Multiple sequence alignment - TraesCS1A01G145800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G145800 chr1A 100.000 5811 0 0 1 5811 252287000 252281190 0.000000e+00 10732.0
1 TraesCS1A01G145800 chr1A 99.371 318 2 0 5494 5811 504634029 504633712 1.400000e-160 577.0
2 TraesCS1A01G145800 chr1A 94.595 37 1 1 5324 5360 134948714 134948679 8.130000e-04 56.5
3 TraesCS1A01G145800 chr1D 95.447 4898 124 31 624 5499 199839599 199834779 0.000000e+00 7718.0
4 TraesCS1A01G145800 chr1D 92.222 180 10 4 5498 5675 339742182 339742005 9.670000e-63 252.0
5 TraesCS1A01G145800 chr1D 89.375 160 13 4 5495 5652 467445687 467445844 1.280000e-46 198.0
6 TraesCS1A01G145800 chr1B 94.247 3355 118 29 1783 5102 286323884 286320570 0.000000e+00 5057.0
7 TraesCS1A01G145800 chr1B 87.202 1008 52 29 693 1689 286324826 286323885 0.000000e+00 1075.0
8 TraesCS1A01G145800 chr1B 87.889 611 40 14 1 592 100159004 100159599 0.000000e+00 688.0
9 TraesCS1A01G145800 chr1B 93.284 402 15 7 5100 5499 286320488 286320097 3.020000e-162 582.0
10 TraesCS1A01G145800 chr1B 99.363 314 2 0 5498 5811 704263 703950 2.350000e-158 569.0
11 TraesCS1A01G145800 chr6A 96.435 589 21 0 1 589 601214696 601214108 0.000000e+00 972.0
12 TraesCS1A01G145800 chr6A 99.682 314 1 0 5498 5811 520357903 520358216 5.050000e-160 575.0
13 TraesCS1A01G145800 chr6A 87.000 400 31 7 213 592 464937290 464937688 1.160000e-116 431.0
14 TraesCS1A01G145800 chr2A 96.121 593 23 0 1 593 6016122 6015530 0.000000e+00 968.0
15 TraesCS1A01G145800 chr2A 95.953 593 24 0 1 593 6107445 6106853 0.000000e+00 963.0
16 TraesCS1A01G145800 chr2A 95.616 593 26 0 1 593 6041019 6040427 0.000000e+00 952.0
17 TraesCS1A01G145800 chr2A 95.616 593 26 0 1 593 6159160 6158568 0.000000e+00 952.0
18 TraesCS1A01G145800 chr2A 89.761 293 12 7 318 592 760340793 760341085 5.540000e-95 359.0
19 TraesCS1A01G145800 chr2A 90.338 207 20 0 112 318 760338668 760338874 7.420000e-69 272.0
20 TraesCS1A01G145800 chr3B 94.118 595 34 1 1 595 765385271 765384678 0.000000e+00 904.0
21 TraesCS1A01G145800 chr3B 82.521 349 49 6 39 387 27894538 27894202 4.400000e-76 296.0
22 TraesCS1A01G145800 chr5D 89.369 555 49 7 2495 3043 35871320 35870770 0.000000e+00 689.0
23 TraesCS1A01G145800 chr5D 97.222 36 0 1 5315 5350 74717124 74717090 6.290000e-05 60.2
24 TraesCS1A01G145800 chrUn 89.599 548 47 7 2515 3059 45879889 45880429 0.000000e+00 688.0
25 TraesCS1A01G145800 chrUn 99.367 316 2 0 5496 5811 366194846 366195161 1.820000e-159 573.0
26 TraesCS1A01G145800 chr5A 89.130 552 50 8 2495 3040 324967379 324967926 0.000000e+00 678.0
27 TraesCS1A01G145800 chr5A 99.685 317 1 0 5495 5811 445248170 445248486 1.090000e-161 580.0
28 TraesCS1A01G145800 chr5A 99.684 316 1 0 5496 5811 521283475 521283160 3.900000e-161 579.0
29 TraesCS1A01G145800 chr6D 88.829 555 52 7 2495 3043 461003323 461002773 0.000000e+00 673.0
30 TraesCS1A01G145800 chr6D 89.697 330 28 4 2495 2819 435548113 435547785 3.240000e-112 416.0
31 TraesCS1A01G145800 chr3A 99.367 316 2 0 5496 5811 738084086 738083771 1.820000e-159 573.0
32 TraesCS1A01G145800 chr7B 88.679 371 24 6 240 592 565682620 565682990 2.490000e-118 436.0
33 TraesCS1A01G145800 chr5B 90.265 226 18 3 2731 2955 310935011 310934789 5.700000e-75 292.0
34 TraesCS1A01G145800 chr5B 89.823 226 19 3 2731 2955 310864226 310864004 2.650000e-73 287.0
35 TraesCS1A01G145800 chr4B 84.091 220 35 0 58 277 348051328 348051109 4.560000e-51 213.0
36 TraesCS1A01G145800 chr4B 94.000 50 2 1 5303 5351 517126188 517126237 2.250000e-09 75.0
37 TraesCS1A01G145800 chr4B 92.000 50 3 1 5303 5351 517059609 517059658 1.040000e-07 69.4
38 TraesCS1A01G145800 chr4D 95.349 43 1 1 5311 5352 500048762 500048804 3.760000e-07 67.6
39 TraesCS1A01G145800 chr6B 94.872 39 1 1 5316 5353 266745662 266745700 6.290000e-05 60.2
40 TraesCS1A01G145800 chr7A 87.755 49 5 1 5311 5358 84036399 84036351 8.130000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G145800 chr1A 252281190 252287000 5810 True 10732.0 10732 100.000000 1 5811 1 chr1A.!!$R2 5810
1 TraesCS1A01G145800 chr1D 199834779 199839599 4820 True 7718.0 7718 95.447000 624 5499 1 chr1D.!!$R1 4875
2 TraesCS1A01G145800 chr1B 286320097 286324826 4729 True 2238.0 5057 91.577667 693 5499 3 chr1B.!!$R2 4806
3 TraesCS1A01G145800 chr1B 100159004 100159599 595 False 688.0 688 87.889000 1 592 1 chr1B.!!$F1 591
4 TraesCS1A01G145800 chr6A 601214108 601214696 588 True 972.0 972 96.435000 1 589 1 chr6A.!!$R1 588
5 TraesCS1A01G145800 chr2A 6015530 6016122 592 True 968.0 968 96.121000 1 593 1 chr2A.!!$R1 592
6 TraesCS1A01G145800 chr2A 6106853 6107445 592 True 963.0 963 95.953000 1 593 1 chr2A.!!$R3 592
7 TraesCS1A01G145800 chr2A 6040427 6041019 592 True 952.0 952 95.616000 1 593 1 chr2A.!!$R2 592
8 TraesCS1A01G145800 chr2A 6158568 6159160 592 True 952.0 952 95.616000 1 593 1 chr2A.!!$R4 592
9 TraesCS1A01G145800 chr2A 760338668 760341085 2417 False 315.5 359 90.049500 112 592 2 chr2A.!!$F1 480
10 TraesCS1A01G145800 chr3B 765384678 765385271 593 True 904.0 904 94.118000 1 595 1 chr3B.!!$R2 594
11 TraesCS1A01G145800 chr5D 35870770 35871320 550 True 689.0 689 89.369000 2495 3043 1 chr5D.!!$R1 548
12 TraesCS1A01G145800 chrUn 45879889 45880429 540 False 688.0 688 89.599000 2515 3059 1 chrUn.!!$F1 544
13 TraesCS1A01G145800 chr5A 324967379 324967926 547 False 678.0 678 89.130000 2495 3040 1 chr5A.!!$F1 545
14 TraesCS1A01G145800 chr6D 461002773 461003323 550 True 673.0 673 88.829000 2495 3043 1 chr6D.!!$R2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.250513 GGGGAAGAGCTCGTCATTGT 59.749 55.000 27.35 0.0 0.00 2.71 F
1273 3240 0.251787 TGCTCTGCTCCTGTCCTGTA 60.252 55.000 0.00 0.0 0.00 2.74 F
1274 3241 0.898320 GCTCTGCTCCTGTCCTGTAA 59.102 55.000 0.00 0.0 0.00 2.41 F
1549 3516 1.047002 CTAGGCCTCCTGAGATGTGG 58.953 60.000 9.68 0.0 34.61 4.17 F
3137 5122 1.547372 CTTGGCTGTCAGGGAATTTGG 59.453 52.381 1.14 0.0 0.00 3.28 F
3573 5558 2.414994 AGCCATGTTGACTCTCCATG 57.585 50.000 0.00 0.0 36.56 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 3689 0.034059 AAGTTCTGTCAGCTCCCGTG 59.966 55.000 0.0 0.00 0.00 4.94 R
3119 5104 0.899717 GCCAAATTCCCTGACAGCCA 60.900 55.000 0.0 0.00 0.00 4.75 R
3496 5481 8.103305 AGAATCAGGAAACTACTAAGCAAATGA 58.897 33.333 0.0 0.00 40.21 2.57 R
