Multiple sequence alignment - TraesCS1A01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G146300 chr1A 100.000 3409 0 0 1 3409 252512052 252508644 0.000000e+00 6296.0
1 TraesCS1A01G146300 chr2D 97.266 2816 60 10 603 3407 622877785 622874976 0.000000e+00 4758.0
2 TraesCS1A01G146300 chr7A 99.728 2573 7 0 837 3409 204164725 204167297 0.000000e+00 4713.0
3 TraesCS1A01G146300 chr6B 99.572 2573 11 0 837 3409 417232042 417234614 0.000000e+00 4691.0
4 TraesCS1A01G146300 chr7B 99.534 2573 12 0 837 3409 263144094 263141522 0.000000e+00 4686.0
5 TraesCS1A01G146300 chr7B 99.531 2561 12 0 849 3409 446172063 446174623 0.000000e+00 4663.0
6 TraesCS1A01G146300 chr7B 97.674 258 4 2 603 859 446152841 446153097 3.120000e-120 442.0
7 TraesCS1A01G146300 chr7B 83.500 200 20 7 198 384 535826501 535826700 1.260000e-39 174.0
8 TraesCS1A01G146300 chr7B 92.857 56 4 0 196 251 97636033 97636088 7.840000e-12 82.4
9 TraesCS1A01G146300 chr4B 99.456 2573 14 0 837 3409 142053507 142050935 0.000000e+00 4674.0
10 TraesCS1A01G146300 chr4B 99.339 2573 11 3 837 3409 660454864 660452298 0.000000e+00 4652.0
11 TraesCS1A01G146300 chr4B 81.287 171 18 8 195 353 40472349 40472181 3.570000e-25 126.0
12 TraesCS1A01G146300 chr5B 99.531 2561 12 0 849 3409 513600670 513603230 0.000000e+00 4663.0
13 TraesCS1A01G146300 chr5B 97.266 256 5 2 603 857 321476055 321475801 1.880000e-117 433.0
14 TraesCS1A01G146300 chr5B 85.000 200 19 4 196 384 264288709 264288510 3.470000e-45 193.0
15 TraesCS1A01G146300 chr5B 83.173 208 22 6 191 387 527760357 527760562 9.720000e-41 178.0
16 TraesCS1A01G146300 chr4A 99.340 2576 13 4 837 3409 35614646 35612072 0.000000e+00 4660.0
17 TraesCS1A01G146300 chr4A 96.935 261 6 2 603 862 535873667 535873408 1.450000e-118 436.0
18 TraesCS1A01G146300 chr4A 96.552 261 4 3 603 862 35615015 35614759 8.740000e-116 427.0
19 TraesCS1A01G146300 chr1B 98.047 256 5 0 1 256 286711158 286710903 2.410000e-121 446.0
20 TraesCS1A01G146300 chr1B 96.183 262 7 3 599 859 29089402 29089661 3.140000e-115 425.0
21 TraesCS1A01G146300 chr1B 87.047 193 21 2 196 387 633139732 633139921 7.410000e-52 215.0
22 TraesCS1A01G146300 chr1D 98.039 255 5 0 1 255 199869526 199869272 8.680000e-121 444.0
23 TraesCS1A01G146300 chr2B 97.297 259 5 2 602 859 329480850 329481107 4.040000e-119 438.0
24 TraesCS1A01G146300 chr2B 96.935 261 6 2 603 862 338772765 338772506 1.450000e-118 436.0
25 TraesCS1A01G146300 chr2A 95.221 272 2 5 592 859 61657780 61658044 1.460000e-113 420.0
26 TraesCS1A01G146300 chr2A 86.014 143 15 4 244 384 1304505 1304366 7.620000e-32 148.0
27 TraesCS1A01G146300 chr2A 86.250 80 9 2 194 273 606519325 606519248 6.060000e-13 86.1
28 TraesCS1A01G146300 chr5A 83.254 209 23 4 188 384 143576177 143575969 7.510000e-42 182.0
29 TraesCS1A01G146300 chr5A 89.552 134 12 2 243 374 427818803 427818936 5.850000e-38 169.0
30 TraesCS1A01G146300 chr6D 88.235 153 11 3 196 341 453011668 453011516 3.500000e-40 176.0
31 TraesCS1A01G146300 chr5D 89.051 137 13 2 243 377 328727583 328727447 5.850000e-38 169.0
32 TraesCS1A01G146300 chr5D 81.935 155 22 4 1 153 276311463 276311613 3.570000e-25 126.0
33 TraesCS1A01G146300 chr3B 79.524 210 26 10 188 384 137597590 137597795 2.130000e-27 134.0
34 TraesCS1A01G146300 chr6A 87.179 78 7 3 190 266 499802491 499802416 6.060000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G146300 chr1A 252508644 252512052 3408 True 6296.0 6296 100.000 1 3409 1 chr1A.!!$R1 3408
1 TraesCS1A01G146300 chr2D 622874976 622877785 2809 True 4758.0 4758 97.266 603 3407 1 chr2D.!!$R1 2804
2 TraesCS1A01G146300 chr7A 204164725 204167297 2572 False 4713.0 4713 99.728 837 3409 1 chr7A.!!$F1 2572
3 TraesCS1A01G146300 chr6B 417232042 417234614 2572 False 4691.0 4691 99.572 837 3409 1 chr6B.!!$F1 2572
4 TraesCS1A01G146300 chr7B 263141522 263144094 2572 True 4686.0 4686 99.534 837 3409 1 chr7B.!!$R1 2572
5 TraesCS1A01G146300 chr7B 446172063 446174623 2560 False 4663.0 4663 99.531 849 3409 1 chr7B.!!$F3 2560
6 TraesCS1A01G146300 chr4B 142050935 142053507 2572 True 4674.0 4674 99.456 837 3409 1 chr4B.!!$R2 2572
7 TraesCS1A01G146300 chr4B 660452298 660454864 2566 True 4652.0 4652 99.339 837 3409 1 chr4B.!!$R3 2572
8 TraesCS1A01G146300 chr5B 513600670 513603230 2560 False 4663.0 4663 99.531 849 3409 1 chr5B.!!$F1 2560
9 TraesCS1A01G146300 chr4A 35612072 35615015 2943 True 2543.5 4660 97.946 603 3409 2 chr4A.!!$R2 2806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 424 0.400213 AAAACGGAGGGAGTGATGCA 59.600 50.0 0.0 0.0 0.0 3.96 F
424 425 0.620556 AAACGGAGGGAGTGATGCAT 59.379 50.0 0.0 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 2061 0.673956 GCCTCCCGAGTCCTTTTGAC 60.674 60.000 0.0 0.0 44.82 3.18 R
2561 2706 5.368989 CACTCCTAACCAAAGAAGACAAGT 58.631 41.667 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.963796 GCTAAAATGACCATAATGTCCTCTG 58.036 40.000 0.00 0.00 34.25 3.35
25 26 6.543831 GCTAAAATGACCATAATGTCCTCTGT 59.456 38.462 0.00 0.00 34.25 3.41
26 27 7.067494 GCTAAAATGACCATAATGTCCTCTGTT 59.933 37.037 0.00 0.00 34.25 3.16
27 28 6.764308 AAATGACCATAATGTCCTCTGTTG 57.236 37.500 0.00 0.00 34.25 3.33
28 29 4.908601 TGACCATAATGTCCTCTGTTGT 57.091 40.909 0.00 0.00 34.25 3.32
29 30 5.241403 TGACCATAATGTCCTCTGTTGTT 57.759 39.130 0.00 0.00 34.25 2.83
30 31 5.245531 TGACCATAATGTCCTCTGTTGTTC 58.754 41.667 0.00 0.00 34.25 3.18
31 32 5.013079 TGACCATAATGTCCTCTGTTGTTCT 59.987 40.000 0.00 0.00 34.25 3.01
32 33 5.248640 ACCATAATGTCCTCTGTTGTTCTG 58.751 41.667 0.00 0.00 0.00 3.02
33 34 5.221925 ACCATAATGTCCTCTGTTGTTCTGT 60.222 40.000 0.00 0.00 0.00 3.41
34 35 6.013725 ACCATAATGTCCTCTGTTGTTCTGTA 60.014 38.462 0.00 0.00 0.00 2.74
35 36 6.536582 CCATAATGTCCTCTGTTGTTCTGTAG 59.463 42.308 0.00 0.00 0.00 2.74
36 37 5.808366 AATGTCCTCTGTTGTTCTGTAGA 57.192 39.130 0.00 0.00 0.00 2.59
37 38 6.365970 AATGTCCTCTGTTGTTCTGTAGAT 57.634 37.500 0.00 0.00 0.00 1.98
38 39 5.808366 TGTCCTCTGTTGTTCTGTAGATT 57.192 39.130 0.00 0.00 0.00 2.40
39 40 5.541845 TGTCCTCTGTTGTTCTGTAGATTG 58.458 41.667 0.00 0.00 0.00 2.67
40 41 4.932200 GTCCTCTGTTGTTCTGTAGATTGG 59.068 45.833 0.00 0.00 0.00 3.16
41 42 4.020218 TCCTCTGTTGTTCTGTAGATTGGG 60.020 45.833 0.00 0.00 0.00 4.12
42 43 4.020218 CCTCTGTTGTTCTGTAGATTGGGA 60.020 45.833 0.00 0.00 0.00 4.37
43 44 5.513094 CCTCTGTTGTTCTGTAGATTGGGAA 60.513 44.000 0.00 0.00 0.00 3.97
44 45 6.126863 TCTGTTGTTCTGTAGATTGGGAAT 57.873 37.500 0.00 0.00 0.00 3.01
45 46 7.252612 TCTGTTGTTCTGTAGATTGGGAATA 57.747 36.000 0.00 0.00 0.00 1.75
