Multiple sequence alignment - TraesCS1A01G146100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G146100 | chr1A | 100.000 | 2369 | 0 | 0 | 1 | 2369 | 252494576 | 252496944 | 0.000000e+00 | 4375 |
1 | TraesCS1A01G146100 | chr1A | 98.351 | 1031 | 15 | 2 | 995 | 2023 | 252515213 | 252516243 | 0.000000e+00 | 1808 |
2 | TraesCS1A01G146100 | chr1A | 96.507 | 1002 | 20 | 6 | 1 | 995 | 252487606 | 252488599 | 0.000000e+00 | 1642 |
3 | TraesCS1A01G146100 | chr1A | 96.185 | 996 | 31 | 4 | 1 | 995 | 254050419 | 254049430 | 0.000000e+00 | 1622 |
4 | TraesCS1A01G146100 | chr1A | 96.004 | 1001 | 32 | 5 | 1 | 995 | 241115149 | 241116147 | 0.000000e+00 | 1620 |
5 | TraesCS1A01G146100 | chr1A | 96.084 | 996 | 30 | 5 | 1 | 995 | 249848146 | 249849133 | 0.000000e+00 | 1615 |
6 | TraesCS1A01G146100 | chr1A | 95.984 | 996 | 34 | 3 | 1 | 995 | 251545689 | 251544699 | 0.000000e+00 | 1613 |
7 | TraesCS1A01G146100 | chr1A | 99.138 | 348 | 2 | 1 | 2023 | 2369 | 476607334 | 476606987 | 2.000000e-175 | 625 |
8 | TraesCS1A01G146100 | chr1A | 99.133 | 346 | 3 | 0 | 2024 | 2369 | 141996952 | 141997297 | 7.190000e-175 | 623 |
9 | TraesCS1A01G146100 | chr1A | 98.305 | 354 | 4 | 2 | 2018 | 2369 | 234696119 | 234696472 | 9.300000e-174 | 619 |
10 | TraesCS1A01G146100 | chr3A | 98.545 | 1031 | 13 | 2 | 995 | 2023 | 217719383 | 217718353 | 0.000000e+00 | 1820 |
11 | TraesCS1A01G146100 | chr3A | 95.691 | 998 | 36 | 7 | 1 | 995 | 637416078 | 637415085 | 0.000000e+00 | 1598 |
12 | TraesCS1A01G146100 | chr3A | 95.582 | 996 | 38 | 6 | 1 | 995 | 593192979 | 593193969 | 0.000000e+00 | 1591 |
13 | TraesCS1A01G146100 | chr4A | 98.448 | 1031 | 14 | 2 | 995 | 2023 | 357684054 | 357685084 | 0.000000e+00 | 1814 |
14 | TraesCS1A01G146100 | chr4A | 98.351 | 1031 | 15 | 2 | 995 | 2023 | 495111154 | 495112184 | 0.000000e+00 | 1808 |
15 | TraesCS1A01G146100 | chr2A | 98.448 | 1031 | 14 | 2 | 995 | 2023 | 578392530 | 578391500 | 0.000000e+00 | 1814 |
16 | TraesCS1A01G146100 | chr2A | 98.351 | 1031 | 15 | 2 | 995 | 2023 | 421217233 | 421218263 | 0.000000e+00 | 1808 |
17 | TraesCS1A01G146100 | chr2A | 98.351 | 1031 | 15 | 2 | 995 | 2023 | 486497568 | 486498598 | 0.000000e+00 | 1808 |
18 | TraesCS1A01G146100 | chr2A | 95.582 | 996 | 40 | 4 | 2 | 996 | 50096233 | 50097225 | 0.000000e+00 | 1592 |
19 | TraesCS1A01G146100 | chr6A | 98.448 | 1031 | 10 | 4 | 995 | 2023 | 58017303 | 58016277 | 0.000000e+00 | 1810 |
20 | TraesCS1A01G146100 | chr6A | 99.716 | 352 | 1 | 0 | 2018 | 2369 | 482706358 | 482706007 | 0.000000e+00 | 645 |
21 | TraesCS1A01G146100 | chr6A | 99.712 | 347 | 0 | 1 | 2024 | 2369 | 180112301 | 180111955 | 3.320000e-178 | 634 |
22 | TraesCS1A01G146100 | chr6A | 99.712 | 347 | 0 | 1 | 2024 | 2369 | 180120551 | 180120205 | 3.320000e-178 | 634 |
23 | TraesCS1A01G146100 | chr6A | 99.711 | 346 | 1 | 0 | 2024 | 2369 | 304376511 | 304376166 | 3.320000e-178 | 634 |
24 | TraesCS1A01G146100 | chr6A | 99.711 | 346 | 1 | 0 | 2024 | 2369 | 304385089 | 304384744 | 3.320000e-178 | 634 |
25 | TraesCS1A01G146100 | chr1D | 98.445 | 1029 | 14 | 2 | 997 | 2023 | 94052702 | 94051674 | 0.000000e+00 | 1810 |
26 | TraesCS1A01G146100 | chr7A | 96.088 | 997 | 28 | 6 | 4 | 996 | 545959722 | 545958733 | 0.000000e+00 | 1615 |
27 | TraesCS1A01G146100 | chr6B | 100.000 | 346 | 0 | 0 | 2024 | 2369 | 618707226 | 618707571 | 7.140000e-180 | 640 |
28 | TraesCS1A01G146100 | chr6B | 100.000 | 346 | 0 | 0 | 2024 | 2369 | 619147932 | 619148277 | 7.140000e-180 | 640 |
29 | TraesCS1A01G146100 | chr5B | 100.000 | 346 | 0 | 0 | 2024 | 2369 | 63913432 | 63913087 | 7.140000e-180 | 640 |
30 | TraesCS1A01G146100 | chr5B | 100.000 | 346 | 0 | 0 | 2024 | 2369 | 63922085 | 63921740 | 7.140000e-180 | 640 |
31 | TraesCS1A01G146100 | chr2B | 98.333 | 360 | 4 | 2 | 2012 | 2369 | 268376455 | 268376814 | 4.300000e-177 | 630 |
32 | TraesCS1A01G146100 | chrUn | 99.424 | 347 | 1 | 1 | 2024 | 2369 | 441634744 | 441635090 | 1.550000e-176 | 628 |
33 | TraesCS1A01G146100 | chrUn | 99.140 | 349 | 2 | 1 | 2022 | 2369 | 420546901 | 420547249 | 5.560000e-176 | 627 |
34 | TraesCS1A01G146100 | chrUn | 99.138 | 348 | 2 | 1 | 2023 | 2369 | 331724275 | 331724622 | 2.000000e-175 | 625 |
35 | TraesCS1A01G146100 | chrUn | 99.135 | 347 | 2 | 1 | 2024 | 2369 | 326195061 | 326194715 | 7.190000e-175 | 623 |
36 | TraesCS1A01G146100 | chrUn | 99.135 | 347 | 2 | 1 | 2024 | 2369 | 415142556 | 415142210 | 7.190000e-175 | 623 |
37 | TraesCS1A01G146100 | chrUn | 99.133 | 346 | 2 | 1 | 2024 | 2368 | 257153545 | 257153890 | 2.590000e-174 | 621 |
38 | TraesCS1A01G146100 | chrUn | 98.847 | 347 | 3 | 1 | 2024 | 2369 | 53678379 | 53678725 | 3.350000e-173 | 617 |
39 | TraesCS1A01G146100 | chrUn | 98.847 | 347 | 3 | 1 | 2024 | 2369 | 310021416 | 310021070 | 3.350000e-173 | 617 |
40 | TraesCS1A01G146100 | chrUn | 98.847 | 347 | 3 | 1 | 2024 | 2369 | 401137145 | 401137491 | 3.350000e-173 | 617 |
41 | TraesCS1A01G146100 | chr1B | 99.424 | 347 | 1 | 1 | 2024 | 2369 | 269153347 | 269153693 | 1.550000e-176 | 628 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G146100 | chr1A | 252494576 | 252496944 | 2368 | False | 4375 | 4375 | 100.000 | 1 | 2369 | 1 | chr1A.!!$F6 | 2368 |
1 | TraesCS1A01G146100 | chr1A | 252515213 | 252516243 | 1030 | False | 1808 | 1808 | 98.351 | 995 | 2023 | 1 | chr1A.!!$F7 | 1028 |
2 | TraesCS1A01G146100 | chr1A | 252487606 | 252488599 | 993 | False | 1642 | 1642 | 96.507 | 1 | 995 | 1 | chr1A.!!$F5 | 994 |
3 | TraesCS1A01G146100 | chr1A | 254049430 | 254050419 | 989 | True | 1622 | 1622 | 96.185 | 1 | 995 | 1 | chr1A.!!$R2 | 994 |
4 | TraesCS1A01G146100 | chr1A | 241115149 | 241116147 | 998 | False | 1620 | 1620 | 96.004 | 1 | 995 | 1 | chr1A.!!$F3 | 994 |
5 | TraesCS1A01G146100 | chr1A | 249848146 | 249849133 | 987 | False | 1615 | 1615 | 96.084 | 1 | 995 | 1 | chr1A.!!$F4 | 994 |
6 | TraesCS1A01G146100 | chr1A | 251544699 | 251545689 | 990 | True | 1613 | 1613 | 95.984 | 1 | 995 | 1 | chr1A.!!$R1 | 994 |
7 | TraesCS1A01G146100 | chr3A | 217718353 | 217719383 | 1030 | True | 1820 | 1820 | 98.545 | 995 | 2023 | 1 | chr3A.!!$R1 | 1028 |
8 | TraesCS1A01G146100 | chr3A | 637415085 | 637416078 | 993 | True | 1598 | 1598 | 95.691 | 1 | 995 | 1 | chr3A.!!$R2 | 994 |
9 | TraesCS1A01G146100 | chr3A | 593192979 | 593193969 | 990 | False | 1591 | 1591 | 95.582 | 1 | 995 | 1 | chr3A.!!$F1 | 994 |
10 | TraesCS1A01G146100 | chr4A | 357684054 | 357685084 | 1030 | False | 1814 | 1814 | 98.448 | 995 | 2023 | 1 | chr4A.!!$F1 | 1028 |
11 | TraesCS1A01G146100 | chr4A | 495111154 | 495112184 | 1030 | False | 1808 | 1808 | 98.351 | 995 | 2023 | 1 | chr4A.!!$F2 | 1028 |
12 | TraesCS1A01G146100 | chr2A | 578391500 | 578392530 | 1030 | True | 1814 | 1814 | 98.448 | 995 | 2023 | 1 | chr2A.!!$R1 | 1028 |
13 | TraesCS1A01G146100 | chr2A | 421217233 | 421218263 | 1030 | False | 1808 | 1808 | 98.351 | 995 | 2023 | 1 | chr2A.!!$F2 | 1028 |
14 | TraesCS1A01G146100 | chr2A | 486497568 | 486498598 | 1030 | False | 1808 | 1808 | 98.351 | 995 | 2023 | 1 | chr2A.!!$F3 | 1028 |
