Multiple sequence alignment - TraesCS1A01G147600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G147600 chr1A 100.000 3380 0 0 731 4110 254992931 254996310 0.000000e+00 6242.0
1 TraesCS1A01G147600 chr1A 100.000 437 0 0 1 437 254992201 254992637 0.000000e+00 808.0
2 TraesCS1A01G147600 chr1A 92.220 437 31 2 1 437 456316605 456316172 2.100000e-172 616.0
3 TraesCS1A01G147600 chr1A 100.000 34 0 0 736 769 7295055 7295022 3.430000e-06 63.9
4 TraesCS1A01G147600 chr1D 98.064 2169 27 6 1951 4110 201054761 201056923 0.000000e+00 3759.0
5 TraesCS1A01G147600 chr1D 96.466 1132 36 3 760 1887 201053622 201054753 0.000000e+00 1866.0
6 TraesCS1A01G147600 chr1B 90.088 1584 110 25 1718 3295 288952748 288954290 0.000000e+00 2012.0
7 TraesCS1A01G147600 chr1B 91.743 981 60 10 760 1720 288951181 288952160 0.000000e+00 1343.0
8 TraesCS1A01G147600 chr1B 91.195 318 22 4 3598 3911 288959437 288959752 1.060000e-115 427.0
9 TraesCS1A01G147600 chr1B 92.350 183 12 2 3929 4110 288959741 288959922 4.080000e-65 259.0
10 TraesCS1A01G147600 chr1B 78.472 144 15 10 3417 3544 288958438 288958581 3.410000e-11 80.5
11 TraesCS1A01G147600 chr1B 100.000 35 0 0 732 766 453870525 453870559 9.540000e-07 65.8
12 TraesCS1A01G147600 chr2B 99.314 437 3 0 1 437 695968858 695968422 0.000000e+00 791.0
13 TraesCS1A01G147600 chr7B 98.856 437 5 0 1 437 412554154 412553718 0.000000e+00 780.0
14 TraesCS1A01G147600 chr7B 94.774 421 13 1 1 421 612988076 612987665 0.000000e+00 647.0
15 TraesCS1A01G147600 chr7B 100.000 34 0 0 735 768 685219731 685219764 3.430000e-06 63.9
16 TraesCS1A01G147600 chr3B 98.856 437 4 1 1 437 685868102 685867667 0.000000e+00 778.0
17 TraesCS1A01G147600 chr5A 98.627 437 6 0 1 437 43047395 43046959 0.000000e+00 774.0
18 TraesCS1A01G147600 chr5A 100.000 36 0 0 732 767 23906489 23906524 2.650000e-07 67.6
19 TraesCS1A01G147600 chr5A 100.000 36 0 0 731 766 33168211 33168176 2.650000e-07 67.6
20 TraesCS1A01G147600 chr4B 97.254 437 12 0 1 437 22556712 22556276 0.000000e+00 741.0
21 TraesCS1A01G147600 chr6B 96.750 400 13 0 1 400 608246309 608245910 0.000000e+00 667.0
22 TraesCS1A01G147600 chrUn 98.246 342 6 0 1 342 88900400 88900059 2.110000e-167 599.0
23 TraesCS1A01G147600 chr5D 100.000 36 0 0 731 766 413354879 413354844 2.650000e-07 67.6
24 TraesCS1A01G147600 chr4A 100.000 36 0 0 731 766 519227220 519227255 2.650000e-07 67.6
25 TraesCS1A01G147600 chr7A 86.441 59 4 3 738 793 672985579 672985636 1.230000e-05 62.1
26 TraesCS1A01G147600 chr5B 94.872 39 2 0 731 769 491096331 491096369 1.230000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G147600 chr1A 254992201 254996310 4109 False 3525.0 6242 100.0000 1 4110 2 chr1A.!!$F1 4109
1 TraesCS1A01G147600 chr1D 201053622 201056923 3301 False 2812.5 3759 97.2650 760 4110 2 chr1D.!!$F1 3350
2 TraesCS1A01G147600 chr1B 288951181 288954290 3109 False 1677.5 2012 90.9155 760 3295 2 chr1B.!!$F2 2535
3 TraesCS1A01G147600 chr1B 288958438 288959922 1484 False 255.5 427 87.3390 3417 4110 3 chr1B.!!$F3 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.037160 TTTCCAACCGGTAAGGAGGC 59.963 55.0 23.23 0.0 45.00 4.70 F
1454 1461 0.109781 CGCTGGTTGTTCCCGATTTG 60.110 55.0 0.00 0.0 34.77 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2715 1.167851 CACCCAGCACACTGTAATGG 58.832 55.000 5.25 5.25 42.81 3.16 R
3270 3891 1.203288 TGTTCCAAGGGAATGGCCAAT 60.203 47.619 10.96 0.00 44.04 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.382522 TTTTTGCGCAAAATTGGCCA 58.617 40.000 39.74 25.53 39.69 5.36
36 37 1.382522 TTTTGCGCAAAATTGGCCAA 58.617 40.000 37.21 23.00 35.57 4.52
37 38 1.382522 TTTGCGCAAAATTGGCCAAA 58.617 40.000 31.98 6.40 32.73 3.28
38 39 0.942962 TTGCGCAAAATTGGCCAAAG 59.057 45.000 24.71 13.78 0.00 2.77
39 40 0.105593 TGCGCAAAATTGGCCAAAGA 59.894 45.000 24.71 0.00 0.00 2.52
40 41 1.224965 GCGCAAAATTGGCCAAAGAA 58.775 45.000 24.71 0.00 0.00 2.52
41 42 1.805943 GCGCAAAATTGGCCAAAGAAT 59.194 42.857 24.71 2.04 0.00 2.40
42 43 2.226200 GCGCAAAATTGGCCAAAGAATT 59.774 40.909 24.71 9.50 0.00 2.17
43 44 3.304592 GCGCAAAATTGGCCAAAGAATTT 60.305 39.130 24.71 15.53 40.26 1.82
44 45 4.083590 GCGCAAAATTGGCCAAAGAATTTA 60.084 37.500 24.71 0.00 35.03 1.40
45 46 5.561725 GCGCAAAATTGGCCAAAGAATTTAA 60.562 36.000 24.71 0.00 35.03 1.52
46 47 6.610456 CGCAAAATTGGCCAAAGAATTTAAT 58.390 32.000 24.71 0.00 35.03 1.40
47 48 7.625185 GCGCAAAATTGGCCAAAGAATTTAATA 60.625 33.333 24.71 0.00 35.03 0.98
48 49 8.233190 CGCAAAATTGGCCAAAGAATTTAATAA 58.767 29.630 24.71 0.00 35.03 1.40
49 50 9.340695 GCAAAATTGGCCAAAGAATTTAATAAC 57.659 29.630 24.71 3.72 35.03 1.89
50 51 9.838975 CAAAATTGGCCAAAGAATTTAATAACC 57.161 29.630 24.71 0.00 35.03 2.85
51 52 9.806448 AAAATTGGCCAAAGAATTTAATAACCT 57.194 25.926 24.71 0.00 35.03 3.50
72 73 7.504926 ACCTAATTACTATGTTCCCTTCACA 57.495 36.000 0.00 0.00 0.00 3.58
73 74 7.924541 ACCTAATTACTATGTTCCCTTCACAA 58.075 34.615 0.00 0.00 0.00 3.33
74 75 8.387813 ACCTAATTACTATGTTCCCTTCACAAA 58.612 33.333 0.00 0.00 0.00 2.83
75 76 9.408648 CCTAATTACTATGTTCCCTTCACAAAT 57.591 33.333 0.00 0.00 0.00 2.32
78 79 5.391312 ACTATGTTCCCTTCACAAATTGC 57.609 39.130 0.00 0.00 0.00 3.56
79 80 4.832266 ACTATGTTCCCTTCACAAATTGCA 59.168 37.500 0.00 0.00 0.00 4.08
80 81 4.686191 ATGTTCCCTTCACAAATTGCAA 57.314 36.364 0.00 0.00 0.00 4.08
81 82 3.791245 TGTTCCCTTCACAAATTGCAAC 58.209 40.909 0.00 0.00 0.00 4.17
82 83 3.450457 TGTTCCCTTCACAAATTGCAACT 59.550 39.130 0.00 0.00 0.00 3.16
83 84 4.646945 TGTTCCCTTCACAAATTGCAACTA 59.353 37.500 0.00 0.00 0.00 2.24
84 85 4.846779 TCCCTTCACAAATTGCAACTAC 57.153 40.909 0.00 0.00 0.00 2.73
85 86 3.252215 TCCCTTCACAAATTGCAACTACG 59.748 43.478 0.00 0.00 0.00 3.51
86 87 3.004315 CCCTTCACAAATTGCAACTACGT 59.996 43.478 0.00 0.00 0.00 3.57
87 88 4.499019 CCCTTCACAAATTGCAACTACGTT 60.499 41.667 0.00 0.00 0.00 3.99
88 89 5.040635 CCTTCACAAATTGCAACTACGTTT 58.959 37.500 0.00 0.00 0.00 3.60