46 47 7.331026 TCTGTTGTTCTGTAGATTGGGAATAG 58.669 38.462 0.00 0.00 0.00 1.73
47 48 6.414732 TGTTGTTCTGTAGATTGGGAATAGG 58.585 40.000 0.00 0.00 0.00 2.57
48 49 6.012858 TGTTGTTCTGTAGATTGGGAATAGGT 60.013 38.462 0.00 0.00 0.00 3.08
49 50 5.989477 TGTTCTGTAGATTGGGAATAGGTG 58.011 41.667 0.00 0.00 0.00 4.00
50 51 4.689612 TCTGTAGATTGGGAATAGGTGC 57.310 45.455 0.00 0.00 0.00 5.01
51 52 4.298626 TCTGTAGATTGGGAATAGGTGCT 58.701 43.478 0.00 0.00 0.00 4.40
52 53 4.101585 TCTGTAGATTGGGAATAGGTGCTG 59.898 45.833 0.00 0.00 0.00 4.41
53 54 4.037222 TGTAGATTGGGAATAGGTGCTGA 58.963 43.478 0.00 0.00 0.00 4.26
54 55 4.660303 TGTAGATTGGGAATAGGTGCTGAT 59.340 41.667 0.00 0.00 0.00 2.90
55 56 4.803329 AGATTGGGAATAGGTGCTGATT 57.197 40.909 0.00 0.00 0.00 2.57
56 57 4.467769 AGATTGGGAATAGGTGCTGATTG 58.532 43.478 0.00 0.00 0.00 2.67
57 58 3.737559 TTGGGAATAGGTGCTGATTGT 57.262 42.857 0.00 0.00 0.00 2.71
58 59 4.853468 TTGGGAATAGGTGCTGATTGTA 57.147 40.909 0.00 0.00 0.00 2.41
59 60 4.150897 TGGGAATAGGTGCTGATTGTAC 57.849 45.455 0.00 0.00 0.00 2.90
60 61 3.780294 TGGGAATAGGTGCTGATTGTACT 59.220 43.478 0.00 0.00 0.00 2.73
61 62 4.130118 GGGAATAGGTGCTGATTGTACTG 58.870 47.826 0.00 0.00 0.00 2.74
62 63 4.384208 GGGAATAGGTGCTGATTGTACTGT 60.384 45.833 0.00 0.00 0.00 3.55
63 64 5.186198 GGAATAGGTGCTGATTGTACTGTT 58.814 41.667 0.00 0.00 0.00 3.16
64 65 6.346096 GGAATAGGTGCTGATTGTACTGTTA 58.654 40.000 0.00 0.00 0.00 2.41
65 66 6.992715 GGAATAGGTGCTGATTGTACTGTTAT 59.007 38.462 0.00 0.00 0.00 1.89
66 67 8.148351 GGAATAGGTGCTGATTGTACTGTTATA 58.852 37.037 0.00 0.00 0.00 0.98
67 68 9.542462 GAATAGGTGCTGATTGTACTGTTATAA 57.458 33.333 0.00 0.00 0.00 0.98
69 70 9.712305 ATAGGTGCTGATTGTACTGTTATAATC 57.288 33.333 0.00 0.00 36.70 1.75
70 71 6.701841 AGGTGCTGATTGTACTGTTATAATCG 59.298 38.462 0.00 0.00 38.20 3.34
71 72 6.700081 GGTGCTGATTGTACTGTTATAATCGA 59.300 38.462 0.00 0.00 38.20 3.59
72 73 7.223971 GGTGCTGATTGTACTGTTATAATCGAA 59.776 37.037 0.00 0.00 38.20 3.71
73 74 8.600625 GTGCTGATTGTACTGTTATAATCGAAA 58.399 33.333 0.00 0.00 38.20 3.46
74 75 9.325198 TGCTGATTGTACTGTTATAATCGAAAT 57.675 29.630 0.00 0.00 38.20 2.17
75 76 9.586150 GCTGATTGTACTGTTATAATCGAAATG 57.414 33.333 0.00 0.00 38.20 2.32
81 82 9.863845 TGTACTGTTATAATCGAAATGACTTGA 57.136 29.630 0.00 0.00 0.00 3.02
90 91 7.856145 AATCGAAATGACTTGATTAAGAGCT 57.144 32.000 3.94 0.00 37.36 4.09
91 92 6.893958 TCGAAATGACTTGATTAAGAGCTC 57.106 37.500 5.27 5.27 37.36 4.09
92 93 6.634805 TCGAAATGACTTGATTAAGAGCTCT 58.365 36.000 11.45 11.45 37.36 4.09
93 94 7.099764 TCGAAATGACTTGATTAAGAGCTCTT 58.900 34.615 30.63 30.63 37.36 2.85
94 95 7.604164 TCGAAATGACTTGATTAAGAGCTCTTT 59.396 33.333 32.70 17.21 37.36 2.52
95 96 8.233190 CGAAATGACTTGATTAAGAGCTCTTTT 58.767 33.333 32.70 20.78 37.36 2.27
96 97 9.905171 GAAATGACTTGATTAAGAGCTCTTTTT 57.095 29.630 32.70 21.41 37.36 1.94
97 98 9.688592 AAATGACTTGATTAAGAGCTCTTTTTG 57.311 29.630 32.70 18.45 37.36 2.44
98 99 7.807977 TGACTTGATTAAGAGCTCTTTTTGT 57.192 32.000 32.70 21.05 37.36 2.83
99 100 7.865707 TGACTTGATTAAGAGCTCTTTTTGTC 58.134 34.615 32.70 26.30 37.36 3.18
100 101 6.892691 ACTTGATTAAGAGCTCTTTTTGTCG 58.107 36.000 32.70 19.12 37.36 4.35
101 102 5.283060 TGATTAAGAGCTCTTTTTGTCGC 57.717 39.130 32.70 15.71 37.40 5.19
102 103 4.754618 TGATTAAGAGCTCTTTTTGTCGCA 59.245 37.500 32.70 17.78 37.40 5.10
103 104 4.732285 TTAAGAGCTCTTTTTGTCGCAG 57.268 40.909 32.70 0.00 37.40 5.18
104 105 2.533266 AGAGCTCTTTTTGTCGCAGA 57.467 45.000 11.45 0.00 0.00 4.26
105 106 3.051081 AGAGCTCTTTTTGTCGCAGAT 57.949 42.857 11.45 0.00 40.67 2.90
106 107 3.406764 AGAGCTCTTTTTGTCGCAGATT 58.593 40.909 11.45 0.00 40.67 2.40
107 108 3.188048 AGAGCTCTTTTTGTCGCAGATTG 59.812 43.478 11.45 0.00 40.67 2.67
108 109 2.880890 AGCTCTTTTTGTCGCAGATTGT 59.119 40.909 0.00 0.00 40.67 2.71
109 110 3.058639 AGCTCTTTTTGTCGCAGATTGTC 60.059 43.478 0.00 0.00 40.67 3.18
110 111 3.473367 CTCTTTTTGTCGCAGATTGTCG 58.527 45.455 0.00 0.00 40.67 4.35
111 112 2.223144 TCTTTTTGTCGCAGATTGTCGG 59.777 45.455 0.00 0.00 40.67 4.79
112 113 1.588674 TTTTGTCGCAGATTGTCGGT 58.411 45.000 0.00 0.00 40.67 4.69
113 114 1.588674 TTTGTCGCAGATTGTCGGTT 58.411 45.000 0.00 0.00 40.67 4.44
114 115 1.588674 TTGTCGCAGATTGTCGGTTT 58.411 45.000 0.00 0.00 40.67 3.27
115 116 1.588674 TGTCGCAGATTGTCGGTTTT 58.411 45.000 0.00 0.00 40.67 2.43
116 117 1.529438 TGTCGCAGATTGTCGGTTTTC 59.471 47.619 0.00 0.00 40.67 2.29
117 118 1.529438 GTCGCAGATTGTCGGTTTTCA 59.471 47.619 0.00 0.00 40.67 2.69
118 119 2.159627 GTCGCAGATTGTCGGTTTTCAT 59.840 45.455 0.00 0.00 40.67 2.57
119 120 2.159430 TCGCAGATTGTCGGTTTTCATG 59.841 45.455 0.00 0.00 0.00 3.07
120 121 2.728846 CGCAGATTGTCGGTTTTCATGG 60.729 50.000 0.00 0.00 0.00 3.66
121 122 2.228822 GCAGATTGTCGGTTTTCATGGT 59.771 45.455 0.00 0.00 0.00 3.55
122 123 3.305335 GCAGATTGTCGGTTTTCATGGTT 60.305 43.478 0.00 0.00 0.00 3.67
123 124 4.795962 GCAGATTGTCGGTTTTCATGGTTT 60.796 41.667 0.00 0.00 0.00 3.27
124 125 5.288804 CAGATTGTCGGTTTTCATGGTTTT 58.711 37.500 0.00 0.00 0.00 2.43
125 126 5.752955 CAGATTGTCGGTTTTCATGGTTTTT 59.247 36.000 0.00 0.00 0.00 1.94
126 127 6.920758 CAGATTGTCGGTTTTCATGGTTTTTA 59.079 34.615 0.00 0.00 0.00 1.52
127 128 7.436673 CAGATTGTCGGTTTTCATGGTTTTTAA 59.563 33.333 0.00 0.00 0.00 1.52
128 129 6.889019 TTGTCGGTTTTCATGGTTTTTAAC 57.111 33.333 0.00 0.00 0.00 2.01
129 130 6.210287 TGTCGGTTTTCATGGTTTTTAACT 57.790 33.333 0.00 0.00 0.00 2.24
130 131 6.037098 TGTCGGTTTTCATGGTTTTTAACTG 58.963 36.000 0.00 0.00 0.00 3.16
131 132 6.127703 TGTCGGTTTTCATGGTTTTTAACTGA 60.128 34.615 0.00 0.00 0.00 3.41
132 133 6.752815 GTCGGTTTTCATGGTTTTTAACTGAA 59.247 34.615 0.00 0.00 33.97 3.02
133 134 7.275999 GTCGGTTTTCATGGTTTTTAACTGAAA 59.724 33.333 0.00 0.00 35.24 2.69
134 135 7.982354 TCGGTTTTCATGGTTTTTAACTGAAAT 59.018 29.630 0.00 0.00 36.26 2.17
135 136 8.608317 CGGTTTTCATGGTTTTTAACTGAAATT 58.392 29.630 0.00 0.00 36.26 1.82
152 153 9.814899 AACTGAAATTACAATTGTTTGATGTCA 57.185 25.926 17.78 16.31 36.64 3.58
153 154 9.985730 ACTGAAATTACAATTGTTTGATGTCAT 57.014 25.926 17.78 7.24 36.64 3.06
160 161 7.750229 ACAATTGTTTGATGTCATAGACAGT 57.250 32.000 4.92 0.00 39.83 3.55
161 162 7.587629 ACAATTGTTTGATGTCATAGACAGTG 58.412 34.615 4.92 0.00 39.83 3.66
162 163 7.229306 ACAATTGTTTGATGTCATAGACAGTGT 59.771 33.333 4.92 0.00 39.83 3.55
163 164 8.720562 CAATTGTTTGATGTCATAGACAGTGTA 58.279 33.333 0.00 0.00 46.04 2.90
164 165 9.453572 AATTGTTTGATGTCATAGACAGTGTAT 57.546 29.630 0.00 0.00 46.04 2.29