3546 5531 4.265073 AGAGTCAACATGGCTAATGGAAC 58.735 43.478 0.0 1.18 40.94 3.62 R
4467 6458 0.870393 ACAGATGCAAAGTCGCAGTG 59.130 50.000 0.0 0.00 46.99 3.66 R
5765 7863 0.105039 GTGGAGATCGGGATGGTGTC 59.895 60.000 0.0 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.555075 AGCCTAATGAAGTCTTGGCGA 59.445 47.619 5.49 0.00 44.42 5.54
93 94 4.498513 GCGTGTAAAAGCCTTACCAACTTT 60.499 41.667 4.35 0.00 35.20 2.66
198 199 0.250513 GGGGAAGAGCTCGTCATTGT 59.749 55.000 27.35 0.00 0.00 2.71
308 310 1.146263 GGACGGCGGATTGATTCCT 59.854 57.895 13.24 0.00 42.99 3.36
518 2474 3.904800 TCGTGAGGCTCCAATTAATCA 57.095 42.857 12.86 0.00 0.00 2.57
603 2559 9.839185 AATAGTAGTAGAGATAGAGAGGAGAGT 57.161 37.037 0.00 0.00 0.00 3.24
604 2560 7.540474 AGTAGTAGAGATAGAGAGGAGAGTG 57.460 44.000 0.00 0.00 0.00 3.51
605 2561 7.302948 AGTAGTAGAGATAGAGAGGAGAGTGA 58.697 42.308 0.00 0.00 0.00 3.41
606 2562 6.672266 AGTAGAGATAGAGAGGAGAGTGAG 57.328 45.833 0.00 0.00 0.00 3.51
607 2563 6.382087 AGTAGAGATAGAGAGGAGAGTGAGA 58.618 44.000 0.00 0.00 0.00 3.27
608 2564 5.815233 AGAGATAGAGAGGAGAGTGAGAG 57.185 47.826 0.00 0.00 0.00 3.20
609 2565 4.594920 AGAGATAGAGAGGAGAGTGAGAGG 59.405 50.000 0.00 0.00 0.00 3.69
610 2566 4.307259 AGATAGAGAGGAGAGTGAGAGGT 58.693 47.826 0.00 0.00 0.00 3.85
611 2567 4.726825 AGATAGAGAGGAGAGTGAGAGGTT 59.273 45.833 0.00 0.00 0.00 3.50
612 2568 3.085952 AGAGAGGAGAGTGAGAGGTTG 57.914 52.381 0.00 0.00 0.00 3.77
613 2569 2.099405 GAGAGGAGAGTGAGAGGTTGG 58.901 57.143 0.00 0.00 0.00 3.77
614 2570 0.534873 GAGGAGAGTGAGAGGTTGGC 59.465 60.000 0.00 0.00 0.00 4.52
615 2571 0.907230 AGGAGAGTGAGAGGTTGGCC 60.907 60.000 0.00 0.00 0.00 5.36
616 2572 1.194781 GGAGAGTGAGAGGTTGGCCA 61.195 60.000 0.00 0.00 37.19 5.36
617 2573 0.908198 GAGAGTGAGAGGTTGGCCAT 59.092 55.000 6.09 0.00 37.19 4.40
618 2574 1.280421 GAGAGTGAGAGGTTGGCCATT 59.720 52.381 6.09 0.00 37.19 3.16
619 2575 1.280421 AGAGTGAGAGGTTGGCCATTC 59.720 52.381 6.09 5.17 37.19 2.67
620 2576 1.003580 GAGTGAGAGGTTGGCCATTCA 59.996 52.381 6.09 3.17 37.19 2.57
621 2577 1.637553 AGTGAGAGGTTGGCCATTCAT 59.362 47.619 6.09 0.00 37.19 2.57
622 2578 2.042162 AGTGAGAGGTTGGCCATTCATT 59.958 45.455 6.09 0.08 37.19 2.57
623 2579 2.827921 GTGAGAGGTTGGCCATTCATTT 59.172 45.455 6.09 0.00 37.19 2.32
624 2580 3.259123 GTGAGAGGTTGGCCATTCATTTT 59.741 43.478 6.09 0.00 37.19 1.82
625 2581 4.462483 GTGAGAGGTTGGCCATTCATTTTA 59.538 41.667 6.09 0.00 37.19 1.52
626 2582 4.706476 TGAGAGGTTGGCCATTCATTTTAG 59.294 41.667 6.09 0.00 37.19 1.85
627 2583 4.026052 AGAGGTTGGCCATTCATTTTAGG 58.974 43.478 6.09 0.00 37.19 2.69
628 2584 3.106827 AGGTTGGCCATTCATTTTAGGG 58.893 45.455 6.09 0.00 37.19 3.53
660 2617 2.048603 GCGCTTTCCTGATGGCCTT 61.049 57.895 3.32 0.00 0.00 4.35
691 2648 4.202182 CCCAAATTCTCATGAAATCCGCAT 60.202 41.667 0.00 0.00 35.63 4.73
879 2842 3.771160 TCCTTCCTCGCTTCCGGC 61.771 66.667 0.00 0.00 34.56 6.13
894 2857 3.112709 GGCGCAGACTTGTCGACC 61.113 66.667 14.12 0.00 0.00 4.79
914 2877 1.008652 CTCTCTCCGCTGATCGCTG 60.009 63.158 7.71 2.28 36.73 5.18
930 2897 2.684374 TCGCTGCCTATTACTTGTCGTA 59.316 45.455 0.00 0.00 0.00 3.43
934 2901 4.360563 CTGCCTATTACTTGTCGTACCAG 58.639 47.826 0.00 0.00 0.00 4.00
935 2902 3.765511 TGCCTATTACTTGTCGTACCAGT 59.234 43.478 0.00 0.00 0.00 4.00
936 2903 4.110482 GCCTATTACTTGTCGTACCAGTG 58.890 47.826 0.00 0.00 0.00 3.66
963 2930 3.966543 CCCGCCCCAGTCCACTTT 61.967 66.667 0.00 0.00 0.00 2.66
1236 3203 1.745489 GCCAACGTCAGGGATGGTC 60.745 63.158 8.84 0.00 35.34 4.02
1237 3204 1.078426 CCAACGTCAGGGATGGTCC 60.078 63.158 0.00 0.00 35.23 4.46
1238 3205 1.553690 CCAACGTCAGGGATGGTCCT 61.554 60.000 0.00 0.00 36.57 3.85
1239 3206 0.324943 CAACGTCAGGGATGGTCCTT 59.675 55.000 0.00 0.00 36.57 3.36
1240 3207 1.064825 AACGTCAGGGATGGTCCTTT 58.935 50.000 0.00 0.00 36.57 3.11
1241 3208 0.613777 ACGTCAGGGATGGTCCTTTC 59.386 55.000 0.00 0.00 36.57 2.62
1242 3209 0.613260 CGTCAGGGATGGTCCTTTCA 59.387 55.000 0.00 0.00 36.57 2.69
1243 3210 1.210478 CGTCAGGGATGGTCCTTTCAT 59.790 52.381 0.00 0.00 36.57 2.57
1273 3240 0.251787 TGCTCTGCTCCTGTCCTGTA 60.252 55.000 0.00 0.00 0.00 2.74
1274 3241 0.898320 GCTCTGCTCCTGTCCTGTAA 59.102 55.000 0.00 0.00 0.00 2.41
1275 3242 1.404851 GCTCTGCTCCTGTCCTGTAAC 60.405 57.143 0.00 0.00 0.00 2.50
1276 3243 2.175202 CTCTGCTCCTGTCCTGTAACT 58.825 52.381 0.00 0.00 0.00 2.24
1277 3244 2.165437 CTCTGCTCCTGTCCTGTAACTC 59.835 54.545 0.00 0.00 0.00 3.01
1278 3245 1.205893 CTGCTCCTGTCCTGTAACTCC 59.794 57.143 0.00 0.00 0.00 3.85
1279 3246 1.203187 TGCTCCTGTCCTGTAACTCCT 60.203 52.381 0.00 0.00 0.00 3.69
1280 3247 1.205893 GCTCCTGTCCTGTAACTCCTG 59.794 57.143 0.00 0.00 0.00 3.86
1281 3248 2.530701 CTCCTGTCCTGTAACTCCTGT 58.469 52.381 0.00 0.00 0.00 4.00
1282 3249 2.900546 CTCCTGTCCTGTAACTCCTGTT 59.099 50.000 0.00 0.00 39.98 3.16
1283 3250 2.632996 TCCTGTCCTGTAACTCCTGTTG 59.367 50.000 0.00 0.00 37.59 3.33
1284 3251 2.632996 CCTGTCCTGTAACTCCTGTTGA 59.367 50.000 0.00 0.00 37.59 3.18
1285 3252 3.261897 CCTGTCCTGTAACTCCTGTTGAT 59.738 47.826 0.00 0.00 37.59 2.57
1286 3253 4.248859 CTGTCCTGTAACTCCTGTTGATG 58.751 47.826 0.00 0.00 37.59 3.07
1287 3254 3.646162 TGTCCTGTAACTCCTGTTGATGT 59.354 43.478 0.00 0.00 37.59 3.06
1368 3335 6.446781 AAGCGCTCTATAACTGTGTTACTA 57.553 37.500 12.06 0.00 0.00 1.82
1369 3336 5.819059 AGCGCTCTATAACTGTGTTACTAC 58.181 41.667 2.64 0.00 0.00 2.73
1370 3337 5.589452 AGCGCTCTATAACTGTGTTACTACT 59.411 40.000 2.64 0.00 0.00 2.57
1371 3338 5.681982 GCGCTCTATAACTGTGTTACTACTG 59.318 44.000 0.00 0.00 0.00 2.74
1372 3339 5.681982 CGCTCTATAACTGTGTTACTACTGC 59.318 44.000 0.00 0.00 0.00 4.40
1411 3378 4.487948 TGAAATCGTTGTCGTAAGTAGGG 58.512 43.478 0.00 0.00 38.33 3.53
1491 3458 3.268330 GGTCCTCGGAGTTATTTGGAAC 58.732 50.000 4.02 0.00 0.00 3.62
1492 3459 3.055312 GGTCCTCGGAGTTATTTGGAACT 60.055 47.826 4.02 0.00 42.42 3.01
1493 3460 4.565028 GGTCCTCGGAGTTATTTGGAACTT 60.565 45.833 4.02 0.00 39.79 2.66
1494 3461 4.392138 GTCCTCGGAGTTATTTGGAACTTG 59.608 45.833 4.02 0.00 39.79 3.16
1495 3462 3.689649 CCTCGGAGTTATTTGGAACTTGG 59.310 47.826 4.02 0.00 39.79 3.61
1496 3463 4.564821 CCTCGGAGTTATTTGGAACTTGGA 60.565 45.833 4.02 0.00 39.79 3.53
1497 3464 4.975631 TCGGAGTTATTTGGAACTTGGAA 58.024 39.130 0.00 0.00 39.79 3.53
