Multiple sequence alignment - TraesCS1A01G145900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G145900 chr1A 100.000 2375 0 0 1 2375 252320626 252323000 0.000000e+00 4386.0
1 TraesCS1A01G145900 chr1A 100.000 59 0 0 599 657 494741289 494741347 2.500000e-20 110.0
2 TraesCS1A01G145900 chr1A 100.000 29 0 0 923 951 74304007 74304035 1.000000e-03 54.7
3 TraesCS1A01G145900 chr1D 88.520 1446 78 28 985 2375 199841068 199842480 0.000000e+00 1670.0
4 TraesCS1A01G145900 chr1D 92.537 603 38 4 1 601 492363972 492363375 0.000000e+00 857.0
5 TraesCS1A01G145900 chr1D 93.846 65 1 1 1394 1458 65902509 65902448 6.990000e-16 95.3
6 TraesCS1A01G145900 chr1D 89.610 77 2 4 1397 1470 65902444 65902517 2.510000e-15 93.5
7 TraesCS1A01G145900 chr1D 91.304 69 3 2 1400 1465 437506586 437506518 9.040000e-15 91.6
8 TraesCS1A01G145900 chr2A 97.671 601 14 0 1 601 6057545 6056945 0.000000e+00 1033.0
9 TraesCS1A01G145900 chr2A 97.504 601 15 0 1 601 6113451 6112851 0.000000e+00 1027.0
10 TraesCS1A01G145900 chr2A 97.171 601 17 0 1 601 6022125 6021525 0.000000e+00 1016.0
11 TraesCS1A01G145900 chr2A 97.171 601 17 0 1 601 6165152 6164552 0.000000e+00 1016.0
12 TraesCS1A01G145900 chr2A 95.578 294 13 0 658 951 6164553 6164260 2.760000e-129 472.0
13 TraesCS1A01G145900 chr2A 95.533 291 13 0 661 951 6021523 6021233 1.290000e-127 466.0
14 TraesCS1A01G145900 chr2A 95.238 294 14 0 658 951 6112852 6112559 1.290000e-127 466.0
15 TraesCS1A01G145900 chr2A 94.898 294 14 1 658 951 6056946 6056654 2.150000e-125 459.0
16 TraesCS1A01G145900 chr6A 97.171 601 17 0 1 601 601220269 601220869 0.000000e+00 1016.0
17 TraesCS1A01G145900 chr6A 96.091 307 10 1 658 964 601220868 601221172 1.270000e-137 499.0
18 TraesCS1A01G145900 chr6A 98.387 62 1 0 599 660 495444817 495444878 2.500000e-20 110.0
19 TraesCS1A01G145900 chr3B 95.175 601 28 1 1 601 765389537 765390136 0.000000e+00 948.0
20 TraesCS1A01G145900 chr3B 92.027 602 44 3 2 601 27910937 27911536 0.000000e+00 843.0
21 TraesCS1A01G145900 chrUn 90.864 602 52 2 1 601 77767911 77768510 0.000000e+00 804.0
22 TraesCS1A01G145900 chr1B 94.961 516 21 5 1726 2238 286610817 286611330 0.000000e+00 804.0
23 TraesCS1A01G145900 chr1B 92.857 448 19 4 957 1403 286610048 286610483 2.570000e-179 638.0
24 TraesCS1A01G145900 chr1B 96.127 284 8 1 1460 1740 286610487 286610770 5.980000e-126 460.0
25 TraesCS1A01G145900 chr1B 98.039 153 3 0 2223 2375 286611344 286611496 1.400000e-67 267.0
26 TraesCS1A01G145900 chr1B 89.474 76 5 3 1400 1474 632033991 632034064 2.510000e-15 93.5
27 TraesCS1A01G145900 chr1B 100.000 31 0 0 921 951 58371828 58371798 9.170000e-05 58.4
28 TraesCS1A01G145900 chr7A 98.413 63 1 0 599 661 693464118 693464180 6.940000e-21 111.0