165 166 8.846943 TTGTTTGATGTCATAGACAGTGTATT 57.153 30.769 0.00 0.00 46.04 1.89
166 167 8.846943 TGTTTGATGTCATAGACAGTGTATTT 57.153 30.769 0.00 0.00 46.04 1.40
167 168 9.936759 TGTTTGATGTCATAGACAGTGTATTTA 57.063 29.630 0.00 0.00 46.04 1.40
179 180 8.986477 AGACAGTGTATTTAAATGATTTTGGC 57.014 30.769 11.05 5.36 0.00 4.52
180 181 8.584157 AGACAGTGTATTTAAATGATTTTGGCA 58.416 29.630 11.05 0.00 0.00 4.92
181 182 9.369904 GACAGTGTATTTAAATGATTTTGGCAT 57.630 29.630 11.05 0.00 0.00 4.40
188 189 8.983702 ATTTAAATGATTTTGGCATATTGGCT 57.016 26.923 0.00 0.00 44.10 4.75
193 194 9.661563 AAATGATTTTGGCATATTGGCTATATG 57.338 29.630 20.16 20.16 45.95 1.78
194 195 8.598202 ATGATTTTGGCATATTGGCTATATGA 57.402 30.769 26.12 10.30 46.05 2.15
195 196 8.598202 TGATTTTGGCATATTGGCTATATGAT 57.402 30.769 26.12 13.80 46.05 2.45
196 197 9.697990 TGATTTTGGCATATTGGCTATATGATA 57.302 29.630 26.12 14.25 46.05 2.15
197 198 9.956720 GATTTTGGCATATTGGCTATATGATAC 57.043 33.333 26.12 17.19 46.05 2.24
198 199 9.705103 ATTTTGGCATATTGGCTATATGATACT 57.295 29.630 26.12 7.76 46.05 2.12
199 200 8.737168 TTTGGCATATTGGCTATATGATACTC 57.263 34.615 26.12 12.00 46.05 2.59
200 201 6.830912 TGGCATATTGGCTATATGATACTCC 58.169 40.000 26.12 18.63 46.05 3.85
201 202 6.183361 TGGCATATTGGCTATATGATACTCCC 60.183 42.308 26.12 18.09 46.05 4.30
202 203 6.043706 GGCATATTGGCTATATGATACTCCCT 59.956 42.308 26.12 0.00 46.05 4.20
203 204 7.158021 GCATATTGGCTATATGATACTCCCTC 58.842 42.308 26.12 7.19 46.05 4.30
204 205 7.675062 CATATTGGCTATATGATACTCCCTCC 58.325 42.308 19.90 0.00 46.05 4.30
205 206 3.632333 TGGCTATATGATACTCCCTCCG 58.368 50.000 0.00 0.00 0.00 4.63
206 207 3.011369 TGGCTATATGATACTCCCTCCGT 59.989 47.826 0.00 0.00 0.00 4.69
207 208 4.024670 GGCTATATGATACTCCCTCCGTT 58.975 47.826 0.00 0.00 0.00 4.44
208 209 4.466726 GGCTATATGATACTCCCTCCGTTT 59.533 45.833 0.00 0.00 0.00 3.60
209 210 5.046520 GGCTATATGATACTCCCTCCGTTTT 60.047 44.000 0.00 0.00 0.00 2.43
210 211 6.465084 GCTATATGATACTCCCTCCGTTTTT 58.535 40.000 0.00 0.00 0.00 1.94
211 212 7.310237 GGCTATATGATACTCCCTCCGTTTTTA 60.310 40.741 0.00 0.00 0.00 1.52
212 213 8.258708 GCTATATGATACTCCCTCCGTTTTTAT 58.741 37.037 0.00 0.00 0.00 1.40
216 217 8.672823 ATGATACTCCCTCCGTTTTTATTTAC 57.327 34.615 0.00 0.00 0.00 2.01
217 218 7.854337 TGATACTCCCTCCGTTTTTATTTACT 58.146 34.615 0.00 0.00 0.00 2.24
218 219 7.983484 TGATACTCCCTCCGTTTTTATTTACTC 59.017 37.037 0.00 0.00 0.00 2.59
219 220 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
220 221 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
221 222 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
222 223 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
223 224 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
224 225 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
225 226 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
226 227 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
237 238 8.630278 TTTACTCTGCATATTAGTTTCGTCTC 57.370 34.615 0.00 0.00 0.00 3.36
238 239 6.208988 ACTCTGCATATTAGTTTCGTCTCA 57.791 37.500 0.00 0.00 0.00 3.27
239 240 6.631016 ACTCTGCATATTAGTTTCGTCTCAA 58.369 36.000 0.00 0.00 0.00 3.02
240 241 6.754209 ACTCTGCATATTAGTTTCGTCTCAAG 59.246 38.462 0.00 0.00 0.00 3.02
241 242 6.631016 TCTGCATATTAGTTTCGTCTCAAGT 58.369 36.000 0.00 0.00 0.00 3.16
242 243 6.752351 TCTGCATATTAGTTTCGTCTCAAGTC 59.248 38.462 0.00 0.00 0.00 3.01
243 244 6.394809 TGCATATTAGTTTCGTCTCAAGTCA 58.605 36.000 0.00 0.00 0.00 3.41
244 245 6.871492 TGCATATTAGTTTCGTCTCAAGTCAA 59.129 34.615 0.00 0.00 0.00 3.18
245 246 7.386573 TGCATATTAGTTTCGTCTCAAGTCAAA 59.613 33.333 0.00 0.00 0.00 2.69
246 247 7.688578 GCATATTAGTTTCGTCTCAAGTCAAAC 59.311 37.037 0.00 0.00 0.00 2.93
247 248 8.926710 CATATTAGTTTCGTCTCAAGTCAAACT 58.073 33.333 0.00 0.00 39.85 2.66
248 249 7.787725 ATTAGTTTCGTCTCAAGTCAAACTT 57.212 32.000 1.03 0.00 39.39 2.66
249 250 7.605410 TTAGTTTCGTCTCAAGTCAAACTTT 57.395 32.000 1.03 0.00 36.03 2.66
250 251 5.869350 AGTTTCGTCTCAAGTCAAACTTTG 58.131 37.500 0.00 0.00 36.03 2.77
251 252 4.875544 TTCGTCTCAAGTCAAACTTTGG 57.124 40.909 1.62 0.00 36.03 3.28
252 253 2.612212 TCGTCTCAAGTCAAACTTTGGC 59.388 45.455 0.00 0.00 36.03 4.52
253 254 2.287009 CGTCTCAAGTCAAACTTTGGCC 60.287 50.000 0.00 0.00 36.03 5.36
254 255 2.687935 GTCTCAAGTCAAACTTTGGCCA 59.312 45.455 0.00 0.00 36.03 5.36
255 256 3.130340 GTCTCAAGTCAAACTTTGGCCAA 59.870 43.478 16.05 16.05 36.03 4.52
256 257 3.381272 TCTCAAGTCAAACTTTGGCCAAG 59.619 43.478 19.48 15.02 36.03 3.61
270 271 8.972458 ACTTTGGCCAAGTTTATACAAAAATT 57.028 26.923 19.48 0.00 43.89 1.82
287 288 8.776680 ACAAAAATTATTAACATCCGCGATAC 57.223 30.769 8.23 0.00 0.00 2.24
288 289 7.858879 ACAAAAATTATTAACATCCGCGATACC 59.141 33.333 8.23 0.00 0.00 2.73
289 290 7.499321 AAAATTATTAACATCCGCGATACCA 57.501 32.000 8.23 0.00 0.00 3.25
290 291 7.499321 AAATTATTAACATCCGCGATACCAA 57.501 32.000 8.23 0.00 0.00 3.67
291 292 7.499321 AATTATTAACATCCGCGATACCAAA 57.501 32.000 8.23 0.00 0.00 3.28
292 293 7.681939 ATTATTAACATCCGCGATACCAAAT 57.318 32.000 8.23 3.25 0.00 2.32
293 294 5.607119 ATTAACATCCGCGATACCAAATC 57.393 39.130 8.23 0.00 0.00 2.17
294 295 2.613026 ACATCCGCGATACCAAATCA 57.387 45.000 8.23 0.00 0.00 2.57
295 296 2.912771 ACATCCGCGATACCAAATCAA 58.087 42.857 8.23 0.00 0.00 2.57
296 297 3.476552 ACATCCGCGATACCAAATCAAT 58.523 40.909 8.23 0.00 0.00 2.57
297 298 4.637276 ACATCCGCGATACCAAATCAATA 58.363 39.130 8.23 0.00 0.00 1.90
298 299 4.451096 ACATCCGCGATACCAAATCAATAC 59.549 41.667 8.23 0.00 0.00 1.89
299 300 3.395639 TCCGCGATACCAAATCAATACC 58.604 45.455 8.23 0.00 0.00 2.73
300 301 3.135225 CCGCGATACCAAATCAATACCA 58.865 45.455 8.23 0.00 0.00 3.25
301 302 3.751175 CCGCGATACCAAATCAATACCAT 59.249 43.478 8.23 0.00 0.00 3.55
302 303 4.215399 CCGCGATACCAAATCAATACCATT 59.785 41.667 8.23 0.00 0.00 3.16
303 304 5.410132 CCGCGATACCAAATCAATACCATTA 59.590 40.000 8.23 0.00 0.00 1.90
304 305 6.402118 CCGCGATACCAAATCAATACCATTAG 60.402 42.308 8.23 0.00 0.00 1.73
305 306 6.367695 CGCGATACCAAATCAATACCATTAGA 59.632 38.462 0.00 0.00 0.00 2.10
306 307 7.095397 CGCGATACCAAATCAATACCATTAGAA 60.095 37.037 0.00 0.00 0.00 2.10
307 308 8.730680 GCGATACCAAATCAATACCATTAGAAT 58.269 33.333 0.00 0.00 0.00 2.40
312 313 9.645128 ACCAAATCAATACCATTAGAATCATCA 57.355 29.630 0.00 0.00 0.00 3.07
414 415 7.619964 ATGTGTAGTAAATAAAAACGGAGGG 57.380 36.000 0.00 0.00 0.00 4.30
415 416 6.767456 TGTGTAGTAAATAAAAACGGAGGGA 58.233 36.000 0.00 0.00 0.00 4.20
416 417 6.875195 TGTGTAGTAAATAAAAACGGAGGGAG 59.125 38.462 0.00 0.00 0.00 4.30