15 | TraesCS1A01G146100 | chr2A | 50096233 | 50097225 | 992 | False | 1592 | 1592 | 95.582 | 2 | 996 | 1 | chr2A.!!$F1 | 994 |
16 | TraesCS1A01G146100 | chr6A | 58016277 | 58017303 | 1026 | True | 1810 | 1810 | 98.448 | 995 | 2023 | 1 | chr6A.!!$R1 | 1028 |
17 | TraesCS1A01G146100 | chr1D | 94051674 | 94052702 | 1028 | True | 1810 | 1810 | 98.445 | 997 | 2023 | 1 | chr1D.!!$R1 | 1026 |
18 | TraesCS1A01G146100 | chr7A | 545958733 | 545959722 | 989 | True | 1615 | 1615 | 96.088 | 4 | 996 | 1 | chr7A.!!$R1 | 992 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
698 | 708 | 0.037232 | AAGCCCTGCGACAGTAGAAC | 60.037 | 55.0 | 6.19 | 0.0 | 31.28 | 3.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2105 | 2440 | 1.00545 | GCTAGGGTTTGAACATCCCCA | 59.995 | 52.381 | 10.47 | 0.12 | 41.95 | 4.96 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
369 | 379 | 2.288598 | TAGTGGAGAGAGAGAGGGGA | 57.711 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
429 | 439 | 0.400670 | ATTGGACTAGGAGAGGGGGC | 60.401 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
430 | 440 | 2.522193 | GGACTAGGAGAGGGGGCG | 60.522 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
432 | 442 | 4.862823 | ACTAGGAGAGGGGGCGGC | 62.863 | 72.222 | 0.00 | 0.00 | 0.00 | 6.53 |
520 | 530 | 4.821589 | GGACTCCTCCTTGGCGCG | 62.822 | 72.222 | 0.00 | 0.00 | 33.07 | 6.86 |
650 | 660 | 1.352622 | GCCCCCATCCACCATAGTCA | 61.353 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
698 | 708 | 0.037232 | AAGCCCTGCGACAGTAGAAC | 60.037 | 55.000 | 6.19 | 0.00 | 31.28 | 3.01 |
708 | 718 | 4.082245 | TGCGACAGTAGAACATCAAGATCA | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
874 | 884 | 2.248280 | ACATCAACCACGTTGTGCTA | 57.752 | 45.000 | 4.56 | 0.00 | 43.23 | 3.49 |
875 | 885 | 2.566913 | ACATCAACCACGTTGTGCTAA | 58.433 | 42.857 | 4.56 | 0.00 | 43.23 | 3.09 |
876 | 886 | 3.146066 | ACATCAACCACGTTGTGCTAAT | 58.854 | 40.909 | 4.56 | 0.00 | 43.23 | 1.73 |
877 | 887 | 3.058293 | ACATCAACCACGTTGTGCTAATG | 60.058 | 43.478 | 4.56 | 3.73 | 43.23 | 1.90 |
878 | 888 | 1.265635 | TCAACCACGTTGTGCTAATGC | 59.734 | 47.619 | 4.56 | 0.00 | 43.23 | 3.56 |
879 | 889 | 1.266718 | CAACCACGTTGTGCTAATGCT | 59.733 | 47.619 | 0.00 | 0.00 | 38.56 | 3.79 |
920 | 930 | 1.680207 | GTACGTAGATCACACTCCCCC | 59.320 | 57.143 | 0.00 | 0.00 | 0.00 | 5.40 |
934 | 944 | 2.588877 | CCCCCTCGCGTTGCTATG | 60.589 | 66.667 | 5.77 | 0.00 | 0.00 | 2.23 |
935 | 945 | 3.272334 | CCCCTCGCGTTGCTATGC | 61.272 | 66.667 | 5.77 | 1.93 | 0.00 | 3.14 |
936 | 946 | 2.511373 | CCCTCGCGTTGCTATGCA | 60.511 | 61.111 | 12.77 | 0.00 | 35.99 | 3.96 |
937 | 947 | 1.889105 | CCCTCGCGTTGCTATGCAT | 60.889 | 57.895 | 12.77 | 3.79 | 38.76 | 3.96 |
938 | 948 | 1.566563 | CCTCGCGTTGCTATGCATC | 59.433 | 57.895 | 0.19 | 0.00 | 38.76 | 3.91 |
939 | 949 | 1.153597 | CCTCGCGTTGCTATGCATCA | 61.154 | 55.000 | 0.19 | 0.00 | 38.76 | 3.07 |
940 | 950 | 0.042708 | CTCGCGTTGCTATGCATCAC | 60.043 | 55.000 | 0.19 | 0.00 | 38.76 | 3.06 |
941 | 951 | 1.010797 | CGCGTTGCTATGCATCACC | 60.011 | 57.895 | 0.19 | 0.00 | 38.76 | 4.02 |
942 | 952 | 1.704387 | CGCGTTGCTATGCATCACCA | 61.704 | 55.000 | 0.19 | 0.00 | 38.76 | 4.17 |
943 | 953 | 0.664761 | GCGTTGCTATGCATCACCAT | 59.335 | 50.000 | 0.19 | 0.00 | 38.76 | 3.55 |
944 | 954 | 1.598676 | GCGTTGCTATGCATCACCATG | 60.599 | 52.381 | 0.19 | 0.00 | 38.76 | 3.66 |
945 | 955 | 1.941975 | CGTTGCTATGCATCACCATGA | 59.058 | 47.619 | 0.19 | 0.00 | 38.76 | 3.07 |
946 | 956 | 2.551032 | CGTTGCTATGCATCACCATGAT | 59.449 | 45.455 | 0.19 | 0.00 | 38.76 | 2.45 |
947 | 957 | 3.364664 | CGTTGCTATGCATCACCATGATC | 60.365 | 47.826 | 0.19 | 0.00 | 38.76 | 2.92 |
948 | 958 | 3.782656 | TGCTATGCATCACCATGATCT | 57.217 | 42.857 | 0.19 | 0.00 | 34.28 | 2.75 |
949 | 959 | 4.094830 | TGCTATGCATCACCATGATCTT | 57.905 | 40.909 | 0.19 | 0.00 | 34.28 | 2.40 |
950 | 960 | 3.818773 | TGCTATGCATCACCATGATCTTG | 59.181 | 43.478 | 0.19 | 1.60 | 34.28 | 3.02 |
951 | 961 | 3.819337 | GCTATGCATCACCATGATCTTGT | 59.181 | 43.478 | 0.19 | 0.00 | 34.28 | 3.16 |
952 | 962 | 4.320275 | GCTATGCATCACCATGATCTTGTG | 60.320 | 45.833 | 0.19 | 5.83 | 34.28 | 3.33 |
953 | 963 | 3.076079 | TGCATCACCATGATCTTGTGT | 57.924 | 42.857 | 7.73 | 3.11 | 34.28 | 3.72 |
954 | 964 | 2.750712 | TGCATCACCATGATCTTGTGTG | 59.249 | 45.455 | 17.02 | 17.02 | 34.28 | 3.82 |
955 | 965 | 2.751259 | GCATCACCATGATCTTGTGTGT | 59.249 | 45.455 | 19.89 | 6.63 | 34.28 | 3.72 |
956 | 966 | 3.427098 | GCATCACCATGATCTTGTGTGTG | 60.427 | 47.826 | 19.89 | 14.96 | 34.28 | 3.82 |
957 | 967 | 2.153645 | TCACCATGATCTTGTGTGTGC | 58.846 | 47.619 | 19.89 | 0.00 | 0.00 | 4.57 |
958 | 968 | 1.135888 | CACCATGATCTTGTGTGTGCG | 60.136 | 52.381 | 15.81 | 1.66 | 0.00 | 5.34 |
959 | 969 | 1.159285 | CCATGATCTTGTGTGTGCGT | 58.841 | 50.000 | 7.73 | 0.00 | 0.00 | 5.24 |
960 | 970 | 2.289382 | ACCATGATCTTGTGTGTGCGTA | 60.289 | 45.455 | 7.73 | 0.00 | 0.00 | 4.42 |
961 | 971 | 2.349580 | CCATGATCTTGTGTGTGCGTAG | 59.650 | 50.000 | 7.73 | 0.00 | 0.00 | 3.51 |
962 | 972 | 2.078849 | TGATCTTGTGTGTGCGTAGG | 57.921 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
963 | 973 | 1.616374 | TGATCTTGTGTGTGCGTAGGA | 59.384 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
964 | 974 | 2.036604 | TGATCTTGTGTGTGCGTAGGAA | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
965 | 975 | 2.605837 | TCTTGTGTGTGCGTAGGAAA | 57.394 | 45.000 | 0.00 | 0.00 | 0.00 | 3.13 |
966 | 976 | 3.120321 | TCTTGTGTGTGCGTAGGAAAT | 57.880 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
967 | 977 | 3.472652 | TCTTGTGTGTGCGTAGGAAATT | 58.527 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
968 | 978 | 3.880490 | TCTTGTGTGTGCGTAGGAAATTT | 59.120 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
969 | 979 | 4.336993 | TCTTGTGTGTGCGTAGGAAATTTT | 59.663 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
970 | 980 | 4.640789 | TGTGTGTGCGTAGGAAATTTTT | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
993 | 1003 | 8.631676 | TTTTTGAAATTACTACGAAACCCAAC | 57.368 | 30.769 | 0.00 | 0.00 | 0.00 | 3.77 |
1339 | 1457 | 2.460757 | ATTGGCCAAGTCAAATGCAC | 57.539 | 45.000 | 24.94 | 0.00 | 28.60 | 4.57 |
1506 | 1737 | 1.735376 | GCGGCGAATCCAGGAGTCTA | 61.735 | 60.000 | 12.98 | 0.00 | 34.01 | 2.59 |
1772 | 2107 | 6.296317 | CCATACAATGAAGCTATGGGAGAGAT | 60.296 | 42.308 | 2.00 | 0.00 | 35.26 | 2.75 |
1972 | 2307 | 1.018752 | CGCGGAATGTCATGTGGTGA | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2033 | 2368 | 3.474600 | CTCATCAAGGATGTCACATCCC | 58.525 | 50.000 | 30.17 | 14.48 | 40.55 | 3.85 |
2034 | 2369 | 3.117745 | TCATCAAGGATGTCACATCCCT | 58.882 | 45.455 | 30.17 | 17.53 | 40.55 | 4.20 |
2035 | 2370 | 4.297768 | TCATCAAGGATGTCACATCCCTA | 58.702 | 43.478 | 30.17 | 17.62 | 40.55 | 3.53 |
2036 | 2371 | 4.346127 | TCATCAAGGATGTCACATCCCTAG | 59.654 | 45.833 | 30.17 | 20.56 | 40.55 | 3.02 |
2037 | 2372 | 2.435805 | TCAAGGATGTCACATCCCTAGC | 59.564 | 50.000 | 30.17 | 7.96 | 38.98 | 3.42 |
2038 | 2373 | 2.437281 | CAAGGATGTCACATCCCTAGCT | 59.563 | 50.000 | 30.17 | 11.24 | 38.98 | 3.32 |