1549 3516 1.047002 CTAGGCCTCCTGAGATGTGG 58.953 60.000 9.68 0.00 34.61 4.17
1579 3546 4.022464 TCGCGTGTGACTTCAAATTTTT 57.978 36.364 5.77 0.00 0.00 1.94
1604 3571 2.690497 TCTCCGTTTCTCTGCTATCCAG 59.310 50.000 0.00 0.00 43.17 3.86
1611 3578 4.478206 TTCTCTGCTATCCAGGACTTTG 57.522 45.455 0.00 0.00 42.05 2.77
1669 3637 2.750888 GCGACCGTTGGGCAGATTC 61.751 63.158 0.00 0.00 36.48 2.52
1693 3661 5.694910 CCAGCAAATGAATCCAATTGATAGC 59.305 40.000 7.12 0.79 35.69 2.97
1707 3675 6.713903 CCAATTGATAGCAGATGGAACTGTAT 59.286 38.462 7.12 0.00 39.73 2.29
1721 3689 4.395231 GGAACTGTATAGCACAAACTTCCC 59.605 45.833 0.00 0.00 36.48 3.97
1725 3693 1.821216 ATAGCACAAACTTCCCACGG 58.179 50.000 0.00 0.00 0.00 4.94
1737 3705 2.583441 CCCACGGGAGCTGACAGAA 61.583 63.158 6.65 0.00 37.50 3.02
2180 4151 4.838423 CCCATACCATATATCGGCTATGGA 59.162 45.833 23.08 8.52 45.72 3.41
2314 4285 6.940298 TCCTGGGAAACAAACTAATAGTCTTG 59.060 38.462 11.18 11.18 0.00 3.02
2544 4515 5.635866 TCCGTGTTACATAATGCACAATTG 58.364 37.500 3.24 3.24 32.62 2.32
2569 4540 8.676401 TGGTGTGATGTTGATTATTGTTATGAG 58.324 33.333 0.00 0.00 0.00 2.90
2727 4702 3.141398 CCTCCCAACAATGATGGATACG 58.859 50.000 11.35 0.00 40.56 3.06
3065 5050 7.068839 TCAGAGATGAGTAGGTTCTAATGTTCC 59.931 40.741 0.00 0.00 0.00 3.62
3119 5104 6.766467 AGTTTGAAAGATCTGACGTTAACCTT 59.234 34.615 0.00 0.00 0.00 3.50
3137 5122 1.547372 CTTGGCTGTCAGGGAATTTGG 59.453 52.381 1.14 0.00 0.00 3.28
3193 5178 6.095440 GCTGCTTTATTCCCATCTTTTACTCA 59.905 38.462 0.00 0.00 0.00 3.41
3194 5179 7.201857 GCTGCTTTATTCCCATCTTTTACTCAT 60.202 37.037 0.00 0.00 0.00 2.90
3315 5300 5.592282 TGTTCTTGCAAGTACATTTGGAGAA 59.408 36.000 28.58 9.47 32.41 2.87
3525 5510 6.769512 TGCTTAGTAGTTTCCTGATTCTGTT 58.230 36.000 0.00 0.00 0.00 3.16
3573 5558 2.414994 AGCCATGTTGACTCTCCATG 57.585 50.000 0.00 0.00 36.56 3.66
3680 5665 6.294453 CCACTCATCGCTTAGAGTCAGATATT 60.294 42.308 0.00 0.00 42.87 1.28
3944 5929 4.002982 CACAGTTTCTAGTAGCATTGGCA 58.997 43.478 0.00 0.00 44.61 4.92
3982 5967 5.955959 ACTTTTGGTTTCCTGTTAGGTCTTT 59.044 36.000 0.00 0.00 36.53 2.52
4192 6183 6.824305 ACTGATTTACATGTTCTTTCCCTG 57.176 37.500 2.30 0.00 0.00 4.45
4419 6410 4.743644 CGTACTCGTCTGTTTTCTTTCCTT 59.256 41.667 0.00 0.00 0.00 3.36
4467 6458 1.329906 CCAAGCGTCAAGATGAGCATC 59.670 52.381 2.27 2.27 38.09 3.91
4753 6746 1.901833 GATGGTTTTGAGGTGGGCAAT 59.098 47.619 0.00 0.00 0.00 3.56
4979 6991 6.862209 ACTCTCTCATATATCGAATTCAGCC 58.138 40.000 6.22 0.00 0.00 4.85
5084 7096 5.008712 GGTCAGTTCCTTTTCTAAGTTGTGG 59.991 44.000 0.00 0.00 0.00 4.17
5098 7110 4.810191 AGTTGTGGTCATCCTAGTTCTC 57.190 45.455 0.00 0.00 34.23 2.87
5347 7444 8.998957 TTTATATTATGGGATGGAGGGAGTAA 57.001 34.615 0.00 0.00 0.00 2.24
5500 7598 7.936584 TGTACAAATGCAAATATACCTTAGGC 58.063 34.615 0.00 0.00 0.00 3.93
5501 7599 6.405278 ACAAATGCAAATATACCTTAGGCC 57.595 37.500 0.00 0.00 0.00 5.19
5502 7600 5.304357 ACAAATGCAAATATACCTTAGGCCC 59.696 40.000 0.00 0.00 0.00 5.80
5503 7601 3.518992 TGCAAATATACCTTAGGCCCC 57.481 47.619 0.00 0.00 0.00 5.80
5504 7602 2.224670 TGCAAATATACCTTAGGCCCCG 60.225 50.000 0.00 0.00 0.00 5.73
5505 7603 2.433436 CAAATATACCTTAGGCCCCGC 58.567 52.381 0.00 0.00 0.00 6.13
5506 7604 2.039879 CAAATATACCTTAGGCCCCGCT 59.960 50.000 0.00 0.00 0.00 5.52
5507 7605 2.040342 ATATACCTTAGGCCCCGCTT 57.960 50.000 0.00 0.00 0.00 4.68
5508 7606 1.053424 TATACCTTAGGCCCCGCTTG 58.947 55.000 0.00 0.00 0.00 4.01
5509 7607 1.705997 ATACCTTAGGCCCCGCTTGG 61.706 60.000 0.00 0.00 0.00 3.61
5510 7608 2.826136 TACCTTAGGCCCCGCTTGGA 62.826 60.000 0.00 0.00 35.39 3.53
5511 7609 2.674754 CTTAGGCCCCGCTTGGAA 59.325 61.111 0.00 0.00 35.39 3.53
5512 7610 1.452108 CTTAGGCCCCGCTTGGAAG 60.452 63.158 0.00 0.00 35.39 3.46
5521 7619 3.771978 GCTTGGAAGCCCCGAAAA 58.228 55.556 0.00 0.00 46.20 2.29
5522 7620 2.046108 GCTTGGAAGCCCCGAAAAA 58.954 52.632 0.00 0.00 46.20 1.94
5542 7640 6.937436 AAAAATCTTACAGTCGGAACAAGT 57.063 33.333 0.00 0.00 0.00 3.16
5543 7641 6.937436 AAAATCTTACAGTCGGAACAAGTT 57.063 33.333 0.00 0.00 0.00 2.66
5544 7642 8.441312 AAAAATCTTACAGTCGGAACAAGTTA 57.559 30.769 0.00 0.00 0.00 2.24
5545 7643 7.417496 AAATCTTACAGTCGGAACAAGTTAC 57.583 36.000 0.00 0.00 0.00 2.50
5546 7644 5.518848 TCTTACAGTCGGAACAAGTTACA 57.481 39.130 0.00 0.00 0.00 2.41
5547 7645 5.904941 TCTTACAGTCGGAACAAGTTACAA 58.095 37.500 0.00 0.00 0.00 2.41
5548 7646 5.750067 TCTTACAGTCGGAACAAGTTACAAC 59.250 40.000 0.00 0.00 0.00 3.32
5549 7647 3.200483 ACAGTCGGAACAAGTTACAACC 58.800 45.455 0.00 0.00 0.00 3.77
5550 7648 2.220133 CAGTCGGAACAAGTTACAACCG 59.780 50.000 0.00 0.00 41.39 4.44
5551 7649 1.070376 GTCGGAACAAGTTACAACCGC 60.070 52.381 0.00 0.00 40.12 5.68
5552 7650 0.938713 CGGAACAAGTTACAACCGCA 59.061 50.000 0.00 0.00 34.36 5.69
5553 7651 1.533731 CGGAACAAGTTACAACCGCAT 59.466 47.619 0.00 0.00 34.36 4.73
5554 7652 2.737783 CGGAACAAGTTACAACCGCATA 59.262 45.455 0.00 0.00 34.36 3.14
5555 7653 3.186817 CGGAACAAGTTACAACCGCATAA 59.813 43.478 0.00 0.00 34.36 1.90
5556 7654 4.142773 CGGAACAAGTTACAACCGCATAAT 60.143 41.667 0.00 0.00 34.36 1.28
5557 7655 5.063691 CGGAACAAGTTACAACCGCATAATA 59.936 40.000 0.00 0.00 34.36 0.98
5558 7656 6.253013 GGAACAAGTTACAACCGCATAATAC 58.747 40.000 0.00 0.00 0.00 1.89
5559 7657 6.093082 GGAACAAGTTACAACCGCATAATACT 59.907 38.462 0.00 0.00 0.00 2.12
5560 7658 6.417191 ACAAGTTACAACCGCATAATACTG 57.583 37.500 0.00 0.00 0.00 2.74
5561 7659 5.353123 ACAAGTTACAACCGCATAATACTGG 59.647 40.000 0.00 0.00 0.00 4.00
5562 7660 5.093849 AGTTACAACCGCATAATACTGGT 57.906 39.130 0.00 0.00 35.90 4.00
5563 7661 5.114081 AGTTACAACCGCATAATACTGGTC 58.886 41.667 0.00 0.00 32.37 4.02
5564 7662 3.906720 ACAACCGCATAATACTGGTCT 57.093 42.857 0.00 0.00 32.37 3.85
5565 7663 3.793559 ACAACCGCATAATACTGGTCTC 58.206 45.455 0.00 0.00 32.37 3.36
5566 7664 3.131396 CAACCGCATAATACTGGTCTCC 58.869 50.000 0.00 0.00 32.37 3.71
5567 7665 2.394632 ACCGCATAATACTGGTCTCCA 58.605 47.619 0.00 0.00 0.00 3.86
5580 7678 4.192317 CTGGTCTCCAGTAATTTACAGCC 58.808 47.826 9.15 4.80 45.82 4.85
5581 7679 3.195661 GGTCTCCAGTAATTTACAGCCG 58.804 50.000 9.15 0.00 0.00 5.52
5582 7680 3.195661 GTCTCCAGTAATTTACAGCCGG 58.804 50.000 9.15 0.00 0.00 6.13
5583 7681 3.101437 TCTCCAGTAATTTACAGCCGGA 58.899 45.455 5.05 7.75 0.00 5.14
5584 7682 3.709653 TCTCCAGTAATTTACAGCCGGAT 59.290 43.478 5.05 0.00 0.00 4.18