89 90 5.518487 CCTTCACAAATTGCAACTACGTTTT 59.482 36.000 0.00 0.00 0.00 2.43
90 91 6.693545 CCTTCACAAATTGCAACTACGTTTTA 59.306 34.615 0.00 0.00 0.00 1.52
91 92 7.381139 CCTTCACAAATTGCAACTACGTTTTAT 59.619 33.333 0.00 0.00 0.00 1.40
92 93 7.616103 TCACAAATTGCAACTACGTTTTATG 57.384 32.000 0.00 0.00 0.00 1.90
93 94 7.418408 TCACAAATTGCAACTACGTTTTATGA 58.582 30.769 0.00 0.00 0.00 2.15
94 95 7.915923 TCACAAATTGCAACTACGTTTTATGAA 59.084 29.630 0.00 0.00 0.00 2.57
95 96 7.995998 CACAAATTGCAACTACGTTTTATGAAC 59.004 33.333 0.00 0.00 0.00 3.18
96 97 7.702772 ACAAATTGCAACTACGTTTTATGAACA 59.297 29.630 0.00 0.00 0.00 3.18
97 98 7.617533 AATTGCAACTACGTTTTATGAACAC 57.382 32.000 0.00 0.00 0.00 3.32
98 99 5.736486 TGCAACTACGTTTTATGAACACA 57.264 34.783 0.00 0.00 0.00 3.72
99 100 6.307031 TGCAACTACGTTTTATGAACACAT 57.693 33.333 0.00 0.00 0.00 3.21
100 101 6.730175 TGCAACTACGTTTTATGAACACATT 58.270 32.000 0.00 0.00 0.00 2.71
101 102 7.862648 TGCAACTACGTTTTATGAACACATTA 58.137 30.769 0.00 0.00 0.00 1.90
102 103 7.799447 TGCAACTACGTTTTATGAACACATTAC 59.201 33.333 0.00 0.00 0.00 1.89
103 104 8.013378 GCAACTACGTTTTATGAACACATTACT 58.987 33.333 0.00 0.00 0.00 2.24
106 107 9.695526 ACTACGTTTTATGAACACATTACTACA 57.304 29.630 0.00 0.00 0.00 2.74
109 110 7.960738 ACGTTTTATGAACACATTACTACATGC 59.039 33.333 0.00 0.00 0.00 4.06
110 111 7.960195 CGTTTTATGAACACATTACTACATGCA 59.040 33.333 0.00 0.00 0.00 3.96
111 112 9.619316 GTTTTATGAACACATTACTACATGCAA 57.381 29.630 0.00 0.00 0.00 4.08
116 117 7.984391 TGAACACATTACTACATGCAAATAGG 58.016 34.615 11.20 0.00 0.00 2.57
117 118 6.377327 ACACATTACTACATGCAAATAGGC 57.623 37.500 11.20 0.00 0.00 3.93
118 119 6.122277 ACACATTACTACATGCAAATAGGCT 58.878 36.000 11.20 0.00 34.04 4.58
119 120 6.603201 ACACATTACTACATGCAAATAGGCTT 59.397 34.615 11.20 0.00 34.04 4.35
120 121 6.914215 CACATTACTACATGCAAATAGGCTTG 59.086 38.462 11.20 0.00 42.67 4.01
121 122 6.828273 ACATTACTACATGCAAATAGGCTTGA 59.172 34.615 11.20 0.00 40.31 3.02
122 123 7.339212 ACATTACTACATGCAAATAGGCTTGAA 59.661 33.333 11.20 0.00 40.31 2.69
123 124 5.567138 ACTACATGCAAATAGGCTTGAAC 57.433 39.130 11.20 0.00 40.31 3.18
124 125 5.009631 ACTACATGCAAATAGGCTTGAACA 58.990 37.500 11.20 0.00 40.31 3.18
125 126 4.445452 ACATGCAAATAGGCTTGAACAG 57.555 40.909 7.85 0.00 40.31 3.16
126 127 3.194116 ACATGCAAATAGGCTTGAACAGG 59.806 43.478 7.85 0.00 40.31 4.00
141 142 7.953393 GCTTGAACAGGCATAGAAAATTTTAC 58.047 34.615 2.75 0.00 33.19 2.01
142 143 7.063426 GCTTGAACAGGCATAGAAAATTTTACC 59.937 37.037 2.75 1.37 33.19 2.85
143 144 7.531857 TGAACAGGCATAGAAAATTTTACCA 57.468 32.000 2.75 0.00 0.00 3.25
144 145 8.133024 TGAACAGGCATAGAAAATTTTACCAT 57.867 30.769 2.75 0.00 0.00 3.55
145 146 8.250332 TGAACAGGCATAGAAAATTTTACCATC 58.750 33.333 2.75 0.00 0.00 3.51
146 147 7.112452 ACAGGCATAGAAAATTTTACCATCC 57.888 36.000 2.75 3.51 0.00 3.51
147 148 6.667414 ACAGGCATAGAAAATTTTACCATCCA 59.333 34.615 2.75 0.00 0.00 3.41
148 149 7.180051 ACAGGCATAGAAAATTTTACCATCCAA 59.820 33.333 2.75 0.00 0.00 3.53
149 150 8.206189 CAGGCATAGAAAATTTTACCATCCAAT 58.794 33.333 2.75 0.00 0.00 3.16
150 151 8.206189 AGGCATAGAAAATTTTACCATCCAATG 58.794 33.333 2.75 0.49 0.00 2.82
167 168 4.123497 CAATGGTGGAGAGTCGTAATGA 57.877 45.455 0.00 0.00 0.00 2.57
168 169 4.697514 CAATGGTGGAGAGTCGTAATGAT 58.302 43.478 0.00 0.00 0.00 2.45
169 170 5.118990 CAATGGTGGAGAGTCGTAATGATT 58.881 41.667 0.00 0.00 0.00 2.57
170 171 6.280643 CAATGGTGGAGAGTCGTAATGATTA 58.719 40.000 0.00 0.00 0.00 1.75
171 172 5.515797 TGGTGGAGAGTCGTAATGATTAG 57.484 43.478 0.00 0.00 0.00 1.73
172 173 4.341235 TGGTGGAGAGTCGTAATGATTAGG 59.659 45.833 0.00 0.00 0.00 2.69
173 174 4.262079 GGTGGAGAGTCGTAATGATTAGGG 60.262 50.000 5.21 0.00 0.00 3.53
174 175 4.341520 GTGGAGAGTCGTAATGATTAGGGT 59.658 45.833 5.21 0.00 0.00 4.34
175 176 4.583489 TGGAGAGTCGTAATGATTAGGGTC 59.417 45.833 5.21 3.45 0.00 4.46
176 177 4.022155 GGAGAGTCGTAATGATTAGGGTCC 60.022 50.000 5.21 3.86 0.00 4.46
177 178 3.568853 AGAGTCGTAATGATTAGGGTCCG 59.431 47.826 5.21 0.00 0.00 4.79
178 179 2.035576 AGTCGTAATGATTAGGGTCCGC 59.964 50.000 5.21 0.00 0.00 5.54
179 180 2.035576 GTCGTAATGATTAGGGTCCGCT 59.964 50.000 5.21 0.00 0.00 5.52
180 181 3.254166 GTCGTAATGATTAGGGTCCGCTA 59.746 47.826 5.21 0.00 0.00 4.26
181 182 3.254166 TCGTAATGATTAGGGTCCGCTAC 59.746 47.826 5.21 0.00 0.00 3.58
182 183 3.255149 CGTAATGATTAGGGTCCGCTACT 59.745 47.826 0.00 0.00 0.00 2.57
183 184 3.753294 AATGATTAGGGTCCGCTACTG 57.247 47.619 0.00 0.00 0.00 2.74
184 185 2.154567 TGATTAGGGTCCGCTACTGT 57.845 50.000 0.00 0.00 0.00 3.55
185 186 1.754803 TGATTAGGGTCCGCTACTGTG 59.245 52.381 0.00 0.00 0.00 3.66
186 187 1.755380 GATTAGGGTCCGCTACTGTGT 59.245 52.381 0.00 0.00 0.00 3.72
187 188 1.636148 TTAGGGTCCGCTACTGTGTT 58.364 50.000 0.00 0.00 0.00 3.32
188 189 1.180029 TAGGGTCCGCTACTGTGTTC 58.820 55.000 0.00 0.00 0.00 3.18
189 190 1.079336 GGGTCCGCTACTGTGTTCC 60.079 63.158 0.00 0.00 0.00 3.62
190 191 1.669440 GGTCCGCTACTGTGTTCCA 59.331 57.895 0.00 0.00 0.00 3.53
191 192 0.249398 GGTCCGCTACTGTGTTCCAT 59.751 55.000 0.00 0.00 0.00 3.41
192 193 1.338769 GGTCCGCTACTGTGTTCCATT 60.339 52.381 0.00 0.00 0.00 3.16
193 194 2.093869 GGTCCGCTACTGTGTTCCATTA 60.094 50.000 0.00 0.00 0.00 1.90
194 195 3.187700 GTCCGCTACTGTGTTCCATTAG 58.812 50.000 0.00 0.00 31.30 1.73
195 196 2.829720 TCCGCTACTGTGTTCCATTAGT 59.170 45.455 0.00 0.00 30.91 2.24
196 197 3.259876 TCCGCTACTGTGTTCCATTAGTT 59.740 43.478 0.00 0.00 30.91 2.24
197 198 4.000988 CCGCTACTGTGTTCCATTAGTTT 58.999 43.478 0.00 0.00 30.91 2.66
198 199 5.047164 TCCGCTACTGTGTTCCATTAGTTTA 60.047 40.000 0.00 0.00 30.91 2.01
199 200 5.815740 CCGCTACTGTGTTCCATTAGTTTAT 59.184 40.000 0.00 0.00 30.91 1.40
200 201 6.315393 CCGCTACTGTGTTCCATTAGTTTATT 59.685 38.462 0.00 0.00 30.91 1.40
201 202 7.493320 CCGCTACTGTGTTCCATTAGTTTATTA 59.507 37.037 0.00 0.00 30.91 0.98