2039 | 2374 | 2.769209 | AGGATGTCACATCCCTAGCTT | 58.231 | 47.619 | 30.17 | 10.51 | 38.98 | 3.74 |
2040 | 2375 | 2.703007 | AGGATGTCACATCCCTAGCTTC | 59.297 | 50.000 | 30.17 | 5.80 | 38.98 | 3.86 |
2041 | 2376 | 2.703007 | GGATGTCACATCCCTAGCTTCT | 59.297 | 50.000 | 24.76 | 0.00 | 32.09 | 2.85 |
2042 | 2377 | 3.494048 | GGATGTCACATCCCTAGCTTCTG | 60.494 | 52.174 | 24.76 | 0.00 | 32.09 | 3.02 |
2043 | 2378 | 1.833630 | TGTCACATCCCTAGCTTCTGG | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2044 | 2379 | 1.834263 | GTCACATCCCTAGCTTCTGGT | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
2045 | 2380 | 3.031736 | GTCACATCCCTAGCTTCTGGTA | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
2046 | 2381 | 3.451178 | GTCACATCCCTAGCTTCTGGTAA | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
2047 | 2382 | 4.101741 | GTCACATCCCTAGCTTCTGGTAAT | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
2048 | 2383 | 4.101585 | TCACATCCCTAGCTTCTGGTAATG | 59.898 | 45.833 | 0.00 | 1.87 | 0.00 | 1.90 |
2049 | 2384 | 3.181450 | ACATCCCTAGCTTCTGGTAATGC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
2050 | 2385 | 2.764269 | TCCCTAGCTTCTGGTAATGCT | 58.236 | 47.619 | 0.00 | 0.00 | 39.30 | 3.79 |
2051 | 2386 | 2.700897 | TCCCTAGCTTCTGGTAATGCTC | 59.299 | 50.000 | 0.00 | 0.00 | 37.02 | 4.26 |
2052 | 2387 | 2.703007 | CCCTAGCTTCTGGTAATGCTCT | 59.297 | 50.000 | 0.00 | 0.00 | 37.02 | 4.09 |
2053 | 2388 | 3.494048 | CCCTAGCTTCTGGTAATGCTCTG | 60.494 | 52.174 | 0.00 | 0.00 | 37.02 | 3.35 |
2054 | 2389 | 3.386078 | CCTAGCTTCTGGTAATGCTCTGA | 59.614 | 47.826 | 0.00 | 0.00 | 37.02 | 3.27 |
2055 | 2390 | 3.540314 | AGCTTCTGGTAATGCTCTGAG | 57.460 | 47.619 | 0.00 | 0.00 | 0.00 | 3.35 |
2056 | 2391 | 1.939255 | GCTTCTGGTAATGCTCTGAGC | 59.061 | 52.381 | 22.38 | 22.38 | 42.82 | 4.26 |
2057 | 2392 | 2.419851 | GCTTCTGGTAATGCTCTGAGCT | 60.420 | 50.000 | 28.04 | 13.30 | 42.97 | 4.09 |
2058 | 2393 | 3.181471 | GCTTCTGGTAATGCTCTGAGCTA | 60.181 | 47.826 | 28.04 | 16.02 | 42.97 | 3.32 |
2059 | 2394 | 4.619973 | CTTCTGGTAATGCTCTGAGCTAG | 58.380 | 47.826 | 28.04 | 16.22 | 42.97 | 3.42 |
2060 | 2395 | 2.363680 | TCTGGTAATGCTCTGAGCTAGC | 59.636 | 50.000 | 28.04 | 21.67 | 42.97 | 3.42 |
2061 | 2396 | 2.364970 | CTGGTAATGCTCTGAGCTAGCT | 59.635 | 50.000 | 28.04 | 19.45 | 42.97 | 3.32 |
2062 | 2397 | 3.566351 | TGGTAATGCTCTGAGCTAGCTA | 58.434 | 45.455 | 28.04 | 9.99 | 42.97 | 3.32 |
2063 | 2398 | 3.571828 | TGGTAATGCTCTGAGCTAGCTAG | 59.428 | 47.826 | 28.04 | 16.84 | 42.97 | 3.42 |
2064 | 2399 | 3.572255 | GGTAATGCTCTGAGCTAGCTAGT | 59.428 | 47.826 | 28.04 | 11.12 | 42.97 | 2.57 |
2065 | 2400 | 4.320935 | GGTAATGCTCTGAGCTAGCTAGTC | 60.321 | 50.000 | 28.04 | 16.85 | 42.97 | 2.59 |
2066 | 2401 | 2.426842 | TGCTCTGAGCTAGCTAGTCA | 57.573 | 50.000 | 28.04 | 19.91 | 42.97 | 3.41 |
2067 | 2402 | 2.942804 | TGCTCTGAGCTAGCTAGTCAT | 58.057 | 47.619 | 28.04 | 8.63 | 42.97 | 3.06 |
2068 | 2403 | 2.622470 | TGCTCTGAGCTAGCTAGTCATG | 59.378 | 50.000 | 28.04 | 17.06 | 42.97 | 3.07 |
2069 | 2404 | 2.622942 | GCTCTGAGCTAGCTAGTCATGT | 59.377 | 50.000 | 19.38 | 0.00 | 38.45 | 3.21 |
2070 | 2405 | 3.550639 | GCTCTGAGCTAGCTAGTCATGTG | 60.551 | 52.174 | 19.38 | 15.89 | 38.45 | 3.21 |
2071 | 2406 | 3.625853 | TCTGAGCTAGCTAGTCATGTGT | 58.374 | 45.455 | 19.38 | 0.00 | 0.00 | 3.72 |
2072 | 2407 | 4.019858 | TCTGAGCTAGCTAGTCATGTGTT | 58.980 | 43.478 | 19.38 | 0.00 | 0.00 | 3.32 |
2073 | 2408 | 4.111198 | CTGAGCTAGCTAGTCATGTGTTG | 58.889 | 47.826 | 19.38 | 7.75 | 0.00 | 3.33 |
2074 | 2409 | 2.863137 | GAGCTAGCTAGTCATGTGTTGC | 59.137 | 50.000 | 19.38 | 4.48 | 0.00 | 4.17 |
2075 | 2410 | 2.234661 | AGCTAGCTAGTCATGTGTTGCA | 59.765 | 45.455 | 17.69 | 0.00 | 0.00 | 4.08 |
2076 | 2411 | 3.118482 | AGCTAGCTAGTCATGTGTTGCAT | 60.118 | 43.478 | 17.69 | 0.00 | 38.60 | 3.96 |
2077 | 2412 | 3.247173 | GCTAGCTAGTCATGTGTTGCATC | 59.753 | 47.826 | 21.62 | 0.00 | 35.19 | 3.91 |
2078 | 2413 | 3.339253 | AGCTAGTCATGTGTTGCATCA | 57.661 | 42.857 | 0.00 | 0.00 | 35.19 | 3.07 |
2079 | 2414 | 3.882444 | AGCTAGTCATGTGTTGCATCAT | 58.118 | 40.909 | 0.00 | 0.00 | 35.19 | 2.45 |
2080 | 2415 | 3.626217 | AGCTAGTCATGTGTTGCATCATG | 59.374 | 43.478 | 15.98 | 15.98 | 41.64 | 3.07 |
2081 | 2416 | 3.376234 | GCTAGTCATGTGTTGCATCATGT | 59.624 | 43.478 | 19.20 | 9.49 | 41.22 | 3.21 |
2082 | 2417 | 4.142534 | GCTAGTCATGTGTTGCATCATGTT | 60.143 | 41.667 | 19.20 | 13.99 | 41.22 | 2.71 |
2083 | 2418 | 4.859304 | AGTCATGTGTTGCATCATGTTT | 57.141 | 36.364 | 19.20 | 10.80 | 41.22 | 2.83 |
2084 | 2419 | 5.963176 | AGTCATGTGTTGCATCATGTTTA | 57.037 | 34.783 | 19.20 | 5.45 | 41.22 | 2.01 |
2085 | 2420 | 6.330004 | AGTCATGTGTTGCATCATGTTTAA | 57.670 | 33.333 | 19.20 | 5.20 | 41.22 | 1.52 |
2086 | 2421 | 6.747125 | AGTCATGTGTTGCATCATGTTTAAA | 58.253 | 32.000 | 19.20 | 0.00 | 41.22 | 1.52 |
2087 | 2422 | 7.380536 | AGTCATGTGTTGCATCATGTTTAAAT | 58.619 | 30.769 | 19.20 | 4.74 | 41.22 | 1.40 |
2088 | 2423 | 7.874016 | AGTCATGTGTTGCATCATGTTTAAATT | 59.126 | 29.630 | 19.20 | 2.89 | 41.22 | 1.82 |
2089 | 2424 | 8.497554 | GTCATGTGTTGCATCATGTTTAAATTT | 58.502 | 29.630 | 19.20 | 0.00 | 41.22 | 1.82 |
2090 | 2425 | 9.053840 | TCATGTGTTGCATCATGTTTAAATTTT | 57.946 | 25.926 | 19.20 | 0.00 | 41.22 | 1.82 |
2091 | 2426 | 9.108449 | CATGTGTTGCATCATGTTTAAATTTTG | 57.892 | 29.630 | 14.67 | 0.00 | 37.31 | 2.44 |
2092 | 2427 | 7.130917 | TGTGTTGCATCATGTTTAAATTTTGC | 58.869 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
2093 | 2428 | 6.578172 | GTGTTGCATCATGTTTAAATTTTGCC | 59.422 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
2094 | 2429 | 6.485984 | TGTTGCATCATGTTTAAATTTTGCCT | 59.514 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
2095 | 2430 | 7.658982 | TGTTGCATCATGTTTAAATTTTGCCTA | 59.341 | 29.630 | 0.00 | 0.00 | 0.00 | 3.93 |
2096 | 2431 | 8.502387 | GTTGCATCATGTTTAAATTTTGCCTAA | 58.498 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2097 | 2432 | 8.613060 | TGCATCATGTTTAAATTTTGCCTAAA | 57.387 | 26.923 | 0.00 | 0.00 | 0.00 | 1.85 |
2098 | 2433 | 9.060347 | TGCATCATGTTTAAATTTTGCCTAAAA | 57.940 | 25.926 | 0.00 | 0.00 | 39.86 | 1.52 |
2110 | 2445 | 5.832539 | TTTGCCTAAAATTGAAATGGGGA | 57.167 | 34.783 | 0.00 | 0.00 | 0.00 | 4.81 |
2111 | 2446 | 6.385766 | TTTGCCTAAAATTGAAATGGGGAT | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2112 | 2447 | 5.356291 | TGCCTAAAATTGAAATGGGGATG | 57.644 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
2113 | 2448 | 4.782156 | TGCCTAAAATTGAAATGGGGATGT | 59.218 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2114 | 2449 | 5.250313 | TGCCTAAAATTGAAATGGGGATGTT | 59.750 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2115 | 2450 | 5.817296 | GCCTAAAATTGAAATGGGGATGTTC | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2116 | 2451 | 6.576045 | GCCTAAAATTGAAATGGGGATGTTCA | 60.576 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2117 | 2452 | 7.393216 | CCTAAAATTGAAATGGGGATGTTCAA | 58.607 | 34.615 | 0.98 | 0.98 | 43.36 | 2.69 |
2118 | 2453 | 7.882271 | CCTAAAATTGAAATGGGGATGTTCAAA | 59.118 | 33.333 | 2.52 | 0.00 | 42.70 | 2.69 |
