Multiple sequence alignment - TraesCS1A01G145700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G145700 chr1A 100.000 2764 0 0 1 2764 251935266 251938029 0.000000e+00 5105.0
1 TraesCS1A01G145700 chr1A 87.464 686 68 8 1884 2555 15472298 15471617 0.000000e+00 774.0
2 TraesCS1A01G145700 chr1D 95.069 1967 56 9 815 2764 199671629 199673571 0.000000e+00 3057.0
3 TraesCS1A01G145700 chr1D 95.000 40 1 1 2570 2608 59820050 59820089 8.270000e-06 62.1
4 TraesCS1A01G145700 chr1D 92.857 42 1 1 2577 2618 73720036 73719997 2.970000e-05 60.2
5 TraesCS1A01G145700 chr1B 94.064 1095 27 7 815 1882 280209645 280210728 0.000000e+00 1628.0
6 TraesCS1A01G145700 chr1B 86.885 549 68 3 2 548 280193122 280193668 1.820000e-171 612.0
7 TraesCS1A01G145700 chr1B 81.463 205 34 4 2354 2556 4064966 4065168 6.120000e-37 165.0
8 TraesCS1A01G145700 chr6A 88.040 694 64 9 1885 2564 62604295 62603607 0.000000e+00 804.0
9 TraesCS1A01G145700 chr4D 86.483 688 74 9 1884 2556 424577471 424576788 0.000000e+00 737.0
10 TraesCS1A01G145700 chr4D 83.623 403 53 10 1883 2278 452559981 452559585 1.560000e-97 366.0
11 TraesCS1A01G145700 chr4D 100.000 31 0 0 2582 2612 3270907 3270877 1.070000e-04 58.4
12 TraesCS1A01G145700 chr5A 84.286 420 51 13 2146 2555 445202263 445202677 1.990000e-106 396.0
13 TraesCS1A01G145700 chr5A 80.576 417 50 14 2146 2547 650184177 650183777 2.690000e-75 292.0
14 TraesCS1A01G145700 chr5A 86.765 68 7 2 2573 2638 48897745 48897812 1.060000e-09 75.0
15 TraesCS1A01G145700 chr7D 83.042 401 55 10 1885 2278 614650565 614650959 4.380000e-93 351.0
16 TraesCS1A01G145700 chr2A 81.948 421 60 11 2146 2555 258985090 258985505 2.640000e-90 342.0
17 TraesCS1A01G145700 chr2A 81.750 400 61 10 1885 2278 696245267 696245660 9.550000e-85 324.0
18 TraesCS1A01G145700 chr2A 80.714 420 56 14 2146 2555 258939360 258939764 1.240000e-78 303.0
19 TraesCS1A01G145700 chr2A 90.476 210 20 0 2347 2556 221083839 221083630 7.540000e-71 278.0
20 TraesCS1A01G145700 chr2A 97.222 36 1 0 2577 2612 195771621 195771656 8.270000e-06 62.1
21 TraesCS1A01G145700 chr3B 81.776 428 55 11 2146 2556 528710171 528709750 1.230000e-88 337.0
22 TraesCS1A01G145700 chr6B 81.500 400 64 9 1885 2278 707216658 707217053 1.240000e-83 320.0
23 TraesCS1A01G145700 chr7B 81.612 397 59 11 1889 2278 6086628 6086239 1.600000e-82 316.0
24 TraesCS1A01G145700 chr6D 80.976 205 33 5 2354 2555 447101165 447100964 1.020000e-34 158.0
25 TraesCS1A01G145700 chr6D 87.931 58 4 3 2577 2633 22074351 22074296 6.390000e-07 65.8
26 TraesCS1A01G145700 chr6D 97.222 36 1 0 2577 2612 78338355 78338320 8.270000e-06 62.1