417 418 6.875726 GTGTAGTAAATAAAAACGGAGGGAGT 59.124 38.462 0.00 0.00 0.00 3.85
418 419 6.875195 TGTAGTAAATAAAAACGGAGGGAGTG 59.125 38.462 0.00 0.00 0.00 3.51
419 420 6.117975 AGTAAATAAAAACGGAGGGAGTGA 57.882 37.500 0.00 0.00 0.00 3.41
420 421 6.718294 AGTAAATAAAAACGGAGGGAGTGAT 58.282 36.000 0.00 0.00 0.00 3.06
421 422 5.897377 AAATAAAAACGGAGGGAGTGATG 57.103 39.130 0.00 0.00 0.00 3.07
422 423 1.534729 AAAAACGGAGGGAGTGATGC 58.465 50.000 0.00 0.00 0.00 3.91
423 424 0.400213 AAAACGGAGGGAGTGATGCA 59.600 50.000 0.00 0.00 0.00 3.96
424 425 0.620556 AAACGGAGGGAGTGATGCAT 59.379 50.000 0.00 0.00 0.00 3.96
425 426 0.620556 AACGGAGGGAGTGATGCATT 59.379 50.000 0.00 0.00 0.00 3.56
426 427 0.620556 ACGGAGGGAGTGATGCATTT 59.379 50.000 0.00 0.00 0.00 2.32
427 428 1.019673 CGGAGGGAGTGATGCATTTG 58.980 55.000 0.00 0.00 0.00 2.32
428 429 1.407299 CGGAGGGAGTGATGCATTTGA 60.407 52.381 0.00 0.00 0.00 2.69
429 430 2.726821 GGAGGGAGTGATGCATTTGAA 58.273 47.619 0.00 0.00 0.00 2.69
430 431 2.424956 GGAGGGAGTGATGCATTTGAAC 59.575 50.000 0.00 0.00 0.00 3.18
431 432 3.084039 GAGGGAGTGATGCATTTGAACA 58.916 45.455 0.00 0.00 0.00 3.18
432 433 3.087031 AGGGAGTGATGCATTTGAACAG 58.913 45.455 0.00 0.00 0.00 3.16
433 434 3.084039 GGGAGTGATGCATTTGAACAGA 58.916 45.455 0.00 0.00 0.00 3.41
434 435 3.698040 GGGAGTGATGCATTTGAACAGAT 59.302 43.478 0.00 0.00 0.00 2.90
435 436 4.201990 GGGAGTGATGCATTTGAACAGATC 60.202 45.833 0.00 0.00 0.00 2.75
436 437 4.397103 GGAGTGATGCATTTGAACAGATCA 59.603 41.667 0.00 0.00 35.85 2.92
437 438 5.106038 GGAGTGATGCATTTGAACAGATCAA 60.106 40.000 0.00 0.00 46.22 2.57
449 450 7.692460 TTGAACAGATCAAACATATTCTGCT 57.308 32.000 0.00 0.00 44.94 4.24
450 451 8.791327 TTGAACAGATCAAACATATTCTGCTA 57.209 30.769 0.00 0.00 44.94 3.49
451 452 8.791327 TGAACAGATCAAACATATTCTGCTAA 57.209 30.769 0.00 0.00 39.33 3.09
452 453 9.399797 TGAACAGATCAAACATATTCTGCTAAT 57.600 29.630 0.00 0.00 39.33 1.73
479 480 4.981806 ATTACATGAAACCATCGGTTGG 57.018 40.909 0.00 3.54 46.20 3.77
490 491 4.091453 CCATCGGTTGGTTGTCAAATAC 57.909 45.455 0.00 0.00 40.99 1.89
491 492 3.504134 CCATCGGTTGGTTGTCAAATACA 59.496 43.478 0.00 0.00 40.99 2.29
492 493 4.022762 CCATCGGTTGGTTGTCAAATACAA 60.023 41.667 0.00 0.00 40.22 2.41
513 514 7.833285 ACAAGGTTTTCATTACATTACCACT 57.167 32.000 0.00 0.00 0.00 4.00
514 515 8.927675 ACAAGGTTTTCATTACATTACCACTA 57.072 30.769 0.00 0.00 0.00 2.74
515 516 9.528489 ACAAGGTTTTCATTACATTACCACTAT 57.472 29.630 0.00 0.00 0.00 2.12
529 530 9.662947 ACATTACCACTATAGTTAAACAAGGTC 57.337 33.333 11.04 0.00 0.00 3.85
530 531 9.886132 CATTACCACTATAGTTAAACAAGGTCT 57.114 33.333 11.04 0.66 0.00 3.85
532 533 7.549147 ACCACTATAGTTAAACAAGGTCTCA 57.451 36.000 1.56 0.00 0.00 3.27
533 534 7.970102 ACCACTATAGTTAAACAAGGTCTCAA 58.030 34.615 1.56 0.00 0.00 3.02
534 535 8.603304 ACCACTATAGTTAAACAAGGTCTCAAT 58.397 33.333 1.56 0.00 0.00 2.57
535 536 9.099454 CCACTATAGTTAAACAAGGTCTCAATC 57.901 37.037 1.56 0.00 0.00 2.67
536 537 9.653287 CACTATAGTTAAACAAGGTCTCAATCA 57.347 33.333 1.56 0.00 0.00 2.57
537 538 9.877178 ACTATAGTTAAACAAGGTCTCAATCAG 57.123 33.333 0.00 0.00 0.00 2.90
538 539 9.319143 CTATAGTTAAACAAGGTCTCAATCAGG 57.681 37.037 0.00 0.00 0.00 3.86
539 540 6.187727 AGTTAAACAAGGTCTCAATCAGGA 57.812 37.500 0.00 0.00 0.00 3.86
540 541 6.784031 AGTTAAACAAGGTCTCAATCAGGAT 58.216 36.000 0.00 0.00 0.00 3.24
541 542 6.656693 AGTTAAACAAGGTCTCAATCAGGATG 59.343 38.462 0.00 0.00 37.54 3.51
542 543 2.996631 ACAAGGTCTCAATCAGGATGC 58.003 47.619 0.00 0.00 34.76 3.91
543 544 2.306805 ACAAGGTCTCAATCAGGATGCA 59.693 45.455 0.00 0.00 34.76 3.96
544 545 3.245016 ACAAGGTCTCAATCAGGATGCAA 60.245 43.478 0.00 0.00 34.76 4.08
545 546 3.726557 AGGTCTCAATCAGGATGCAAA 57.273 42.857 0.00 0.00 34.76 3.68
546 547 4.246712 AGGTCTCAATCAGGATGCAAAT 57.753 40.909 0.00 0.00 34.76 2.32
547 548 5.378230 AGGTCTCAATCAGGATGCAAATA 57.622 39.130 0.00 0.00 34.76 1.40
548 549 5.128919 AGGTCTCAATCAGGATGCAAATAC 58.871 41.667 0.00 0.00 34.76 1.89
549 550 4.883585 GGTCTCAATCAGGATGCAAATACA 59.116 41.667 0.00 0.00 34.76 2.29
550 551 5.220931 GGTCTCAATCAGGATGCAAATACAC 60.221 44.000 0.00 0.00 34.76 2.90
551 552 5.355071 GTCTCAATCAGGATGCAAATACACA 59.645 40.000 0.00 0.00 34.76 3.72
552 553 5.945191 TCTCAATCAGGATGCAAATACACAA 59.055 36.000 0.00 0.00 34.76 3.33
553 554 6.604396 TCTCAATCAGGATGCAAATACACAAT 59.396 34.615 0.00 0.00 34.76 2.71
554 555 7.123098 TCTCAATCAGGATGCAAATACACAATT 59.877 33.333 0.00 0.00 34.76 2.32
555 556 7.259882 TCAATCAGGATGCAAATACACAATTC 58.740 34.615 0.00 0.00 34.76 2.17
556 557 6.778834 ATCAGGATGCAAATACACAATTCA 57.221 33.333 0.00 0.00 34.76 2.57
557 558 6.587206 TCAGGATGCAAATACACAATTCAA 57.413 33.333 0.00 0.00 34.76 2.69
558 559 6.990798 TCAGGATGCAAATACACAATTCAAA 58.009 32.000 0.00 0.00 34.76 2.69
559 560 6.867816 TCAGGATGCAAATACACAATTCAAAC 59.132 34.615 0.00 0.00 34.76 2.93
560 561 6.869913 CAGGATGCAAATACACAATTCAAACT 59.130 34.615 0.00 0.00 0.00 2.66
561 562 6.869913 AGGATGCAAATACACAATTCAAACTG 59.130 34.615 0.00 0.00 0.00 3.16
562 563 6.646240 GGATGCAAATACACAATTCAAACTGT 59.354 34.615 0.00 0.00 0.00 3.55
563 564 7.171337 GGATGCAAATACACAATTCAAACTGTT 59.829 33.333 0.00 0.00 0.00 3.16
564 565 7.462109 TGCAAATACACAATTCAAACTGTTC 57.538 32.000 0.00 0.00 0.00 3.18
565 566 7.264221 TGCAAATACACAATTCAAACTGTTCT 58.736 30.769 0.00 0.00 0.00 3.01
566 567 7.434897 TGCAAATACACAATTCAAACTGTTCTC 59.565 33.333 0.00 0.00 0.00 2.87
567 568 7.357532 GCAAATACACAATTCAAACTGTTCTCG 60.358 37.037 0.00 0.00 0.00 4.04
568 569 4.552166 ACACAATTCAAACTGTTCTCGG 57.448 40.909 0.00 0.00 0.00 4.63
569 570 3.243068 ACACAATTCAAACTGTTCTCGGC 60.243 43.478 0.00 0.00 0.00 5.54
570 571 3.003689 CACAATTCAAACTGTTCTCGGCT 59.996 43.478 0.00 0.00 0.00 5.52
571 572 4.213270 CACAATTCAAACTGTTCTCGGCTA 59.787 41.667 0.00 0.00 0.00 3.93
572 573 4.819630 ACAATTCAAACTGTTCTCGGCTAA 59.180 37.500 0.00 0.00 0.00 3.09
573 574 5.049405 ACAATTCAAACTGTTCTCGGCTAAG 60.049 40.000 0.00 0.00 0.00 2.18
574 575 2.413837 TCAAACTGTTCTCGGCTAAGC 58.586 47.619 0.00 0.00 0.00 3.09
575 576 2.143122 CAAACTGTTCTCGGCTAAGCA 58.857 47.619 0.00 0.00 0.00 3.91
576 577 2.543777 AACTGTTCTCGGCTAAGCAA 57.456 45.000 0.00 0.00 0.00 3.91
577 578 2.543777 ACTGTTCTCGGCTAAGCAAA 57.456 45.000 0.00 0.00 0.00 3.68
578 579 2.143925 ACTGTTCTCGGCTAAGCAAAC 58.856 47.619 0.00 0.00 0.00 2.93
579 580 2.143122 CTGTTCTCGGCTAAGCAAACA 58.857 47.619 0.00 0.00 0.00 2.83
580 581 2.548057 CTGTTCTCGGCTAAGCAAACAA 59.452 45.455 0.00 0.00 0.00 2.83