2119 | 2454 | 7.509141 | AAAATTGAAATGGGGATGTTCAAAC | 57.491 | 32.000 | 2.52 | 0.00 | 42.70 | 2.93 |
2120 | 2455 | 4.615588 | TTGAAATGGGGATGTTCAAACC | 57.384 | 40.909 | 0.00 | 0.00 | 38.09 | 3.27 |
2121 | 2456 | 2.903135 | TGAAATGGGGATGTTCAAACCC | 59.097 | 45.455 | 0.00 | 0.00 | 43.64 | 4.11 |
2122 | 2457 | 3.173151 | GAAATGGGGATGTTCAAACCCT | 58.827 | 45.455 | 13.51 | 0.00 | 43.72 | 4.34 |
2123 | 2458 | 4.202727 | TGAAATGGGGATGTTCAAACCCTA | 60.203 | 41.667 | 13.51 | 10.25 | 43.72 | 3.53 |
2124 | 2459 | 3.669939 | ATGGGGATGTTCAAACCCTAG | 57.330 | 47.619 | 13.51 | 0.00 | 43.72 | 3.02 |
2125 | 2460 | 1.005450 | TGGGGATGTTCAAACCCTAGC | 59.995 | 52.381 | 13.51 | 0.00 | 43.72 | 3.42 |
2126 | 2461 | 1.005450 | GGGGATGTTCAAACCCTAGCA | 59.995 | 52.381 | 14.30 | 0.00 | 42.86 | 3.49 |
2127 | 2462 | 2.358195 | GGGGATGTTCAAACCCTAGCAT | 60.358 | 50.000 | 14.30 | 0.00 | 42.86 | 3.79 |
2128 | 2463 | 3.365472 | GGGATGTTCAAACCCTAGCATT | 58.635 | 45.455 | 0.00 | 0.00 | 40.39 | 3.56 |
2129 | 2464 | 4.532834 | GGGATGTTCAAACCCTAGCATTA | 58.467 | 43.478 | 0.00 | 0.00 | 40.39 | 1.90 |
2130 | 2465 | 4.953579 | GGGATGTTCAAACCCTAGCATTAA | 59.046 | 41.667 | 0.00 | 0.00 | 40.39 | 1.40 |
2131 | 2466 | 5.420739 | GGGATGTTCAAACCCTAGCATTAAA | 59.579 | 40.000 | 0.00 | 0.00 | 40.39 | 1.52 |
2132 | 2467 | 6.098266 | GGGATGTTCAAACCCTAGCATTAAAT | 59.902 | 38.462 | 0.00 | 0.00 | 40.39 | 1.40 |
2133 | 2468 | 7.203218 | GGATGTTCAAACCCTAGCATTAAATC | 58.797 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
2134 | 2469 | 7.147915 | GGATGTTCAAACCCTAGCATTAAATCA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2135 | 2470 | 7.531857 | TGTTCAAACCCTAGCATTAAATCAA | 57.468 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2136 | 2471 | 7.375053 | TGTTCAAACCCTAGCATTAAATCAAC | 58.625 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2139 | 2474 | 6.945435 | TCAAACCCTAGCATTAAATCAACTCA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2142 | 2477 | 6.485171 | ACCCTAGCATTAAATCAACTCAACT | 58.515 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2149 | 2484 | 8.107095 | AGCATTAAATCAACTCAACTAGGGTAA | 58.893 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2155 | 2490 | 9.856162 | AAATCAACTCAACTAGGGTAAGTTAAA | 57.144 | 29.630 | 0.00 | 0.00 | 37.61 | 1.52 |
2156 | 2491 | 9.856162 | AATCAACTCAACTAGGGTAAGTTAAAA | 57.144 | 29.630 | 0.00 | 0.00 | 37.61 | 1.52 |
2159 | 2494 | 9.503399 | CAACTCAACTAGGGTAAGTTAAAATCT | 57.497 | 33.333 | 0.00 | 0.00 | 37.61 | 2.40 |
2179 | 2514 | 7.744087 | AATCTTTTCAATAAACCCAAAAGGC | 57.256 | 32.000 | 0.00 | 0.00 | 40.58 | 4.35 |
2180 | 2515 | 5.616270 | TCTTTTCAATAAACCCAAAAGGCC | 58.384 | 37.500 | 0.00 | 0.00 | 40.58 | 5.19 |
2181 | 2516 | 4.359434 | TTTCAATAAACCCAAAAGGCCC | 57.641 | 40.909 | 0.00 | 0.00 | 40.58 | 5.80 |
2182 | 2517 | 3.268034 | TCAATAAACCCAAAAGGCCCT | 57.732 | 42.857 | 0.00 | 0.00 | 40.58 | 5.19 |
2184 | 2519 | 4.753186 | TCAATAAACCCAAAAGGCCCTAA | 58.247 | 39.130 | 0.00 | 0.00 | 40.58 | 2.69 |
2185 | 2520 | 4.775253 | TCAATAAACCCAAAAGGCCCTAAG | 59.225 | 41.667 | 0.00 | 0.00 | 40.58 | 2.18 |
2187 | 2522 | 3.338110 | AAACCCAAAAGGCCCTAAGAA | 57.662 | 42.857 | 0.00 | 0.00 | 40.58 | 2.52 |
2188 | 2523 | 3.338110 | AACCCAAAAGGCCCTAAGAAA | 57.662 | 42.857 | 0.00 | 0.00 | 40.58 | 2.52 |
2190 | 2525 | 3.239449 | ACCCAAAAGGCCCTAAGAAAAG | 58.761 | 45.455 | 0.00 | 0.00 | 40.58 | 2.27 |
2191 | 2526 | 3.239449 | CCCAAAAGGCCCTAAGAAAAGT | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2192 | 2527 | 3.646162 | CCCAAAAGGCCCTAAGAAAAGTT | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
2193 | 2528 | 4.262463 | CCCAAAAGGCCCTAAGAAAAGTTC | 60.262 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2194 | 2529 | 4.343814 | CCAAAAGGCCCTAAGAAAAGTTCA | 59.656 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2196 | 2531 | 5.728637 | AAAGGCCCTAAGAAAAGTTCATG | 57.271 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
2197 | 2532 | 4.657814 | AGGCCCTAAGAAAAGTTCATGA | 57.342 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
2198 | 2533 | 5.198602 | AGGCCCTAAGAAAAGTTCATGAT | 57.801 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
2199 | 2534 | 5.583932 | AGGCCCTAAGAAAAGTTCATGATT | 58.416 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2200 | 2535 | 6.019108 | AGGCCCTAAGAAAAGTTCATGATTT | 58.981 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2201 | 2536 | 6.153510 | AGGCCCTAAGAAAAGTTCATGATTTC | 59.846 | 38.462 | 10.89 | 10.89 | 34.14 | 2.17 |
2202 | 2537 | 6.153510 | GGCCCTAAGAAAAGTTCATGATTTCT | 59.846 | 38.462 | 14.35 | 14.35 | 43.32 | 2.52 |
2203 | 2538 | 7.031975 | GCCCTAAGAAAAGTTCATGATTTCTG | 58.968 | 38.462 | 18.82 | 10.37 | 41.28 | 3.02 |
2204 | 2539 | 7.542025 | CCCTAAGAAAAGTTCATGATTTCTGG | 58.458 | 38.462 | 18.82 | 16.32 | 41.28 | 3.86 |
2205 | 2540 | 7.177392 | CCCTAAGAAAAGTTCATGATTTCTGGT | 59.823 | 37.037 | 18.82 | 10.12 | 41.28 | 4.00 |
2206 | 2541 | 8.579863 | CCTAAGAAAAGTTCATGATTTCTGGTT | 58.420 | 33.333 | 18.82 | 9.58 | 41.28 | 3.67 |
2209 | 2544 | 9.971922 | AAGAAAAGTTCATGATTTCTGGTTAAG | 57.028 | 29.630 | 18.82 | 0.00 | 41.28 | 1.85 |
2210 | 2545 | 8.579863 | AGAAAAGTTCATGATTTCTGGTTAAGG | 58.420 | 33.333 | 17.85 | 0.00 | 40.77 | 2.69 |
2211 | 2546 | 7.839680 | AAAGTTCATGATTTCTGGTTAAGGT | 57.160 | 32.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2212 | 2547 | 6.824305 | AGTTCATGATTTCTGGTTAAGGTG | 57.176 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
2213 | 2548 | 5.711976 | AGTTCATGATTTCTGGTTAAGGTGG | 59.288 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2214 | 2549 | 5.512942 | TCATGATTTCTGGTTAAGGTGGA | 57.487 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2215 | 2550 | 5.886609 | TCATGATTTCTGGTTAAGGTGGAA | 58.113 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
2216 | 2551 | 6.310941 | TCATGATTTCTGGTTAAGGTGGAAA | 58.689 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2217 | 2552 | 6.208599 | TCATGATTTCTGGTTAAGGTGGAAAC | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 2.78 |
2218 | 2553 | 4.830600 | TGATTTCTGGTTAAGGTGGAAACC | 59.169 | 41.667 | 0.00 | 0.00 | 44.51 | 3.27 |
2219 | 2554 | 4.529716 | TTTCTGGTTAAGGTGGAAACCT | 57.470 | 40.909 | 5.88 | 0.00 | 44.55 | 3.50 |
2220 | 2555 | 3.782656 | TCTGGTTAAGGTGGAAACCTC | 57.217 | 47.619 | 0.00 | 0.00 | 44.55 | 3.85 |
2221 | 2556 | 3.323775 | TCTGGTTAAGGTGGAAACCTCT | 58.676 | 45.455 | 0.00 | 0.00 | 44.55 | 3.69 |
2222 | 2557 | 3.072476 | TCTGGTTAAGGTGGAAACCTCTG | 59.928 | 47.826 | 0.00 | 0.00 | 44.55 | 3.35 |
2223 | 2558 | 2.160205 | GGTTAAGGTGGAAACCTCTGC | 58.840 | 52.381 | 0.00 | 0.00 | 41.63 | 4.26 |
2224 | 2559 | 2.160205 | GTTAAGGTGGAAACCTCTGCC | 58.840 | 52.381 | 0.00 | 0.00 | 39.65 | 4.85 |
2225 | 2560 | 1.440618 | TAAGGTGGAAACCTCTGCCA | 58.559 | 50.000 | 0.00 | 0.00 | 39.65 | 4.92 |
2226 | 2561 | 0.555769 | AAGGTGGAAACCTCTGCCAA | 59.444 | 50.000 | 0.00 | 0.00 | 39.65 | 4.52 |
2227 | 2562 | 0.555769 | AGGTGGAAACCTCTGCCAAA | 59.444 | 50.000 | 0.00 | 0.00 | 34.41 | 3.28 |
2228 | 2563 | 1.063266 | AGGTGGAAACCTCTGCCAAAA | 60.063 | 47.619 | 0.00 | 0.00 | 34.41 | 2.44 |