27 TraesCS1A01G145700 chr6D 97.222 36 1 0 2573 2608 392876867 392876902 8.270000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G145700 chr1A 251935266 251938029 2763 False 5105 5105 100.000 1 2764 1 chr1A.!!$F1 2763
1 TraesCS1A01G145700 chr1A 15471617 15472298 681 True 774 774 87.464 1884 2555 1 chr1A.!!$R1 671
2 TraesCS1A01G145700 chr1D 199671629 199673571 1942 False 3057 3057 95.069 815 2764 1 chr1D.!!$F2 1949
3 TraesCS1A01G145700 chr1B 280209645 280210728 1083 False 1628 1628 94.064 815 1882 1 chr1B.!!$F3 1067
4 TraesCS1A01G145700 chr1B 280193122 280193668 546 False 612 612 86.885 2 548 1 chr1B.!!$F2 546
5 TraesCS1A01G145700 chr6A 62603607 62604295 688 True 804 804 88.040 1885 2564 1 chr6A.!!$R1 679
6 TraesCS1A01G145700 chr4D 424576788 424577471 683 True 737 737 86.483 1884 2556 1 chr4D.!!$R2 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 547 0.029834 AAGCAACAGAAGCAGCAACG 59.97 50.0 0.0 0.0 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 1982 0.325203 AGTTGGGGGTGCAAGTTGTT 60.325 50.0 4.48 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.137484 TGTGCTGGCGTCTCATTAC 57.863 52.632 0.00 0.00 0.00 1.89
25 26 1.066430 TGGCGTCTCATTACTGAACCC 60.066 52.381 0.00 0.00 0.00 4.11
29 30 2.163815 CGTCTCATTACTGAACCCGAGT 59.836 50.000 0.00 0.00 0.00 4.18
34 35 5.011738 TCTCATTACTGAACCCGAGTCTTTT 59.988 40.000 0.00 0.00 0.00 2.27
35 36 4.994852 TCATTACTGAACCCGAGTCTTTTG 59.005 41.667 0.00 0.00 0.00 2.44
41 42 0.250338 ACCCGAGTCTTTTGTGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
67 68 3.103080 ACTCAAGGGTCGATACTTCCT 57.897 47.619 2.04 0.00 0.00 3.36
72 73 4.473477 AAGGGTCGATACTTCCTTGAAG 57.527 45.455 2.40 2.40 44.37 3.02
76 77 3.436496 GTCGATACTTCCTTGAAGGTCG 58.564 50.000 11.60 12.50 44.74 4.79
77 78 3.087031 TCGATACTTCCTTGAAGGTCGT 58.913 45.455 21.80 14.33 44.27 4.34
119 123 6.266103 AGCCAAGACCATATTATTTCACATGG 59.734 38.462 0.00 0.00 43.02 3.66
127 131 4.803329 ATTATTTCACATGGAGGAGCCT 57.197 40.909 0.00 0.00 37.63 4.58
138 142 1.909986 GGAGGAGCCTACTCTTTGGTT 59.090 52.381 3.46 0.00 42.98 3.67
155 159 1.559682 GGTTGTGAGCTTATCAGGGGA 59.440 52.381 0.00 0.00 39.07 4.81
158 162 0.107643 GTGAGCTTATCAGGGGAGCC 59.892 60.000 0.00 0.00 39.07 4.70
179 183 3.242492 ATGGGGCTGGCAATGGTGT 62.242 57.895 2.88 0.00 0.00 4.16
203 207 6.756074 GTCAAGATCAGAATACTTGAGGACAG 59.244 42.308 14.33 0.00 46.46 3.51
204 208 6.438741 TCAAGATCAGAATACTTGAGGACAGT 59.561 38.462 0.00 0.00 42.91 3.55
219 223 2.437413 GACAGTTGGATCCCAGGTTTC 58.563 52.381 9.90 0.00 33.81 2.78
242 246 3.806949 TCCAGGTACTTTCATGCCTTT 57.193 42.857 0.00 0.00 34.60 3.11
250 254 2.821969 ACTTTCATGCCTTTGCTACCAG 59.178 45.455 0.00 0.00 38.71 4.00