202 203 8.325997 CGCTACTGTGTTCCATTAGTTTATTAC 58.674 37.037 0.00 0.00 30.91 1.89
203 204 9.158233 GCTACTGTGTTCCATTAGTTTATTACA 57.842 33.333 0.00 0.00 30.91 2.41
206 207 8.999431 ACTGTGTTCCATTAGTTTATTACAGTG 58.001 33.333 0.00 0.00 42.16 3.66
207 208 9.214957 CTGTGTTCCATTAGTTTATTACAGTGA 57.785 33.333 0.00 0.00 0.00 3.41
208 209 9.562408 TGTGTTCCATTAGTTTATTACAGTGAA 57.438 29.630 0.00 0.00 0.00 3.18
219 220 9.502091 AGTTTATTACAGTGAAGACATAGCAAA 57.498 29.630 0.00 0.00 0.00 3.68
226 227 8.396272 ACAGTGAAGACATAGCAAATTTTACT 57.604 30.769 0.00 0.00 0.00 2.24
227 228 9.502091 ACAGTGAAGACATAGCAAATTTTACTA 57.498 29.630 0.00 0.00 0.00 1.82
230 231 9.937175 GTGAAGACATAGCAAATTTTACTATCC 57.063 33.333 7.30 4.32 0.00 2.59
231 232 9.679661 TGAAGACATAGCAAATTTTACTATCCA 57.320 29.630 7.30 1.41 0.00 3.41
234 235 9.461312 AGACATAGCAAATTTTACTATCCAACA 57.539 29.630 7.30 0.00 0.00 3.33
235 236 9.722056 GACATAGCAAATTTTACTATCCAACAG 57.278 33.333 7.30 0.90 0.00 3.16
236 237 9.243105 ACATAGCAAATTTTACTATCCAACAGT 57.757 29.630 7.30 1.36 0.00 3.55
237 238 9.507280 CATAGCAAATTTTACTATCCAACAGTG 57.493 33.333 7.30 0.00 0.00 3.66
248 249 3.425578 CAACAGTGGAGAGCCGTAG 57.574 57.895 0.00 0.00 36.79 3.51
249 250 0.603569 CAACAGTGGAGAGCCGTAGT 59.396 55.000 0.00 0.00 36.79 2.73
250 251 1.816835 CAACAGTGGAGAGCCGTAGTA 59.183 52.381 0.00 0.00 36.79 1.82
251 252 2.211250 ACAGTGGAGAGCCGTAGTAA 57.789 50.000 0.00 0.00 36.79 2.24
252 253 2.736347 ACAGTGGAGAGCCGTAGTAAT 58.264 47.619 0.00 0.00 36.79 1.89
253 254 2.427453 ACAGTGGAGAGCCGTAGTAATG 59.573 50.000 0.00 0.00 36.79 1.90
254 255 2.688446 CAGTGGAGAGCCGTAGTAATGA 59.312 50.000 0.00 0.00 36.79 2.57
255 256 3.319405 CAGTGGAGAGCCGTAGTAATGAT 59.681 47.826 0.00 0.00 36.79 2.45
256 257 3.961408 AGTGGAGAGCCGTAGTAATGATT 59.039 43.478 0.00 0.00 36.79 2.57
257 258 5.009710 CAGTGGAGAGCCGTAGTAATGATTA 59.990 44.000 0.00 0.00 36.79 1.75
258 259 5.597182 AGTGGAGAGCCGTAGTAATGATTAA 59.403 40.000 0.00 0.00 36.79 1.40
259 260 6.097839 AGTGGAGAGCCGTAGTAATGATTAAA 59.902 38.462 0.00 0.00 36.79 1.52
260 261 6.421202 GTGGAGAGCCGTAGTAATGATTAAAG 59.579 42.308 0.00 0.00 36.79 1.85
261 262 6.097839 TGGAGAGCCGTAGTAATGATTAAAGT 59.902 38.462 0.00 0.00 36.79 2.66
262 263 6.641723 GGAGAGCCGTAGTAATGATTAAAGTC 59.358 42.308 0.00 0.00 0.00 3.01
263 264 6.514063 AGAGCCGTAGTAATGATTAAAGTCC 58.486 40.000 0.00 0.00 0.00 3.85
264 265 6.097839 AGAGCCGTAGTAATGATTAAAGTCCA 59.902 38.462 0.00 0.00 0.00 4.02
265 266 6.827727 AGCCGTAGTAATGATTAAAGTCCAT 58.172 36.000 0.00 0.00 0.00 3.41
266 267 7.280356 AGCCGTAGTAATGATTAAAGTCCATT 58.720 34.615 0.00 0.00 35.09 3.16
267 268 8.426489 AGCCGTAGTAATGATTAAAGTCCATTA 58.574 33.333 0.00 0.00 33.21 1.90
268 269 8.493547 GCCGTAGTAATGATTAAAGTCCATTAC 58.506 37.037 13.52 13.52 46.26 1.89
269 270 8.985805 CCGTAGTAATGATTAAAGTCCATTACC 58.014 37.037 16.27 6.04 46.71 2.85
270 271 9.537192 CGTAGTAATGATTAAAGTCCATTACCA 57.463 33.333 16.27 5.18 46.71 3.25
273 274 9.920946 AGTAATGATTAAAGTCCATTACCATGT 57.079 29.630 16.27 1.49 46.71 3.21
275 276 7.823745 ATGATTAAAGTCCATTACCATGTCC 57.176 36.000 0.00 0.00 0.00 4.02
276 277 6.126409 TGATTAAAGTCCATTACCATGTCCC 58.874 40.000 0.00 0.00 0.00 4.46
277 278 5.522315 TTAAAGTCCATTACCATGTCCCA 57.478 39.130 0.00 0.00 0.00 4.37
278 279 4.608170 AAAGTCCATTACCATGTCCCAT 57.392 40.909 0.00 0.00 0.00 4.00
279 280 4.608170 AAGTCCATTACCATGTCCCATT 57.392 40.909 0.00 0.00 0.00 3.16
280 281 5.725551 AAGTCCATTACCATGTCCCATTA 57.274 39.130 0.00 0.00 0.00 1.90
281 282 5.310409 AGTCCATTACCATGTCCCATTAG 57.690 43.478 0.00 0.00 0.00 1.73
282 283 4.726825 AGTCCATTACCATGTCCCATTAGT 59.273 41.667 0.00 0.00 0.00 2.24
283 284 5.193728 AGTCCATTACCATGTCCCATTAGTT 59.806 40.000 0.00 0.00 0.00 2.24
284 285 5.891551 GTCCATTACCATGTCCCATTAGTTT 59.108 40.000 0.00 0.00 0.00 2.66
285 286 6.379988 GTCCATTACCATGTCCCATTAGTTTT 59.620 38.462 0.00 0.00 0.00 2.43
286 287 6.957020 TCCATTACCATGTCCCATTAGTTTTT 59.043 34.615 0.00 0.00 0.00 1.94
306 307 1.810959 TACGGTGAATTTCCAACCGG 58.189 50.000 24.01 0.00 46.95 5.28
307 308 0.179012 ACGGTGAATTTCCAACCGGT 60.179 50.000 24.01 0.00 46.95 5.28
308 309 1.072015 ACGGTGAATTTCCAACCGGTA 59.928 47.619 24.01 0.00 46.95 4.02
309 310 2.152830 CGGTGAATTTCCAACCGGTAA 58.847 47.619 8.00 0.00 39.96 2.85
310 311 2.160813 CGGTGAATTTCCAACCGGTAAG 59.839 50.000 8.00 3.21 39.96 2.34
312 313 3.414269 GTGAATTTCCAACCGGTAAGGA 58.586 45.455 21.36 21.36 45.00 3.36
313 314 3.439129 GTGAATTTCCAACCGGTAAGGAG 59.561 47.826 23.23 5.97 45.00 3.69
314 315 2.801077 ATTTCCAACCGGTAAGGAGG 57.199 50.000 23.23 14.08 45.00 4.30
315 316 0.037160 TTTCCAACCGGTAAGGAGGC 59.963 55.000 23.23 0.00 45.00 4.70
316 317 2.125269 CCAACCGGTAAGGAGGCG 60.125 66.667 18.73 0.00 45.00 5.52
317 318 2.818274 CAACCGGTAAGGAGGCGC 60.818 66.667 8.00 0.00 45.00 6.53
318 319 4.446413 AACCGGTAAGGAGGCGCG 62.446 66.667 8.00 0.00 45.00 6.86
340 341 4.407496 CGGAGCGGACTAATTAGAGTAG 57.593 50.000 19.38 8.22 0.00 2.57
341 342 3.814283 CGGAGCGGACTAATTAGAGTAGT 59.186 47.826 19.38 0.00 34.46 2.73
342 343 4.275443 CGGAGCGGACTAATTAGAGTAGTT 59.725 45.833 19.38 5.48 31.88 2.24
343 344 5.521544 GGAGCGGACTAATTAGAGTAGTTG 58.478 45.833 19.38 3.07 31.88 3.16
344 345 5.298777 GGAGCGGACTAATTAGAGTAGTTGA 59.701 44.000 19.38 0.00 31.88 3.18
345 346 6.380095 AGCGGACTAATTAGAGTAGTTGAG 57.620 41.667 19.38 0.00 31.88 3.02
346 347 6.120905 AGCGGACTAATTAGAGTAGTTGAGA 58.879 40.000 19.38 0.00 31.88 3.27
347 348 6.261381 AGCGGACTAATTAGAGTAGTTGAGAG 59.739 42.308 19.38 0.00 31.88 3.20
348 349 6.260493 GCGGACTAATTAGAGTAGTTGAGAGA 59.740 42.308 19.38 0.00 31.88 3.10
349 350 7.632721 CGGACTAATTAGAGTAGTTGAGAGAC 58.367 42.308 19.38 0.00 31.88 3.36
350 351 7.496591 CGGACTAATTAGAGTAGTTGAGAGACT 59.503 40.741 19.38 0.00 31.88 3.24
351 352 8.833493 GGACTAATTAGAGTAGTTGAGAGACTC 58.167 40.741 19.38 0.00 39.96 3.36