581 582 2.946329 TGTTCTCGGCTAAGCAAACAAA 59.054 40.909 0.00 0.00 0.00 2.83
582 583 3.568007 TGTTCTCGGCTAAGCAAACAAAT 59.432 39.130 0.00 0.00 0.00 2.32
583 584 4.757657 TGTTCTCGGCTAAGCAAACAAATA 59.242 37.500 0.00 0.00 0.00 1.40
584 585 4.939509 TCTCGGCTAAGCAAACAAATAC 57.060 40.909 0.00 0.00 0.00 1.89
585 586 4.320023 TCTCGGCTAAGCAAACAAATACA 58.680 39.130 0.00 0.00 0.00 2.29
586 587 4.391830 TCTCGGCTAAGCAAACAAATACAG 59.608 41.667 0.00 0.00 0.00 2.74
587 588 4.320023 TCGGCTAAGCAAACAAATACAGA 58.680 39.130 0.00 0.00 0.00 3.41
588 589 4.941263 TCGGCTAAGCAAACAAATACAGAT 59.059 37.500 0.00 0.00 0.00 2.90
589 590 5.414454 TCGGCTAAGCAAACAAATACAGATT 59.586 36.000 0.00 0.00 0.00 2.40
590 591 6.072175 TCGGCTAAGCAAACAAATACAGATTT 60.072 34.615 0.00 0.00 35.56 2.17
591 592 6.586082 CGGCTAAGCAAACAAATACAGATTTT 59.414 34.615 0.00 0.00 32.73 1.82
592 593 7.753132 CGGCTAAGCAAACAAATACAGATTTTA 59.247 33.333 0.00 0.00 32.73 1.52
593 594 9.076596 GGCTAAGCAAACAAATACAGATTTTAG 57.923 33.333 0.00 0.00 32.73 1.85
594 595 9.076596 GCTAAGCAAACAAATACAGATTTTAGG 57.923 33.333 0.00 0.00 32.73 2.69
597 598 9.643693 AAGCAAACAAATACAGATTTTAGGATG 57.356 29.630 0.00 0.00 32.73 3.51
598 599 8.806146 AGCAAACAAATACAGATTTTAGGATGT 58.194 29.630 0.00 0.00 32.73 3.06
599 600 9.423061 GCAAACAAATACAGATTTTAGGATGTT 57.577 29.630 0.00 0.00 32.73 2.71
2561 2706 3.034924 GTCACATTTGTGGCTCCCA 57.965 52.632 8.01 0.00 46.41 4.37
2742 2887 0.469144 GTCCTGCCCCCTTTGTTTCA 60.469 55.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.543831 ACAGAGGACATTATGGTCATTTTAGC 59.456 38.462 0.00 0.00 39.59 3.09
1 2 8.400947 CAACAGAGGACATTATGGTCATTTTAG 58.599 37.037 0.00 0.00 39.59 1.85
2 3 7.888021 ACAACAGAGGACATTATGGTCATTTTA 59.112 33.333 0.00 0.00 39.59 1.52
3 4 6.721208 ACAACAGAGGACATTATGGTCATTTT 59.279 34.615 0.00 0.00 39.59 1.82
4 5 6.248433 ACAACAGAGGACATTATGGTCATTT 58.752 36.000 0.00 0.00 39.59 2.32
5 6 5.819991 ACAACAGAGGACATTATGGTCATT 58.180 37.500 0.00 0.00 39.59 2.57
6 7 5.441718 ACAACAGAGGACATTATGGTCAT 57.558 39.130 0.00 0.00 39.59 3.06
7 8 4.908601 ACAACAGAGGACATTATGGTCA 57.091 40.909 0.00 0.00 39.59 4.02
8 9 5.352569 CAGAACAACAGAGGACATTATGGTC 59.647 44.000 0.00 0.00 37.06 4.02
9 10 5.221925 ACAGAACAACAGAGGACATTATGGT 60.222 40.000 0.00 0.00 0.00 3.55
10 11 5.248640 ACAGAACAACAGAGGACATTATGG 58.751 41.667 0.00 0.00 0.00 2.74
11 12 7.323420 TCTACAGAACAACAGAGGACATTATG 58.677 38.462 0.00 0.00 0.00 1.90
12 13 7.482169 TCTACAGAACAACAGAGGACATTAT 57.518 36.000 0.00 0.00 0.00 1.28
13 14 6.911250 TCTACAGAACAACAGAGGACATTA 57.089 37.500 0.00 0.00 0.00 1.90
14 15 5.808366 TCTACAGAACAACAGAGGACATT 57.192 39.130 0.00 0.00 0.00 2.71
15 16 6.169094 CAATCTACAGAACAACAGAGGACAT 58.831 40.000 0.00 0.00 0.00 3.06
16 17 5.511373 CCAATCTACAGAACAACAGAGGACA 60.511 44.000 0.00 0.00 0.00 4.02
17 18 4.932200 CCAATCTACAGAACAACAGAGGAC 59.068 45.833 0.00 0.00 0.00 3.85
18 19 4.020218 CCCAATCTACAGAACAACAGAGGA 60.020 45.833 0.00 0.00 0.00 3.71
19 20 4.020218 TCCCAATCTACAGAACAACAGAGG 60.020 45.833 0.00 0.00 0.00 3.69
20 21 5.152623 TCCCAATCTACAGAACAACAGAG 57.847 43.478 0.00 0.00 0.00 3.35
21 22 5.560722 TTCCCAATCTACAGAACAACAGA 57.439 39.130 0.00 0.00 0.00 3.41
22 23 6.540189 CCTATTCCCAATCTACAGAACAACAG 59.460 42.308 0.00 0.00 0.00 3.16
23 24 6.012858 ACCTATTCCCAATCTACAGAACAACA 60.013 38.462 0.00 0.00 0.00 3.33
24 25 6.316390 CACCTATTCCCAATCTACAGAACAAC 59.684 42.308 0.00 0.00 0.00 3.32
25 26 6.414732 CACCTATTCCCAATCTACAGAACAA 58.585 40.000 0.00 0.00 0.00 2.83
26 27 5.629133 GCACCTATTCCCAATCTACAGAACA 60.629 44.000 0.00 0.00 0.00 3.18
27 28 4.816925 GCACCTATTCCCAATCTACAGAAC 59.183 45.833 0.00 0.00 0.00 3.01
28 29 4.721776 AGCACCTATTCCCAATCTACAGAA 59.278 41.667 0.00 0.00 0.00 3.02
29 30 4.101585 CAGCACCTATTCCCAATCTACAGA 59.898 45.833 0.00 0.00 0.00 3.41
30 31 4.101585 TCAGCACCTATTCCCAATCTACAG 59.898 45.833 0.00 0.00 0.00 2.74
31 32 4.037222 TCAGCACCTATTCCCAATCTACA 58.963 43.478 0.00 0.00 0.00 2.74
32 33 4.689612 TCAGCACCTATTCCCAATCTAC 57.310 45.455 0.00 0.00 0.00 2.59
33 34 5.132648 ACAATCAGCACCTATTCCCAATCTA 59.867 40.000 0.00 0.00 0.00 1.98
34 35 4.079558 ACAATCAGCACCTATTCCCAATCT 60.080 41.667 0.00 0.00 0.00 2.40
35 36 4.210331 ACAATCAGCACCTATTCCCAATC 58.790 43.478 0.00 0.00 0.00 2.67
36 37 4.255510 ACAATCAGCACCTATTCCCAAT 57.744 40.909 0.00 0.00 0.00 3.16
37 38 3.737559 ACAATCAGCACCTATTCCCAA 57.262 42.857 0.00 0.00 0.00 4.12
38 39 3.780294 AGTACAATCAGCACCTATTCCCA 59.220 43.478 0.00 0.00 0.00 4.37
39 40 4.130118 CAGTACAATCAGCACCTATTCCC 58.870 47.826 0.00 0.00 0.00 3.97
40 41 4.770795 ACAGTACAATCAGCACCTATTCC 58.229 43.478 0.00 0.00 0.00 3.01
41 42 9.542462 TTATAACAGTACAATCAGCACCTATTC 57.458 33.333 0.00 0.00 0.00 1.75
43 44 9.712305 GATTATAACAGTACAATCAGCACCTAT 57.288 33.333 0.00 0.00 0.00 2.57
44 45 7.865889 CGATTATAACAGTACAATCAGCACCTA 59.134 37.037 0.00 0.00 0.00 3.08
45 46 6.701841 CGATTATAACAGTACAATCAGCACCT 59.298 38.462 0.00 0.00 0.00 4.00
46 47 6.700081 TCGATTATAACAGTACAATCAGCACC 59.300 38.462 0.00 0.00 0.00 5.01
47 48 7.694388 TCGATTATAACAGTACAATCAGCAC 57.306 36.000 0.00 0.00 0.00 4.40
48 49 8.710835 TTTCGATTATAACAGTACAATCAGCA 57.289 30.769 0.00 0.00 0.00 4.41
49 50 9.586150 CATTTCGATTATAACAGTACAATCAGC 57.414 33.333 0.00 0.00 0.00 4.26
55 56 9.863845 TCAAGTCATTTCGATTATAACAGTACA 57.136 29.630 0.00 0.00 0.00 2.90
64 65 9.553064 AGCTCTTAATCAAGTCATTTCGATTAT 57.447 29.630 0.00 0.00 32.10 1.28
65 66 8.948631 AGCTCTTAATCAAGTCATTTCGATTA 57.051 30.769 0.00 0.00 33.20 1.75
66 67 7.768120 AGAGCTCTTAATCAAGTCATTTCGATT 59.232 33.333 11.45 0.00 33.20 3.34
67 68 7.271511 AGAGCTCTTAATCAAGTCATTTCGAT 58.728 34.615 11.45 0.00 33.20 3.59
68 69 6.634805 AGAGCTCTTAATCAAGTCATTTCGA 58.365 36.000 11.45 0.00 33.20 3.71
69 70 6.900568 AGAGCTCTTAATCAAGTCATTTCG 57.099 37.500 11.45 0.00 33.20 3.46
70 71 9.905171 AAAAAGAGCTCTTAATCAAGTCATTTC 57.095 29.630 28.67 0.00 34.61 2.17
71 72 9.688592 CAAAAAGAGCTCTTAATCAAGTCATTT 57.311 29.630 28.67 17.33 34.61 2.32
72 73 8.854117 ACAAAAAGAGCTCTTAATCAAGTCATT 58.146 29.630 28.67 12.52 34.61 2.57
73 74 8.401490 ACAAAAAGAGCTCTTAATCAAGTCAT 57.599 30.769 28.67 6.77 34.61 3.06
74 75 7.307396 CGACAAAAAGAGCTCTTAATCAAGTCA 60.307 37.037 28.67 0.00 34.61 3.41
75 76 7.012358 CGACAAAAAGAGCTCTTAATCAAGTC 58.988 38.462 28.67 24.21 34.61 3.01
76 77 6.566753 GCGACAAAAAGAGCTCTTAATCAAGT 60.567 38.462 28.67 19.57 34.61 3.16
77 78 5.792468 GCGACAAAAAGAGCTCTTAATCAAG 59.208 40.000 28.67 18.78 34.61 3.02
78 79 5.238432 TGCGACAAAAAGAGCTCTTAATCAA 59.762 36.000 28.67 11.79 34.61 2.57