5585 7683 4.897076 TCTCCAGTAATTTACAGCCGGATA 59.103 41.667 5.05 0.00 0.00 2.59
5586 7684 4.952460 TCCAGTAATTTACAGCCGGATAC 58.048 43.478 5.05 0.00 0.00 2.24
5587 7685 4.406326 TCCAGTAATTTACAGCCGGATACA 59.594 41.667 5.05 0.00 0.00 2.29
5588 7686 5.104859 TCCAGTAATTTACAGCCGGATACAA 60.105 40.000 5.05 0.00 0.00 2.41
5589 7687 5.763204 CCAGTAATTTACAGCCGGATACAAT 59.237 40.000 5.05 0.00 0.00 2.71
5590 7688 6.262273 CCAGTAATTTACAGCCGGATACAATT 59.738 38.462 5.05 6.90 0.00 2.32
5591 7689 7.201785 CCAGTAATTTACAGCCGGATACAATTT 60.202 37.037 5.05 1.77 0.00 1.82
5592 7690 7.855904 CAGTAATTTACAGCCGGATACAATTTC 59.144 37.037 5.05 2.39 0.00 2.17
5593 7691 5.767816 ATTTACAGCCGGATACAATTTCC 57.232 39.130 5.05 0.00 0.00 3.13
5605 7703 7.679659 GGATACAATTTCCGCTTGTAAATTC 57.320 36.000 0.27 0.00 41.13 2.17
5606 7704 7.480810 GGATACAATTTCCGCTTGTAAATTCT 58.519 34.615 0.27 0.00 41.13 2.40
5607 7705 7.432252 GGATACAATTTCCGCTTGTAAATTCTG 59.568 37.037 0.27 0.00 41.13 3.02
5608 7706 6.084326 ACAATTTCCGCTTGTAAATTCTGT 57.916 33.333 0.00 0.00 35.15 3.41
5609 7707 6.149633 ACAATTTCCGCTTGTAAATTCTGTC 58.850 36.000 0.00 0.00 35.15 3.51
5610 7708 4.759516 TTTCCGCTTGTAAATTCTGTCC 57.240 40.909 0.00 0.00 0.00 4.02
5611 7709 3.695830 TCCGCTTGTAAATTCTGTCCT 57.304 42.857 0.00 0.00 0.00 3.85
5612 7710 4.015872 TCCGCTTGTAAATTCTGTCCTT 57.984 40.909 0.00 0.00 0.00 3.36
5613 7711 4.000988 TCCGCTTGTAAATTCTGTCCTTC 58.999 43.478 0.00 0.00 0.00 3.46
5614 7712 3.127030 CCGCTTGTAAATTCTGTCCTTCC 59.873 47.826 0.00 0.00 0.00 3.46
5615 7713 3.127030 CGCTTGTAAATTCTGTCCTTCCC 59.873 47.826 0.00 0.00 0.00 3.97
5616 7714 3.444034 GCTTGTAAATTCTGTCCTTCCCC 59.556 47.826 0.00 0.00 0.00 4.81
5617 7715 4.811063 GCTTGTAAATTCTGTCCTTCCCCT 60.811 45.833 0.00 0.00 0.00 4.79
5618 7716 5.325239 CTTGTAAATTCTGTCCTTCCCCTT 58.675 41.667 0.00 0.00 0.00 3.95
5619 7717 4.918588 TGTAAATTCTGTCCTTCCCCTTC 58.081 43.478 0.00 0.00 0.00 3.46
5620 7718 4.352595 TGTAAATTCTGTCCTTCCCCTTCA 59.647 41.667 0.00 0.00 0.00 3.02
5621 7719 3.441500 AATTCTGTCCTTCCCCTTCAC 57.558 47.619 0.00 0.00 0.00 3.18
5622 7720 0.685097 TTCTGTCCTTCCCCTTCACG 59.315 55.000 0.00 0.00 0.00 4.35
5623 7721 1.192146 TCTGTCCTTCCCCTTCACGG 61.192 60.000 0.00 0.00 0.00 4.94
5624 7722 1.460689 TGTCCTTCCCCTTCACGGT 60.461 57.895 0.00 0.00 0.00 4.83
5625 7723 1.057851 TGTCCTTCCCCTTCACGGTT 61.058 55.000 0.00 0.00 0.00 4.44
5626 7724 0.321387 GTCCTTCCCCTTCACGGTTC 60.321 60.000 0.00 0.00 0.00 3.62
5627 7725 1.002502 CCTTCCCCTTCACGGTTCC 60.003 63.158 0.00 0.00 0.00 3.62
5628 7726 1.002502 CTTCCCCTTCACGGTTCCC 60.003 63.158 0.00 0.00 0.00 3.97
5629 7727 1.770927 TTCCCCTTCACGGTTCCCA 60.771 57.895 0.00 0.00 0.00 4.37
5630 7728 2.033602 CCCCTTCACGGTTCCCAC 59.966 66.667 0.00 0.00 0.00 4.61
5631 7729 2.358247 CCCTTCACGGTTCCCACG 60.358 66.667 0.00 0.00 37.36 4.94
5632 7730 2.424302 CCTTCACGGTTCCCACGT 59.576 61.111 0.00 0.00 46.82 4.49
5633 7731 1.666872 CCTTCACGGTTCCCACGTC 60.667 63.158 0.00 0.00 43.58 4.34
5634 7732 1.666872 CTTCACGGTTCCCACGTCC 60.667 63.158 0.00 0.00 43.58 4.79
5635 7733 2.372040 CTTCACGGTTCCCACGTCCA 62.372 60.000 0.00 0.00 43.58 4.02
5636 7734 1.760479 TTCACGGTTCCCACGTCCAT 61.760 55.000 0.00 0.00 43.58 3.41
5637 7735 0.899253 TCACGGTTCCCACGTCCATA 60.899 55.000 0.00 0.00 43.58 2.74
5638 7736 0.037139 CACGGTTCCCACGTCCATAA 60.037 55.000 0.00 0.00 43.58 1.90
5639 7737 0.906775 ACGGTTCCCACGTCCATAAT 59.093 50.000 0.00 0.00 41.25 1.28
5640 7738 1.134610 ACGGTTCCCACGTCCATAATC 60.135 52.381 0.00 0.00 41.25 1.75
5641 7739 1.134640 CGGTTCCCACGTCCATAATCA 60.135 52.381 0.00 0.00 0.00 2.57
5642 7740 2.285977 GGTTCCCACGTCCATAATCAC 58.714 52.381 0.00 0.00 0.00 3.06
5643 7741 1.931172 GTTCCCACGTCCATAATCACG 59.069 52.381 0.00 0.00 41.90 4.35
5644 7742 0.179094 TCCCACGTCCATAATCACGC 60.179 55.000 0.00 0.00 39.73 5.34
5645 7743 1.487452 CCCACGTCCATAATCACGCG 61.487 60.000 3.53 3.53 39.73 6.01
5646 7744 0.804544 CCACGTCCATAATCACGCGT 60.805 55.000 5.58 5.58 39.73 6.01
5647 7745 0.570734 CACGTCCATAATCACGCGTC 59.429 55.000 9.86 0.00 39.73 5.19
5648 7746 0.454600 ACGTCCATAATCACGCGTCT 59.545 50.000 9.86 0.00 39.73 4.18
5649 7747 1.135199 ACGTCCATAATCACGCGTCTT 60.135 47.619 9.86 8.97 39.73 3.01
5650 7748 1.517276 CGTCCATAATCACGCGTCTTC 59.483 52.381 9.86 0.00 0.00 2.87
5651 7749 2.794981 CGTCCATAATCACGCGTCTTCT 60.795 50.000 9.86 0.00 0.00 2.85
5652 7750 3.187700 GTCCATAATCACGCGTCTTCTT 58.812 45.455 9.86 2.87 0.00 2.52
5653 7751 3.243177 GTCCATAATCACGCGTCTTCTTC 59.757 47.826 9.86 0.00 0.00 2.87
5654 7752 2.540101 CCATAATCACGCGTCTTCTTCC 59.460 50.000 9.86 0.00 0.00 3.46
5655 7753 3.448686 CATAATCACGCGTCTTCTTCCT 58.551 45.455 9.86 0.00 0.00 3.36
5656 7754 1.997669 AATCACGCGTCTTCTTCCTC 58.002 50.000 9.86 0.00 0.00 3.71
5657 7755 0.888619 ATCACGCGTCTTCTTCCTCA 59.111 50.000 9.86 0.00 0.00 3.86
5658 7756 0.888619 TCACGCGTCTTCTTCCTCAT 59.111 50.000 9.86 0.00 0.00 2.90
5659 7757 1.272490 TCACGCGTCTTCTTCCTCATT 59.728 47.619 9.86 0.00 0.00 2.57
5660 7758 1.391485 CACGCGTCTTCTTCCTCATTG 59.609 52.381 9.86 0.00 0.00 2.82
5661 7759 1.002366 CGCGTCTTCTTCCTCATTGG 58.998 55.000 0.00 0.00 37.10 3.16
5662 7760 0.729690 GCGTCTTCTTCCTCATTGGC 59.270 55.000 0.00 0.00 35.26 4.52
5663 7761 1.677217 GCGTCTTCTTCCTCATTGGCT 60.677 52.381 0.00 0.00 35.26 4.75
5664 7762 2.005451 CGTCTTCTTCCTCATTGGCTG 58.995 52.381 0.00 0.00 35.26 4.85
5665 7763 2.613977 CGTCTTCTTCCTCATTGGCTGT 60.614 50.000 0.00 0.00 35.26 4.40
5666 7764 3.006247 GTCTTCTTCCTCATTGGCTGTC 58.994 50.000 0.00 0.00 35.26 3.51
5667 7765 2.005451 CTTCTTCCTCATTGGCTGTCG 58.995 52.381 0.00 0.00 35.26 4.35
5668 7766 0.976641 TCTTCCTCATTGGCTGTCGT 59.023 50.000 0.00 0.00 35.26 4.34
5669 7767 1.081892 CTTCCTCATTGGCTGTCGTG 58.918 55.000 0.00 0.00 35.26 4.35
5670 7768 0.321564 TTCCTCATTGGCTGTCGTGG 60.322 55.000 0.00 0.00 35.26 4.94
5671 7769 1.746615 CCTCATTGGCTGTCGTGGG 60.747 63.158 0.00 0.00 0.00 4.61
5672 7770 1.746615 CTCATTGGCTGTCGTGGGG 60.747 63.158 0.00 0.00 0.00 4.96
5673 7771 2.751436 CATTGGCTGTCGTGGGGG 60.751 66.667 0.00 0.00 0.00 5.40
5674 7772 2.933287 ATTGGCTGTCGTGGGGGA 60.933 61.111 0.00 0.00 0.00 4.81
5675 7773 2.308722 ATTGGCTGTCGTGGGGGAT 61.309 57.895 0.00 0.00 0.00 3.85
5676 7774 2.556840 ATTGGCTGTCGTGGGGGATG 62.557 60.000 0.00 0.00 0.00 3.51