2229 | 2564 | 1.760029 | GGTGGAAACCTCTGCCAAAAA | 59.240 | 47.619 | 0.00 | 0.00 | 32.68 | 1.94 |
2230 | 2565 | 2.368548 | GGTGGAAACCTCTGCCAAAAAT | 59.631 | 45.455 | 0.00 | 0.00 | 32.68 | 1.82 |
2231 | 2566 | 3.392882 | GTGGAAACCTCTGCCAAAAATG | 58.607 | 45.455 | 0.00 | 0.00 | 32.68 | 2.32 |
2232 | 2567 | 3.069443 | GTGGAAACCTCTGCCAAAAATGA | 59.931 | 43.478 | 0.00 | 0.00 | 32.68 | 2.57 |
2233 | 2568 | 3.903090 | TGGAAACCTCTGCCAAAAATGAT | 59.097 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
2234 | 2569 | 4.248058 | GGAAACCTCTGCCAAAAATGATG | 58.752 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
2235 | 2570 | 4.021192 | GGAAACCTCTGCCAAAAATGATGA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
2236 | 2571 | 5.511202 | GGAAACCTCTGCCAAAAATGATGAA | 60.511 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2238 | 2573 | 6.855763 | AACCTCTGCCAAAAATGATGAATA | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
2240 | 2575 | 8.537728 | AACCTCTGCCAAAAATGATGAATATA | 57.462 | 30.769 | 0.00 | 0.00 | 0.00 | 0.86 |
2242 | 2577 | 8.800332 | ACCTCTGCCAAAAATGATGAATATATC | 58.200 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
2244 | 2579 | 8.945195 | TCTGCCAAAAATGATGAATATATCCT | 57.055 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
2266 | 2602 | 8.256356 | TCCTTAGGTCATTTTTGGATTTTTGA | 57.744 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
2268 | 2604 | 9.506018 | CCTTAGGTCATTTTTGGATTTTTGAAT | 57.494 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2296 | 2632 | 9.902684 | AAATCATATTGTATTTGAATTTGGGCA | 57.097 | 25.926 | 0.00 | 0.00 | 0.00 | 5.36 |
2299 | 2635 | 9.902684 | TCATATTGTATTTGAATTTGGGCATTT | 57.097 | 25.926 | 0.00 | 0.00 | 0.00 | 2.32 |
2345 | 2681 | 9.504708 | AATGCTCAAATAAATGTTGGAAATTGA | 57.495 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
2346 | 2682 | 9.675464 | ATGCTCAAATAAATGTTGGAAATTGAT | 57.325 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
2352 | 2688 | 8.962884 | AATAAATGTTGGAAATTGATAAGGGC | 57.037 | 30.769 | 0.00 | 0.00 | 0.00 | 5.19 |
2353 | 2689 | 5.357742 | AATGTTGGAAATTGATAAGGGCC | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 5.80 |
2354 | 2690 | 3.784178 | TGTTGGAAATTGATAAGGGCCA | 58.216 | 40.909 | 6.18 | 0.00 | 0.00 | 5.36 |
2355 | 2691 | 3.513515 | TGTTGGAAATTGATAAGGGCCAC | 59.486 | 43.478 | 6.18 | 0.00 | 0.00 | 5.01 |
2356 | 2692 | 3.756082 | TGGAAATTGATAAGGGCCACT | 57.244 | 42.857 | 6.18 | 0.00 | 0.00 | 4.00 |
2357 | 2693 | 3.364549 | TGGAAATTGATAAGGGCCACTG | 58.635 | 45.455 | 6.18 | 0.00 | 0.00 | 3.66 |
2358 | 2694 | 2.695147 | GGAAATTGATAAGGGCCACTGG | 59.305 | 50.000 | 6.18 | 0.00 | 0.00 | 4.00 |
2359 | 2695 | 3.627237 | GGAAATTGATAAGGGCCACTGGA | 60.627 | 47.826 | 6.18 | 0.00 | 0.00 | 3.86 |
2360 | 2696 | 3.756082 | AATTGATAAGGGCCACTGGAA | 57.244 | 42.857 | 6.18 | 0.00 | 0.00 | 3.53 |
2361 | 2697 | 3.979501 | ATTGATAAGGGCCACTGGAAT | 57.020 | 42.857 | 6.18 | 0.00 | 0.00 | 3.01 |
2362 | 2698 | 5.402054 | AATTGATAAGGGCCACTGGAATA | 57.598 | 39.130 | 6.18 | 0.00 | 0.00 | 1.75 |
2363 | 2699 | 4.871871 | TTGATAAGGGCCACTGGAATAA | 57.128 | 40.909 | 6.18 | 0.00 | 0.00 | 1.40 |
2364 | 2700 | 5.402054 | TTGATAAGGGCCACTGGAATAAT | 57.598 | 39.130 | 6.18 | 0.00 | 0.00 | 1.28 |
2365 | 2701 | 5.402054 | TGATAAGGGCCACTGGAATAATT | 57.598 | 39.130 | 6.18 | 0.00 | 0.00 | 1.40 |
2366 | 2702 | 5.385198 | TGATAAGGGCCACTGGAATAATTC | 58.615 | 41.667 | 6.18 | 0.00 | 0.00 | 2.17 |
2367 | 2703 | 3.756082 | AAGGGCCACTGGAATAATTCA | 57.244 | 42.857 | 6.18 | 0.00 | 0.00 | 2.57 |
2368 | 2704 | 3.303351 | AGGGCCACTGGAATAATTCAG | 57.697 | 47.619 | 6.18 | 0.00 | 37.07 | 3.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
98 | 99 | 2.735134 | GTCATCGAAACCTTAAGCGTGT | 59.265 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
538 | 548 | 0.423544 | AAGGATCAAGGGGAGGAGGT | 59.576 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
637 | 647 | 8.762645 | ACAATATTATCGATGACTATGGTGGAT | 58.237 | 33.333 | 8.54 | 0.00 | 0.00 | 3.41 |
650 | 660 | 5.073311 | AGCACCGCTACAATATTATCGAT | 57.927 | 39.130 | 2.16 | 2.16 | 36.99 | 3.59 |
698 | 708 | 1.600957 | GGCGTGGTGATGATCTTGATG | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
874 | 884 | 2.386661 | AGATCGACAACGGAAGCATT | 57.613 | 45.000 | 0.00 | 0.00 | 40.21 | 3.56 |
875 | 885 | 2.165641 | TGTAGATCGACAACGGAAGCAT | 59.834 | 45.455 | 6.15 | 0.00 | 40.21 | 3.79 |
876 | 886 | 1.542472 | TGTAGATCGACAACGGAAGCA | 59.458 | 47.619 | 6.15 | 0.00 | 40.21 | 3.91 |
877 | 887 | 2.273370 | TGTAGATCGACAACGGAAGC | 57.727 | 50.000 | 6.15 | 0.00 | 40.21 | 3.86 |
878 | 888 | 3.179830 | CCTTGTAGATCGACAACGGAAG | 58.820 | 50.000 | 21.52 | 12.05 | 40.21 | 3.46 |
879 | 889 | 2.094390 | CCCTTGTAGATCGACAACGGAA | 60.094 | 50.000 | 23.12 | 4.49 | 37.56 | 4.30 |
920 | 930 | 1.153597 | TGATGCATAGCAACGCGAGG | 61.154 | 55.000 | 15.93 | 5.03 | 43.62 | 4.63 |
921 | 931 | 0.042708 | GTGATGCATAGCAACGCGAG | 60.043 | 55.000 | 15.93 | 5.94 | 43.62 | 5.03 |
922 | 932 | 1.428370 | GGTGATGCATAGCAACGCGA | 61.428 | 55.000 | 15.93 | 0.00 | 43.62 | 5.87 |
923 | 933 | 1.010797 | GGTGATGCATAGCAACGCG | 60.011 | 57.895 | 3.53 | 3.53 | 43.62 | 6.01 |
924 | 934 | 0.664761 | ATGGTGATGCATAGCAACGC | 59.335 | 50.000 | 0.00 | 4.51 | 43.62 | 4.84 |
925 | 935 | 1.941975 | TCATGGTGATGCATAGCAACG | 59.058 | 47.619 | 0.00 | 1.35 | 43.62 | 4.10 |
926 | 936 | 3.819337 | AGATCATGGTGATGCATAGCAAC | 59.181 | 43.478 | 0.00 | 0.00 | 43.62 | 4.17 |
927 | 937 | 4.094830 | AGATCATGGTGATGCATAGCAA | 57.905 | 40.909 | 0.00 | 0.00 | 43.62 | 3.91 |
928 | 938 | 3.782656 | AGATCATGGTGATGCATAGCA | 57.217 | 42.857 | 0.00 | 4.86 | 44.86 | 3.49 |
929 | 939 | 3.819337 | ACAAGATCATGGTGATGCATAGC | 59.181 | 43.478 | 0.00 | 0.00 | 37.20 | 2.97 |
930 | 940 | 4.820173 | ACACAAGATCATGGTGATGCATAG | 59.180 | 41.667 | 15.51 | 0.00 | 37.20 | 2.23 |
931 | 941 | 4.577283 | CACACAAGATCATGGTGATGCATA | 59.423 | 41.667 | 15.51 | 0.00 | 37.20 | 3.14 |
932 | 942 | 3.380320 | CACACAAGATCATGGTGATGCAT | 59.620 | 43.478 | 15.51 | 0.00 | 37.20 | 3.96 |
933 | 943 | 2.750712 | CACACAAGATCATGGTGATGCA | 59.249 | 45.455 | 15.51 | 0.00 | 37.20 | 3.96 |
934 | 944 | 2.751259 | ACACACAAGATCATGGTGATGC | 59.249 | 45.455 | 19.56 | 0.00 | 37.20 | 3.91 |
935 | 945 | 3.427098 | GCACACACAAGATCATGGTGATG | 60.427 | 47.826 | 19.56 | 15.44 | 37.20 | 3.07 |
936 | 946 | 2.751259 | GCACACACAAGATCATGGTGAT | 59.249 | 45.455 | 19.56 | 0.00 | 40.34 | 3.06 |
937 | 947 | 2.153645 | GCACACACAAGATCATGGTGA | 58.846 | 47.619 | 19.56 | 0.00 | 36.42 | 4.02 |
938 | 948 | 1.135888 | CGCACACACAAGATCATGGTG | 60.136 | 52.381 | 14.17 | 14.17 | 38.47 | 4.17 |
939 | 949 | 1.159285 | CGCACACACAAGATCATGGT | 58.841 | 50.000 | 2.59 | 0.00 | 0.00 | 3.55 |
940 | 950 | 1.159285 | ACGCACACACAAGATCATGG | 58.841 | 50.000 | 2.59 | 0.00 | 0.00 | 3.66 |
941 | 951 | 2.349580 | CCTACGCACACACAAGATCATG | 59.650 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
942 | 952 | 2.233676 | TCCTACGCACACACAAGATCAT | 59.766 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