79 80 4.754618 TGCGACAAAAAGAGCTCTTAATCA 59.245 37.500 28.67 15.84 34.61 2.57
80 81 5.120830 TCTGCGACAAAAAGAGCTCTTAATC 59.879 40.000 28.67 20.22 34.61 1.75
81 82 4.997395 TCTGCGACAAAAAGAGCTCTTAAT 59.003 37.500 28.67 17.83 34.61 1.40
82 83 4.377021 TCTGCGACAAAAAGAGCTCTTAA 58.623 39.130 28.67 7.04 34.61 1.85
83 84 3.990092 TCTGCGACAAAAAGAGCTCTTA 58.010 40.909 28.67 10.06 34.61 2.10
84 85 2.838736 TCTGCGACAAAAAGAGCTCTT 58.161 42.857 23.49 23.49 37.91 2.85
85 86 2.533266 TCTGCGACAAAAAGAGCTCT 57.467 45.000 11.45 11.45 0.00 4.09
86 87 3.058639 ACAATCTGCGACAAAAAGAGCTC 60.059 43.478 5.27 5.27 0.00 4.09
87 88 2.880890 ACAATCTGCGACAAAAAGAGCT 59.119 40.909 0.00 0.00 0.00 4.09
88 89 3.229552 GACAATCTGCGACAAAAAGAGC 58.770 45.455 0.00 0.00 0.00 4.09
89 90 3.473367 CGACAATCTGCGACAAAAAGAG 58.527 45.455 0.00 0.00 0.00 2.85
90 91 2.223144 CCGACAATCTGCGACAAAAAGA 59.777 45.455 0.00 0.00 0.00 2.52
91 92 2.032030 ACCGACAATCTGCGACAAAAAG 60.032 45.455 0.00 0.00 0.00 2.27
92 93 1.944024 ACCGACAATCTGCGACAAAAA 59.056 42.857 0.00 0.00 0.00 1.94
93 94 1.588674 ACCGACAATCTGCGACAAAA 58.411 45.000 0.00 0.00 0.00 2.44
94 95 1.588674 AACCGACAATCTGCGACAAA 58.411 45.000 0.00 0.00 0.00 2.83
95 96 1.588674 AAACCGACAATCTGCGACAA 58.411 45.000 0.00 0.00 0.00 3.18
96 97 1.529438 GAAAACCGACAATCTGCGACA 59.471 47.619 0.00 0.00 0.00 4.35
97 98 1.529438 TGAAAACCGACAATCTGCGAC 59.471 47.619 0.00 0.00 0.00 5.19
98 99 1.872388 TGAAAACCGACAATCTGCGA 58.128 45.000 0.00 0.00 0.00 5.10
99 100 2.508867 CATGAAAACCGACAATCTGCG 58.491 47.619 0.00 0.00 0.00 5.18
100 101 2.228822 ACCATGAAAACCGACAATCTGC 59.771 45.455 0.00 0.00 0.00 4.26
101 102 4.503741 AACCATGAAAACCGACAATCTG 57.496 40.909 0.00 0.00 0.00 2.90
102 103 5.529581 AAAACCATGAAAACCGACAATCT 57.470 34.783 0.00 0.00 0.00 2.40
103 104 7.436970 AGTTAAAAACCATGAAAACCGACAATC 59.563 33.333 0.00 0.00 0.00 2.67
104 105 7.223777 CAGTTAAAAACCATGAAAACCGACAAT 59.776 33.333 0.00 0.00 0.00 2.71
105 106 6.531948 CAGTTAAAAACCATGAAAACCGACAA 59.468 34.615 0.00 0.00 0.00 3.18
106 107 6.037098 CAGTTAAAAACCATGAAAACCGACA 58.963 36.000 0.00 0.00 0.00 4.35
107 108 6.267070 TCAGTTAAAAACCATGAAAACCGAC 58.733 36.000 0.00 0.00 0.00 4.79
108 109 6.452494 TCAGTTAAAAACCATGAAAACCGA 57.548 33.333 0.00 0.00 0.00 4.69
109 110 7.527084 TTTCAGTTAAAAACCATGAAAACCG 57.473 32.000 0.00 0.00 34.58 4.44
126 127 9.814899 TGACATCAAACAATTGTAATTTCAGTT 57.185 25.926 12.39 0.00 37.79 3.16
127 128 9.985730 ATGACATCAAACAATTGTAATTTCAGT 57.014 25.926 12.39 5.23 37.79 3.41
134 135 9.283768 ACTGTCTATGACATCAAACAATTGTAA 57.716 29.630 12.39 0.94 41.94 2.41
135 136 8.720562 CACTGTCTATGACATCAAACAATTGTA 58.279 33.333 12.39 0.00 41.94 2.41
136 137 7.229306 ACACTGTCTATGACATCAAACAATTGT 59.771 33.333 4.92 4.92 41.94 2.71
137 138 7.587629 ACACTGTCTATGACATCAAACAATTG 58.412 34.615 3.24 3.24 41.94 2.32
138 139 7.750229 ACACTGTCTATGACATCAAACAATT 57.250 32.000 0.65 0.00 41.94 2.32
139 140 9.453572 AATACACTGTCTATGACATCAAACAAT 57.546 29.630 0.65 0.00 41.94 2.71
140 141 8.846943 AATACACTGTCTATGACATCAAACAA 57.153 30.769 0.65 0.00 41.94 2.83
141 142 8.846943 AAATACACTGTCTATGACATCAAACA 57.153 30.769 0.65 0.00 41.94 2.83
154 155 8.584157 TGCCAAAATCATTTAAATACACTGTCT 58.416 29.630 0.00 0.00 0.00 3.41
155 156 8.755696 TGCCAAAATCATTTAAATACACTGTC 57.244 30.769 0.00 0.00 0.00 3.51
163 164 8.983702 AGCCAATATGCCAAAATCATTTAAAT 57.016 26.923 0.00 0.00 0.00 1.40
167 168 9.661563 CATATAGCCAATATGCCAAAATCATTT 57.338 29.630 4.27 0.00 40.72 2.32
168 169 9.038072 TCATATAGCCAATATGCCAAAATCATT 57.962 29.630 10.46 0.00 44.91 2.57
169 170 8.598202 TCATATAGCCAATATGCCAAAATCAT 57.402 30.769 10.46 0.00 44.91 2.45
170 171 8.598202 ATCATATAGCCAATATGCCAAAATCA 57.402 30.769 10.46 0.00 44.91 2.57
171 172 9.956720 GTATCATATAGCCAATATGCCAAAATC 57.043 33.333 10.46 0.00 44.91 2.17
172 173 9.705103 AGTATCATATAGCCAATATGCCAAAAT 57.295 29.630 10.46 3.71 44.91 1.82
173 174 9.177608 GAGTATCATATAGCCAATATGCCAAAA 57.822 33.333 10.46 0.00 44.91 2.44
174 175 7.775093 GGAGTATCATATAGCCAATATGCCAAA 59.225 37.037 10.46 0.00 44.91 3.28
175 176 7.282585 GGAGTATCATATAGCCAATATGCCAA 58.717 38.462 10.46 0.00 44.91 4.52
176 177 6.183361 GGGAGTATCATATAGCCAATATGCCA 60.183 42.308 10.46 1.04 44.91 4.92
177 178 6.043706 AGGGAGTATCATATAGCCAATATGCC 59.956 42.308 10.46 6.70 44.91 4.40
178 179 7.072263 AGGGAGTATCATATAGCCAATATGC 57.928 40.000 10.46 0.51 44.91 3.14
179 180 7.524532 CGGAGGGAGTATCATATAGCCAATATG 60.525 44.444 9.42 9.42 46.12 1.78
180 181 6.495181 CGGAGGGAGTATCATATAGCCAATAT 59.505 42.308 0.00 0.00 36.25 1.28
181 182 5.833667 CGGAGGGAGTATCATATAGCCAATA 59.166 44.000 0.00 0.00 36.25 1.90
182 183 4.651503 CGGAGGGAGTATCATATAGCCAAT 59.348 45.833 0.00 0.00 36.25 3.16
183 184 4.023980 CGGAGGGAGTATCATATAGCCAA 58.976 47.826 0.00 0.00 36.25 4.52
184 185 3.011369 ACGGAGGGAGTATCATATAGCCA 59.989 47.826 0.00 0.00 36.25 4.75
185 186 3.633418 ACGGAGGGAGTATCATATAGCC 58.367 50.000 0.00 0.00 36.25 3.93
186 187 5.662674 AAACGGAGGGAGTATCATATAGC 57.337 43.478 0.00 0.00 36.25 2.97
190 191 9.768662 GTAAATAAAAACGGAGGGAGTATCATA 57.231 33.333 0.00 0.00 36.25 2.15
191 192 8.491958 AGTAAATAAAAACGGAGGGAGTATCAT 58.508 33.333 0.00 0.00 36.25 2.45
192 193 7.854337 AGTAAATAAAAACGGAGGGAGTATCA 58.146 34.615 0.00 0.00 36.25 2.15
193 194 8.202811 AGAGTAAATAAAAACGGAGGGAGTATC 58.797 37.037 0.00 0.00 0.00 2.24
194 195 7.985752 CAGAGTAAATAAAAACGGAGGGAGTAT 59.014 37.037 0.00 0.00 0.00 2.12
195 196 7.325694 CAGAGTAAATAAAAACGGAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
196 197 6.171213 CAGAGTAAATAAAAACGGAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
197 198 5.064834 GCAGAGTAAATAAAAACGGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
198 199 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
199 200 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
200 201 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
211 212 9.250624 GAGACGAAACTAATATGCAGAGTAAAT 57.749 33.333 0.00 0.00 0.00 1.40
212 213 8.248253 TGAGACGAAACTAATATGCAGAGTAAA 58.752 33.333 0.00 0.00 0.00 2.01
213 214 7.768240 TGAGACGAAACTAATATGCAGAGTAA 58.232 34.615 0.00 0.00 0.00 2.24
214 215 7.329588 TGAGACGAAACTAATATGCAGAGTA 57.670 36.000 0.00 0.00 0.00 2.59
215 216 6.208988 TGAGACGAAACTAATATGCAGAGT 57.791 37.500 0.00 0.00 0.00 3.24
216 217 6.754209 ACTTGAGACGAAACTAATATGCAGAG 59.246 38.462 0.00 0.00 0.00 3.35
217 218 6.631016 ACTTGAGACGAAACTAATATGCAGA 58.369 36.000 0.00 0.00 0.00 4.26
218 219 6.531594 TGACTTGAGACGAAACTAATATGCAG 59.468 38.462 0.00 0.00 0.00 4.41