29 TraesCS1A01G145900 chr7A 96.825 63 2 0 599 661 688417584 688417522 3.230000e-19 106.0
30 TraesCS1A01G145900 chr7A 92.424 66 3 2 1399 1462 83786104 83786039 2.510000e-15 93.5
31 TraesCS1A01G145900 chr7A 100.000 30 0 0 1010 1039 458525410 458525439 3.300000e-04 56.5
32 TraesCS1A01G145900 chr4A 98.387 62 1 0 599 660 698810125 698810186 2.500000e-20 110.0
33 TraesCS1A01G145900 chr4A 98.361 61 1 0 599 659 549170205 549170265 8.980000e-20 108.0
34 TraesCS1A01G145900 chr2D 95.652 69 2 1 1396 1463 537496582 537496650 2.500000e-20 110.0
35 TraesCS1A01G145900 chr2D 96.774 62 0 1 1399 1460 582301429 582301488 4.180000e-18 102.0
36 TraesCS1A01G145900 chr5A 96.875 64 2 0 599 662 617950430 617950367 8.980000e-20 108.0
37 TraesCS1A01G145900 chr3A 98.361 61 1 0 599 659 521313297 521313357 8.980000e-20 108.0
38 TraesCS1A01G145900 chr3A 96.825 63 2 0 599 661 79459868 79459930 3.230000e-19 106.0
39 TraesCS1A01G145900 chr2B 94.286 70 2 1 1392 1461 761990782 761990715 3.230000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G145900 chr1A 252320626 252323000 2374 False 4386.00 4386 100.0000 1 2375 1 chr1A.!!$F2 2374
1 TraesCS1A01G145900 chr1D 199841068 199842480 1412 False 1670.00 1670 88.5200 985 2375 1 chr1D.!!$F2 1390
2 TraesCS1A01G145900 chr1D 492363375 492363972 597 True 857.00 857 92.5370 1 601 1 chr1D.!!$R3 600
3 TraesCS1A01G145900 chr2A 6112559 6113451 892 True 746.50 1027 96.3710 1 951 2 chr2A.!!$R3 950
4 TraesCS1A01G145900 chr2A 6056654 6057545 891 True 746.00 1033 96.2845 1 951 2 chr2A.!!$R2 950
5 TraesCS1A01G145900 chr2A 6164260 6165152 892 True 744.00 1016 96.3745 1 951 2 chr2A.!!$R4 950
6 TraesCS1A01G145900 chr2A 6021233 6022125 892 True 741.00 1016 96.3520 1 951 2 chr2A.!!$R1 950
7 TraesCS1A01G145900 chr6A 601220269 601221172 903 False 757.50 1016 96.6310 1 964 2 chr6A.!!$F2 963
8 TraesCS1A01G145900 chr3B 765389537 765390136 599 False 948.00 948 95.1750 1 601 1 chr3B.!!$F2 600
9 TraesCS1A01G145900 chr3B 27910937 27911536 599 False 843.00 843 92.0270 2 601 1 chr3B.!!$F1 599
10 TraesCS1A01G145900 chrUn 77767911 77768510 599 False 804.00 804 90.8640 1 601 1 chrUn.!!$F1 600
11 TraesCS1A01G145900 chr1B 286610048 286611496 1448 False 542.25 804 95.4960 957 2375 4 chr1B.!!$F2 1418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 996 0.033991 CCTCTCACTCTCCTTCCGGA 60.034 60.0 0.0 0.0 37.82 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1909 2.030363 TGCACAGCTTAAATCAAACGGG 60.03 45.455 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 2.043980 CGTGGCCGGCAACCTAAAT 61.044 57.895 28.30 0.00 0.00 1.40
269 271 9.086336 CATTGTGCGATGGAAAACTATATTTTT 57.914 29.630 0.77 0.77 0.00 1.94