943 | 953 | 1.616374 | TCCTACGCACACACAAGATCA | 59.384 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
944 | 954 | 2.363788 | TCCTACGCACACACAAGATC | 57.636 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
945 | 955 | 2.831685 | TTCCTACGCACACACAAGAT | 57.168 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
946 | 956 | 2.605837 | TTTCCTACGCACACACAAGA | 57.394 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
947 | 957 | 3.896648 | AATTTCCTACGCACACACAAG | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
948 | 958 | 4.640789 | AAAATTTCCTACGCACACACAA | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 3.33 |
949 | 959 | 4.640789 | AAAAATTTCCTACGCACACACA | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 3.72 |
968 | 978 | 8.248945 | TGTTGGGTTTCGTAGTAATTTCAAAAA | 58.751 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
969 | 979 | 7.701501 | GTGTTGGGTTTCGTAGTAATTTCAAAA | 59.298 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
970 | 980 | 7.194962 | GTGTTGGGTTTCGTAGTAATTTCAAA | 58.805 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
971 | 981 | 6.511444 | CGTGTTGGGTTTCGTAGTAATTTCAA | 60.511 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
972 | 982 | 5.050227 | CGTGTTGGGTTTCGTAGTAATTTCA | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
973 | 983 | 5.177327 | TCGTGTTGGGTTTCGTAGTAATTTC | 59.823 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
974 | 984 | 5.055812 | TCGTGTTGGGTTTCGTAGTAATTT | 58.944 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
975 | 985 | 4.630111 | TCGTGTTGGGTTTCGTAGTAATT | 58.370 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
976 | 986 | 4.255833 | TCGTGTTGGGTTTCGTAGTAAT | 57.744 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
977 | 987 | 3.724508 | TCGTGTTGGGTTTCGTAGTAA | 57.275 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
978 | 988 | 3.317711 | TCTTCGTGTTGGGTTTCGTAGTA | 59.682 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
979 | 989 | 2.101249 | TCTTCGTGTTGGGTTTCGTAGT | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
980 | 990 | 2.746269 | TCTTCGTGTTGGGTTTCGTAG | 58.254 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
981 | 991 | 2.886862 | TCTTCGTGTTGGGTTTCGTA | 57.113 | 45.000 | 0.00 | 0.00 | 0.00 | 3.43 |
982 | 992 | 1.871039 | CATCTTCGTGTTGGGTTTCGT | 59.129 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
983 | 993 | 1.196808 | CCATCTTCGTGTTGGGTTTCG | 59.803 | 52.381 | 0.00 | 0.00 | 33.08 | 3.46 |
984 | 994 | 1.068541 | GCCATCTTCGTGTTGGGTTTC | 60.069 | 52.381 | 9.19 | 0.00 | 36.33 | 2.78 |
985 | 995 | 0.958822 | GCCATCTTCGTGTTGGGTTT | 59.041 | 50.000 | 9.19 | 0.00 | 36.33 | 3.27 |
986 | 996 | 1.234615 | CGCCATCTTCGTGTTGGGTT | 61.235 | 55.000 | 9.19 | 0.00 | 36.33 | 4.11 |
987 | 997 | 1.671054 | CGCCATCTTCGTGTTGGGT | 60.671 | 57.895 | 9.19 | 0.00 | 36.33 | 4.51 |
988 | 998 | 1.375396 | TCGCCATCTTCGTGTTGGG | 60.375 | 57.895 | 9.19 | 0.00 | 36.33 | 4.12 |
989 | 999 | 0.670546 | AGTCGCCATCTTCGTGTTGG | 60.671 | 55.000 | 4.66 | 4.66 | 38.30 | 3.77 |
990 | 1000 | 1.136252 | CAAGTCGCCATCTTCGTGTTG | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
991 | 1001 | 1.148310 | CAAGTCGCCATCTTCGTGTT | 58.852 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
992 | 1002 | 1.291877 | GCAAGTCGCCATCTTCGTGT | 61.292 | 55.000 | 0.00 | 0.00 | 32.94 | 4.49 |
993 | 1003 | 1.291184 | TGCAAGTCGCCATCTTCGTG | 61.291 | 55.000 | 0.00 | 0.00 | 41.33 | 4.35 |
1339 | 1457 | 4.785453 | GGCCTGCTCCGTCCTTGG | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 3.61 |
1446 | 1677 | 3.071023 | TCATCAAAGGAGTCGTCCAGTTT | 59.929 | 43.478 | 0.00 | 0.00 | 46.80 | 2.66 |
1506 | 1737 | 4.588951 | CCTTTTTAAAGCCTCCTTGACCTT | 59.411 | 41.667 | 0.00 | 0.00 | 34.69 | 3.50 |
1772 | 2107 | 3.052455 | TCTTAAGCGGTGCTCAATGAA | 57.948 | 42.857 | 0.00 | 0.00 | 38.25 | 2.57 |
1972 | 2307 | 2.952310 | GACTTTGTGTTTCTCCAAGGCT | 59.048 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
2023 | 2358 | 1.833630 | CCAGAAGCTAGGGATGTGACA | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
2024 | 2359 | 1.834263 | ACCAGAAGCTAGGGATGTGAC | 59.166 | 52.381 | 5.33 | 0.00 | 0.00 | 3.67 |
2025 | 2360 | 2.254152 | ACCAGAAGCTAGGGATGTGA | 57.746 | 50.000 | 5.33 | 0.00 | 0.00 | 3.58 |
2026 | 2361 | 4.384056 | CATTACCAGAAGCTAGGGATGTG | 58.616 | 47.826 | 5.33 | 0.00 | 0.00 | 3.21 |
2027 | 2362 | 3.181450 | GCATTACCAGAAGCTAGGGATGT | 60.181 | 47.826 | 5.33 | 0.00 | 0.00 | 3.06 |
2028 | 2363 | 3.072184 | AGCATTACCAGAAGCTAGGGATG | 59.928 | 47.826 | 5.33 | 8.80 | 35.19 | 3.51 |
2029 | 2364 | 3.321950 | AGCATTACCAGAAGCTAGGGAT | 58.678 | 45.455 | 5.33 | 0.00 | 35.19 | 3.85 |
2030 | 2365 | 2.700897 | GAGCATTACCAGAAGCTAGGGA | 59.299 | 50.000 | 5.33 | 0.00 | 37.48 | 4.20 |
2031 | 2366 | 2.703007 | AGAGCATTACCAGAAGCTAGGG | 59.297 | 50.000 | 4.97 | 1.22 | 37.48 | 3.53 |
2032 | 2367 | 3.386078 | TCAGAGCATTACCAGAAGCTAGG | 59.614 | 47.826 | 0.00 | 0.00 | 37.48 | 3.02 |
2033 | 2368 | 4.619973 | CTCAGAGCATTACCAGAAGCTAG | 58.380 | 47.826 | 0.00 | 0.00 | 37.48 | 3.42 |
2034 | 2369 | 3.181471 | GCTCAGAGCATTACCAGAAGCTA | 60.181 | 47.826 | 18.17 | 0.00 | 41.89 | 3.32 |
2035 | 2370 | 2.419851 | GCTCAGAGCATTACCAGAAGCT | 60.420 | 50.000 | 18.17 | 0.00 | 41.89 | 3.74 |
2036 | 2371 | 1.939255 | GCTCAGAGCATTACCAGAAGC | 59.061 | 52.381 | 18.17 | 0.00 | 41.89 | 3.86 |
2037 | 2372 | 3.540314 | AGCTCAGAGCATTACCAGAAG | 57.460 | 47.619 | 24.64 | 0.00 | 45.56 | 2.85 |
2038 | 2373 | 3.181471 | GCTAGCTCAGAGCATTACCAGAA | 60.181 | 47.826 | 24.64 | 0.00 | 45.56 | 3.02 |
2039 | 2374 | 2.363680 | GCTAGCTCAGAGCATTACCAGA | 59.636 | 50.000 | 24.64 | 0.00 | 45.56 | 3.86 |
2040 | 2375 | 2.364970 | AGCTAGCTCAGAGCATTACCAG | 59.635 | 50.000 | 24.64 | 11.41 | 45.56 | 4.00 |
2041 | 2376 | 2.392662 | AGCTAGCTCAGAGCATTACCA | 58.607 | 47.619 | 24.64 | 1.45 | 45.56 | 3.25 |
2042 | 2377 | 3.572255 | ACTAGCTAGCTCAGAGCATTACC | 59.428 | 47.826 | 23.26 | 7.69 | 45.56 | 2.85 |
2043 | 2378 | 4.277174 | TGACTAGCTAGCTCAGAGCATTAC | 59.723 | 45.833 | 23.26 | 10.50 | 45.56 | 1.89 |
2044 | 2379 | 4.464947 | TGACTAGCTAGCTCAGAGCATTA | 58.535 | 43.478 | 23.26 | 8.12 | 45.56 | 1.90 |
2045 | 2380 | 3.295093 | TGACTAGCTAGCTCAGAGCATT | 58.705 | 45.455 | 23.26 | 7.30 | 45.56 | 3.56 |
2046 | 2381 | 2.942804 | TGACTAGCTAGCTCAGAGCAT | 58.057 | 47.619 | 23.26 | 11.78 | 45.56 | 3.79 |
2047 | 2382 | 2.426842 | TGACTAGCTAGCTCAGAGCA | 57.573 | 50.000 | 23.26 | 12.39 | 45.56 | 4.26 |
2048 | 2383 | 2.622942 | ACATGACTAGCTAGCTCAGAGC | 59.377 | 50.000 | 23.26 | 15.25 | 42.84 | 4.09 |
2049 | 2384 | 3.631686 | ACACATGACTAGCTAGCTCAGAG | 59.368 | 47.826 | 23.26 | 16.05 | 0.00 | 3.35 |
2050 | 2385 | 3.625853 | ACACATGACTAGCTAGCTCAGA | 58.374 | 45.455 | 23.26 | 2.40 | 0.00 | 3.27 |
2051 | 2386 | 4.111198 | CAACACATGACTAGCTAGCTCAG | 58.889 | 47.826 | 23.26 | 18.29 | 0.00 | 3.35 |
2052 | 2387 | 3.677148 | GCAACACATGACTAGCTAGCTCA | 60.677 | 47.826 | 23.26 | 20.86 | 0.00 | 4.26 |
2053 | 2388 | 2.863137 | GCAACACATGACTAGCTAGCTC | 59.137 | 50.000 | 23.26 | 16.40 | 0.00 | 4.09 |
2054 | 2389 | 2.234661 | TGCAACACATGACTAGCTAGCT | 59.765 | 45.455 | 23.12 | 23.12 | 0.00 | 3.32 |