219 220 6.394809 TGACTTGAGACGAAACTAATATGCA 58.605 36.000 0.00 0.00 0.00 3.96
220 221 6.887376 TGACTTGAGACGAAACTAATATGC 57.113 37.500 0.00 0.00 0.00 3.14
221 222 8.926710 AGTTTGACTTGAGACGAAACTAATATG 58.073 33.333 0.00 0.00 35.59 1.78
222 223 9.490379 AAGTTTGACTTGAGACGAAACTAATAT 57.510 29.630 0.00 0.00 37.00 1.28
223 224 8.882415 AAGTTTGACTTGAGACGAAACTAATA 57.118 30.769 0.00 0.00 37.00 0.98
224 225 7.787725 AAGTTTGACTTGAGACGAAACTAAT 57.212 32.000 0.00 0.00 37.00 1.73
225 226 7.413657 CCAAAGTTTGACTTGAGACGAAACTAA 60.414 37.037 17.33 0.00 38.66 2.24
226 227 6.036735 CCAAAGTTTGACTTGAGACGAAACTA 59.963 38.462 17.33 0.00 38.66 2.24
227 228 5.163754 CCAAAGTTTGACTTGAGACGAAACT 60.164 40.000 17.33 0.00 38.66 2.66
228 229 5.028375 CCAAAGTTTGACTTGAGACGAAAC 58.972 41.667 17.33 0.00 38.66 2.78
229 230 4.438200 GCCAAAGTTTGACTTGAGACGAAA 60.438 41.667 17.33 0.00 38.66 3.46
230 231 3.064820 GCCAAAGTTTGACTTGAGACGAA 59.935 43.478 17.33 0.00 38.66 3.85
231 232 2.612212 GCCAAAGTTTGACTTGAGACGA 59.388 45.455 17.33 0.00 38.66 4.20
232 233 2.287009 GGCCAAAGTTTGACTTGAGACG 60.287 50.000 17.33 0.00 38.66 4.18
233 234 2.687935 TGGCCAAAGTTTGACTTGAGAC 59.312 45.455 17.33 1.77 38.66 3.36
234 235 3.011566 TGGCCAAAGTTTGACTTGAGA 57.988 42.857 17.33 0.00 38.66 3.27
235 236 3.709987 CTTGGCCAAAGTTTGACTTGAG 58.290 45.455 20.91 0.00 38.66 3.02
236 237 3.799281 CTTGGCCAAAGTTTGACTTGA 57.201 42.857 20.91 0.00 38.66 3.02
261 262 9.866936 GTATCGCGGATGTTAATAATTTTTGTA 57.133 29.630 6.13 0.00 0.00 2.41
262 263 7.858879 GGTATCGCGGATGTTAATAATTTTTGT 59.141 33.333 6.13 0.00 0.00 2.83
263 264 7.858382 TGGTATCGCGGATGTTAATAATTTTTG 59.142 33.333 6.13 0.00 0.00 2.44
264 265 7.932335 TGGTATCGCGGATGTTAATAATTTTT 58.068 30.769 6.13 0.00 0.00 1.94
265 266 7.499321 TGGTATCGCGGATGTTAATAATTTT 57.501 32.000 6.13 0.00 0.00 1.82
266 267 7.499321 TTGGTATCGCGGATGTTAATAATTT 57.501 32.000 6.13 0.00 0.00 1.82
267 268 7.499321 TTTGGTATCGCGGATGTTAATAATT 57.501 32.000 6.13 0.00 0.00 1.40
268 269 7.389330 TGATTTGGTATCGCGGATGTTAATAAT 59.611 33.333 6.13 0.00 0.00 1.28
269 270 6.706716 TGATTTGGTATCGCGGATGTTAATAA 59.293 34.615 6.13 0.00 0.00 1.40
270 271 6.224584 TGATTTGGTATCGCGGATGTTAATA 58.775 36.000 6.13 0.00 0.00 0.98
271 272 5.060506 TGATTTGGTATCGCGGATGTTAAT 58.939 37.500 6.13 0.00 0.00 1.40
272 273 4.443621 TGATTTGGTATCGCGGATGTTAA 58.556 39.130 6.13 0.00 0.00 2.01
273 274 4.061357 TGATTTGGTATCGCGGATGTTA 57.939 40.909 6.13 0.00 0.00 2.41
274 275 2.912771 TGATTTGGTATCGCGGATGTT 58.087 42.857 6.13 0.00 0.00 2.71
275 276 2.613026 TGATTTGGTATCGCGGATGT 57.387 45.000 6.13 0.00 0.00 3.06
276 277 4.142902 GGTATTGATTTGGTATCGCGGATG 60.143 45.833 6.13 0.00 0.00 3.51
277 278 4.000988 GGTATTGATTTGGTATCGCGGAT 58.999 43.478 6.13 0.75 0.00 4.18
278 279 3.181464 TGGTATTGATTTGGTATCGCGGA 60.181 43.478 6.13 0.00 0.00 5.54
279 280 3.135225 TGGTATTGATTTGGTATCGCGG 58.865 45.455 6.13 0.00 0.00 6.46
280 281 5.356882 AATGGTATTGATTTGGTATCGCG 57.643 39.130 0.00 0.00 0.00 5.87
281 282 7.667043 TCTAATGGTATTGATTTGGTATCGC 57.333 36.000 0.00 0.00 0.00 4.58
286 287 9.645128 TGATGATTCTAATGGTATTGATTTGGT 57.355 29.630 0.00 0.00 0.00 3.67
388 389 9.333724 CCCTCCGTTTTTATTTACTACACATAT 57.666 33.333 0.00 0.00 0.00 1.78
389 390 8.538701 TCCCTCCGTTTTTATTTACTACACATA 58.461 33.333 0.00 0.00 0.00 2.29
390 391 7.396418 TCCCTCCGTTTTTATTTACTACACAT 58.604 34.615 0.00 0.00 0.00 3.21
391 392 6.767456 TCCCTCCGTTTTTATTTACTACACA 58.233 36.000 0.00 0.00 0.00 3.72
392 393 6.875726 ACTCCCTCCGTTTTTATTTACTACAC 59.124 38.462 0.00 0.00 0.00 2.90
393 394 6.875195 CACTCCCTCCGTTTTTATTTACTACA 59.125 38.462 0.00 0.00 0.00 2.74
394 395 7.099120 TCACTCCCTCCGTTTTTATTTACTAC 58.901 38.462 0.00 0.00 0.00 2.73
395 396 7.243604 TCACTCCCTCCGTTTTTATTTACTA 57.756 36.000 0.00 0.00 0.00 1.82
396 397 6.117975 TCACTCCCTCCGTTTTTATTTACT 57.882 37.500 0.00 0.00 0.00 2.24
397 398 6.677187 GCATCACTCCCTCCGTTTTTATTTAC 60.677 42.308 0.00 0.00 0.00 2.01
398 399 5.355910 GCATCACTCCCTCCGTTTTTATTTA 59.644 40.000 0.00 0.00 0.00 1.40
399 400 4.157840 GCATCACTCCCTCCGTTTTTATTT 59.842 41.667 0.00 0.00 0.00 1.40
400 401 3.694566 GCATCACTCCCTCCGTTTTTATT 59.305 43.478 0.00 0.00 0.00 1.40
401 402 3.279434 GCATCACTCCCTCCGTTTTTAT 58.721 45.455 0.00 0.00 0.00 1.40
402 403 2.039216 TGCATCACTCCCTCCGTTTTTA 59.961 45.455 0.00 0.00 0.00 1.52
403 404 1.202879 TGCATCACTCCCTCCGTTTTT 60.203 47.619 0.00 0.00 0.00 1.94
404 405 0.400213 TGCATCACTCCCTCCGTTTT 59.600 50.000 0.00 0.00 0.00 2.43
405 406 0.620556 ATGCATCACTCCCTCCGTTT 59.379 50.000 0.00 0.00 0.00 3.60
406 407 0.620556 AATGCATCACTCCCTCCGTT 59.379 50.000 0.00 0.00 0.00 4.44
407 408 0.620556 AAATGCATCACTCCCTCCGT 59.379 50.000 0.00 0.00 0.00 4.69
408 409 1.019673 CAAATGCATCACTCCCTCCG 58.980 55.000 0.00 0.00 0.00 4.63
409 410 2.424956 GTTCAAATGCATCACTCCCTCC 59.575 50.000 0.00 0.00 0.00 4.30
410 411 3.084039 TGTTCAAATGCATCACTCCCTC 58.916 45.455 0.00 0.00 0.00 4.30
411 412 3.087031 CTGTTCAAATGCATCACTCCCT 58.913 45.455 0.00 0.00 0.00 4.20
412 413 3.084039 TCTGTTCAAATGCATCACTCCC 58.916 45.455 0.00 0.00 0.00 4.30
413 414 4.397103 TGATCTGTTCAAATGCATCACTCC 59.603 41.667 0.00 0.00 0.00 3.85
414 415 5.556355 TGATCTGTTCAAATGCATCACTC 57.444 39.130 0.00 0.00 0.00 3.51
415 416 5.970317 TTGATCTGTTCAAATGCATCACT 57.030 34.783 0.00 0.00 41.38 3.41
425 426 7.692460 AGCAGAATATGTTTGATCTGTTCAA 57.308 32.000 0.00 0.00 42.62 2.69
426 427 8.791327 TTAGCAGAATATGTTTGATCTGTTCA 57.209 30.769 0.00 0.00 41.03 3.18
453 454 9.443323 CCAACCGATGGTTTCATGTAATATATA 57.557 33.333 0.00 0.00 44.33 0.86
454 455 8.335532 CCAACCGATGGTTTCATGTAATATAT 57.664 34.615 0.00 0.00 44.33 0.86
455 456 7.737972 CCAACCGATGGTTTCATGTAATATA 57.262 36.000 0.00 0.00 44.33 0.86
456 457 6.633500 CCAACCGATGGTTTCATGTAATAT 57.367 37.500 0.00 0.00 44.33 1.28
458 459 4.981806 CCAACCGATGGTTTCATGTAAT 57.018 40.909 0.00 0.00 44.33 1.89
469 470 3.504134 TGTATTTGACAACCAACCGATGG 59.496 43.478 5.75 5.75 43.95 3.51
470 471 4.757799 TGTATTTGACAACCAACCGATG 57.242 40.909 0.00 0.00 34.15 3.84
471 472 4.217550 CCTTGTATTTGACAACCAACCGAT 59.782 41.667 0.00 0.00 43.30 4.18
472 473 3.566322 CCTTGTATTTGACAACCAACCGA 59.434 43.478 0.00 0.00 43.30 4.69
473 474 3.316868 ACCTTGTATTTGACAACCAACCG 59.683 43.478 0.00 0.00 43.30 4.44
474 475 4.929819 ACCTTGTATTTGACAACCAACC 57.070 40.909 0.00 0.00 43.30 3.77
475 476 6.814146 TGAAAACCTTGTATTTGACAACCAAC 59.186 34.615 0.00 0.00 43.30 3.77
476 477 6.936279 TGAAAACCTTGTATTTGACAACCAA 58.064 32.000 0.00 0.00 43.30 3.67