352 353 8.428186 ACTAATTAGAGTAGTTGAGAGACTCG 57.572 38.462 19.38 0.00 43.57 4.18
353 354 6.687081 AATTAGAGTAGTTGAGAGACTCGG 57.313 41.667 0.00 0.00 43.57 4.63
354 355 3.706600 AGAGTAGTTGAGAGACTCGGT 57.293 47.619 0.00 0.00 43.57 4.69
355 356 3.602483 AGAGTAGTTGAGAGACTCGGTC 58.398 50.000 0.00 0.00 43.57 4.79
356 357 2.348660 AGTAGTTGAGAGACTCGGTCG 58.651 52.381 0.00 0.00 37.67 4.79
357 358 1.397692 GTAGTTGAGAGACTCGGTCGG 59.602 57.143 0.00 0.00 37.67 4.79
358 359 0.961358 AGTTGAGAGACTCGGTCGGG 60.961 60.000 0.00 0.00 37.67 5.14
359 360 2.341101 TTGAGAGACTCGGTCGGGC 61.341 63.158 0.00 0.00 37.67 6.13
360 361 2.750637 GAGAGACTCGGTCGGGCA 60.751 66.667 0.00 0.00 37.67 5.36
361 362 2.752238 AGAGACTCGGTCGGGCAG 60.752 66.667 0.00 0.00 37.67 4.85
362 363 4.500116 GAGACTCGGTCGGGCAGC 62.500 72.222 0.00 0.00 37.67 5.25
376 377 4.617486 CAGCCGGCGCGTACGATA 62.617 66.667 23.20 0.00 43.93 2.92
377 378 4.323843 AGCCGGCGCGTACGATAG 62.324 66.667 23.20 10.42 43.93 2.08
380 381 4.323843 CGGCGCGTACGATAGCCT 62.324 66.667 31.68 0.00 46.85 4.58
381 382 2.949106 GGCGCGTACGATAGCCTA 59.051 61.111 29.66 0.00 45.67 3.93
382 383 1.505353 GGCGCGTACGATAGCCTAT 59.495 57.895 29.66 0.00 45.67 2.57
383 384 0.729116 GGCGCGTACGATAGCCTATA 59.271 55.000 29.66 0.00 45.67 1.31
384 385 1.131126 GGCGCGTACGATAGCCTATAA 59.869 52.381 29.66 0.00 45.67 0.98
385 386 2.223433 GGCGCGTACGATAGCCTATAAT 60.223 50.000 29.66 0.00 45.67 1.28
386 387 2.782192 GCGCGTACGATAGCCTATAATG 59.218 50.000 21.65 0.00 43.93 1.90
387 388 2.782192 CGCGTACGATAGCCTATAATGC 59.218 50.000 21.65 0.00 43.93 3.56
388 389 2.782192 GCGTACGATAGCCTATAATGCG 59.218 50.000 21.65 2.18 42.67 4.73
389 390 2.782192 CGTACGATAGCCTATAATGCGC 59.218 50.000 10.44 0.00 42.67 6.09
390 391 3.487042 CGTACGATAGCCTATAATGCGCT 60.487 47.826 10.44 0.00 42.67 5.92
391 392 3.152261 ACGATAGCCTATAATGCGCTC 57.848 47.619 9.73 0.00 42.67 5.03
392 393 2.755655 ACGATAGCCTATAATGCGCTCT 59.244 45.455 9.73 0.00 42.67 4.09
393 394 3.111838 CGATAGCCTATAATGCGCTCTG 58.888 50.000 9.73 0.00 34.03 3.35
394 395 3.452474 GATAGCCTATAATGCGCTCTGG 58.548 50.000 9.73 3.52 34.03 3.86
395 396 0.321122 AGCCTATAATGCGCTCTGGC 60.321 55.000 9.73 13.51 39.19 4.85
396 397 0.321122 GCCTATAATGCGCTCTGGCT 60.321 55.000 9.73 0.00 36.32 4.75
397 398 1.879796 GCCTATAATGCGCTCTGGCTT 60.880 52.381 9.73 0.00 36.32 4.35
398 399 2.612972 GCCTATAATGCGCTCTGGCTTA 60.613 50.000 9.73 0.00 36.32 3.09
399 400 3.257393 CCTATAATGCGCTCTGGCTTAG 58.743 50.000 9.73 0.91 36.09 2.18
400 401 2.918712 ATAATGCGCTCTGGCTTAGT 57.081 45.000 9.73 0.00 36.09 2.24
401 402 2.691409 TAATGCGCTCTGGCTTAGTT 57.309 45.000 9.73 0.00 36.09 2.24
402 403 1.826385 AATGCGCTCTGGCTTAGTTT 58.174 45.000 9.73 0.00 36.09 2.66
403 404 2.691409 ATGCGCTCTGGCTTAGTTTA 57.309 45.000 9.73 0.00 36.09 2.01
404 405 2.010145 TGCGCTCTGGCTTAGTTTAG 57.990 50.000 9.73 0.00 36.09 1.85
405 406 0.653114 GCGCTCTGGCTTAGTTTAGC 59.347 55.000 0.00 0.00 40.48 3.09
406 407 0.924090 CGCTCTGGCTTAGTTTAGCG 59.076 55.000 0.00 0.00 45.48 4.26
407 408 1.736032 CGCTCTGGCTTAGTTTAGCGT 60.736 52.381 6.38 0.00 45.60 5.07
408 409 1.661112 GCTCTGGCTTAGTTTAGCGTG 59.339 52.381 0.00 0.00 42.15 5.34
409 410 2.931320 GCTCTGGCTTAGTTTAGCGTGT 60.931 50.000 0.00 0.00 42.15 4.49
410 411 2.924290 CTCTGGCTTAGTTTAGCGTGTC 59.076 50.000 0.00 0.00 42.15 3.67
411 412 2.561419 TCTGGCTTAGTTTAGCGTGTCT 59.439 45.455 0.00 0.00 42.15 3.41
412 413 3.760151 TCTGGCTTAGTTTAGCGTGTCTA 59.240 43.478 0.00 0.00 42.15 2.59
413 414 4.401519 TCTGGCTTAGTTTAGCGTGTCTAT 59.598 41.667 0.00 0.00 42.15 1.98
414 415 5.591472 TCTGGCTTAGTTTAGCGTGTCTATA 59.409 40.000 0.00 0.00 42.15 1.31
415 416 6.264744 TCTGGCTTAGTTTAGCGTGTCTATAT 59.735 38.462 0.00 0.00 42.15 0.86
416 417 7.446319 TCTGGCTTAGTTTAGCGTGTCTATATA 59.554 37.037 0.00 0.00 42.15 0.86
417 418 8.118976 TGGCTTAGTTTAGCGTGTCTATATAT 57.881 34.615 0.00 0.00 42.15 0.86
418 419 9.234827 TGGCTTAGTTTAGCGTGTCTATATATA 57.765 33.333 0.00 0.00 42.15 0.86
748 749 3.843632 GTTTGAGACGTGCATTGCA 57.156 47.368 7.38 7.38 35.60 4.08
768 769 3.507786 CACGTGCATGCTTACTAGTACA 58.492 45.455 20.33 0.00 0.00 2.90
772 773 4.031765 CGTGCATGCTTACTAGTACAACAG 59.968 45.833 20.33 0.00 0.00 3.16
778 779 6.415206 TGCTTACTAGTACAACAGAAGGTT 57.585 37.500 0.91 0.00 41.47 3.50
787 788 7.549615 AGTACAACAGAAGGTTAACTTTGTC 57.450 36.000 7.81 0.00 40.21 3.18
789 790 6.436843 ACAACAGAAGGTTAACTTTGTCTG 57.563 37.500 7.81 11.94 40.21 3.51
882 883 1.668419 CGAGAGCCAAGGGGTATTTG 58.332 55.000 0.00 0.00 36.17 2.32
928 930 3.953775 CCGGGGGCGCCATTCTAT 61.954 66.667 30.85 0.00 0.00 1.98
937 939 0.861837 CGCCATTCTATCGAACAGCC 59.138 55.000 0.00 0.00 30.58 4.85
939 941 1.502231 CCATTCTATCGAACAGCCCG 58.498 55.000 0.00 0.00 30.67 6.13
976 978 3.121544 CCTCCTTATTTCGGCGACTAAC 58.878 50.000 10.16 0.00 0.00 2.34
993 998 1.467920 AACCCCTACGTCTACCGAAG 58.532 55.000 0.00 0.00 40.70 3.79
1053 1058 2.181021 GCACCTCCGTTCGACGAT 59.819 61.111 0.00 0.00 46.05 3.73
1140 1145 2.003301 CTGAAACTAGCTCCTTTCCGC 58.997 52.381 11.62 0.00 0.00 5.54
1187 1192 2.358267 TGTCGTAAAACCCATGCGTTTT 59.642 40.909 21.38 21.38 45.48 2.43
1206 1211 5.673514 GTTTTATCCAGTACGTTATCCCCA 58.326 41.667 0.00 0.00 0.00 4.96
1208 1213 5.733620 TTATCCAGTACGTTATCCCCATC 57.266 43.478 0.00 0.00 0.00 3.51
1245 1250 2.327940 CCCGCCGCATCGATTTTC 59.672 61.111 0.00 0.00 0.00 2.29
1370 1377 1.761174 GGGAGGTTGGAGAACAGCA 59.239 57.895 0.00 0.00 33.27 4.41
1405 1412 1.004044 CAGGTGAGGATTCTTGCCTGT 59.996 52.381 13.76 0.00 38.84 4.00
1431 1438 6.428159 CAGTTTAGCTAATGAGGTGAAACTGT 59.572 38.462 21.57 4.65 41.85 3.55
1454 1461 0.109781 CGCTGGTTGTTCCCGATTTG 60.110 55.000 0.00 0.00 34.77 2.32
1641 1664 9.730420 GTACTGTGACATTTTCAGTGTTTATTT 57.270 29.630 6.68 0.00 41.57 1.40
1736 2349 5.491070 TGCTTAGTTCTGTGCATTCTATGT 58.509 37.500 0.00 0.00 0.00 2.29
1779 2392 5.395768 CGATGAGGGAATCAGGAAGTACTTT 60.396 44.000 10.02 0.00 42.53 2.66