2055 | 2390 | 2.621338 | TGCAACACATGACTAGCTAGC | 58.379 | 47.619 | 20.91 | 6.62 | 0.00 | 3.42 |
2056 | 2391 | 4.436332 | TGATGCAACACATGACTAGCTAG | 58.564 | 43.478 | 19.44 | 19.44 | 39.84 | 3.42 |
2057 | 2392 | 4.470334 | TGATGCAACACATGACTAGCTA | 57.530 | 40.909 | 0.00 | 0.00 | 39.84 | 3.32 |
2058 | 2393 | 3.339253 | TGATGCAACACATGACTAGCT | 57.661 | 42.857 | 0.00 | 0.00 | 39.84 | 3.32 |
2059 | 2394 | 3.376234 | ACATGATGCAACACATGACTAGC | 59.624 | 43.478 | 26.65 | 0.00 | 44.28 | 3.42 |
2060 | 2395 | 5.556355 | AACATGATGCAACACATGACTAG | 57.444 | 39.130 | 26.65 | 10.01 | 44.28 | 2.57 |
2061 | 2396 | 5.963176 | AAACATGATGCAACACATGACTA | 57.037 | 34.783 | 26.65 | 0.00 | 44.28 | 2.59 |
2062 | 2397 | 4.859304 | AAACATGATGCAACACATGACT | 57.141 | 36.364 | 26.65 | 16.00 | 44.28 | 3.41 |
2063 | 2398 | 7.585286 | ATTTAAACATGATGCAACACATGAC | 57.415 | 32.000 | 26.65 | 1.44 | 44.28 | 3.06 |
2064 | 2399 | 8.604640 | AAATTTAAACATGATGCAACACATGA | 57.395 | 26.923 | 26.65 | 12.56 | 44.28 | 3.07 |
2065 | 2400 | 9.108449 | CAAAATTTAAACATGATGCAACACATG | 57.892 | 29.630 | 21.65 | 21.65 | 46.11 | 3.21 |
2066 | 2401 | 7.804129 | GCAAAATTTAAACATGATGCAACACAT | 59.196 | 29.630 | 0.00 | 0.00 | 43.54 | 3.21 |
2067 | 2402 | 7.130917 | GCAAAATTTAAACATGATGCAACACA | 58.869 | 30.769 | 0.00 | 0.00 | 33.00 | 3.72 |
2068 | 2403 | 6.578172 | GGCAAAATTTAAACATGATGCAACAC | 59.422 | 34.615 | 0.00 | 0.00 | 34.37 | 3.32 |
2069 | 2404 | 6.485984 | AGGCAAAATTTAAACATGATGCAACA | 59.514 | 30.769 | 0.00 | 0.00 | 34.37 | 3.33 |
2070 | 2405 | 6.901265 | AGGCAAAATTTAAACATGATGCAAC | 58.099 | 32.000 | 0.00 | 0.00 | 34.37 | 4.17 |
2071 | 2406 | 8.613060 | TTAGGCAAAATTTAAACATGATGCAA | 57.387 | 26.923 | 0.00 | 0.00 | 34.37 | 4.08 |
2072 | 2407 | 8.613060 | TTTAGGCAAAATTTAAACATGATGCA | 57.387 | 26.923 | 0.00 | 0.00 | 34.37 | 3.96 |
2086 | 2421 | 6.788218 | TCCCCATTTCAATTTTAGGCAAAAT | 58.212 | 32.000 | 0.00 | 0.00 | 44.45 | 1.82 |
2087 | 2422 | 6.192970 | TCCCCATTTCAATTTTAGGCAAAA | 57.807 | 33.333 | 0.00 | 0.00 | 38.00 | 2.44 |
2088 | 2423 | 5.832539 | TCCCCATTTCAATTTTAGGCAAA | 57.167 | 34.783 | 0.00 | 0.00 | 0.00 | 3.68 |
2089 | 2424 | 5.250313 | ACATCCCCATTTCAATTTTAGGCAA | 59.750 | 36.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2090 | 2425 | 4.782156 | ACATCCCCATTTCAATTTTAGGCA | 59.218 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
2091 | 2426 | 5.357742 | ACATCCCCATTTCAATTTTAGGC | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
2092 | 2427 | 6.945218 | TGAACATCCCCATTTCAATTTTAGG | 58.055 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2093 | 2428 | 8.720562 | GTTTGAACATCCCCATTTCAATTTTAG | 58.279 | 33.333 | 0.00 | 0.00 | 38.65 | 1.85 |
2094 | 2429 | 7.663493 | GGTTTGAACATCCCCATTTCAATTTTA | 59.337 | 33.333 | 0.00 | 0.00 | 38.65 | 1.52 |
2095 | 2430 | 6.489700 | GGTTTGAACATCCCCATTTCAATTTT | 59.510 | 34.615 | 0.00 | 0.00 | 38.65 | 1.82 |
2096 | 2431 | 6.003326 | GGTTTGAACATCCCCATTTCAATTT | 58.997 | 36.000 | 0.00 | 0.00 | 38.65 | 1.82 |
2097 | 2432 | 5.514659 | GGGTTTGAACATCCCCATTTCAATT | 60.515 | 40.000 | 0.00 | 0.00 | 38.65 | 2.32 |
2098 | 2433 | 4.019411 | GGGTTTGAACATCCCCATTTCAAT | 60.019 | 41.667 | 0.00 | 0.00 | 38.65 | 2.57 |
2099 | 2434 | 3.326297 | GGGTTTGAACATCCCCATTTCAA | 59.674 | 43.478 | 0.00 | 0.00 | 37.44 | 2.69 |
2100 | 2435 | 2.903135 | GGGTTTGAACATCCCCATTTCA | 59.097 | 45.455 | 0.00 | 0.00 | 37.09 | 2.69 |
2101 | 2436 | 3.173151 | AGGGTTTGAACATCCCCATTTC | 58.827 | 45.455 | 10.47 | 0.00 | 41.95 | 2.17 |
2102 | 2437 | 3.274281 | AGGGTTTGAACATCCCCATTT | 57.726 | 42.857 | 10.47 | 0.00 | 41.95 | 2.32 |
2103 | 2438 | 3.881713 | GCTAGGGTTTGAACATCCCCATT | 60.882 | 47.826 | 10.47 | 0.00 | 41.95 | 3.16 |
2104 | 2439 | 2.358195 | GCTAGGGTTTGAACATCCCCAT | 60.358 | 50.000 | 10.47 | 0.00 | 41.95 | 4.00 |
2105 | 2440 | 1.005450 | GCTAGGGTTTGAACATCCCCA | 59.995 | 52.381 | 10.47 | 0.12 | 41.95 | 4.96 |
2106 | 2441 | 1.005450 | TGCTAGGGTTTGAACATCCCC | 59.995 | 52.381 | 10.30 | 6.59 | 41.95 | 4.81 |
2107 | 2442 | 2.507407 | TGCTAGGGTTTGAACATCCC | 57.493 | 50.000 | 0.00 | 0.00 | 41.36 | 3.85 |
2108 | 2443 | 6.524101 | TTTAATGCTAGGGTTTGAACATCC | 57.476 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
2109 | 2444 | 7.771183 | TGATTTAATGCTAGGGTTTGAACATC | 58.229 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2110 | 2445 | 7.716799 | TGATTTAATGCTAGGGTTTGAACAT | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2111 | 2446 | 7.232534 | AGTTGATTTAATGCTAGGGTTTGAACA | 59.767 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2112 | 2447 | 7.602753 | AGTTGATTTAATGCTAGGGTTTGAAC | 58.397 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2113 | 2448 | 7.450014 | TGAGTTGATTTAATGCTAGGGTTTGAA | 59.550 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2114 | 2449 | 6.945435 | TGAGTTGATTTAATGCTAGGGTTTGA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
2115 | 2450 | 7.156876 | TGAGTTGATTTAATGCTAGGGTTTG | 57.843 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2116 | 2451 | 7.451566 | AGTTGAGTTGATTTAATGCTAGGGTTT | 59.548 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
2117 | 2452 | 6.948309 | AGTTGAGTTGATTTAATGCTAGGGTT | 59.052 | 34.615 | 0.00 | 0.00 | 0.00 | 4.11 |
2118 | 2453 | 6.485171 | AGTTGAGTTGATTTAATGCTAGGGT | 58.515 | 36.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2119 | 2454 | 7.227512 | CCTAGTTGAGTTGATTTAATGCTAGGG | 59.772 | 40.741 | 0.00 | 0.00 | 38.58 | 3.53 |
2120 | 2455 | 7.227512 | CCCTAGTTGAGTTGATTTAATGCTAGG | 59.772 | 40.741 | 0.00 | 0.00 | 40.65 | 3.02 |
2121 | 2456 | 7.770897 | ACCCTAGTTGAGTTGATTTAATGCTAG | 59.229 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
2122 | 2457 | 7.630082 | ACCCTAGTTGAGTTGATTTAATGCTA | 58.370 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
2123 | 2458 | 6.485171 | ACCCTAGTTGAGTTGATTTAATGCT | 58.515 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2124 | 2459 | 6.759497 | ACCCTAGTTGAGTTGATTTAATGC | 57.241 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
2125 | 2460 | 9.449719 | ACTTACCCTAGTTGAGTTGATTTAATG | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
2129 | 2464 | 9.856162 | TTTAACTTACCCTAGTTGAGTTGATTT | 57.144 | 29.630 | 8.31 | 0.00 | 38.72 | 2.17 |
2130 | 2465 | 9.856162 | TTTTAACTTACCCTAGTTGAGTTGATT | 57.144 | 29.630 | 8.31 | 0.00 | 38.72 | 2.57 |
2132 | 2467 | 9.498176 | GATTTTAACTTACCCTAGTTGAGTTGA | 57.502 | 33.333 | 8.31 | 0.09 | 38.72 | 3.18 |
2133 | 2468 | 9.503399 | AGATTTTAACTTACCCTAGTTGAGTTG | 57.497 | 33.333 | 8.31 | 0.00 | 38.72 | 3.16 |
2153 | 2488 | 8.629158 | GCCTTTTGGGTTTATTGAAAAGATTTT | 58.371 | 29.630 | 0.00 | 0.00 | 37.52 | 1.82 |
2155 | 2490 | 6.714810 | GGCCTTTTGGGTTTATTGAAAAGATT | 59.285 | 34.615 | 0.00 | 0.00 | 37.52 | 2.40 |
2156 | 2491 | 6.237901 | GGCCTTTTGGGTTTATTGAAAAGAT | 58.762 | 36.000 | 0.00 | 0.00 | 37.52 | 2.40 |
2157 | 2492 | 5.455469 | GGGCCTTTTGGGTTTATTGAAAAGA | 60.455 | 40.000 | 0.84 | 0.00 | 37.52 | 2.52 |
2159 | 2494 | 4.413851 | AGGGCCTTTTGGGTTTATTGAAAA | 59.586 | 37.500 | 0.00 | 0.00 | 40.82 | 2.29 |