477 478 6.531503 TGAAAACCTTGTATTTGACAACCA 57.468 33.333 0.00 0.00 43.30 3.67
478 479 8.974408 GTAATGAAAACCTTGTATTTGACAACC 58.026 33.333 0.00 0.00 43.30 3.77
479 480 9.522804 TGTAATGAAAACCTTGTATTTGACAAC 57.477 29.630 0.00 0.00 43.30 3.32
487 488 9.528489 AGTGGTAATGTAATGAAAACCTTGTAT 57.472 29.630 0.00 0.00 0.00 2.29
488 489 8.927675 AGTGGTAATGTAATGAAAACCTTGTA 57.072 30.769 0.00 0.00 0.00 2.41
489 490 7.833285 AGTGGTAATGTAATGAAAACCTTGT 57.167 32.000 0.00 0.00 0.00 3.16
503 504 9.662947 GACCTTGTTTAACTATAGTGGTAATGT 57.337 33.333 6.06 2.07 0.00 2.71
504 505 9.886132 AGACCTTGTTTAACTATAGTGGTAATG 57.114 33.333 6.06 0.00 0.00 1.90
506 507 9.092338 TGAGACCTTGTTTAACTATAGTGGTAA 57.908 33.333 6.06 0.00 0.00 2.85
507 508 8.654485 TGAGACCTTGTTTAACTATAGTGGTA 57.346 34.615 6.06 0.00 0.00 3.25
508 509 7.549147 TGAGACCTTGTTTAACTATAGTGGT 57.451 36.000 6.06 7.32 0.00 4.16
509 510 9.099454 GATTGAGACCTTGTTTAACTATAGTGG 57.901 37.037 6.06 3.91 0.00 4.00
510 511 9.653287 TGATTGAGACCTTGTTTAACTATAGTG 57.347 33.333 6.06 0.00 0.00 2.74
511 512 9.877178 CTGATTGAGACCTTGTTTAACTATAGT 57.123 33.333 0.00 0.00 0.00 2.12
512 513 9.319143 CCTGATTGAGACCTTGTTTAACTATAG 57.681 37.037 0.00 0.00 0.00 1.31
513 514 9.042450 TCCTGATTGAGACCTTGTTTAACTATA 57.958 33.333 0.00 0.00 0.00 1.31
514 515 7.918076 TCCTGATTGAGACCTTGTTTAACTAT 58.082 34.615 0.00 0.00 0.00 2.12
515 516 7.311092 TCCTGATTGAGACCTTGTTTAACTA 57.689 36.000 0.00 0.00 0.00 2.24
516 517 6.187727 TCCTGATTGAGACCTTGTTTAACT 57.812 37.500 0.00 0.00 0.00 2.24
517 518 6.623767 GCATCCTGATTGAGACCTTGTTTAAC 60.624 42.308 0.00 0.00 0.00 2.01
518 519 5.415701 GCATCCTGATTGAGACCTTGTTTAA 59.584 40.000 0.00 0.00 0.00 1.52
519 520 4.943705 GCATCCTGATTGAGACCTTGTTTA 59.056 41.667 0.00 0.00 0.00 2.01
520 521 3.760684 GCATCCTGATTGAGACCTTGTTT 59.239 43.478 0.00 0.00 0.00 2.83
521 522 3.245016 TGCATCCTGATTGAGACCTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
522 523 2.306805 TGCATCCTGATTGAGACCTTGT 59.693 45.455 0.00 0.00 0.00 3.16
523 524 2.995283 TGCATCCTGATTGAGACCTTG 58.005 47.619 0.00 0.00 0.00 3.61
524 525 3.726557 TTGCATCCTGATTGAGACCTT 57.273 42.857 0.00 0.00 0.00 3.50
525 526 3.726557 TTTGCATCCTGATTGAGACCT 57.273 42.857 0.00 0.00 0.00 3.85
526 527 4.883585 TGTATTTGCATCCTGATTGAGACC 59.116 41.667 0.00 0.00 0.00 3.85
527 528 5.355071 TGTGTATTTGCATCCTGATTGAGAC 59.645 40.000 0.00 0.00 0.00 3.36
528 529 5.499313 TGTGTATTTGCATCCTGATTGAGA 58.501 37.500 0.00 0.00 0.00 3.27
529 530 5.823209 TGTGTATTTGCATCCTGATTGAG 57.177 39.130 0.00 0.00 0.00 3.02
530 531 6.778834 ATTGTGTATTTGCATCCTGATTGA 57.221 33.333 0.00 0.00 0.00 2.57
531 532 7.036829 TGAATTGTGTATTTGCATCCTGATTG 58.963 34.615 0.00 0.00 0.00 2.67
532 533 7.172868 TGAATTGTGTATTTGCATCCTGATT 57.827 32.000 0.00 0.00 0.00 2.57
533 534 6.778834 TGAATTGTGTATTTGCATCCTGAT 57.221 33.333 0.00 0.00 0.00 2.90
534 535 6.587206 TTGAATTGTGTATTTGCATCCTGA 57.413 33.333 0.00 0.00 0.00 3.86
535 536 6.869913 AGTTTGAATTGTGTATTTGCATCCTG 59.130 34.615 0.00 0.00 0.00 3.86
536 537 6.869913 CAGTTTGAATTGTGTATTTGCATCCT 59.130 34.615 0.00 0.00 0.00 3.24
537 538 6.646240 ACAGTTTGAATTGTGTATTTGCATCC 59.354 34.615 0.00 0.00 0.00 3.51
538 539 7.642071 ACAGTTTGAATTGTGTATTTGCATC 57.358 32.000 0.00 0.00 0.00 3.91
539 540 7.927629 AGAACAGTTTGAATTGTGTATTTGCAT 59.072 29.630 0.00 0.00 0.00 3.96
540 541 7.264221 AGAACAGTTTGAATTGTGTATTTGCA 58.736 30.769 0.00 0.00 0.00 4.08
541 542 7.357532 CGAGAACAGTTTGAATTGTGTATTTGC 60.358 37.037 0.00 0.00 0.00 3.68
542 543 7.113404 CCGAGAACAGTTTGAATTGTGTATTTG 59.887 37.037 0.00 0.00 0.00 2.32
543 544 7.138736 CCGAGAACAGTTTGAATTGTGTATTT 58.861 34.615 0.00 0.00 0.00 1.40
544 545 6.668323 CCGAGAACAGTTTGAATTGTGTATT 58.332 36.000 0.00 0.00 0.00 1.89
545 546 5.334879 GCCGAGAACAGTTTGAATTGTGTAT 60.335 40.000 0.00 0.00 0.00 2.29
546 547 4.024387 GCCGAGAACAGTTTGAATTGTGTA 60.024 41.667 0.00 0.00 0.00 2.90
547 548 3.243068 GCCGAGAACAGTTTGAATTGTGT 60.243 43.478 0.00 0.00 0.00 3.72
548 549 3.003689 AGCCGAGAACAGTTTGAATTGTG 59.996 43.478 0.00 0.00 0.00 3.33
549 550 3.214328 AGCCGAGAACAGTTTGAATTGT 58.786 40.909 0.00 0.00 0.00 2.71
550 551 3.904136 AGCCGAGAACAGTTTGAATTG 57.096 42.857 0.00 0.00 0.00 2.32
551 552 4.083271 GCTTAGCCGAGAACAGTTTGAATT 60.083 41.667 0.00 0.00 0.00 2.17
552 553 3.437049 GCTTAGCCGAGAACAGTTTGAAT 59.563 43.478 0.00 0.00 0.00 2.57
553 554 2.806244 GCTTAGCCGAGAACAGTTTGAA 59.194 45.455 0.00 0.00 0.00 2.69
554 555 2.224185 TGCTTAGCCGAGAACAGTTTGA 60.224 45.455 0.29 0.00 0.00 2.69
555 556 2.143122 TGCTTAGCCGAGAACAGTTTG 58.857 47.619 0.29 0.00 0.00 2.93
556 557 2.543777 TGCTTAGCCGAGAACAGTTT 57.456 45.000 0.29 0.00 0.00 2.66
557 558 2.543777 TTGCTTAGCCGAGAACAGTT 57.456 45.000 0.29 0.00 0.00 3.16
558 559 2.143925 GTTTGCTTAGCCGAGAACAGT 58.856 47.619 0.29 0.00 0.00 3.55
559 560 2.143122 TGTTTGCTTAGCCGAGAACAG 58.857 47.619 0.29 0.00 0.00 3.16
560 561 2.248280 TGTTTGCTTAGCCGAGAACA 57.752 45.000 0.29 5.23 0.00 3.18
561 562 3.619233 TTTGTTTGCTTAGCCGAGAAC 57.381 42.857 0.29 2.64 0.00 3.01
562 563 4.757657 TGTATTTGTTTGCTTAGCCGAGAA 59.242 37.500 0.29 0.00 0.00 2.87
563 564 4.320023 TGTATTTGTTTGCTTAGCCGAGA 58.680 39.130 0.29 0.00 0.00 4.04
564 565 4.391830 TCTGTATTTGTTTGCTTAGCCGAG 59.608 41.667 0.29 0.00 0.00 4.63
565 566 4.320023 TCTGTATTTGTTTGCTTAGCCGA 58.680 39.130 0.29 0.00 0.00 5.54
566 567 4.678509 TCTGTATTTGTTTGCTTAGCCG 57.321 40.909 0.29 0.00 0.00 5.52
567 568 7.889589 AAAATCTGTATTTGTTTGCTTAGCC 57.110 32.000 0.29 0.00 35.46 3.93
568 569 9.076596 CCTAAAATCTGTATTTGTTTGCTTAGC 57.923 33.333 0.00 0.00 35.46 3.09
571 572 9.643693 CATCCTAAAATCTGTATTTGTTTGCTT 57.356 29.630 0.00 0.00 35.46 3.91
572 573 8.806146 ACATCCTAAAATCTGTATTTGTTTGCT 58.194 29.630 0.00 0.00 35.46 3.91
573 574 8.986477 ACATCCTAAAATCTGTATTTGTTTGC 57.014 30.769 0.00 0.00 35.46 3.68
583 584 9.739276 TTCTAACATGAACATCCTAAAATCTGT 57.261 29.630 0.00 0.00 0.00 3.41
584 585 9.994432 GTTCTAACATGAACATCCTAAAATCTG 57.006 33.333 0.00 0.00 44.00 2.90
597 598 4.556699 GCACAACCCTGTTCTAACATGAAC 60.557 45.833 0.00 0.00 44.60 3.18
598 599 3.568007 GCACAACCCTGTTCTAACATGAA 59.432 43.478 0.00 0.00 38.41 2.57
599 600 3.146066 GCACAACCCTGTTCTAACATGA 58.854 45.455 0.00 0.00 38.41 3.07
600 601 3.058016 CAGCACAACCCTGTTCTAACATG 60.058 47.826 0.00 0.00 38.41 3.21
601 602 3.149196 CAGCACAACCCTGTTCTAACAT 58.851 45.455 0.00 0.00 38.41 2.71
1916 2061 0.673956 GCCTCCCGAGTCCTTTTGAC 60.674 60.000 0.00 0.00 44.82 3.18
2561 2706 5.368989 CACTCCTAACCAAAGAAGACAAGT 58.631 41.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.