1889 2502 6.515272 TTTCCTTTCTTCTGACCATTATGC 57.485 37.500 0.00 0.00 0.00 3.14
1891 2504 5.188434 TCCTTTCTTCTGACCATTATGCTG 58.812 41.667 0.00 0.00 0.00 4.41
1892 2505 4.201990 CCTTTCTTCTGACCATTATGCTGC 60.202 45.833 0.00 0.00 0.00 5.25
1893 2506 2.554142 TCTTCTGACCATTATGCTGCG 58.446 47.619 0.00 0.00 0.00 5.18
1894 2507 2.168313 TCTTCTGACCATTATGCTGCGA 59.832 45.455 0.00 0.00 0.00 5.10
1896 2509 1.482182 TCTGACCATTATGCTGCGACT 59.518 47.619 0.00 0.00 0.00 4.18
1897 2510 1.863454 CTGACCATTATGCTGCGACTC 59.137 52.381 0.00 0.00 0.00 3.36
1898 2511 1.206849 TGACCATTATGCTGCGACTCA 59.793 47.619 0.00 0.00 0.00 3.41
1899 2512 1.863454 GACCATTATGCTGCGACTCAG 59.137 52.381 0.00 0.00 45.62 3.35
1900 2513 1.208052 ACCATTATGCTGCGACTCAGT 59.792 47.619 0.00 0.00 44.66 3.41
1901 2514 2.283298 CCATTATGCTGCGACTCAGTT 58.717 47.619 0.00 0.00 44.66 3.16
1904 2517 3.868757 TTATGCTGCGACTCAGTTACT 57.131 42.857 0.00 0.00 44.66 2.24
1920 2533 3.631686 AGTTACTGAGTGCATTGCAAACA 59.368 39.130 13.94 14.60 41.47 2.83
1926 2539 2.919229 GAGTGCATTGCAAACACTATGC 59.081 45.455 28.41 21.24 44.40 3.14
1942 2555 1.363744 ATGCTGCGACTCAGTTTAGC 58.636 50.000 0.00 2.81 44.66 3.09
1947 2560 3.370978 GCTGCGACTCAGTTTAGCATTTA 59.629 43.478 4.37 0.00 44.66 1.40
2226 2843 2.564947 ACTCTGTTCAGGATGGTCAGAC 59.435 50.000 0.00 0.00 39.65 3.51
2347 2965 3.185246 TGAAGCTGTAATAGGAGCTGC 57.815 47.619 0.00 0.00 44.97 5.25
3163 3784 5.297029 CGAGATTTTAGGTTCAGATTTCCCC 59.703 44.000 0.00 0.00 0.00 4.81
3270 3891 9.986157 TTCTAACTCTAAATTCCTACTCTGGTA 57.014 33.333 0.00 0.00 0.00 3.25
3390 4011 6.515043 TCAGTTAAGTTCGAACTAAAACCG 57.485 37.500 32.20 27.23 38.57 4.44
3415 4036 5.643777 CGACAAGTATTTTGAACAGAGGGAT 59.356 40.000 0.00 0.00 0.00 3.85
3633 5086 6.800543 TGCAAGTAAAAGTCATGTAAAAGCA 58.199 32.000 0.00 0.00 0.00 3.91
3903 5360 4.734398 AGAGCTCAGTAAGGATCAACAG 57.266 45.455 17.77 0.00 0.00 3.16
3909 5366 5.470098 GCTCAGTAAGGATCAACAGTTGAAA 59.530 40.000 19.92 0.00 43.95 2.69
3963 5420 2.224606 ACAGCTCACAAATGTCACCTG 58.775 47.619 0.00 0.00 0.00 4.00
3983 5440 1.763545 GGGAAGGTAGGAGCTTGGTAG 59.236 57.143 0.00 0.00 35.86 3.18
4078 5535 0.884704 ATTTGCACAACGCCTCGAGT 60.885 50.000 12.31 0.00 41.33 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.382522 TGGCCAATTTTGCGCAAAAA 58.617 40.000 41.77 28.57 42.71 1.94
17 18 1.382522 TTGGCCAATTTTGCGCAAAA 58.617 40.000 40.76 40.76 43.48 2.44
18 19 1.332997 CTTTGGCCAATTTTGCGCAAA 59.667 42.857 30.63 30.63 32.17 3.68
19 20 0.942962 CTTTGGCCAATTTTGCGCAA 59.057 45.000 21.26 21.02 0.00 4.85
20 21 0.105593 TCTTTGGCCAATTTTGCGCA 59.894 45.000 21.26 5.66 0.00 6.09
21 22 1.224965 TTCTTTGGCCAATTTTGCGC 58.775 45.000 21.26 0.00 0.00 6.09
22 23 4.486574 AAATTCTTTGGCCAATTTTGCG 57.513 36.364 21.26 4.17 29.63 4.85
23 24 9.340695 GTTATTAAATTCTTTGGCCAATTTTGC 57.659 29.630 21.26 3.01 34.68 3.68
24 25 9.838975 GGTTATTAAATTCTTTGGCCAATTTTG 57.161 29.630 21.26 10.25 34.68 2.44
25 26 9.806448 AGGTTATTAAATTCTTTGGCCAATTTT 57.194 25.926 21.26 17.75 34.68 1.82
46 47 9.049050 TGTGAAGGGAACATAGTAATTAGGTTA 57.951 33.333 0.00 0.00 36.47 2.85
47 48 7.924541 TGTGAAGGGAACATAGTAATTAGGTT 58.075 34.615 0.00 0.00 38.86 3.50
48 49 7.504926 TGTGAAGGGAACATAGTAATTAGGT 57.495 36.000 0.00 0.00 0.00 3.08
49 50 8.801882 TTTGTGAAGGGAACATAGTAATTAGG 57.198 34.615 0.00 0.00 0.00 2.69
52 53 8.034804 GCAATTTGTGAAGGGAACATAGTAATT 58.965 33.333 0.00 0.00 0.00 1.40
53 54 7.178274 TGCAATTTGTGAAGGGAACATAGTAAT 59.822 33.333 0.00 0.00 0.00 1.89
54 55 6.491745 TGCAATTTGTGAAGGGAACATAGTAA 59.508 34.615 0.00 0.00 0.00 2.24
55 56 6.007076 TGCAATTTGTGAAGGGAACATAGTA 58.993 36.000 0.00 0.00 0.00 1.82
56 57 4.832266 TGCAATTTGTGAAGGGAACATAGT 59.168 37.500 0.00 0.00 0.00 2.12
57 58 5.389859 TGCAATTTGTGAAGGGAACATAG 57.610 39.130 0.00 0.00 0.00 2.23
58 59 5.304101 AGTTGCAATTTGTGAAGGGAACATA 59.696 36.000 0.59 0.00 0.00 2.29
59 60 4.101430 AGTTGCAATTTGTGAAGGGAACAT 59.899 37.500 0.59 0.00 0.00 2.71
60 61 3.450457 AGTTGCAATTTGTGAAGGGAACA 59.550 39.130 0.59 0.00 0.00 3.18
61 62 4.058721 AGTTGCAATTTGTGAAGGGAAC 57.941 40.909 0.59 0.00 0.00 3.62
62 63 4.261405 CGTAGTTGCAATTTGTGAAGGGAA 60.261 41.667 0.59 0.00 0.00 3.97
63 64 3.252215 CGTAGTTGCAATTTGTGAAGGGA 59.748 43.478 0.59 0.00 0.00 4.20
64 65 3.004315 ACGTAGTTGCAATTTGTGAAGGG 59.996 43.478 0.59 0.00 37.78 3.95
65 66 4.223320 ACGTAGTTGCAATTTGTGAAGG 57.777 40.909 0.59 0.00 37.78 3.46
73 74 7.865385 ATGTGTTCATAAAACGTAGTTGCAATT 59.135 29.630 0.59 0.00 40.69 2.32
74 75 7.367285 ATGTGTTCATAAAACGTAGTTGCAAT 58.633 30.769 0.59 0.00 40.69 3.56
75 76 6.730175 ATGTGTTCATAAAACGTAGTTGCAA 58.270 32.000 0.00 0.00 40.69 4.08
76 77 6.307031 ATGTGTTCATAAAACGTAGTTGCA 57.693 33.333 0.00 0.00 40.69 4.08
77 78 8.013378 AGTAATGTGTTCATAAAACGTAGTTGC 58.987 33.333 0.00 0.00 41.28 4.17
80 81 9.695526 TGTAGTAATGTGTTCATAAAACGTAGT 57.304 29.630 0.00 0.00 36.34 2.73
83 84 7.960738 GCATGTAGTAATGTGTTCATAAAACGT 59.039 33.333 0.00 0.00 33.49 3.99
84 85 7.960195 TGCATGTAGTAATGTGTTCATAAAACG 59.040 33.333 0.00 0.00 33.49 3.60
85 86 9.619316 TTGCATGTAGTAATGTGTTCATAAAAC 57.381 29.630 0.00 0.00 33.49 2.43
90 91 8.623903 CCTATTTGCATGTAGTAATGTGTTCAT 58.376 33.333 0.00 0.00 35.59 2.57
91 92 7.415095 GCCTATTTGCATGTAGTAATGTGTTCA 60.415 37.037 0.00 0.00 0.00 3.18
92 93 6.912591 GCCTATTTGCATGTAGTAATGTGTTC 59.087 38.462 0.00 0.00 0.00 3.18
93 94 6.603201 AGCCTATTTGCATGTAGTAATGTGTT 59.397 34.615 0.00 0.00 0.00 3.32
94 95 6.122277 AGCCTATTTGCATGTAGTAATGTGT 58.878 36.000 0.00 0.00 0.00 3.72
95 96 6.624352 AGCCTATTTGCATGTAGTAATGTG 57.376 37.500 0.00 0.00 0.00 3.21
96 97 6.828273 TCAAGCCTATTTGCATGTAGTAATGT 59.172 34.615 0.00 0.00 32.12 2.71
97 98 7.263100 TCAAGCCTATTTGCATGTAGTAATG 57.737 36.000 0.00 0.00 32.12 1.90
98 99 7.339212 TGTTCAAGCCTATTTGCATGTAGTAAT 59.661 33.333 0.00 0.00 32.12 1.89
99 100 6.657117 TGTTCAAGCCTATTTGCATGTAGTAA 59.343 34.615 0.00 0.00 32.12 2.24