256 260 2.229792 TGCCTTTGCTACCAGTTTCTG 58.770 47.619 0.00 0.00 38.71 3.02
261 265 5.562890 GCCTTTGCTACCAGTTTCTGTTAAG 60.563 44.000 0.00 0.00 33.53 1.85
262 266 5.048713 CCTTTGCTACCAGTTTCTGTTAAGG 60.049 44.000 0.00 0.00 0.00 2.69
264 268 2.747989 GCTACCAGTTTCTGTTAAGGCC 59.252 50.000 0.00 0.00 0.00 5.19
291 295 5.048434 GGTTTAGTTTCTGCTTGATGCTTCT 60.048 40.000 0.88 0.00 43.37 2.85
294 298 5.118642 AGTTTCTGCTTGATGCTTCTTTC 57.881 39.130 0.88 0.00 43.37 2.62
295 299 4.826183 AGTTTCTGCTTGATGCTTCTTTCT 59.174 37.500 0.88 0.00 43.37 2.52
310 314 5.335504 GCTTCTTTCTTGACTTGGAATGAGG 60.336 44.000 0.00 0.00 30.94 3.86
312 316 5.940617 TCTTTCTTGACTTGGAATGAGGAA 58.059 37.500 0.00 0.00 0.00 3.36
333 337 7.259161 AGGAACTAGACTATAGTTTCTTTGCG 58.741 38.462 6.88 0.00 39.65 4.85
334 338 6.476053 GGAACTAGACTATAGTTTCTTTGCGG 59.524 42.308 6.88 0.00 37.83 5.69
343 347 3.222603 AGTTTCTTTGCGGAGACCATTT 58.777 40.909 0.00 0.00 0.00 2.32
359 363 7.391833 GGAGACCATTTCTGAACAAATACTTCT 59.608 37.037 0.00 0.00 33.22 2.85
360 364 8.103948 AGACCATTTCTGAACAAATACTTCTG 57.896 34.615 0.00 0.00 31.12 3.02
382 386 0.319728 CCTATCAGCCACGATGGAGG 59.680 60.000 8.04 2.32 40.96 4.30
415 419 4.272489 CTCTCATGGCCCTATGAAAAACA 58.728 43.478 0.00 0.00 36.69 2.83
417 421 2.752354 TCATGGCCCTATGAAAAACACG 59.248 45.455 0.00 0.00 34.32 4.49
418 422 1.540267 TGGCCCTATGAAAAACACGG 58.460 50.000 0.00 0.00 0.00 4.94
428 432 2.223144 TGAAAAACACGGCATCTTCTCG 59.777 45.455 0.00 0.00 0.00 4.04
445 449 3.744941 CGGTAATGTCCGGCTACAA 57.255 52.632 0.00 0.00 45.88 2.41
449 453 3.375922 CGGTAATGTCCGGCTACAATTTT 59.624 43.478 0.00 0.00 45.88 1.82
450 454 4.668289 GGTAATGTCCGGCTACAATTTTG 58.332 43.478 0.00 0.00 32.02 2.44
453 457 2.166829 TGTCCGGCTACAATTTTGCAT 58.833 42.857 0.00 0.00 0.00 3.96
457 461 2.094803 CCGGCTACAATTTTGCATGTGA 60.095 45.455 0.89 0.00 0.00 3.58
462 466 5.464168 GCTACAATTTTGCATGTGAGAGTT 58.536 37.500 0.89 0.00 0.00 3.01
465 469 7.042523 GCTACAATTTTGCATGTGAGAGTTTTT 60.043 33.333 0.89 0.00 0.00 1.94
471 475 6.455360 TTGCATGTGAGAGTTTTTCTTCTT 57.545 33.333 0.00 0.00 35.87 2.52
475 479 6.141369 GCATGTGAGAGTTTTTCTTCTTTTCG 59.859 38.462 0.00 0.00 35.87 3.46
476 480 6.119144 TGTGAGAGTTTTTCTTCTTTTCGG 57.881 37.500 0.00 0.00 35.87 4.30
495 499 4.513442 TCGGAAAGTGATAAAGGACATGG 58.487 43.478 0.00 0.00 0.00 3.66
496 500 4.019681 TCGGAAAGTGATAAAGGACATGGT 60.020 41.667 0.00 0.00 0.00 3.55
497 501 4.700213 CGGAAAGTGATAAAGGACATGGTT 59.300 41.667 0.00 0.00 0.00 3.67
498 502 5.183140 CGGAAAGTGATAAAGGACATGGTTT 59.817 40.000 0.00 0.00 0.00 3.27
499 503 6.389906 GGAAAGTGATAAAGGACATGGTTTG 58.610 40.000 0.00 0.00 0.00 2.93
500 504 6.015434 GGAAAGTGATAAAGGACATGGTTTGT 60.015 38.462 0.00 0.00 42.79 2.83
