1.473258 GGGCTGCCATCAACACATAA 58.527 50.000 22.05 0.00 0.00 1.90
2014 2038 0.747644 CGGGCTGCCATCAACACATA 60.748 55.000 22.05 0.00 0.00 2.29
2015 2039 2.048023 CGGGCTGCCATCAACACAT 61.048 57.895 22.05 0.00 0.00 3.21
2016 2040 2.118233 TACGGGCTGCCATCAACACA 62.118 55.000 22.05 0.00 0.00 3.72
2017 2041 1.369091 CTACGGGCTGCCATCAACAC 61.369 60.000 22.05 0.00 0.00 3.32
2018 2042 1.078497 CTACGGGCTGCCATCAACA 60.078 57.895 22.05 0.00 0.00 3.33
2019 2043 2.472909 GCTACGGGCTGCCATCAAC 61.473 63.158 22.05 2.58 38.06 3.18
2020 2044 2.124736 GCTACGGGCTGCCATCAA 60.125 61.111 22.05 1.44 38.06 2.57
2029 2053 2.152016 GGATCAAAATAGGCTACGGGC 58.848 52.381 0.00 0.00 40.90 6.13
2030 2054 3.403038 CTGGATCAAAATAGGCTACGGG 58.597 50.000 0.00 0.00 0.00 5.28
2031 2055 2.808543 GCTGGATCAAAATAGGCTACGG 59.191 50.000 0.00 0.00 0.00 4.02
2032 2056 3.496130 CAGCTGGATCAAAATAGGCTACG 59.504 47.826 5.57 0.00 0.00 3.51
2033 2057 4.455606 ACAGCTGGATCAAAATAGGCTAC 58.544 43.478 19.93 0.00 0.00 3.58
2034 2058 4.778213 ACAGCTGGATCAAAATAGGCTA 57.222 40.909 19.93 0.00 0.00 3.93
2035 2059 3.659183 ACAGCTGGATCAAAATAGGCT 57.341 42.857 19.93 0.00 0.00 4.58
2036 2060 3.736126 GCAACAGCTGGATCAAAATAGGC 60.736 47.826 19.93 0.02 0.00 3.93
2037 2061 3.488047 CGCAACAGCTGGATCAAAATAGG 60.488 47.826 19.93 0.00 0.00 2.57
2038 2062 3.688272 CGCAACAGCTGGATCAAAATAG 58.312 45.455 19.93 0.00 0.00 1.73
2039 2063 2.159393 GCGCAACAGCTGGATCAAAATA 60.159 45.455 19.93 0.00 0.00 1.40
2040 2064 1.403249 GCGCAACAGCTGGATCAAAAT 60.403 47.619 19.93 0.00 0.00 1.82
2041 2065 0.039256 GCGCAACAGCTGGATCAAAA 60.039 50.000 19.93 0.00 0.00 2.44
2042 2066 1.580942 GCGCAACAGCTGGATCAAA 59.419 52.632 19.93 0.00 0.00 2.69
2043 2067 3.266964 GCGCAACAGCTGGATCAA 58.733 55.556 19.93 0.00 0.00 2.57
2051 2075 0.179163 GTAATGGGAAGCGCAACAGC 60.179 55.000 11.47 0.00 37.41 4.40
2052 2076 0.096976 CGTAATGGGAAGCGCAACAG 59.903 55.000 11.47 0.00 0.00 3.16
2053 2077 0.320858 TCGTAATGGGAAGCGCAACA 60.321 50.000 11.47 2.52 0.00 3.33
2054 2078 1.014352 ATCGTAATGGGAAGCGCAAC 58.986 50.000 11.47 2.10 0.00 4.17
2055 2079 1.013596 CATCGTAATGGGAAGCGCAA 58.986 50.000 11.47 0.00 0.00 4.85
2056 2080 2.689083 CATCGTAATGGGAAGCGCA 58.311 52.632 11.47 0.00 0.00 6.09