362 366 8.514594 ACAATGTTGTATAATGCATATGTAGCC 58.485 33.333 0.00 0.00 40.16 3.93
373 377 3.947834 GCATATGTAGCCTGGTTTTCAGT 59.052 43.478 4.29 0.00 41.83 3.41
595 599 5.007332 GTGACCGTTAATTTTATGCGGAGAT 59.993 40.000 15.82 0.67 44.57 2.75
599 603 6.708949 ACCGTTAATTTTATGCGGAGATATGT 59.291 34.615 15.82 0.00 44.57 2.29
600 604 7.227910 ACCGTTAATTTTATGCGGAGATATGTT 59.772 33.333 15.82 0.00 44.57 2.71
601 605 8.714179 CCGTTAATTTTATGCGGAGATATGTTA 58.286 33.333 0.00 0.00 44.57 2.41
607 611 8.997621 TTTTATGCGGAGATATGTTATAGGAC 57.002 34.615 0.00 0.00 0.00 3.85
608 612 7.956328 TTATGCGGAGATATGTTATAGGACT 57.044 36.000 0.00 0.00 0.00 3.85
609 613 9.470399 TTTATGCGGAGATATGTTATAGGACTA 57.530 33.333 0.00 0.00 0.00 2.59
610 614 7.956328 ATGCGGAGATATGTTATAGGACTAA 57.044 36.000 0.00 0.00 0.00 2.24
611 615 7.770366 TGCGGAGATATGTTATAGGACTAAA 57.230 36.000 0.00 0.00 0.00 1.85
612 616 7.600065 TGCGGAGATATGTTATAGGACTAAAC 58.400 38.462 0.00 0.00 0.00 2.01
613 617 7.450634 TGCGGAGATATGTTATAGGACTAAACT 59.549 37.037 0.00 0.00 0.00 2.66
614 618 7.755822 GCGGAGATATGTTATAGGACTAAACTG 59.244 40.741 0.00 0.00 0.00 3.16
615 619 9.011095 CGGAGATATGTTATAGGACTAAACTGA 57.989 37.037 0.00 0.00 0.00 3.41
622 626 8.362464 TGTTATAGGACTAAACTGACACATCT 57.638 34.615 0.00 0.00 0.00 2.90
623 627 9.470399 TGTTATAGGACTAAACTGACACATCTA 57.530 33.333 0.00 0.00 0.00 1.98
626 630 8.768501 ATAGGACTAAACTGACACATCTATGA 57.231 34.615 0.00 0.00 0.00 2.15
627 631 7.667575 AGGACTAAACTGACACATCTATGAT 57.332 36.000 0.00 0.00 0.00 2.45
628 632 8.768501 AGGACTAAACTGACACATCTATGATA 57.231 34.615 0.00 0.00 0.00 2.15
629 633 8.855110 AGGACTAAACTGACACATCTATGATAG 58.145 37.037 0.00 0.00 0.00 2.08
630 634 8.634444 GGACTAAACTGACACATCTATGATAGT 58.366 37.037 0.00 0.00 0.00 2.12
636 640 9.823647 AACTGACACATCTATGATAGTTTTAGG 57.176 33.333 0.00 0.00 30.64 2.69
637 641 9.201989 ACTGACACATCTATGATAGTTTTAGGA 57.798 33.333 0.00 0.00 0.00 2.94
638 642 9.469807 CTGACACATCTATGATAGTTTTAGGAC 57.530 37.037 0.00 0.00 0.00 3.85
639 643 9.201989 TGACACATCTATGATAGTTTTAGGACT 57.798 33.333 0.00 0.00 0.00 3.85
641 645 9.823647 ACACATCTATGATAGTTTTAGGACTTG 57.176 33.333 0.00 0.00 0.00 3.16
642 646 9.823647 CACATCTATGATAGTTTTAGGACTTGT 57.176 33.333 0.00 0.00 0.00 3.16
643 647 9.823647 ACATCTATGATAGTTTTAGGACTTGTG 57.176 33.333 0.00 0.00 0.00 3.33
647 651 6.985188 TGATAGTTTTAGGACTTGTGATGC 57.015 37.500 0.00 0.00 0.00 3.91
648 652 6.472016 TGATAGTTTTAGGACTTGTGATGCA 58.528 36.000 0.00 0.00 0.00 3.96
649 653 7.112122 TGATAGTTTTAGGACTTGTGATGCAT 58.888 34.615 0.00 0.00 0.00 3.96
650 654 7.611467 TGATAGTTTTAGGACTTGTGATGCATT 59.389 33.333 0.00 0.00 0.00 3.56
651 655 6.655078 AGTTTTAGGACTTGTGATGCATTT 57.345 33.333 0.00 0.00 0.00 2.32