509 513 2.568623 ACATGGTTTGTCCTCTGACC 57.431 50.000 0.00 0.00 41.01 4.02
510 514 2.057922 ACATGGTTTGTCCTCTGACCT 58.942 47.619 0.00 0.00 41.01 3.85
511 515 2.443255 ACATGGTTTGTCCTCTGACCTT 59.557 45.455 0.00 0.00 41.01 3.50
512 516 2.930826 TGGTTTGTCCTCTGACCTTC 57.069 50.000 0.00 0.00 41.01 3.46
513 517 2.123589 TGGTTTGTCCTCTGACCTTCA 58.876 47.619 0.00 0.00 41.01 3.02
514 518 2.711009 TGGTTTGTCCTCTGACCTTCAT 59.289 45.455 0.00 0.00 41.01 2.57
515 519 3.244561 TGGTTTGTCCTCTGACCTTCATC 60.245 47.826 0.00 0.00 41.01 2.92
516 520 3.244561 GGTTTGTCCTCTGACCTTCATCA 60.245 47.826 0.00 0.00 41.01 3.07
517 521 3.969287 TTGTCCTCTGACCTTCATCAG 57.031 47.619 0.00 0.00 46.40 2.90
518 522 1.552337 TGTCCTCTGACCTTCATCAGC 59.448 52.381 0.00 0.00 44.94 4.26
519 523 1.552337 GTCCTCTGACCTTCATCAGCA 59.448 52.381 0.00 0.00 44.94 4.41
520 524 2.027745 GTCCTCTGACCTTCATCAGCAA 60.028 50.000 0.00 0.00 44.94 3.91
521 525 2.235650 TCCTCTGACCTTCATCAGCAAG 59.764 50.000 0.00 0.00 44.94 4.01
522 526 2.235650 CCTCTGACCTTCATCAGCAAGA 59.764 50.000 0.00 0.00 44.94 3.02
523 527 3.523547 CTCTGACCTTCATCAGCAAGAG 58.476 50.000 0.00 0.00 44.94 2.85
524 528 3.168292 TCTGACCTTCATCAGCAAGAGA 58.832 45.455 0.00 0.00 44.94 3.10
525 529 3.580022 TCTGACCTTCATCAGCAAGAGAA 59.420 43.478 0.00 0.00 44.94 2.87
526 530 3.933955 CTGACCTTCATCAGCAAGAGAAG 59.066 47.826 0.00 0.00 39.77 2.85
527 531 2.677337 GACCTTCATCAGCAAGAGAAGC 59.323 50.000 0.00 0.00 36.91 3.86
528 532 2.039480 ACCTTCATCAGCAAGAGAAGCA 59.961 45.455 0.00 0.00 36.91 3.91
529 533 3.079578 CCTTCATCAGCAAGAGAAGCAA 58.920 45.455 0.00 0.00 36.91 3.91
530 534 3.119919 CCTTCATCAGCAAGAGAAGCAAC 60.120 47.826 0.00 0.00 36.91 4.17
531 535 3.130280 TCATCAGCAAGAGAAGCAACA 57.870 42.857 0.00 0.00 0.00 3.33
532 536 3.072211 TCATCAGCAAGAGAAGCAACAG 58.928 45.455 0.00 0.00 0.00 3.16
533 537 2.916702 TCAGCAAGAGAAGCAACAGA 57.083 45.000 0.00 0.00 0.00 3.41
534 538 3.198409 TCAGCAAGAGAAGCAACAGAA 57.802 42.857 0.00 0.00 0.00 3.02
535 539 3.136763 TCAGCAAGAGAAGCAACAGAAG 58.863 45.455 0.00 0.00 0.00 2.85
536 540 1.878734 AGCAAGAGAAGCAACAGAAGC 59.121 47.619 0.00 0.00 0.00 3.86
537 541 1.605710 GCAAGAGAAGCAACAGAAGCA 59.394 47.619 0.00 0.00 0.00 3.91
538 542 2.350580 GCAAGAGAAGCAACAGAAGCAG 60.351 50.000 0.00 0.00 0.00 4.24
539 543 1.521580 AGAGAAGCAACAGAAGCAGC 58.478 50.000 0.00 0.00 0.00 5.25
540 544 1.202734 AGAGAAGCAACAGAAGCAGCA 60.203 47.619 0.00 0.00 0.00 4.41
541 545 1.605710 GAGAAGCAACAGAAGCAGCAA 59.394 47.619 0.00 0.00 0.00 3.91
542 546 1.336125 AGAAGCAACAGAAGCAGCAAC 59.664 47.619 0.00 0.00 0.00 4.17
543 547 0.029834 AAGCAACAGAAGCAGCAACG 59.970 50.000 0.00 0.00 0.00 4.10