5677 7775 3.399181 GGCTGTCGTGGGGGATGA 61.399 66.667 0.00 0.00 0.00 2.92
5678 7776 2.668632 GCTGTCGTGGGGGATGAA 59.331 61.111 0.00 0.00 0.00 2.57
5679 7777 1.224592 GCTGTCGTGGGGGATGAAT 59.775 57.895 0.00 0.00 0.00 2.57
5680 7778 1.097547 GCTGTCGTGGGGGATGAATG 61.098 60.000 0.00 0.00 0.00 2.67
5681 7779 0.464373 CTGTCGTGGGGGATGAATGG 60.464 60.000 0.00 0.00 0.00 3.16
5682 7780 0.912006 TGTCGTGGGGGATGAATGGA 60.912 55.000 0.00 0.00 0.00 3.41
5683 7781 0.474184 GTCGTGGGGGATGAATGGAT 59.526 55.000 0.00 0.00 0.00 3.41
5684 7782 0.764890 TCGTGGGGGATGAATGGATC 59.235 55.000 0.00 0.00 0.00 3.36
5685 7783 0.473755 CGTGGGGGATGAATGGATCA 59.526 55.000 0.00 0.00 43.67 2.92
5686 7784 1.544093 CGTGGGGGATGAATGGATCAG 60.544 57.143 0.00 0.00 42.53 2.90
5687 7785 1.151760 TGGGGGATGAATGGATCAGG 58.848 55.000 0.00 0.00 42.53 3.86
5688 7786 1.346360 TGGGGGATGAATGGATCAGGA 60.346 52.381 0.00 0.00 42.53 3.86
5689 7787 1.782752 GGGGGATGAATGGATCAGGAA 59.217 52.381 0.00 0.00 42.53 3.36
5690 7788 2.224967 GGGGGATGAATGGATCAGGAAG 60.225 54.545 0.00 0.00 42.53 3.46
5691 7789 2.512705 GGGATGAATGGATCAGGAAGC 58.487 52.381 0.00 0.00 42.53 3.86
5692 7790 2.107901 GGGATGAATGGATCAGGAAGCT 59.892 50.000 0.00 0.00 42.53 3.74
5693 7791 3.147629 GGATGAATGGATCAGGAAGCTG 58.852 50.000 0.00 0.00 42.53 4.24
5694 7792 2.048444 TGAATGGATCAGGAAGCTGC 57.952 50.000 0.00 0.00 33.04 5.25
5695 7793 1.316651 GAATGGATCAGGAAGCTGCC 58.683 55.000 0.73 0.73 0.00 4.85
5696 7794 0.465097 AATGGATCAGGAAGCTGCCG 60.465 55.000 4.63 0.00 0.00 5.69
5697 7795 2.899339 GGATCAGGAAGCTGCCGC 60.899 66.667 4.63 0.00 0.00 6.53
5698 7796 2.899339 GATCAGGAAGCTGCCGCC 60.899 66.667 4.63 0.00 36.60 6.13
5699 7797 4.845580 ATCAGGAAGCTGCCGCCG 62.846 66.667 4.63 0.00 36.60 6.46
5743 7841 4.479993 CCCCCGCTCAAGAGGCTG 62.480 72.222 0.00 0.00 33.34 4.85
5747 7845 4.093291 CGCTCAAGAGGCTGCCCT 62.093 66.667 16.57 9.52 46.74 5.19
5748 7846 2.354343 GCTCAAGAGGCTGCCCTT 59.646 61.111 16.57 15.18 43.12 3.95
5749 7847 2.045131 GCTCAAGAGGCTGCCCTTG 61.045 63.158 28.98 28.98 43.12 3.61
5750 7848 2.034687 TCAAGAGGCTGCCCTTGC 59.965 61.111 29.56 14.68 43.12 4.01
5767 7865 2.743928 CAGTTCCTGCTGCCCGAC 60.744 66.667 0.00 0.00 0.00 4.79
5768 7866 3.241530 AGTTCCTGCTGCCCGACA 61.242 61.111 0.00 0.00 0.00 4.35
5769 7867 3.050275 GTTCCTGCTGCCCGACAC 61.050 66.667 0.00 0.00 0.00 3.67
5770 7868 4.329545 TTCCTGCTGCCCGACACC 62.330 66.667 0.00 0.00 0.00 4.16
5772 7870 4.415150 CCTGCTGCCCGACACCAT 62.415 66.667 0.00 0.00 0.00 3.55
5773 7871 2.821366 CTGCTGCCCGACACCATC 60.821 66.667 0.00 0.00 0.00 3.51
5774 7872 4.408821 TGCTGCCCGACACCATCC 62.409 66.667 0.00 0.00 0.00 3.51
5776 7874 4.838152 CTGCCCGACACCATCCCG 62.838 72.222 0.00 0.00 0.00 5.14
5778 7876 3.861797 GCCCGACACCATCCCGAT 61.862 66.667 0.00 0.00 0.00 4.18
5779 7877 2.421739 CCCGACACCATCCCGATC 59.578 66.667 0.00 0.00 0.00 3.69
5780 7878 2.134287 CCCGACACCATCCCGATCT 61.134 63.158 0.00 0.00 0.00 2.75
5781 7879 1.364171 CCGACACCATCCCGATCTC 59.636 63.158 0.00 0.00 0.00 2.75
5782 7880 1.364171 CGACACCATCCCGATCTCC 59.636 63.158 0.00 0.00 0.00 3.71
5783 7881 1.391933 CGACACCATCCCGATCTCCA 61.392 60.000 0.00 0.00 0.00 3.86
5784 7882 0.105039 GACACCATCCCGATCTCCAC 59.895 60.000 0.00 0.00 0.00 4.02
5785 7883 1.338136 ACACCATCCCGATCTCCACC 61.338 60.000 0.00 0.00 0.00 4.61
5786 7884 1.050988 CACCATCCCGATCTCCACCT 61.051 60.000 0.00 0.00 0.00 4.00
5787 7885 0.760945 ACCATCCCGATCTCCACCTC 60.761 60.000 0.00 0.00 0.00 3.85
5788 7886 0.470833 CCATCCCGATCTCCACCTCT 60.471 60.000 0.00 0.00 0.00 3.69
5789 7887 0.965439 CATCCCGATCTCCACCTCTC 59.035 60.000 0.00 0.00 0.00 3.20
5790 7888 0.856982 ATCCCGATCTCCACCTCTCT 59.143 55.000 0.00 0.00 0.00 3.10
5791 7889 0.106469 TCCCGATCTCCACCTCTCTG 60.106 60.000 0.00 0.00 0.00 3.35
5792 7890 1.112315 CCCGATCTCCACCTCTCTGG 61.112 65.000 0.00 0.00 42.93 3.86
5801 7899 2.581354 CCTCTCTGGTCAAGGCCG 59.419 66.667 0.00 0.00 0.00 6.13
5802 7900 2.286523 CCTCTCTGGTCAAGGCCGT 61.287 63.158 0.00 0.00 0.00 5.68
5803 7901 1.216710 CTCTCTGGTCAAGGCCGTC 59.783 63.158 0.00 0.00 0.00 4.79
5804 7902 2.125912 CTCTGGTCAAGGCCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
5805 7903 3.649277 CTCTGGTCAAGGCCGTCGG 62.649 68.421 6.99 6.99 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.535102 AGGCTTTTACACGCAGCTGT 60.535 50.000 16.64 0.00 33.76 4.40
93 94 3.069300 GGTGCATGCTCTTCTCTGATCTA 59.931 47.826 20.33 0.00 0.00 1.98
308 310 9.431887 GTGCTAACTTATCGGAAATATATCCAA 57.568 33.333 0.00 0.00 39.61 3.53
450 2406 2.039216 TCACGATTACACCAACCCACAT 59.961 45.455 0.00 0.00 0.00 3.21
518 2474 7.220030 CAGCCTAATCTACACATAACATTCCT 58.780 38.462 0.00 0.00 0.00 3.36
595 2551 0.534873 GCCAACCTCTCACTCTCCTC 59.465 60.000 0.00 0.00 0.00 3.71
596 2552 0.907230 GGCCAACCTCTCACTCTCCT 60.907 60.000 0.00 0.00 0.00 3.69
597 2553 1.194781 TGGCCAACCTCTCACTCTCC 61.195 60.000 0.61 0.00 36.63 3.71
598 2554 0.908198 ATGGCCAACCTCTCACTCTC 59.092 55.000 10.96 0.00 36.63 3.20
599 2555 1.280421 GAATGGCCAACCTCTCACTCT 59.720 52.381 10.96 0.00 36.63 3.24
600 2556 1.003580 TGAATGGCCAACCTCTCACTC 59.996 52.381 10.96 0.00 36.63 3.51
601 2557 1.067295 TGAATGGCCAACCTCTCACT 58.933 50.000 10.96 0.00 36.63 3.41
602 2558 2.134789 ATGAATGGCCAACCTCTCAC 57.865 50.000 10.96 0.00 36.63 3.51
603 2559 2.905415 AATGAATGGCCAACCTCTCA 57.095 45.000 10.96 8.43 36.63 3.27
604 2560 4.098501 CCTAAAATGAATGGCCAACCTCTC 59.901 45.833 10.96 2.13 36.63 3.20
605 2561 4.026052 CCTAAAATGAATGGCCAACCTCT 58.974 43.478 10.96 0.00 36.63 3.69
606 2562 3.132824 CCCTAAAATGAATGGCCAACCTC 59.867 47.826 10.96 7.80 36.63 3.85
607 2563 3.106827 CCCTAAAATGAATGGCCAACCT 58.893 45.455 10.96 0.00 36.63 3.50
608 2564 2.419990 GCCCTAAAATGAATGGCCAACC 60.420 50.000 10.96 4.93 36.07 3.77
609 2565 2.738321 CGCCCTAAAATGAATGGCCAAC 60.738 50.000 10.96 8.09 38.92 3.77
610 2566 1.480137 CGCCCTAAAATGAATGGCCAA 59.520 47.619 10.96 0.00 38.92 4.52
611 2567 1.110442 CGCCCTAAAATGAATGGCCA 58.890 50.000 8.56 8.56 38.92 5.36
612 2568 0.389025 CCGCCCTAAAATGAATGGCC 59.611 55.000 0.00 0.00 38.92 5.36
613 2569 1.111277 ACCGCCCTAAAATGAATGGC 58.889 50.000 0.00 0.00 38.74 4.40
614 2570 3.447229 AGAAACCGCCCTAAAATGAATGG 59.553 43.478 0.00 0.00 0.00 3.16