652 656 7.054491 AGTTTTAGGACTTGTGATGCATTTT 57.946 32.000 0.00 0.00 0.00 1.82
653 657 8.177119 AGTTTTAGGACTTGTGATGCATTTTA 57.823 30.769 0.00 0.00 0.00 1.52
654 658 8.082242 AGTTTTAGGACTTGTGATGCATTTTAC 58.918 33.333 0.00 1.57 0.00 2.01
655 659 7.759489 TTTAGGACTTGTGATGCATTTTACT 57.241 32.000 0.00 0.00 0.00 2.24
656 660 5.886960 AGGACTTGTGATGCATTTTACTC 57.113 39.130 0.00 0.00 0.00 2.59
681 685 3.002791 CTGGATCATGTGTTACACGCTT 58.997 45.455 11.07 0.00 37.14 4.68
798 802 6.260050 GGATTATGATACGTGTGTGTTGGATT 59.740 38.462 0.00 0.00 0.00 3.01
955 959 7.534085 GCACATGCATACTTACTAGTGTAAA 57.466 36.000 5.39 0.00 38.30 2.01
992 996 0.033991 CCTCTCACTCTCCTTCCGGA 60.034 60.000 0.00 0.00 37.82 5.14
1116 1120 0.719015 TCCTCCCTCCTTCATCCAGT 59.281 55.000 0.00 0.00 0.00 4.00
1426 1439 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1458 1493 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
1631 1675 5.521696 ACAATGATCCAATGATCCCTTCAA 58.478 37.500 0.46 0.00 45.74 2.69
1674 1718 4.201950 GGTGTCTGAAATGATATGTGGTGC 60.202 45.833 0.00 0.00 0.00 5.01
1675 1719 4.395854 GTGTCTGAAATGATATGTGGTGCA 59.604 41.667 0.00 0.00 0.00 4.57
1736 1783 7.665974 AGTTATAGCCTTGCTAACTCTTTTTGT 59.334 33.333 0.00 0.00 44.62 2.83
1787 1895 7.786046 TCTTACCTGATAACTGTCCACTTTA 57.214 36.000 0.00 0.00 0.00 1.85
1801 1909 4.082408 GTCCACTTTACCACCCAAAATAGC 60.082 45.833 0.00 0.00 0.00 2.97
1860 1992 6.599244 AGTTAATGATCCACGAACATTGATGT 59.401 34.615 7.23 0.00 44.20 3.06
1963 2096 3.686726 GTGCTAGTGAGGAAATTCAGTGG 59.313 47.826 0.00 0.00 33.05 4.00
2063 2196 7.231317 TGTGGAAACATTATTTTCTCAGAAGCT 59.769 33.333 0.00 0.00 46.14 3.74
2084 2217 4.378459 GCTCAAGTATAGCCACACAACAAC 60.378 45.833 0.00 0.00 33.73 3.32
2124 2257 1.856629 AGTCCCCATGCTCCATTTTG 58.143 50.000 0.00 0.00 0.00 2.44
2249 2414 2.542178 TCACACAATATTATCACGCGCC 59.458 45.455 5.73 0.00 0.00 6.53
2291 2456 0.984995 AAACCAGGAGCCTGTAGGAC 59.015 55.000 14.97 0.00 42.15 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 3.244044 GGTTTGCAACTTCAAGGGCAATA 60.244 43.478 16.60 7.73 44.70 1.90
269 271 5.727279 TGTAAATACTCACCTTGGGTATGGA 59.273 40.000 0.00 0.00 42.86 3.41
303 305 7.751732 AGTTGCATGTACAATGTGTATACAAG 58.248 34.615 7.25 0.97 40.84 3.16
373 377 3.118482 TGCACCAAAAATTGCTTCCTCAA 60.118 39.130 0.00 0.00 39.62 3.02
480 484 5.305128 AGGTCCATCTTTTGAAGCAATGAAA 59.695 36.000 0.00 0.00 0.00 2.69
600 604 9.862149 TCATAGATGTGTCAGTTTAGTCCTATA 57.138 33.333 0.00 0.00 0.00 1.31
601 605 8.768501 TCATAGATGTGTCAGTTTAGTCCTAT 57.231 34.615 0.00 0.00 0.00 2.57
602 606 8.768501 ATCATAGATGTGTCAGTTTAGTCCTA 57.231 34.615 0.00 0.00 0.00 2.94
603 607 7.667575 ATCATAGATGTGTCAGTTTAGTCCT 57.332 36.000 0.00 0.00 0.00 3.85