544 548 1.370900 GCAACAGAAGCAGCAACGG 60.371 57.895 0.00 0.00 0.00 4.44
545 549 1.785041 GCAACAGAAGCAGCAACGGA 61.785 55.000 0.00 0.00 0.00 4.69
546 550 0.662619 CAACAGAAGCAGCAACGGAA 59.337 50.000 0.00 0.00 0.00 4.30
547 551 0.947244 AACAGAAGCAGCAACGGAAG 59.053 50.000 0.00 0.00 0.00 3.46
548 552 1.208614 CAGAAGCAGCAACGGAAGC 59.791 57.895 0.00 0.00 0.00 3.86
549 553 1.227943 AGAAGCAGCAACGGAAGCA 60.228 52.632 0.00 0.00 0.00 3.91
550 554 0.819259 AGAAGCAGCAACGGAAGCAA 60.819 50.000 0.00 0.00 0.00 3.91
551 555 0.661483 GAAGCAGCAACGGAAGCAAC 60.661 55.000 0.00 0.00 0.00 4.17
552 556 2.392613 AAGCAGCAACGGAAGCAACG 62.393 55.000 0.00 0.00 37.36 4.10
553 557 2.252260 CAGCAACGGAAGCAACGG 59.748 61.111 0.00 0.00 35.23 4.44
554 558 2.110213 AGCAACGGAAGCAACGGA 59.890 55.556 0.00 0.00 35.23 4.69
555 559 1.525077 AGCAACGGAAGCAACGGAA 60.525 52.632 0.00 0.00 35.23 4.30
556 560 1.082104 GCAACGGAAGCAACGGAAG 60.082 57.895 0.00 0.00 35.23 3.46
557 561 1.503818 GCAACGGAAGCAACGGAAGA 61.504 55.000 0.00 0.00 35.23 2.87
558 562 0.234884 CAACGGAAGCAACGGAAGAC 59.765 55.000 0.00 0.00 35.23 3.01
559 563 0.883370 AACGGAAGCAACGGAAGACC 60.883 55.000 0.00 0.00 35.23 3.85
560 564 1.301401 CGGAAGCAACGGAAGACCA 60.301 57.895 0.00 0.00 35.59 4.02
561 565 0.673644 CGGAAGCAACGGAAGACCAT 60.674 55.000 0.00 0.00 35.59 3.55
562 566 1.534729 GGAAGCAACGGAAGACCATT 58.465 50.000 0.00 0.00 35.59 3.16
563 567 1.886542 GGAAGCAACGGAAGACCATTT 59.113 47.619 0.00 0.00 35.59 2.32
564 568 2.351738 GGAAGCAACGGAAGACCATTTG 60.352 50.000 0.00 0.00 35.59 2.32
565 569 1.247567 AGCAACGGAAGACCATTTGG 58.752 50.000 0.00 0.00 42.17 3.28
566 570 0.388520 GCAACGGAAGACCATTTGGC 60.389 55.000 0.00 0.00 39.32 4.52
567 571 0.243636 CAACGGAAGACCATTTGGCC 59.756 55.000 0.00 0.00 39.32 5.36
568 572 0.112412 AACGGAAGACCATTTGGCCT 59.888 50.000 3.32 0.00 39.32 5.19
569 573 0.609131 ACGGAAGACCATTTGGCCTG 60.609 55.000 3.32 0.00 39.32 4.85
570 574 0.609131 CGGAAGACCATTTGGCCTGT 60.609 55.000 3.32 0.00 39.32 4.00
571 575 1.632589 GGAAGACCATTTGGCCTGTT 58.367 50.000 3.32 0.00 39.32 3.16
572 576 2.802719 GGAAGACCATTTGGCCTGTTA 58.197 47.619 3.32 0.00 39.32 2.41
573 577 3.161866 GGAAGACCATTTGGCCTGTTAA 58.838 45.455 3.32 0.00 39.32 2.01
574 578 3.056821 GGAAGACCATTTGGCCTGTTAAC 60.057 47.826 3.32 0.00 39.32 2.01
575 579 3.525800 AGACCATTTGGCCTGTTAACT 57.474 42.857 3.32 0.00 39.32 2.24
576 580 3.157087 AGACCATTTGGCCTGTTAACTG 58.843 45.455 3.32 6.33 39.32 3.16
577 581 2.890945 GACCATTTGGCCTGTTAACTGT 59.109 45.455 3.32 0.00 39.32 3.55
578 582 2.890945 ACCATTTGGCCTGTTAACTGTC 59.109 45.455 3.32 0.31 39.32 3.51