615 2571 4.718940 AGAAACCGCCCTAAAATGAATG 57.281 40.909 0.00 0.00 0.00 2.67
616 2572 4.770010 TGAAGAAACCGCCCTAAAATGAAT 59.230 37.500 0.00 0.00 0.00 2.57
617 2573 4.145807 TGAAGAAACCGCCCTAAAATGAA 58.854 39.130 0.00 0.00 0.00 2.57
618 2574 3.757270 TGAAGAAACCGCCCTAAAATGA 58.243 40.909 0.00 0.00 0.00 2.57
619 2575 4.234574 GTTGAAGAAACCGCCCTAAAATG 58.765 43.478 0.00 0.00 32.13 2.32
620 2576 3.057806 CGTTGAAGAAACCGCCCTAAAAT 60.058 43.478 0.00 0.00 35.13 1.82
621 2577 2.291190 CGTTGAAGAAACCGCCCTAAAA 59.709 45.455 0.00 0.00 35.13 1.52
622 2578 1.874872 CGTTGAAGAAACCGCCCTAAA 59.125 47.619 0.00 0.00 35.13 1.85
623 2579 1.515081 CGTTGAAGAAACCGCCCTAA 58.485 50.000 0.00 0.00 35.13 2.69
624 2580 0.952010 GCGTTGAAGAAACCGCCCTA 60.952 55.000 0.00 0.00 35.13 3.53
625 2581 2.258726 GCGTTGAAGAAACCGCCCT 61.259 57.895 0.00 0.00 35.13 5.19
626 2582 2.254350 GCGTTGAAGAAACCGCCC 59.746 61.111 0.00 0.00 35.13 6.13
627 2583 2.127383 CGCGTTGAAGAAACCGCC 60.127 61.111 0.00 0.00 35.94 6.13
628 2584 2.795389 GCGCGTTGAAGAAACCGC 60.795 61.111 8.43 7.82 44.89 5.68
675 2632 9.681692 CATATTTTAAATGCGGATTTCATGAGA 57.318 29.630 18.71 0.00 33.63 3.27
691 2648 6.688073 TTTTGGCCCAGGTCATATTTTAAA 57.312 33.333 0.00 0.00 0.00 1.52
726 2687 1.515521 CGAGGTTTCAAGTGGCCCAC 61.516 60.000 5.50 5.50 34.10 4.61
879 2842 0.455295 GAGAGGTCGACAAGTCTGCG 60.455 60.000 18.91 0.00 0.00 5.18
894 2857 1.282570 GCGATCAGCGGAGAGAGAG 59.717 63.158 0.00 0.00 41.29 3.20
914 2877 4.110482 CACTGGTACGACAAGTAATAGGC 58.890 47.826 0.00 0.00 37.02 3.93
930 2897 2.515901 GGGGTTCACTGCACTGGT 59.484 61.111 0.00 0.00 0.00 4.00
1236 3203 1.108776 CAGGACATGCCCATGAAAGG 58.891 55.000 14.69 0.00 41.20 3.11
1273 3240 6.213600 AGGTACTATCAACATCAACAGGAGTT 59.786 38.462 0.00 0.00 36.02 3.01
1274 3241 5.721960 AGGTACTATCAACATCAACAGGAGT 59.278 40.000 0.00 0.00 36.02 3.85
1275 3242 6.227298 AGGTACTATCAACATCAACAGGAG 57.773 41.667 0.00 0.00 36.02 3.69
1276 3243 6.013725 ACAAGGTACTATCAACATCAACAGGA 60.014 38.462 0.00 0.00 38.49 3.86
1277 3244 6.173339 ACAAGGTACTATCAACATCAACAGG 58.827 40.000 0.00 0.00 38.49 4.00
1278 3245 7.672983 AACAAGGTACTATCAACATCAACAG 57.327 36.000 0.00 0.00 38.49 3.16
1279 3246 9.378551 GATAACAAGGTACTATCAACATCAACA 57.621 33.333 0.00 0.00 38.49 3.33
1280 3247 8.540492 CGATAACAAGGTACTATCAACATCAAC 58.460 37.037 0.00 0.00 38.49 3.18
1281 3248 8.255206 ACGATAACAAGGTACTATCAACATCAA 58.745 33.333 0.00 0.00 38.49 2.57
1282 3249 7.778083 ACGATAACAAGGTACTATCAACATCA 58.222 34.615 0.00 0.00 38.49 3.07
1283 3250 7.113124 CGACGATAACAAGGTACTATCAACATC 59.887 40.741 0.00 0.00 38.49 3.06
1284 3251 6.916387 CGACGATAACAAGGTACTATCAACAT 59.084 38.462 0.00 0.00 38.49 2.71
1285 3252 6.260377 CGACGATAACAAGGTACTATCAACA 58.740 40.000 0.00 0.00 38.49 3.33
1286 3253 5.684626 CCGACGATAACAAGGTACTATCAAC 59.315 44.000 0.00 0.00 38.49 3.18
1287 3254 5.589855 TCCGACGATAACAAGGTACTATCAA 59.410 40.000 0.00 0.00 38.49 2.57
1368 3335 2.969238 GTCGCTGTGCAGTGCAGT 60.969 61.111 20.42 0.00 40.08 4.40
1369 3336 2.664185 AGTCGCTGTGCAGTGCAG 60.664 61.111 20.42 9.23 40.08 4.41
1370 3337 2.968697 CAGTCGCTGTGCAGTGCA 60.969 61.111 15.37 15.37 38.74 4.57
1371 3338 4.380628 GCAGTCGCTGTGCAGTGC 62.381 66.667 8.58 8.58 40.86 4.40
1389 3356 4.218200 TCCCTACTTACGACAACGATTTCA 59.782 41.667 0.00 0.00 42.66 2.69
1411 3378 8.509690 GTCCCTGTTTAAGGTATAGTTTGTTTC 58.490 37.037 0.00 0.00 45.78 2.78
1561 3528 5.799936 AGACACAAAAATTTGAAGTCACACG 59.200 36.000 23.87 0.00 42.85 4.49
1579 3546 1.040646 AGCAGAGAAACGGAGACACA 58.959 50.000 0.00 0.00 0.00 3.72
1604 3571 1.609072 GTTGGAAGTCTGCCAAAGTCC 59.391 52.381 14.40 0.00 46.18 3.85
1611 3578 2.359975 CCCCGTTGGAAGTCTGCC 60.360 66.667 0.00 0.00 35.39 4.85
1669 3637 5.694910 GCTATCAATTGGATTCATTTGCTGG 59.305 40.000 5.42 0.00 37.44 4.85
1693 3661 5.877012 AGTTTGTGCTATACAGTTCCATCTG 59.123 40.000 0.00 0.00 41.10 2.90
1707 3675 0.250553 CCCGTGGGAAGTTTGTGCTA 60.251 55.000 0.00 0.00 37.50 3.49
1721 3689 0.034059 AAGTTCTGTCAGCTCCCGTG 59.966 55.000 0.00 0.00 0.00 4.94
1725 3693 8.499403 AAGAATTTATAAGTTCTGTCAGCTCC 57.501 34.615 20.23 0.00 35.03 4.70
1828 3798 7.231317 GCTGATCCAGAATTATGAACCCAATAA 59.769 37.037 0.54 0.00 32.44 1.40
1930 3901 1.201429 AGGCCCTCATGGAAACGTCT 61.201 55.000 0.00 0.00 35.39 4.18
2180 4151 8.757164 AAAAACGAAGTGATTGAAAGTTTTCT 57.243 26.923 6.21 0.00 45.00 2.52
2314 4285 5.929415 CAGAACCCTGAAGTAGAAGAAAGTC 59.071 44.000 0.00 0.00 43.02 3.01
2544 4515 8.892723 TCTCATAACAATAATCAACATCACACC 58.107 33.333 0.00 0.00 0.00 4.16
2569 4540 5.353123 TGCAGTTATAACAGACGGGAAATTC 59.647 40.000 17.65 0.00 0.00 2.17
2702 4677 1.410648 CCATCATTGTTGGGAGGGGAG 60.411 57.143 5.93 0.00 31.56 4.30
3103 5088 2.673368 CAGCCAAGGTTAACGTCAGATC 59.327 50.000 0.52 0.00 0.00 2.75
3119 5104 0.899717 GCCAAATTCCCTGACAGCCA 60.900 55.000 0.00 0.00 0.00 4.75
3494 5479 8.635765 ATCAGGAAACTACTAAGCAAATGAAA 57.364 30.769 0.00 0.00 40.21 2.69
3495 5480 8.635765 AATCAGGAAACTACTAAGCAAATGAA 57.364 30.769 0.00 0.00 40.21 2.57
3496 5481 8.103305 AGAATCAGGAAACTACTAAGCAAATGA 58.897 33.333 0.00 0.00 40.21 2.57
3546 5531 4.265073 AGAGTCAACATGGCTAATGGAAC 58.735 43.478 0.00 1.18 40.94 3.62
3944 5929 7.447545 GGAAACCAAAAGTACACTCTTCCTAAT 59.552 37.037 0.00 0.00 0.00 1.73
3982 5967 9.913310 TTCATCCATACATATAACCACAAAAGA 57.087 29.630 0.00 0.00 0.00 2.52
3998 5983 7.891561 AGATCTAGCTAACAGTTCATCCATAC 58.108 38.462 0.00 0.00 0.00 2.39
4137 6127 8.393671 TCAAACCGTGGTACAATAATTAAGTT 57.606 30.769 0.00 0.00 44.16 2.66
4192 6183 6.253727 CGTCAGGACTCACTGTTGAATTATAC 59.746 42.308 0.00 0.00 39.48 1.47
4452 6443 1.326852 GCAGTGATGCTCATCTTGACG 59.673 52.381 10.76 0.00 38.60 4.35
4467 6458 0.870393 ACAGATGCAAAGTCGCAGTG 59.130 50.000 0.00 0.00 46.99 3.66
4591 6582 9.571816 GGAGAGTGTACTAAGTACTACCATTAT 57.428 37.037 0.00 0.00 39.49 1.28
4753 6746 4.633126 GTGCTCTCAAATATCTTGTCTGCA 59.367 41.667 0.00 0.00 0.00 4.41
4998 7010 7.473511 GCATTCCCAGATAGTATCAGTTTAGGT 60.474 40.741 12.66 0.00 0.00 3.08
5084 7096 9.738832 GAGTAAATAAGTGAGAACTAGGATGAC 57.261 37.037 0.00 0.00 0.00 3.06
5098 7110 8.073355 ACGTCTTCACAAAGAGTAAATAAGTG 57.927 34.615 0.00 0.00 42.14 3.16
5161 7257 1.189524 ATGCATGCACTTGCCTTGGT 61.190 50.000 25.37 0.00 42.06 3.67
5322 7419 8.832735 GTTACTCCCTCCATCCCATAATATAAA 58.167 37.037 0.00 0.00 0.00 1.40