604 608 8.634444 ACTATCATAGATGTGTCAGTTTAGTCC 58.366 37.037 0.00 0.00 0.00 3.85
610 614 9.823647 CCTAAAACTATCATAGATGTGTCAGTT 57.176 33.333 0.00 0.00 0.00 3.16
611 615 9.201989 TCCTAAAACTATCATAGATGTGTCAGT 57.798 33.333 0.00 0.00 0.00 3.41
612 616 9.469807 GTCCTAAAACTATCATAGATGTGTCAG 57.530 37.037 0.00 0.00 0.00 3.51
613 617 9.201989 AGTCCTAAAACTATCATAGATGTGTCA 57.798 33.333 0.00 0.00 0.00 3.58
615 619 9.823647 CAAGTCCTAAAACTATCATAGATGTGT 57.176 33.333 0.00 0.00 0.00 3.72
616 620 9.823647 ACAAGTCCTAAAACTATCATAGATGTG 57.176 33.333 0.00 0.00 0.00 3.21
617 621 9.823647 CACAAGTCCTAAAACTATCATAGATGT 57.176 33.333 0.00 0.00 0.00 3.06
621 625 8.768955 GCATCACAAGTCCTAAAACTATCATAG 58.231 37.037 0.00 0.00 0.00 2.23
622 626 8.264347 TGCATCACAAGTCCTAAAACTATCATA 58.736 33.333 0.00 0.00 0.00 2.15
623 627 7.112122 TGCATCACAAGTCCTAAAACTATCAT 58.888 34.615 0.00 0.00 0.00 2.45
624 628 6.472016 TGCATCACAAGTCCTAAAACTATCA 58.528 36.000 0.00 0.00 0.00 2.15
625 629 6.985188 TGCATCACAAGTCCTAAAACTATC 57.015 37.500 0.00 0.00 0.00 2.08
626 630 7.944729 AATGCATCACAAGTCCTAAAACTAT 57.055 32.000 0.00 0.00 0.00 2.12
627 631 7.759489 AAATGCATCACAAGTCCTAAAACTA 57.241 32.000 0.00 0.00 0.00 2.24
628 632 6.655078 AAATGCATCACAAGTCCTAAAACT 57.345 33.333 0.00 0.00 0.00 2.66
629 633 8.082242 AGTAAAATGCATCACAAGTCCTAAAAC 58.918 33.333 0.00 0.00 0.00 2.43
630 634 8.177119 AGTAAAATGCATCACAAGTCCTAAAA 57.823 30.769 0.00 0.00 0.00 1.52
631 635 7.665559 AGAGTAAAATGCATCACAAGTCCTAAA 59.334 33.333 0.00 0.00 0.00 1.85
632 636 7.168219 AGAGTAAAATGCATCACAAGTCCTAA 58.832 34.615 0.00 0.00 0.00 2.69
633 637 6.711277 AGAGTAAAATGCATCACAAGTCCTA 58.289 36.000 0.00 0.00 0.00 2.94
634 638 5.564550 AGAGTAAAATGCATCACAAGTCCT 58.435 37.500 0.00 0.00 0.00 3.85
635 639 5.886960 AGAGTAAAATGCATCACAAGTCC 57.113 39.130 0.00 0.00 0.00 3.85
636 640 7.536622 CAGAAAGAGTAAAATGCATCACAAGTC 59.463 37.037 0.00 0.00 0.00 3.01
637 641 7.365741 CAGAAAGAGTAAAATGCATCACAAGT 58.634 34.615 0.00 0.00 0.00 3.16
638 642 6.805271 CCAGAAAGAGTAAAATGCATCACAAG 59.195 38.462 0.00 0.00 0.00 3.16
639 643 6.489700 TCCAGAAAGAGTAAAATGCATCACAA 59.510 34.615 0.00 0.00 0.00 3.33
640 644 6.003326 TCCAGAAAGAGTAAAATGCATCACA 58.997 36.000 0.00 0.00 0.00 3.58
641 645 6.500684 TCCAGAAAGAGTAAAATGCATCAC 57.499 37.500 0.00 0.00 0.00 3.06
642 646 6.885918 TGATCCAGAAAGAGTAAAATGCATCA 59.114 34.615 0.00 0.00 0.00 3.07
643 647 7.325660 TGATCCAGAAAGAGTAAAATGCATC 57.674 36.000 0.00 0.00 0.00 3.91
644 648 7.341256 ACATGATCCAGAAAGAGTAAAATGCAT 59.659 33.333 0.00 0.00 0.00 3.96
645 649 6.660521 ACATGATCCAGAAAGAGTAAAATGCA 59.339 34.615 0.00 0.00 0.00 3.96
646 650 6.971184 CACATGATCCAGAAAGAGTAAAATGC 59.029 38.462 0.00 0.00 0.00 3.56