579 583 2.231235 CCATTTGGCCTGTTAACTGTCC 59.769 50.000 3.32 6.38 0.00 4.02
580 584 2.738587 TTTGGCCTGTTAACTGTCCA 57.261 45.000 10.77 10.77 0.00 4.02
581 585 2.738587 TTGGCCTGTTAACTGTCCAA 57.261 45.000 20.05 20.05 0.00 3.53
582 586 2.738587 TGGCCTGTTAACTGTCCAAA 57.261 45.000 12.22 0.00 0.00 3.28
583 587 3.237268 TGGCCTGTTAACTGTCCAAAT 57.763 42.857 12.22 0.00 0.00 2.32
584 588 4.374689 TGGCCTGTTAACTGTCCAAATA 57.625 40.909 12.22 0.00 0.00 1.40
585 589 4.730966 TGGCCTGTTAACTGTCCAAATAA 58.269 39.130 12.22 0.00 0.00 1.40
586 590 4.764823 TGGCCTGTTAACTGTCCAAATAAG 59.235 41.667 12.22 0.00 0.00 1.73
587 591 5.007682 GGCCTGTTAACTGTCCAAATAAGA 58.992 41.667 7.60 0.00 0.00 2.10
588 592 5.652452 GGCCTGTTAACTGTCCAAATAAGAT 59.348 40.000 7.60 0.00 0.00 2.40
589 593 6.404734 GGCCTGTTAACTGTCCAAATAAGATG 60.405 42.308 7.60 0.00 0.00 2.90
590 594 6.404734 GCCTGTTAACTGTCCAAATAAGATGG 60.405 42.308 7.22 0.00 39.41 3.51
591 595 6.884295 CCTGTTAACTGTCCAAATAAGATGGA 59.116 38.462 7.22 0.00 44.58 3.41
601 605 7.395190 TCCAAATAAGATGGAGATTGTTGTG 57.605 36.000 0.00 0.00 41.98 3.33
602 606 6.947733 TCCAAATAAGATGGAGATTGTTGTGT 59.052 34.615 0.00 0.00 41.98 3.72
603 607 7.121168 TCCAAATAAGATGGAGATTGTTGTGTC 59.879 37.037 0.00 0.00 41.98 3.67
604 608 6.668541 AATAAGATGGAGATTGTTGTGTCG 57.331 37.500 0.00 0.00 0.00 4.35
605 609 2.350522 AGATGGAGATTGTTGTGTCGC 58.649 47.619 0.00 0.00 0.00 5.19
606 610 1.061131 GATGGAGATTGTTGTGTCGCG 59.939 52.381 0.00 0.00 0.00 5.87
607 611 0.948623 TGGAGATTGTTGTGTCGCGG 60.949 55.000 6.13 0.00 0.00 6.46
608 612 1.635663 GGAGATTGTTGTGTCGCGGG 61.636 60.000 6.13 0.00 0.00 6.13
609 613 2.175811 GATTGTTGTGTCGCGGGC 59.824 61.111 6.13 0.00 0.00 6.13
610 614 2.281484 ATTGTTGTGTCGCGGGCT 60.281 55.556 6.13 0.00 0.00 5.19
611 615 2.513065 GATTGTTGTGTCGCGGGCTG 62.513 60.000 6.13 0.00 0.00 4.85
621 625 4.619140 GCGGGCTGCGCATGATTC 62.619 66.667 12.24 0.00 0.00 2.52
622 626 3.957535 CGGGCTGCGCATGATTCC 61.958 66.667 12.24 7.39 0.00 3.01
623 627 2.517875 GGGCTGCGCATGATTCCT 60.518 61.111 12.24 0.00 0.00 3.36
624 628 2.123428 GGGCTGCGCATGATTCCTT 61.123 57.895 12.24 0.00 0.00 3.36
625 629 0.819259 GGGCTGCGCATGATTCCTTA 60.819 55.000 12.24 0.00 0.00 2.69
626 630 0.308993 GGCTGCGCATGATTCCTTAC 59.691 55.000 12.24 0.00 0.00 2.34
627 631 0.308993 GCTGCGCATGATTCCTTACC 59.691 55.000 12.24 0.00 0.00 2.85
628 632 0.947244 CTGCGCATGATTCCTTACCC 59.053 55.000 12.24 0.00 0.00 3.69
629 633 0.254462 TGCGCATGATTCCTTACCCA 59.746 50.000 5.66 0.00 0.00 4.51
630 634 0.663153 GCGCATGATTCCTTACCCAC 59.337 55.000 0.30 0.00 0.00 4.61
631 635 1.747206 GCGCATGATTCCTTACCCACT 60.747 52.381 0.30 0.00 0.00 4.00
632 636 1.942657 CGCATGATTCCTTACCCACTG 59.057 52.381 0.00 0.00 0.00 3.66