100 101 6.176896 TGTTCAAGCCTATTTGCATGTAGTA 58.823 36.000 0.00 0.00 32.12 1.82
101 102 5.009631 TGTTCAAGCCTATTTGCATGTAGT 58.990 37.500 0.00 0.00 32.12 2.73
102 103 5.449588 CCTGTTCAAGCCTATTTGCATGTAG 60.450 44.000 0.00 0.00 32.12 2.74
103 104 4.398988 CCTGTTCAAGCCTATTTGCATGTA 59.601 41.667 0.00 0.00 32.12 2.29
104 105 3.194116 CCTGTTCAAGCCTATTTGCATGT 59.806 43.478 0.00 0.00 32.12 3.21
105 106 3.777478 CCTGTTCAAGCCTATTTGCATG 58.223 45.455 0.00 0.00 0.00 4.06
106 107 2.167075 GCCTGTTCAAGCCTATTTGCAT 59.833 45.455 0.00 0.00 0.00 3.96
107 108 1.545582 GCCTGTTCAAGCCTATTTGCA 59.454 47.619 0.00 0.00 0.00 4.08
108 109 1.545582 TGCCTGTTCAAGCCTATTTGC 59.454 47.619 0.00 0.00 0.00 3.68
109 110 4.883585 TCTATGCCTGTTCAAGCCTATTTG 59.116 41.667 0.00 0.00 0.00 2.32
110 111 5.116084 TCTATGCCTGTTCAAGCCTATTT 57.884 39.130 0.00 0.00 0.00 1.40
111 112 4.778213 TCTATGCCTGTTCAAGCCTATT 57.222 40.909 0.00 0.00 0.00 1.73
112 113 4.778213 TTCTATGCCTGTTCAAGCCTAT 57.222 40.909 0.00 0.00 0.00 2.57
113 114 4.568072 TTTCTATGCCTGTTCAAGCCTA 57.432 40.909 0.00 0.00 0.00 3.93
114 115 3.439857 TTTCTATGCCTGTTCAAGCCT 57.560 42.857 0.00 0.00 0.00 4.58
115 116 4.725790 ATTTTCTATGCCTGTTCAAGCC 57.274 40.909 0.00 0.00 0.00 4.35
116 117 7.063426 GGTAAAATTTTCTATGCCTGTTCAAGC 59.937 37.037 6.72 0.00 0.00 4.01
117 118 8.087750 TGGTAAAATTTTCTATGCCTGTTCAAG 58.912 33.333 6.72 0.00 0.00 3.02
118 119 7.957002 TGGTAAAATTTTCTATGCCTGTTCAA 58.043 30.769 6.72 0.00 0.00 2.69
119 120 7.531857 TGGTAAAATTTTCTATGCCTGTTCA 57.468 32.000 6.72 0.00 0.00 3.18
120 121 7.706607 GGATGGTAAAATTTTCTATGCCTGTTC 59.293 37.037 6.72 3.58 0.00 3.18
121 122 7.180051 TGGATGGTAAAATTTTCTATGCCTGTT 59.820 33.333 6.72 0.00 0.00 3.16
122 123 6.667414 TGGATGGTAAAATTTTCTATGCCTGT 59.333 34.615 6.72 0.00 0.00 4.00
123 124 7.111247 TGGATGGTAAAATTTTCTATGCCTG 57.889 36.000 6.72 0.00 0.00 4.85
124 125 7.732222 TTGGATGGTAAAATTTTCTATGCCT 57.268 32.000 6.72 0.00 0.00 4.75
125 126 7.442062 CCATTGGATGGTAAAATTTTCTATGCC 59.558 37.037 6.72 5.98 45.54 4.40
126 127 8.369218 CCATTGGATGGTAAAATTTTCTATGC 57.631 34.615 6.72 8.53 45.54 3.14
145 146 3.118775 TCATTACGACTCTCCACCATTGG 60.119 47.826 0.00 0.00 45.56 3.16
146 147 4.123497 TCATTACGACTCTCCACCATTG 57.877 45.455 0.00 0.00 0.00 2.82
147 148 5.359194 AATCATTACGACTCTCCACCATT 57.641 39.130 0.00 0.00 0.00 3.16
148 149 5.011125 CCTAATCATTACGACTCTCCACCAT 59.989 44.000 0.00 0.00 0.00 3.55
149 150 4.341235 CCTAATCATTACGACTCTCCACCA 59.659 45.833 0.00 0.00 0.00 4.17
150 151 4.262079 CCCTAATCATTACGACTCTCCACC 60.262 50.000 0.00 0.00 0.00 4.61
151 152 4.341520 ACCCTAATCATTACGACTCTCCAC 59.658 45.833 0.00 0.00 0.00 4.02
152 153 4.543689 ACCCTAATCATTACGACTCTCCA 58.456 43.478 0.00 0.00 0.00 3.86
153 154 4.022155 GGACCCTAATCATTACGACTCTCC 60.022 50.000 0.00 0.00 0.00 3.71
154 155 4.320348 CGGACCCTAATCATTACGACTCTC 60.320 50.000 0.00 0.00 0.00 3.20
155 156 3.568853 CGGACCCTAATCATTACGACTCT 59.431 47.826 0.00 0.00 0.00 3.24
156 157 3.856267 GCGGACCCTAATCATTACGACTC 60.856 52.174 0.00 0.00 0.00 3.36
157 158 2.035576 GCGGACCCTAATCATTACGACT 59.964 50.000 0.00 0.00 0.00 4.18
158 159 2.035576 AGCGGACCCTAATCATTACGAC 59.964 50.000 0.00 0.00 0.00 4.34
159 160 2.313317 AGCGGACCCTAATCATTACGA 58.687 47.619 0.00 0.00 0.00 3.43
160 161 2.814280 AGCGGACCCTAATCATTACG 57.186 50.000 0.00 0.00 0.00 3.18
161 162 4.038883 ACAGTAGCGGACCCTAATCATTAC 59.961 45.833 0.00 0.00 0.00 1.89
162 163 4.038763 CACAGTAGCGGACCCTAATCATTA 59.961 45.833 0.00 0.00 0.00 1.90
163 164 3.039011 ACAGTAGCGGACCCTAATCATT 58.961 45.455 0.00 0.00 0.00 2.57
164 165 2.365617 CACAGTAGCGGACCCTAATCAT 59.634 50.000 0.00 0.00 0.00 2.45
165 166 1.754803 CACAGTAGCGGACCCTAATCA 59.245 52.381 0.00 0.00 0.00 2.57
166 167 1.755380 ACACAGTAGCGGACCCTAATC 59.245 52.381 0.00 0.00 0.00 1.75
167 168 1.861982 ACACAGTAGCGGACCCTAAT 58.138 50.000 0.00 0.00 0.00 1.73
168 169 1.547372 GAACACAGTAGCGGACCCTAA 59.453 52.381 0.00 0.00 0.00 2.69
169 170 1.180029 GAACACAGTAGCGGACCCTA 58.820 55.000 0.00 0.00 0.00 3.53
170 171 1.542187 GGAACACAGTAGCGGACCCT 61.542 60.000 0.00 0.00 0.00 4.34
171 172 1.079336 GGAACACAGTAGCGGACCC 60.079 63.158 0.00 0.00 0.00 4.46
172 173 1.669440 TGGAACACAGTAGCGGACC 59.331 57.895 0.00 0.00 0.00 4.46
193 194 9.502091 TTTGCTATGTCTTCACTGTAATAAACT 57.498 29.630 0.00 0.00 0.00 2.66
200 201 9.502091 AGTAAAATTTGCTATGTCTTCACTGTA 57.498 29.630 0.00 0.00 0.00 2.74
201 202 8.396272 AGTAAAATTTGCTATGTCTTCACTGT 57.604 30.769 0.00 0.00 0.00 3.55
204 205 9.937175 GGATAGTAAAATTTGCTATGTCTTCAC 57.063 33.333 18.54 4.96 38.45 3.18
205 206 9.679661 TGGATAGTAAAATTTGCTATGTCTTCA 57.320 29.630 18.54 8.05 38.45 3.02
208 209 9.461312 TGTTGGATAGTAAAATTTGCTATGTCT 57.539 29.630 18.54 0.00 38.45 3.41
209 210 9.722056 CTGTTGGATAGTAAAATTTGCTATGTC 57.278 33.333 18.54 11.83 38.45 3.06
210 211 9.243105 ACTGTTGGATAGTAAAATTTGCTATGT 57.757 29.630 18.54 8.24 38.45 2.29
211 212 9.507280 CACTGTTGGATAGTAAAATTTGCTATG 57.493 33.333 18.54 7.71 38.45 2.23
229 230 0.108615 CTACGGCTCTCCACTGTTGG 60.109 60.000 0.00 0.00 45.56 3.77
230 231 0.603569 ACTACGGCTCTCCACTGTTG 59.396 55.000 0.00 0.00 0.00 3.33
231 232 2.211250 TACTACGGCTCTCCACTGTT 57.789 50.000 0.00 0.00 0.00 3.16
232 233 2.211250 TTACTACGGCTCTCCACTGT 57.789 50.000 0.00 0.00 0.00 3.55
233 234 2.688446 TCATTACTACGGCTCTCCACTG 59.312 50.000 0.00 0.00 0.00 3.66
234 235 3.014304 TCATTACTACGGCTCTCCACT 57.986 47.619 0.00 0.00 0.00 4.00
235 236 4.323553 AATCATTACTACGGCTCTCCAC 57.676 45.455 0.00 0.00 0.00 4.02
236 237 6.097839 ACTTTAATCATTACTACGGCTCTCCA 59.902 38.462 0.00 0.00 0.00 3.86
237 238 6.514063 ACTTTAATCATTACTACGGCTCTCC 58.486 40.000 0.00 0.00 0.00 3.71
238 239 6.641723 GGACTTTAATCATTACTACGGCTCTC 59.358 42.308 0.00 0.00 0.00 3.20
239 240 6.097839 TGGACTTTAATCATTACTACGGCTCT 59.902 38.462 0.00 0.00 0.00 4.09
240 241 6.278363 TGGACTTTAATCATTACTACGGCTC 58.722 40.000 0.00 0.00 0.00 4.70