5519 7617 6.937436 ACTTGTTCCGACTGTAAGATTTTT 57.063 33.333 0.00 0.00 37.43 1.94
5520 7618 6.937436 AACTTGTTCCGACTGTAAGATTTT 57.063 33.333 0.00 0.00 37.43 1.82
5521 7619 6.987992 TGTAACTTGTTCCGACTGTAAGATTT 59.012 34.615 0.00 0.00 37.43 2.17
5522 7620 6.518493 TGTAACTTGTTCCGACTGTAAGATT 58.482 36.000 0.00 0.00 37.43 2.40
5523 7621 6.092955 TGTAACTTGTTCCGACTGTAAGAT 57.907 37.500 0.00 0.00 37.43 2.40
5524 7622 5.518848 TGTAACTTGTTCCGACTGTAAGA 57.481 39.130 0.00 0.00 37.43 2.10
5525 7623 5.050567 GGTTGTAACTTGTTCCGACTGTAAG 60.051 44.000 0.00 0.00 42.29 2.34
5526 7624 4.810491 GGTTGTAACTTGTTCCGACTGTAA 59.190 41.667 0.00 0.00 0.00 2.41
5527 7625 4.370917 GGTTGTAACTTGTTCCGACTGTA 58.629 43.478 0.00 0.00 0.00 2.74
5528 7626 3.200483 GGTTGTAACTTGTTCCGACTGT 58.800 45.455 0.00 0.00 0.00 3.55
5529 7627 2.220133 CGGTTGTAACTTGTTCCGACTG 59.780 50.000 5.72 0.00 40.29 3.51
5530 7628 2.476821 CGGTTGTAACTTGTTCCGACT 58.523 47.619 5.72 0.00 40.29 4.18
5531 7629 1.070376 GCGGTTGTAACTTGTTCCGAC 60.070 52.381 13.18 2.61 40.29 4.79
5532 7630 1.219646 GCGGTTGTAACTTGTTCCGA 58.780 50.000 13.18 0.00 40.29 4.55
5533 7631 0.938713 TGCGGTTGTAACTTGTTCCG 59.061 50.000 6.90 6.90 40.72 4.30
5534 7632 4.752661 TTATGCGGTTGTAACTTGTTCC 57.247 40.909 0.00 0.00 0.00 3.62
5535 7633 6.959311 CAGTATTATGCGGTTGTAACTTGTTC 59.041 38.462 0.00 0.00 0.00 3.18
5536 7634 6.128117 CCAGTATTATGCGGTTGTAACTTGTT 60.128 38.462 0.00 0.00 0.00 2.83
5537 7635 5.353123 CCAGTATTATGCGGTTGTAACTTGT 59.647 40.000 0.00 0.00 0.00 3.16
5538 7636 5.353123 ACCAGTATTATGCGGTTGTAACTTG 59.647 40.000 0.00 0.00 0.00 3.16
5539 7637 5.493809 ACCAGTATTATGCGGTTGTAACTT 58.506 37.500 0.00 0.00 0.00 2.66
5540 7638 5.093849 ACCAGTATTATGCGGTTGTAACT 57.906 39.130 0.00 0.00 0.00 2.24
5541 7639 5.114081 AGACCAGTATTATGCGGTTGTAAC 58.886 41.667 0.00 0.00 0.00 2.50
5542 7640 5.347620 AGACCAGTATTATGCGGTTGTAA 57.652 39.130 0.00 0.00 0.00 2.41
5543 7641 4.202182 GGAGACCAGTATTATGCGGTTGTA 60.202 45.833 0.00 0.00 0.00 2.41
5544 7642 3.431766 GGAGACCAGTATTATGCGGTTGT 60.432 47.826 0.00 0.00 0.00 3.32
5545 7643 3.131396 GGAGACCAGTATTATGCGGTTG 58.869 50.000 0.00 0.00 0.00 3.77
5546 7644 2.769663 TGGAGACCAGTATTATGCGGTT 59.230 45.455 0.00 0.00 0.00 4.44
5547 7645 2.365617 CTGGAGACCAGTATTATGCGGT 59.634 50.000 9.36 0.00 45.82 5.68
5548 7646 3.032017 CTGGAGACCAGTATTATGCGG 57.968 52.381 9.36 0.00 45.82 5.69
5559 7657 3.369052 CGGCTGTAAATTACTGGAGACCA 60.369 47.826 11.13 0.00 0.00 4.02
5560 7658 3.195661 CGGCTGTAAATTACTGGAGACC 58.804 50.000 11.13 4.04 0.00 3.85
5561 7659 3.118884 TCCGGCTGTAAATTACTGGAGAC 60.119 47.826 11.13 0.00 0.00 3.36
5562 7660 3.101437 TCCGGCTGTAAATTACTGGAGA 58.899 45.455 11.13 0.00 0.00 3.71
5563 7661 3.536956 TCCGGCTGTAAATTACTGGAG 57.463 47.619 11.13 0.00 0.00 3.86
5564 7662 4.406326 TGTATCCGGCTGTAAATTACTGGA 59.594 41.667 11.13 9.72 0.00 3.86
5565 7663 4.699637 TGTATCCGGCTGTAAATTACTGG 58.300 43.478 11.13 5.42 0.00 4.00
5566 7664 6.861065 ATTGTATCCGGCTGTAAATTACTG 57.139 37.500 0.00 5.26 0.00 2.74
5567 7665 7.012989 GGAAATTGTATCCGGCTGTAAATTACT 59.987 37.037 0.00 0.00 0.00 2.24
5568 7666 7.136772 GGAAATTGTATCCGGCTGTAAATTAC 58.863 38.462 0.00 0.00 0.00 1.89
5569 7667 7.266922 GGAAATTGTATCCGGCTGTAAATTA 57.733 36.000 0.00 0.00 0.00 1.40
5570 7668 6.144078 GGAAATTGTATCCGGCTGTAAATT 57.856 37.500 0.00 0.00 0.00 1.82
5571 7669 5.767816 GGAAATTGTATCCGGCTGTAAAT 57.232 39.130 0.00 0.00 0.00 1.40
5581 7679 7.432252 CAGAATTTACAAGCGGAAATTGTATCC 59.568 37.037 0.20 0.00 41.44 2.59
5582 7680 7.968405 ACAGAATTTACAAGCGGAAATTGTATC 59.032 33.333 0.20 0.00 41.44 2.24
5583 7681 7.826690 ACAGAATTTACAAGCGGAAATTGTAT 58.173 30.769 0.20 0.00 41.44 2.29
5584 7682 7.209471 ACAGAATTTACAAGCGGAAATTGTA 57.791 32.000 0.20 0.00 41.08 2.41
5585 7683 6.084326 ACAGAATTTACAAGCGGAAATTGT 57.916 33.333 0.20 0.00 43.15 2.71
5586 7684 5.572896 GGACAGAATTTACAAGCGGAAATTG 59.427 40.000 0.20 0.00 35.82 2.32
5587 7685 5.476945 AGGACAGAATTTACAAGCGGAAATT 59.523 36.000 0.00 0.00 37.83 1.82
5588 7686 5.010282 AGGACAGAATTTACAAGCGGAAAT 58.990 37.500 0.00 0.00 0.00 2.17
5589 7687 4.394729 AGGACAGAATTTACAAGCGGAAA 58.605 39.130 0.00 0.00 0.00 3.13
5590 7688 4.015872 AGGACAGAATTTACAAGCGGAA 57.984 40.909 0.00 0.00 0.00 4.30
5591 7689 3.695830 AGGACAGAATTTACAAGCGGA 57.304 42.857 0.00 0.00 0.00 5.54
5592 7690 3.127030 GGAAGGACAGAATTTACAAGCGG 59.873 47.826 0.00 0.00 0.00 5.52
5593 7691 3.127030 GGGAAGGACAGAATTTACAAGCG 59.873 47.826 0.00 0.00 0.00 4.68
5594 7692 3.444034 GGGGAAGGACAGAATTTACAAGC 59.556 47.826 0.00 0.00 0.00 4.01
5595 7693 4.923415 AGGGGAAGGACAGAATTTACAAG 58.077 43.478 0.00 0.00 0.00 3.16
5596 7694 5.163034 TGAAGGGGAAGGACAGAATTTACAA 60.163 40.000 0.00 0.00 0.00 2.41
5597 7695 4.352595 TGAAGGGGAAGGACAGAATTTACA 59.647 41.667 0.00 0.00 0.00 2.41
5598 7696 4.700692 GTGAAGGGGAAGGACAGAATTTAC 59.299 45.833 0.00 0.00 0.00 2.01
5599 7697 4.564821 CGTGAAGGGGAAGGACAGAATTTA 60.565 45.833 0.00 0.00 0.00 1.40
5600 7698 3.767711 GTGAAGGGGAAGGACAGAATTT 58.232 45.455 0.00 0.00 0.00 1.82
5601 7699 2.290323 CGTGAAGGGGAAGGACAGAATT 60.290 50.000 0.00 0.00 0.00 2.17
5602 7700 1.279271 CGTGAAGGGGAAGGACAGAAT 59.721 52.381 0.00 0.00 0.00 2.40
5603 7701 0.685097 CGTGAAGGGGAAGGACAGAA 59.315 55.000 0.00 0.00 0.00 3.02
5604 7702 1.192146 CCGTGAAGGGGAAGGACAGA 61.192 60.000 0.00 0.00 35.97 3.41
5605 7703 1.296715 CCGTGAAGGGGAAGGACAG 59.703 63.158 0.00 0.00 35.97 3.51
5606 7704 1.057851 AACCGTGAAGGGGAAGGACA 61.058 55.000 0.00 0.00 46.96 4.02
5607 7705 0.321387 GAACCGTGAAGGGGAAGGAC 60.321 60.000 0.00 0.00 46.96 3.85
5608 7706 1.486145 GGAACCGTGAAGGGGAAGGA 61.486 60.000 0.00 0.00 46.96 3.36
5609 7707 1.002502 GGAACCGTGAAGGGGAAGG 60.003 63.158 0.00 0.00 46.96 3.46
5610 7708 1.002502 GGGAACCGTGAAGGGGAAG 60.003 63.158 0.00 0.00 46.96 3.46
5611 7709 3.163503 GGGAACCGTGAAGGGGAA 58.836 61.111 0.00 0.00 46.96 3.97
5623 7721 1.931172 CGTGATTATGGACGTGGGAAC 59.069 52.381 0.00 0.00 0.00 3.62
5624 7722 1.741055 GCGTGATTATGGACGTGGGAA 60.741 52.381 0.00 0.00 37.89 3.97
5625 7723 0.179094 GCGTGATTATGGACGTGGGA 60.179 55.000 0.00 0.00 37.89 4.37
5626 7724 1.487452 CGCGTGATTATGGACGTGGG 61.487 60.000 0.00 0.00 41.29 4.61
5627 7725 1.924335 CGCGTGATTATGGACGTGG 59.076 57.895 0.00 0.00 41.29 4.94