633 637 2.301346 GCATGATTCCTTACCCACTGG 58.699 52.381 0.00 0.00 37.80 4.00
635 639 3.545703 CATGATTCCTTACCCACTGGTC 58.454 50.000 0.00 0.00 43.06 4.02
636 640 2.626785 TGATTCCTTACCCACTGGTCA 58.373 47.619 0.00 0.00 43.06 4.02
637 641 3.189606 TGATTCCTTACCCACTGGTCAT 58.810 45.455 0.00 0.00 43.06 3.06
638 642 3.199946 TGATTCCTTACCCACTGGTCATC 59.800 47.826 0.00 0.00 43.06 2.92
639 643 2.335681 TCCTTACCCACTGGTCATCA 57.664 50.000 0.00 0.00 43.06 3.07
640 644 2.626785 TCCTTACCCACTGGTCATCAA 58.373 47.619 0.00 0.00 43.06 2.57
641 645 3.189606 TCCTTACCCACTGGTCATCAAT 58.810 45.455 0.00 0.00 43.06 2.57
642 646 3.591527 TCCTTACCCACTGGTCATCAATT 59.408 43.478 0.00 0.00 43.06 2.32
643 647 3.696051 CCTTACCCACTGGTCATCAATTG 59.304 47.826 0.00 0.00 43.06 2.32
644 648 4.567537 CCTTACCCACTGGTCATCAATTGA 60.568 45.833 11.26 11.26 43.06 2.57
645 649 3.744940 ACCCACTGGTCATCAATTGAT 57.255 42.857 15.36 15.36 43.06 2.57
646 650 4.051661 ACCCACTGGTCATCAATTGATT 57.948 40.909 18.41 0.02 43.06 2.57
647 651 4.419282 ACCCACTGGTCATCAATTGATTT 58.581 39.130 18.41 0.00 43.06 2.17
648 652 5.579047 ACCCACTGGTCATCAATTGATTTA 58.421 37.500 18.41 7.14 43.06 1.40
649 653 6.197168 ACCCACTGGTCATCAATTGATTTAT 58.803 36.000 18.41 0.00 43.06 1.40
650 654 6.322201 ACCCACTGGTCATCAATTGATTTATC 59.678 38.462 18.41 10.48 43.06 1.75
651 655 6.432936 CCACTGGTCATCAATTGATTTATCG 58.567 40.000 18.41 7.24 36.54 2.92
652 656 5.911280 CACTGGTCATCAATTGATTTATCGC 59.089 40.000 18.41 5.41 36.54 4.58
653 657 5.009010 ACTGGTCATCAATTGATTTATCGCC 59.991 40.000 18.41 13.37 36.54 5.54
654 658 4.886489 TGGTCATCAATTGATTTATCGCCA 59.114 37.500 18.41 15.41 36.54 5.69
655 659 5.215160 GGTCATCAATTGATTTATCGCCAC 58.785 41.667 18.41 2.80 36.54 5.01
656 660 4.905866 GTCATCAATTGATTTATCGCCACG 59.094 41.667 18.41 3.72 36.54 4.94
657 661 4.574421 TCATCAATTGATTTATCGCCACGT 59.426 37.500 18.41 0.00 31.21 4.49
658 662 4.955925 TCAATTGATTTATCGCCACGTT 57.044 36.364 3.38 0.00 0.00 3.99
659 663 5.303747 TCAATTGATTTATCGCCACGTTT 57.696 34.783 3.38 0.00 0.00 3.60
660 664 5.704888 TCAATTGATTTATCGCCACGTTTT 58.295 33.333 3.38 0.00 0.00 2.43
661 665 6.153067 TCAATTGATTTATCGCCACGTTTTT 58.847 32.000 3.38 0.00 0.00 1.94
690 694 3.348795 CGATTGTCGTTTCTGTAACCG 57.651 47.619 0.00 0.00 34.72 4.44
691 695 2.981805 CGATTGTCGTTTCTGTAACCGA 59.018 45.455 0.00 0.00 34.72 4.69
692 696 3.059044 CGATTGTCGTTTCTGTAACCGAG 59.941 47.826 0.00 0.00 34.72 4.63
693 697 1.774639 TGTCGTTTCTGTAACCGAGC 58.225 50.000 0.00 0.00 32.92 5.03
694 698 1.067364 TGTCGTTTCTGTAACCGAGCA 59.933 47.619 0.00 0.00 32.92 4.26
695 699 1.719780 GTCGTTTCTGTAACCGAGCAG 59.280 52.381 0.00 0.00 32.92 4.24