2065 2089 1.003580 AGCCCATAGCCCATCGTAATG 59.996 52.381 0.00 0.00 45.47 1.90
2066 2090 1.362224 AGCCCATAGCCCATCGTAAT 58.638 50.000 0.00 0.00 45.47 1.89
2067 2091 1.899814 CTAGCCCATAGCCCATCGTAA 59.100 52.381 0.00 0.00 45.47 3.18
2068 2092 1.557099 CTAGCCCATAGCCCATCGTA 58.443 55.000 0.00 0.00 45.47 3.43
2069 2093 1.194781 CCTAGCCCATAGCCCATCGT 61.195 60.000 0.00 0.00 45.47 3.73
2070 2094 1.599047 CCTAGCCCATAGCCCATCG 59.401 63.158 0.00 0.00 45.47 3.84
2071 2095 1.301293 GCCTAGCCCATAGCCCATC 59.699 63.158 0.00 0.00 45.47 3.51
2072 2096 2.234296 GGCCTAGCCCATAGCCCAT 61.234 63.158 0.00 0.00 44.06 4.00
2073 2097 2.854032 GGCCTAGCCCATAGCCCA 60.854 66.667 0.00 0.00 44.06 5.36
2082 2106 1.442148 CTCCTGTAACGGCCTAGCC 59.558 63.158 0.00 0.00 46.75 3.93
2083 2107 1.041447 TCCTCCTGTAACGGCCTAGC 61.041 60.000 0.00 0.00 0.00 3.42
2084 2108 1.481871 TTCCTCCTGTAACGGCCTAG 58.518 55.000 0.00 0.00 0.00 3.02
2085 2109 1.551883 GTTTCCTCCTGTAACGGCCTA 59.448 52.381 0.00 0.00 0.00 3.93
2086 2110 0.323957 GTTTCCTCCTGTAACGGCCT 59.676 55.000 0.00 0.00 0.00 5.19
2087 2111 0.035739 TGTTTCCTCCTGTAACGGCC 59.964 55.000 0.00 0.00 0.00 6.13
2088 2112 2.007608 GATGTTTCCTCCTGTAACGGC 58.992 52.381 0.00 0.00 0.00 5.68
2089 2113 3.262420 CTGATGTTTCCTCCTGTAACGG 58.738 50.000 0.00 0.00 0.00 4.44
2090 2114 2.673368 GCTGATGTTTCCTCCTGTAACG 59.327 50.000 0.00 0.00 0.00 3.18
2091 2115 3.686726 CAGCTGATGTTTCCTCCTGTAAC 59.313 47.826 8.42 0.00 0.00 2.50
2092 2116 3.327757 ACAGCTGATGTTTCCTCCTGTAA 59.672 43.478 23.35 0.00 39.96 2.41
2093 2117 2.906389 ACAGCTGATGTTTCCTCCTGTA 59.094 45.455 23.35 0.00 39.96 2.74
2094 2118 1.701847 ACAGCTGATGTTTCCTCCTGT 59.298 47.619 23.35 0.00 39.96 4.00
2095 2119 2.289882 TGACAGCTGATGTTTCCTCCTG 60.290 50.000 23.35 0.00 44.17 3.86
2096 2120 1.980765 TGACAGCTGATGTTTCCTCCT 59.019 47.619 23.35 0.00 44.17 3.69
2097 2121 2.479566 TGACAGCTGATGTTTCCTCC 57.520 50.000 23.35 0.00 44.17 4.30
2098 2122 3.406764 AGTTGACAGCTGATGTTTCCTC 58.593 45.455 23.35 5.14 44.17 3.71
2099 2123 3.181451 TGAGTTGACAGCTGATGTTTCCT 60.181 43.478 23.35 6.21 44.17 3.36
2100 2124 3.141398 TGAGTTGACAGCTGATGTTTCC 58.859 45.455 23.35 4.32 44.17 3.13
2101 2125 4.818534 TTGAGTTGACAGCTGATGTTTC 57.181 40.909 23.35 7.59 44.17 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.