241 242 6.229936 TGGACTTTAATCATTACTACGGCT 57.770 37.500 0.00 0.00 0.00 5.52
242 243 7.492352 AATGGACTTTAATCATTACTACGGC 57.508 36.000 0.00 0.00 30.35 5.68
243 244 8.985805 GGTAATGGACTTTAATCATTACTACGG 58.014 37.037 18.61 0.00 45.88 4.02
244 245 9.537192 TGGTAATGGACTTTAATCATTACTACG 57.463 33.333 18.61 0.00 45.88 3.51
247 248 9.920946 ACATGGTAATGGACTTTAATCATTACT 57.079 29.630 18.61 4.37 45.88 2.24
249 250 9.349713 GGACATGGTAATGGACTTTAATCATTA 57.650 33.333 0.00 0.00 38.19 1.90
250 251 7.287696 GGGACATGGTAATGGACTTTAATCATT 59.712 37.037 0.00 0.00 38.19 2.57
251 252 6.777580 GGGACATGGTAATGGACTTTAATCAT 59.222 38.462 0.00 0.00 38.19 2.45
252 253 6.126409 GGGACATGGTAATGGACTTTAATCA 58.874 40.000 0.00 0.00 38.19 2.57
253 254 6.126409 TGGGACATGGTAATGGACTTTAATC 58.874 40.000 0.00 0.00 38.19 1.75
254 255 6.086011 TGGGACATGGTAATGGACTTTAAT 57.914 37.500 0.00 0.00 38.19 1.40
255 256 5.522315 TGGGACATGGTAATGGACTTTAA 57.478 39.130 0.00 0.00 38.19 1.52
283 284 4.499357 CCGGTTGGAAATTCACCGTAAAAA 60.499 41.667 19.11 0.00 41.84 1.94
284 285 3.004524 CCGGTTGGAAATTCACCGTAAAA 59.995 43.478 19.11 0.00 41.84 1.52
285 286 2.553172 CCGGTTGGAAATTCACCGTAAA 59.447 45.455 19.11 0.00 41.84 2.01
286 287 2.152830 CCGGTTGGAAATTCACCGTAA 58.847 47.619 19.11 0.00 41.84 3.18
287 288 1.072015 ACCGGTTGGAAATTCACCGTA 59.928 47.619 19.11 0.00 41.84 4.02
288 289 0.179012 ACCGGTTGGAAATTCACCGT 60.179 50.000 19.11 8.40 41.84 4.83
289 290 1.810959 TACCGGTTGGAAATTCACCG 58.189 50.000 15.04 15.36 42.91 4.94
290 291 2.490509 CCTTACCGGTTGGAAATTCACC 59.509 50.000 15.04 0.00 39.21 4.02
291 292 3.414269 TCCTTACCGGTTGGAAATTCAC 58.586 45.455 21.91 0.00 39.21 3.18
292 293 3.560453 CCTCCTTACCGGTTGGAAATTCA 60.560 47.826 23.49 6.69 39.21 2.57
293 294 3.014623 CCTCCTTACCGGTTGGAAATTC 58.985 50.000 23.49 0.00 39.21 2.17
294 295 2.882643 GCCTCCTTACCGGTTGGAAATT 60.883 50.000 23.49 0.00 39.21 1.82
295 296 1.340697 GCCTCCTTACCGGTTGGAAAT 60.341 52.381 23.49 0.00 39.21 2.17
296 297 0.037160 GCCTCCTTACCGGTTGGAAA 59.963 55.000 23.49 8.61 39.21 3.13
297 298 1.681076 GCCTCCTTACCGGTTGGAA 59.319 57.895 23.49 8.94 39.21 3.53
298 299 2.652095 CGCCTCCTTACCGGTTGGA 61.652 63.158 15.04 20.01 39.21 3.53
299 300 2.125269 CGCCTCCTTACCGGTTGG 60.125 66.667 15.04 16.50 42.84 3.77
300 301 2.818274 GCGCCTCCTTACCGGTTG 60.818 66.667 15.04 6.33 0.00 3.77
301 302 4.446413 CGCGCCTCCTTACCGGTT 62.446 66.667 15.04 0.00 0.00 4.44
318 319 1.337387 ACTCTAATTAGTCCGCTCCGC 59.663 52.381 12.19 0.00 0.00 5.54
319 320 3.814283 ACTACTCTAATTAGTCCGCTCCG 59.186 47.826 12.19 0.00 0.00 4.63
320 321 5.298777 TCAACTACTCTAATTAGTCCGCTCC 59.701 44.000 12.19 0.00 0.00 4.70
321 322 6.260493 TCTCAACTACTCTAATTAGTCCGCTC 59.740 42.308 12.19 0.00 0.00 5.03
322 323 6.120905 TCTCAACTACTCTAATTAGTCCGCT 58.879 40.000 12.19 0.00 0.00 5.52
323 324 6.260493 TCTCTCAACTACTCTAATTAGTCCGC 59.740 42.308 12.19 0.00 0.00 5.54
324 325 7.496591 AGTCTCTCAACTACTCTAATTAGTCCG 59.503 40.741 12.19 5.27 0.00 4.79
325 326 8.741603 AGTCTCTCAACTACTCTAATTAGTCC 57.258 38.462 12.19 0.00 0.00 3.85
326 327 8.545420 CGAGTCTCTCAACTACTCTAATTAGTC 58.455 40.741 12.19 0.00 37.97 2.59
327 328 7.496591 CCGAGTCTCTCAACTACTCTAATTAGT 59.503 40.741 12.19 0.00 37.97 2.24
328 329 7.496591 ACCGAGTCTCTCAACTACTCTAATTAG 59.503 40.741 6.11 6.11 37.97 1.73
329 330 7.337167 ACCGAGTCTCTCAACTACTCTAATTA 58.663 38.462 0.00 0.00 37.97 1.40
330 331 6.181908 ACCGAGTCTCTCAACTACTCTAATT 58.818 40.000 0.00 0.00 37.97 1.40
331 332 5.747342 ACCGAGTCTCTCAACTACTCTAAT 58.253 41.667 0.00 0.00 37.97 1.73
332 333 5.163281 ACCGAGTCTCTCAACTACTCTAA 57.837 43.478 0.00 0.00 37.97 2.10
333 334 4.677514 CGACCGAGTCTCTCAACTACTCTA 60.678 50.000 0.00 0.00 37.97 2.43
334 335 3.602483 GACCGAGTCTCTCAACTACTCT 58.398 50.000 0.00 0.00 37.97 3.24
335 336 2.349275 CGACCGAGTCTCTCAACTACTC 59.651 54.545 0.00 0.00 36.99 2.59
336 337 2.348660 CGACCGAGTCTCTCAACTACT 58.651 52.381 0.00 0.00 0.00 2.57
337 338 1.397692 CCGACCGAGTCTCTCAACTAC 59.602 57.143 0.00 0.00 0.00 2.73
338 339 1.678123 CCCGACCGAGTCTCTCAACTA 60.678 57.143 0.00 0.00 0.00 2.24
339 340 0.961358 CCCGACCGAGTCTCTCAACT 60.961 60.000 0.00 0.00 0.00 3.16
340 341 1.507174 CCCGACCGAGTCTCTCAAC 59.493 63.158 0.00 0.00 0.00 3.18
341 342 2.341101 GCCCGACCGAGTCTCTCAA 61.341 63.158 0.00 0.00 0.00 3.02
342 343 2.750637 GCCCGACCGAGTCTCTCA 60.751 66.667 0.00 0.00 0.00 3.27
343 344 2.750637 TGCCCGACCGAGTCTCTC 60.751 66.667 0.00 0.00 0.00 3.20
344 345 2.752238 CTGCCCGACCGAGTCTCT 60.752 66.667 0.00 0.00 0.00 3.10
345 346 4.500116 GCTGCCCGACCGAGTCTC 62.500 72.222 0.00 0.00 0.00 3.36
359 360 4.617486 TATCGTACGCGCCGGCTG 62.617 66.667 26.68 19.41 38.14 4.85
360 361 4.323843 CTATCGTACGCGCCGGCT 62.324 66.667 26.68 8.66 38.14 5.52
363 364 2.249557 ATAGGCTATCGTACGCGCCG 62.250 60.000 26.03 9.62 46.85 6.46
364 365 0.729116 TATAGGCTATCGTACGCGCC 59.271 55.000 25.53 25.53 42.79 6.53
365 366 2.532531 TTATAGGCTATCGTACGCGC 57.467 50.000 10.96 12.50 38.14 6.86
366 367 2.782192 GCATTATAGGCTATCGTACGCG 59.218 50.000 10.96 3.53 39.92 6.01
367 368 2.782192 CGCATTATAGGCTATCGTACGC 59.218 50.000 10.96 7.19 0.00 4.42
368 369 2.782192 GCGCATTATAGGCTATCGTACG 59.218 50.000 10.96 9.53 0.00 3.67
369 370 4.030134 AGCGCATTATAGGCTATCGTAC 57.970 45.455 10.96 0.00 34.75 3.67
370 371 3.945921 AGAGCGCATTATAGGCTATCGTA 59.054 43.478 10.96 0.00 37.10 3.43
371 372 2.755655 AGAGCGCATTATAGGCTATCGT 59.244 45.455 10.96 0.00 37.10 3.73
372 373 3.111838 CAGAGCGCATTATAGGCTATCG 58.888 50.000 10.96 9.49 37.10 2.92
373 374 3.452474 CCAGAGCGCATTATAGGCTATC 58.548 50.000 10.96 0.00 37.10 2.08
374 375 2.419297 GCCAGAGCGCATTATAGGCTAT 60.419 50.000 11.47 12.41 37.10 2.97
375 376 1.066858 GCCAGAGCGCATTATAGGCTA 60.067 52.381 11.47 0.00 37.10 3.93
376 377 0.321122 GCCAGAGCGCATTATAGGCT 60.321 55.000 11.47 0.00 40.29 4.58