647 651 8.048534 ACACATGATCCAGAAAGAGTAAAATG 57.951 34.615 0.00 0.00 0.00 2.32
648 652 8.641498 AACACATGATCCAGAAAGAGTAAAAT 57.359 30.769 0.00 0.00 0.00 1.82
649 653 8.999431 GTAACACATGATCCAGAAAGAGTAAAA 58.001 33.333 0.00 0.00 0.00 1.52
650 654 8.154203 TGTAACACATGATCCAGAAAGAGTAAA 58.846 33.333 0.00 0.00 0.00 2.01
651 655 7.602644 GTGTAACACATGATCCAGAAAGAGTAA 59.397 37.037 0.00 0.00 36.32 2.24
652 656 7.097192 GTGTAACACATGATCCAGAAAGAGTA 58.903 38.462 0.00 0.00 36.32 2.59
653 657 5.934625 GTGTAACACATGATCCAGAAAGAGT 59.065 40.000 0.00 0.00 36.32 3.24
654 658 5.062683 CGTGTAACACATGATCCAGAAAGAG 59.937 44.000 0.00 0.00 37.29 2.85
655 659 4.929211 CGTGTAACACATGATCCAGAAAGA 59.071 41.667 0.00 0.00 37.29 2.52
656 660 4.436050 GCGTGTAACACATGATCCAGAAAG 60.436 45.833 0.00 0.00 37.29 2.62
681 685 5.005740 GTCTAATGCCCAATGATATGAGCA 58.994 41.667 0.00 0.00 34.28 4.26
904 908 4.798387 GCACGTCTGAAACAAAATGAGTTT 59.202 37.500 0.00 0.00 41.53 2.66
968 972 2.304470 GGAAGGAGAGTGAGAGGCTTTT 59.696 50.000 0.00 0.00 0.00 2.27
971 975 0.682855 CGGAAGGAGAGTGAGAGGCT 60.683 60.000 0.00 0.00 0.00 4.58
972 976 1.813192 CGGAAGGAGAGTGAGAGGC 59.187 63.158 0.00 0.00 0.00 4.70
992 996 1.156736 CGGTTTCGACATGGCTTCTT 58.843 50.000 0.00 0.00 39.00 2.52
1081 1085 0.836400 AGGAGGAGCGTTGGAGGAAA 60.836 55.000 0.00 0.00 0.00 3.13
1202 1215 2.574955 GGGTCGTGCTGGTGTCTCT 61.575 63.158 0.00 0.00 0.00 3.10
1426 1439 4.625742 CCGTCCCATAATATAAGAGCAACG 59.374 45.833 0.00 0.00 0.00 4.10
1442 1477 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
1444 1479 1.255667 TGCAAGTACTCCCTCCGTCC 61.256 60.000 0.00 0.00 0.00 4.79
1458 1493 6.527722 ACACTGACGCATAATAAAATTGCAAG 59.472 34.615 4.94 0.00 36.15 4.01
1631 1675 5.171476 CACCGAGTGAAGATAAACTCACAT 58.829 41.667 5.13 0.00 42.45 3.21
1674 1718 4.459390 TGGCAAGACATGATCCATTTTG 57.541 40.909 0.00 0.00 0.00 2.44
1675 1719 5.486735 TTTGGCAAGACATGATCCATTTT 57.513 34.783 0.00 0.00 0.00 1.82
1768 1876 4.935808 GTGGTAAAGTGGACAGTTATCAGG 59.064 45.833 0.00 0.00 0.00 3.86
1780 1888 3.194755 GGCTATTTTGGGTGGTAAAGTGG 59.805 47.826 0.00 0.00 0.00 4.00
1787 1895 0.113580 AACGGGCTATTTTGGGTGGT 59.886 50.000 0.00 0.00 0.00 4.16
1801 1909 2.030363 TGCACAGCTTAAATCAAACGGG 60.030 45.455 0.00 0.00 0.00 5.28
2063 2196 4.069304 GGTTGTTGTGTGGCTATACTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2084 2217 7.175641 GGGACTTAAGATGGATGTATTGAATGG 59.824 40.741 10.09 0.00 0.00 3.16
2202 2338 8.031864 AGTTTGTGACTTGTGAGATATCTACAG 58.968 37.037 4.89 2.15 33.92 2.74
2249 2414 9.626045 GTTTGACATAAGAAAATGGTCCTTTAG 57.374 33.333 0.00 0.00 0.00 1.85
2291 2456 5.972107 AGAATTTGAATTGGTGAGGTCAG 57.028 39.130 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.