2160 | 2495 | 3.977326 | AGGGCCTTTTGGGTTTATTGAAA | 59.023 | 39.130 | 0.00 | 0.00 | 40.82 | 2.69 |
2162 | 2497 | 3.268034 | AGGGCCTTTTGGGTTTATTGA | 57.732 | 42.857 | 0.00 | 0.00 | 40.82 | 2.57 |
2163 | 2498 | 4.775253 | TCTTAGGGCCTTTTGGGTTTATTG | 59.225 | 41.667 | 13.45 | 0.00 | 40.82 | 1.90 |
2164 | 2499 | 5.018374 | TCTTAGGGCCTTTTGGGTTTATT | 57.982 | 39.130 | 13.45 | 0.00 | 40.82 | 1.40 |
2165 | 2500 | 4.685513 | TCTTAGGGCCTTTTGGGTTTAT | 57.314 | 40.909 | 13.45 | 0.00 | 40.82 | 1.40 |
2166 | 2501 | 4.472690 | TTCTTAGGGCCTTTTGGGTTTA | 57.527 | 40.909 | 13.45 | 0.00 | 40.82 | 2.01 |
2167 | 2502 | 3.338110 | TTCTTAGGGCCTTTTGGGTTT | 57.662 | 42.857 | 13.45 | 0.00 | 40.82 | 3.27 |
2168 | 2503 | 3.338110 | TTTCTTAGGGCCTTTTGGGTT | 57.662 | 42.857 | 13.45 | 0.00 | 40.82 | 4.11 |
2169 | 2504 | 3.239449 | CTTTTCTTAGGGCCTTTTGGGT | 58.761 | 45.455 | 13.45 | 0.00 | 40.82 | 4.51 |
2171 | 2506 | 4.343814 | TGAACTTTTCTTAGGGCCTTTTGG | 59.656 | 41.667 | 13.45 | 0.00 | 44.18 | 3.28 |
2173 | 2508 | 5.838521 | TCATGAACTTTTCTTAGGGCCTTTT | 59.161 | 36.000 | 13.45 | 0.00 | 0.00 | 2.27 |
2174 | 2509 | 5.393866 | TCATGAACTTTTCTTAGGGCCTTT | 58.606 | 37.500 | 13.45 | 0.00 | 0.00 | 3.11 |
2175 | 2510 | 4.998051 | TCATGAACTTTTCTTAGGGCCTT | 58.002 | 39.130 | 13.45 | 0.00 | 0.00 | 4.35 |
2176 | 2511 | 4.657814 | TCATGAACTTTTCTTAGGGCCT | 57.342 | 40.909 | 12.58 | 12.58 | 0.00 | 5.19 |
2177 | 2512 | 5.921962 | AATCATGAACTTTTCTTAGGGCC | 57.078 | 39.130 | 0.00 | 0.00 | 0.00 | 5.80 |
2178 | 2513 | 7.031975 | CAGAAATCATGAACTTTTCTTAGGGC | 58.968 | 38.462 | 16.58 | 0.00 | 37.55 | 5.19 |
2179 | 2514 | 7.177392 | ACCAGAAATCATGAACTTTTCTTAGGG | 59.823 | 37.037 | 20.21 | 18.32 | 37.55 | 3.53 |
2180 | 2515 | 8.115490 | ACCAGAAATCATGAACTTTTCTTAGG | 57.885 | 34.615 | 16.58 | 16.94 | 37.55 | 2.69 |
2184 | 2519 | 8.579863 | CCTTAACCAGAAATCATGAACTTTTCT | 58.420 | 33.333 | 14.35 | 14.35 | 39.61 | 2.52 |
2185 | 2520 | 8.360390 | ACCTTAACCAGAAATCATGAACTTTTC | 58.640 | 33.333 | 10.89 | 10.89 | 0.00 | 2.29 |
2187 | 2522 | 7.255942 | CCACCTTAACCAGAAATCATGAACTTT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
2188 | 2523 | 6.209391 | CCACCTTAACCAGAAATCATGAACTT | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2190 | 2525 | 5.710099 | TCCACCTTAACCAGAAATCATGAAC | 59.290 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2191 | 2526 | 5.886609 | TCCACCTTAACCAGAAATCATGAA | 58.113 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2192 | 2527 | 5.512942 | TCCACCTTAACCAGAAATCATGA | 57.487 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
2193 | 2528 | 6.389906 | GTTTCCACCTTAACCAGAAATCATG | 58.610 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2194 | 2529 | 5.480422 | GGTTTCCACCTTAACCAGAAATCAT | 59.520 | 40.000 | 0.00 | 0.00 | 42.67 | 2.45 |
2196 | 2531 | 5.386958 | GGTTTCCACCTTAACCAGAAATC | 57.613 | 43.478 | 0.00 | 0.00 | 42.67 | 2.17 |
2209 | 2544 | 1.408969 | TTTTGGCAGAGGTTTCCACC | 58.591 | 50.000 | 0.00 | 0.00 | 44.67 | 4.61 |
2210 | 2545 | 3.069443 | TCATTTTTGGCAGAGGTTTCCAC | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
2211 | 2546 | 3.303938 | TCATTTTTGGCAGAGGTTTCCA | 58.696 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
2212 | 2547 | 4.021192 | TCATCATTTTTGGCAGAGGTTTCC | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
2213 | 2548 | 5.138125 | TCATCATTTTTGGCAGAGGTTTC | 57.862 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
2214 | 2549 | 5.549742 | TTCATCATTTTTGGCAGAGGTTT | 57.450 | 34.783 | 0.00 | 0.00 | 0.00 | 3.27 |
2215 | 2550 | 5.750352 | ATTCATCATTTTTGGCAGAGGTT | 57.250 | 34.783 | 0.00 | 0.00 | 0.00 | 3.50 |
2216 | 2551 | 8.716674 | ATATATTCATCATTTTTGGCAGAGGT | 57.283 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
2217 | 2552 | 8.248945 | GGATATATTCATCATTTTTGGCAGAGG | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
2218 | 2553 | 9.021807 | AGGATATATTCATCATTTTTGGCAGAG | 57.978 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
2219 | 2554 | 8.945195 | AGGATATATTCATCATTTTTGGCAGA | 57.055 | 30.769 | 0.00 | 0.00 | 0.00 | 4.26 |
2240 | 2575 | 8.879227 | TCAAAAATCCAAAAATGACCTAAGGAT | 58.121 | 29.630 | 0.00 | 0.00 | 36.02 | 3.24 |
2242 | 2577 | 8.900983 | TTCAAAAATCCAAAAATGACCTAAGG | 57.099 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
2273 | 2609 | 9.902684 | AAATGCCCAAATTCAAATACAATATGA | 57.097 | 25.926 | 0.00 | 0.00 | 0.00 | 2.15 |
2319 | 2655 | 9.504708 | TCAATTTCCAACATTTATTTGAGCATT | 57.495 | 25.926 | 0.00 | 0.00 | 0.00 | 3.56 |
2320 | 2656 | 9.675464 | ATCAATTTCCAACATTTATTTGAGCAT | 57.325 | 25.926 | 0.00 | 0.00 | 0.00 | 3.79 |
2326 | 2662 | 9.394767 | GCCCTTATCAATTTCCAACATTTATTT | 57.605 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2327 | 2663 | 7.992608 | GGCCCTTATCAATTTCCAACATTTATT | 59.007 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2328 | 2664 | 7.127032 | TGGCCCTTATCAATTTCCAACATTTAT | 59.873 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2329 | 2665 | 6.441924 | TGGCCCTTATCAATTTCCAACATTTA | 59.558 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2330 | 2666 | 5.250313 | TGGCCCTTATCAATTTCCAACATTT | 59.750 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2331 | 2667 | 4.782156 | TGGCCCTTATCAATTTCCAACATT | 59.218 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
2332 | 2668 | 4.162131 | GTGGCCCTTATCAATTTCCAACAT | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
2333 | 2669 | 3.513515 | GTGGCCCTTATCAATTTCCAACA | 59.486 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
2334 | 2670 | 3.769300 | AGTGGCCCTTATCAATTTCCAAC | 59.231 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
2335 | 2671 | 3.768757 | CAGTGGCCCTTATCAATTTCCAA | 59.231 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2336 | 2672 | 3.364549 | CAGTGGCCCTTATCAATTTCCA | 58.635 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2337 | 2673 | 2.695147 | CCAGTGGCCCTTATCAATTTCC | 59.305 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2338 | 2674 | 3.631250 | TCCAGTGGCCCTTATCAATTTC | 58.369 | 45.455 | 3.51 | 0.00 | 0.00 | 2.17 |
2339 | 2675 | 3.756082 | TCCAGTGGCCCTTATCAATTT | 57.244 | 42.857 | 3.51 | 0.00 | 0.00 | 1.82 |
2340 | 2676 | 3.756082 | TTCCAGTGGCCCTTATCAATT | 57.244 | 42.857 | 3.51 | 0.00 | 0.00 | 2.32 |
2341 | 2677 | 3.979501 | ATTCCAGTGGCCCTTATCAAT | 57.020 | 42.857 | 3.51 | 0.00 | 0.00 | 2.57 |
2342 | 2678 | 4.871871 | TTATTCCAGTGGCCCTTATCAA | 57.128 | 40.909 | 3.51 | 0.00 | 0.00 | 2.57 |
2343 | 2679 | 5.103728 | TGAATTATTCCAGTGGCCCTTATCA | 60.104 | 40.000 | 3.51 | 2.43 | 0.00 | 2.15 |
2344 | 2680 | 5.385198 | TGAATTATTCCAGTGGCCCTTATC | 58.615 | 41.667 | 3.51 | 0.00 | 0.00 | 1.75 |
2345 | 2681 | 5.388654 | CTGAATTATTCCAGTGGCCCTTAT | 58.611 | 41.667 | 3.51 | 0.00 | 0.00 | 1.73 |
2346 | 2682 | 4.792068 | CTGAATTATTCCAGTGGCCCTTA | 58.208 | 43.478 | 3.51 | 0.00 | 0.00 | 2.69 |
2347 | 2683 | 3.635591 | CTGAATTATTCCAGTGGCCCTT | 58.364 | 45.455 | 3.51 | 0.00 | 0.00 | 3.95 |
2348 | 2684 | 3.303351 | CTGAATTATTCCAGTGGCCCT | 57.697 | 47.619 | 3.51 | 0.00 | 0.00 | 5.19 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.