377 378 0.321122 AGCCAGAGCGCATTATAGGC 60.321 55.000 11.47 13.98 46.67 3.93
378 379 2.175878 AAGCCAGAGCGCATTATAGG 57.824 50.000 11.47 3.37 46.67 2.57
379 380 3.919216 ACTAAGCCAGAGCGCATTATAG 58.081 45.455 11.47 5.15 46.67 1.31
380 381 4.336889 AACTAAGCCAGAGCGCATTATA 57.663 40.909 11.47 0.00 46.67 0.98
381 382 2.918712 ACTAAGCCAGAGCGCATTAT 57.081 45.000 11.47 0.00 46.67 1.28
382 383 2.691409 AACTAAGCCAGAGCGCATTA 57.309 45.000 11.47 0.00 46.67 1.90
383 384 1.826385 AAACTAAGCCAGAGCGCATT 58.174 45.000 11.47 0.00 46.67 3.56
384 385 2.555199 CTAAACTAAGCCAGAGCGCAT 58.445 47.619 11.47 0.00 46.67 4.73
385 386 2.007049 GCTAAACTAAGCCAGAGCGCA 61.007 52.381 11.47 0.00 46.67 6.09
386 387 0.653114 GCTAAACTAAGCCAGAGCGC 59.347 55.000 0.00 0.00 46.67 5.92
387 388 0.924090 CGCTAAACTAAGCCAGAGCG 59.076 55.000 0.00 0.00 46.67 5.03
388 389 1.661112 CACGCTAAACTAAGCCAGAGC 59.339 52.381 0.00 0.00 39.43 4.09
389 390 2.924290 GACACGCTAAACTAAGCCAGAG 59.076 50.000 0.00 0.00 39.43 3.35
390 391 2.561419 AGACACGCTAAACTAAGCCAGA 59.439 45.455 0.00 0.00 39.43 3.86
391 392 2.960819 AGACACGCTAAACTAAGCCAG 58.039 47.619 0.00 0.00 39.43 4.85
392 393 4.730949 ATAGACACGCTAAACTAAGCCA 57.269 40.909 0.00 0.00 39.43 4.75
730 731 3.843632 TGCAATGCACGTCTCAAAC 57.156 47.368 2.72 0.00 31.71 2.93
746 747 1.359848 ACTAGTAAGCATGCACGTGC 58.640 50.000 33.11 33.11 45.38 5.34
747 748 3.507786 TGTACTAGTAAGCATGCACGTG 58.492 45.455 21.98 12.28 0.00 4.49
748 749 3.861276 TGTACTAGTAAGCATGCACGT 57.139 42.857 21.98 7.14 0.00 4.49
749 750 3.924073 TGTTGTACTAGTAAGCATGCACG 59.076 43.478 21.98 3.52 0.00 5.34
750 751 5.168569 TCTGTTGTACTAGTAAGCATGCAC 58.831 41.667 21.98 10.48 0.00 4.57
751 752 5.400066 TCTGTTGTACTAGTAAGCATGCA 57.600 39.130 21.98 0.00 0.00 3.96
752 753 5.292101 CCTTCTGTTGTACTAGTAAGCATGC 59.708 44.000 10.51 10.51 0.00 4.06
753 754 6.398918 ACCTTCTGTTGTACTAGTAAGCATG 58.601 40.000 3.61 0.00 0.00 4.06
754 755 6.607004 ACCTTCTGTTGTACTAGTAAGCAT 57.393 37.500 3.61 0.00 0.00 3.79
755 756 6.415206 AACCTTCTGTTGTACTAGTAAGCA 57.585 37.500 3.61 3.46 35.31 3.91
756 757 8.087136 AGTTAACCTTCTGTTGTACTAGTAAGC 58.913 37.037 3.61 0.00 37.83 3.09
757 758 9.978044 AAGTTAACCTTCTGTTGTACTAGTAAG 57.022 33.333 3.61 0.00 37.83 2.34
762 763 8.480501 AGACAAAGTTAACCTTCTGTTGTACTA 58.519 33.333 0.88 0.00 37.83 1.82
768 769 4.947388 TGCAGACAAAGTTAACCTTCTGTT 59.053 37.500 17.74 0.00 41.11 3.16
772 773 5.751243 TTCTGCAGACAAAGTTAACCTTC 57.249 39.130 18.03 0.00 31.27 3.46
787 788 6.753279 TCAACAAATTCTGAAACTTTCTGCAG 59.247 34.615 7.63 7.63 0.00 4.41
789 790 6.753744 ACTCAACAAATTCTGAAACTTTCTGC 59.246 34.615 3.22 0.00 0.00 4.26
882 883 2.059541 GATAGCGGACAGTTATTCGGC 58.940 52.381 0.00 0.00 39.08 5.54
950 952 0.880718 GCCGAAATAAGGAGGAGGCG 60.881 60.000 0.00 0.00 33.43 5.52
976 978 1.978454 ATCTTCGGTAGACGTAGGGG 58.022 55.000 0.00 0.00 44.69 4.79
993 998 2.044123 ACCTCTCCGCCATTGAAATC 57.956 50.000 0.00 0.00 0.00 2.17
1053 1058 4.804420 AGGAGGAGGATGCCGGCA 62.804 66.667 34.80 34.80 0.00 5.69
1176 1181 2.286833 CGTACTGGATAAAACGCATGGG 59.713 50.000 8.44 8.44 0.00 4.00
1187 1192 4.743124 TGATGGGGATAACGTACTGGATA 58.257 43.478 0.00 0.00 0.00 2.59
1206 1211 2.101582 GAGTGAGGTAAGCACGGATGAT 59.898 50.000 0.00 0.00 41.04 2.45
1208 1213 1.471676 GGAGTGAGGTAAGCACGGATG 60.472 57.143 0.00 0.00 41.04 3.51
1245 1250 1.177256 ACAGCAGCAAGAAAGGCCAG 61.177 55.000 5.01 0.00 0.00 4.85
1370 1377 1.852626 CCTGGGACAAGAAGGGGGT 60.853 63.158 0.00 0.00 38.70 4.95
1405 1412 6.769512 AGTTTCACCTCATTAGCTAAACTGA 58.230 36.000 10.85 9.75 35.14 3.41
1431 1438 1.184431 TCGGGAACAACCAGCGTATA 58.816 50.000 0.00 0.00 41.20 1.47
1454 1461 2.952310 AGAGGAAAAGTTGTGGCTTCAC 59.048 45.455 0.00 0.00 41.56 3.18
1641 1664 3.225177 TCCAAACATTAAACCGGTCCA 57.775 42.857 8.04 0.00 0.00 4.02
1736 2349 4.718940 TCGTCTTCAATGTATCTGCAGA 57.281 40.909 20.79 20.79 0.00 4.26
1876 2489 1.482182 AGTCGCAGCATAATGGTCAGA 59.518 47.619 0.00 0.00 0.00 3.27
1896 2509 3.124578 TGCAATGCACTCAGTAACTGA 57.875 42.857 2.72 0.00 34.62 3.41
1897 2510 3.902261 TTGCAATGCACTCAGTAACTG 57.098 42.857 7.72 0.00 38.71 3.16
1898 2511 3.631686 TGTTTGCAATGCACTCAGTAACT 59.368 39.130 7.72 0.00 38.71 2.24
1899 2512 3.730715 GTGTTTGCAATGCACTCAGTAAC 59.269 43.478 20.58 9.35 38.71 2.50
1900 2513 3.631686 AGTGTTTGCAATGCACTCAGTAA 59.368 39.130 23.26 0.00 38.96 2.24
1901 2514 3.213506 AGTGTTTGCAATGCACTCAGTA 58.786 40.909 23.26 0.00 38.96 2.74
1904 2517 3.612241 GCATAGTGTTTGCAATGCACTCA 60.612 43.478 28.73 19.50 43.30 3.41
2101 2715 1.167851 CACCCAGCACACTGTAATGG 58.832 55.000 5.25 5.25 42.81 3.16
2179 2796 8.721133 AAAGGTGATCTATAACCAAAGGTTTT 57.279 30.769 6.76 2.00 44.33 2.43
2347 2965 7.824779 GCCCTAGTATTTCCATATCTTAACTGG 59.175 40.741 0.00 0.00 0.00 4.00
2490 3108 8.115490 ACAAAAGGGATTGAGATTTCTTACTG 57.885 34.615 0.00 0.00 34.38 2.74
2498 3116 5.324409 TGCACTACAAAAGGGATTGAGATT 58.676 37.500 0.00 0.00 34.38 2.40
3163 3784 4.963276 TTTGGGATTTACAATCAGCTCG 57.037 40.909 0.00 0.00 0.00 5.03
3270 3891 1.203288 TGTTCCAAGGGAATGGCCAAT 60.203 47.619 10.96 0.00 44.04 3.16
3390 4011 4.378459 CCCTCTGTTCAAAATACTTGTCGC 60.378 45.833 0.00 0.00 0.00 5.19
3480 4103 8.263640 AGTCATACTCAACAGATATTGCTTCTT 58.736 33.333 0.00 0.00 0.00 2.52
3481 4104 7.710044 CAGTCATACTCAACAGATATTGCTTCT 59.290 37.037 0.00 0.00 0.00 2.85
3482 4105 7.493971 ACAGTCATACTCAACAGATATTGCTTC 59.506 37.037 0.00 0.00 0.00 3.86
3483 4106 7.334090 ACAGTCATACTCAACAGATATTGCTT 58.666 34.615 0.00 0.00 0.00 3.91
3484 4107 6.882656 ACAGTCATACTCAACAGATATTGCT 58.117 36.000 0.00 0.00 0.00 3.91
3903 5360 4.218635 GGGAGAAGATGGGAGTTTTTCAAC 59.781 45.833 0.00 0.00 0.00 3.18
3909 5366 2.348472 TGTGGGAGAAGATGGGAGTTT 58.652 47.619 0.00 0.00 0.00 2.66
3963 5420 1.763545 CTACCAAGCTCCTACCTTCCC 59.236 57.143 0.00 0.00 0.00 3.97
4078 5535 2.646930 CCCTTCTGCAAGCATATGTCA 58.353 47.619 4.29 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.