5629 7727 0.454600 AGACGCGTGATTATGGACGT 59.545 50.000 20.70 0.00 37.89 4.34
5630 7728 1.517276 GAAGACGCGTGATTATGGACG 59.483 52.381 20.70 0.00 38.63 4.79
5631 7729 2.810650 AGAAGACGCGTGATTATGGAC 58.189 47.619 20.70 0.00 0.00 4.02
5632 7730 3.444916 GAAGAAGACGCGTGATTATGGA 58.555 45.455 20.70 0.00 0.00 3.41
5633 7731 2.540101 GGAAGAAGACGCGTGATTATGG 59.460 50.000 20.70 0.00 0.00 2.74
5634 7732 3.448686 AGGAAGAAGACGCGTGATTATG 58.551 45.455 20.70 0.00 0.00 1.90
5635 7733 3.130516 TGAGGAAGAAGACGCGTGATTAT 59.869 43.478 20.70 5.67 0.00 1.28
5636 7734 2.490509 TGAGGAAGAAGACGCGTGATTA 59.509 45.455 20.70 0.00 0.00 1.75
5637 7735 1.272490 TGAGGAAGAAGACGCGTGATT 59.728 47.619 20.70 11.94 0.00 2.57
5638 7736 0.888619 TGAGGAAGAAGACGCGTGAT 59.111 50.000 20.70 4.27 0.00 3.06
5639 7737 0.888619 ATGAGGAAGAAGACGCGTGA 59.111 50.000 20.70 0.00 0.00 4.35
5640 7738 1.391485 CAATGAGGAAGAAGACGCGTG 59.609 52.381 20.70 0.00 0.00 5.34
5641 7739 1.673033 CCAATGAGGAAGAAGACGCGT 60.673 52.381 13.85 13.85 41.22 6.01
5642 7740 1.002366 CCAATGAGGAAGAAGACGCG 58.998 55.000 3.53 3.53 41.22 6.01
5643 7741 0.729690 GCCAATGAGGAAGAAGACGC 59.270 55.000 0.00 0.00 41.22 5.19
5644 7742 2.005451 CAGCCAATGAGGAAGAAGACG 58.995 52.381 0.00 0.00 41.22 4.18
5645 7743 3.006247 GACAGCCAATGAGGAAGAAGAC 58.994 50.000 0.00 0.00 41.22 3.01
5646 7744 2.354103 CGACAGCCAATGAGGAAGAAGA 60.354 50.000 0.00 0.00 41.22 2.87
5647 7745 2.005451 CGACAGCCAATGAGGAAGAAG 58.995 52.381 0.00 0.00 41.22 2.85
5648 7746 1.347707 ACGACAGCCAATGAGGAAGAA 59.652 47.619 0.00 0.00 41.22 2.52
5649 7747 0.976641 ACGACAGCCAATGAGGAAGA 59.023 50.000 0.00 0.00 41.22 2.87
5650 7748 1.081892 CACGACAGCCAATGAGGAAG 58.918 55.000 0.00 0.00 41.22 3.46
5651 7749 0.321564 CCACGACAGCCAATGAGGAA 60.322 55.000 0.00 0.00 41.22 3.36
5652 7750 1.296392 CCACGACAGCCAATGAGGA 59.704 57.895 0.00 0.00 41.22 3.71
5653 7751 1.746615 CCCACGACAGCCAATGAGG 60.747 63.158 0.00 0.00 41.84 3.86
5654 7752 1.746615 CCCCACGACAGCCAATGAG 60.747 63.158 0.00 0.00 0.00 2.90
5655 7753 2.350895 CCCCACGACAGCCAATGA 59.649 61.111 0.00 0.00 0.00 2.57
5656 7754 2.556840 ATCCCCCACGACAGCCAATG 62.557 60.000 0.00 0.00 0.00 2.82
5657 7755 2.308722 ATCCCCCACGACAGCCAAT 61.309 57.895 0.00 0.00 0.00 3.16
5658 7756 2.933287 ATCCCCCACGACAGCCAA 60.933 61.111 0.00 0.00 0.00 4.52
5659 7757 3.716195 CATCCCCCACGACAGCCA 61.716 66.667 0.00 0.00 0.00 4.75
5660 7758 2.270874 ATTCATCCCCCACGACAGCC 62.271 60.000 0.00 0.00 0.00 4.85
5661 7759 1.097547 CATTCATCCCCCACGACAGC 61.098 60.000 0.00 0.00 0.00 4.40
5662 7760 0.464373 CCATTCATCCCCCACGACAG 60.464 60.000 0.00 0.00 0.00 3.51
5663 7761 0.912006 TCCATTCATCCCCCACGACA 60.912 55.000 0.00 0.00 0.00 4.35
5664 7762 0.474184 ATCCATTCATCCCCCACGAC 59.526 55.000 0.00 0.00 0.00 4.34
5665 7763 0.764890 GATCCATTCATCCCCCACGA 59.235 55.000 0.00 0.00 0.00 4.35
5666 7764 0.473755 TGATCCATTCATCCCCCACG 59.526 55.000 0.00 0.00 0.00 4.94
5667 7765 1.202976 CCTGATCCATTCATCCCCCAC 60.203 57.143 0.00 0.00 32.72 4.61
5668 7766 1.151760 CCTGATCCATTCATCCCCCA 58.848 55.000 0.00 0.00 32.72 4.96
5669 7767 1.449271 TCCTGATCCATTCATCCCCC 58.551 55.000 0.00 0.00 32.72 5.40
5670 7768 2.817087 GCTTCCTGATCCATTCATCCCC 60.817 54.545 0.00 0.00 32.72 4.81
5671 7769 2.107901 AGCTTCCTGATCCATTCATCCC 59.892 50.000 0.00 0.00 32.72 3.85
5672 7770 3.147629 CAGCTTCCTGATCCATTCATCC 58.852 50.000 0.00 0.00 41.77 3.51
5673 7771 2.553172 GCAGCTTCCTGATCCATTCATC 59.447 50.000 0.00 0.00 41.77 2.92
5674 7772 2.584236 GCAGCTTCCTGATCCATTCAT 58.416 47.619 0.00 0.00 41.77 2.57
5675 7773 1.409241 GGCAGCTTCCTGATCCATTCA 60.409 52.381 0.00 0.00 41.77 2.57
5676 7774 1.316651 GGCAGCTTCCTGATCCATTC 58.683 55.000 0.00 0.00 41.77 2.67
5677 7775 0.465097 CGGCAGCTTCCTGATCCATT 60.465 55.000 0.00 0.00 41.77 3.16
5678 7776 1.147824 CGGCAGCTTCCTGATCCAT 59.852 57.895 0.00 0.00 41.77 3.41
5679 7777 2.586245 CGGCAGCTTCCTGATCCA 59.414 61.111 0.00 0.00 41.77 3.41
5680 7778 2.899339 GCGGCAGCTTCCTGATCC 60.899 66.667 0.00 0.00 41.77 3.36
5681 7779 2.899339 GGCGGCAGCTTCCTGATC 60.899 66.667 9.17 0.00 41.77 2.92
5682 7780 4.845580 CGGCGGCAGCTTCCTGAT 62.846 66.667 10.53 0.00 41.77 2.90
5726 7824 4.479993 CAGCCTCTTGAGCGGGGG 62.480 72.222 0.00 0.00 34.64 5.40
5730 7828 3.618780 AAGGGCAGCCTCTTGAGCG 62.619 63.158 12.43 0.00 34.64 5.03
5731 7829 2.045131 CAAGGGCAGCCTCTTGAGC 61.045 63.158 26.83 5.34 41.94 4.26
5732 7830 2.045131 GCAAGGGCAGCCTCTTGAG 61.045 63.158 31.56 16.29 41.94 3.02
5733 7831 2.034687 GCAAGGGCAGCCTCTTGA 59.965 61.111 31.56 0.00 41.94 3.02
5751 7849 3.241530 TGTCGGGCAGCAGGAACT 61.242 61.111 0.00 0.00 43.88 3.01
5752 7850 3.050275 GTGTCGGGCAGCAGGAAC 61.050 66.667 0.00 0.00 0.00 3.62
5753 7851 4.329545 GGTGTCGGGCAGCAGGAA 62.330 66.667 6.95 0.00 44.44 3.36
5759 7857 4.838152 CGGGATGGTGTCGGGCAG 62.838 72.222 0.00 0.00 0.00 4.85
5761 7859 3.809374 GATCGGGATGGTGTCGGGC 62.809 68.421 0.00 0.00 0.00 6.13
5762 7860 2.088674 GAGATCGGGATGGTGTCGGG 62.089 65.000 0.00 0.00 0.00 5.14
5763 7861 1.364171 GAGATCGGGATGGTGTCGG 59.636 63.158 0.00 0.00 0.00 4.79
5764 7862 1.364171 GGAGATCGGGATGGTGTCG 59.636 63.158 0.00 0.00 0.00 4.35
5765 7863 0.105039 GTGGAGATCGGGATGGTGTC 59.895 60.000 0.00 0.00 0.00 3.67
5766 7864 1.338136 GGTGGAGATCGGGATGGTGT 61.338 60.000 0.00 0.00 0.00 4.16
5767 7865 1.050988 AGGTGGAGATCGGGATGGTG 61.051 60.000 0.00 0.00 0.00 4.17
5768 7866 0.760945 GAGGTGGAGATCGGGATGGT 60.761 60.000 0.00 0.00 0.00 3.55
5769 7867 0.470833 AGAGGTGGAGATCGGGATGG 60.471 60.000 0.00 0.00 0.00 3.51
5770 7868 0.965439 GAGAGGTGGAGATCGGGATG 59.035 60.000 0.00 0.00 0.00 3.51
5771 7869 0.856982 AGAGAGGTGGAGATCGGGAT 59.143 55.000 0.00 0.00 0.00 3.85
5772 7870 0.106469 CAGAGAGGTGGAGATCGGGA 60.106 60.000 0.00 0.00 0.00 5.14
5773 7871 1.112315 CCAGAGAGGTGGAGATCGGG 61.112 65.000 0.00 0.00 40.44 5.14
5774 7872 2.424474 CCAGAGAGGTGGAGATCGG 58.576 63.158 0.00 0.00 40.44 4.18
5784 7882 2.232298 GACGGCCTTGACCAGAGAGG 62.232 65.000 0.00 0.00 45.67 3.69
5785 7883 1.216710 GACGGCCTTGACCAGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
5786 7884 2.636412 CGACGGCCTTGACCAGAGA 61.636 63.158 0.00 0.00 0.00 3.10
5787 7885 2.125912 CGACGGCCTTGACCAGAG 60.126 66.667 0.00 0.00 0.00 3.35
5788 7886 3.691342 CCGACGGCCTTGACCAGA 61.691 66.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.