696 700 1.610038 TCGTTTCTGTAACCGAGCAGA 59.390 47.619 0.00 0.00 39.66 4.26
697 701 1.986378 CGTTTCTGTAACCGAGCAGAG 59.014 52.381 0.00 0.00 41.93 3.35
698 702 1.727335 GTTTCTGTAACCGAGCAGAGC 59.273 52.381 0.00 0.00 41.93 4.09
699 703 0.966179 TTCTGTAACCGAGCAGAGCA 59.034 50.000 0.00 0.00 41.93 4.26
700 704 1.186200 TCTGTAACCGAGCAGAGCAT 58.814 50.000 0.00 0.00 36.89 3.79
701 705 1.134995 TCTGTAACCGAGCAGAGCATG 60.135 52.381 0.00 0.00 36.89 4.06
702 706 0.608130 TGTAACCGAGCAGAGCATGT 59.392 50.000 0.00 0.00 0.00 3.21
703 707 1.001974 TGTAACCGAGCAGAGCATGTT 59.998 47.619 0.00 0.00 0.00 2.71
704 708 1.394917 GTAACCGAGCAGAGCATGTTG 59.605 52.381 0.00 0.00 0.00 3.33
705 709 0.035317 AACCGAGCAGAGCATGTTGA 59.965 50.000 0.00 0.00 0.00 3.18
706 710 0.390866 ACCGAGCAGAGCATGTTGAG 60.391 55.000 0.00 0.00 0.00 3.02
707 711 1.703438 CCGAGCAGAGCATGTTGAGC 61.703 60.000 0.00 0.00 0.00 4.26
708 712 0.740164 CGAGCAGAGCATGTTGAGCT 60.740 55.000 5.22 5.22 46.82 4.09
716 720 3.191078 AGCATGTTGAGCTCCTATGTC 57.809 47.619 12.15 9.07 38.01 3.06
717 721 2.158842 AGCATGTTGAGCTCCTATGTCC 60.159 50.000 12.15 2.10 38.01 4.02
718 722 2.158842 GCATGTTGAGCTCCTATGTCCT 60.159 50.000 12.15 0.00 0.00 3.85
719 723 3.683847 GCATGTTGAGCTCCTATGTCCTT 60.684 47.826 12.15 0.00 0.00 3.36
720 724 4.521146 CATGTTGAGCTCCTATGTCCTTT 58.479 43.478 12.15 0.00 0.00 3.11
721 725 5.674525 CATGTTGAGCTCCTATGTCCTTTA 58.325 41.667 12.15 0.00 0.00 1.85
722 726 5.957771 TGTTGAGCTCCTATGTCCTTTAT 57.042 39.130 12.15 0.00 0.00 1.40
723 727 5.918608 TGTTGAGCTCCTATGTCCTTTATC 58.081 41.667 12.15 0.00 0.00 1.75
724 728 4.855715 TGAGCTCCTATGTCCTTTATCG 57.144 45.455 12.15 0.00 0.00 2.92
725 729 4.470602 TGAGCTCCTATGTCCTTTATCGA 58.529 43.478 12.15 0.00 0.00 3.59
726 730 4.893524 TGAGCTCCTATGTCCTTTATCGAA 59.106 41.667 12.15 0.00 0.00 3.71
727 731 5.362717 TGAGCTCCTATGTCCTTTATCGAAA 59.637 40.000 12.15 0.00 0.00 3.46
728 732 6.127168 TGAGCTCCTATGTCCTTTATCGAAAA 60.127 38.462 12.15 0.00 0.00 2.29
729 733 6.650120 AGCTCCTATGTCCTTTATCGAAAAA 58.350 36.000 0.00 0.00 0.00 1.94
730 734 7.283329 AGCTCCTATGTCCTTTATCGAAAAAT 58.717 34.615 0.00 0.00 0.00 1.82
731 735 7.227512 AGCTCCTATGTCCTTTATCGAAAAATG 59.772 37.037 0.00 0.00 0.00 2.32
732 736 7.012421 GCTCCTATGTCCTTTATCGAAAAATGT 59.988 37.037 0.00 0.00 0.00 2.71
733 737 8.433421 TCCTATGTCCTTTATCGAAAAATGTC 57.567 34.615 0.00 0.00 0.00 3.06
734 738 7.497909 TCCTATGTCCTTTATCGAAAAATGTCC 59.502 37.037 0.00 0.00 0.00 4.02
735 739 7.499232 CCTATGTCCTTTATCGAAAAATGTCCT 59.501 37.037 0.00 0.00 0.00 3.85
736 740 7.703058 ATGTCCTTTATCGAAAAATGTCCTT 57.297 32.000 0.00 0.00 0.00 3.36
737 741 7.519032 TGTCCTTTATCGAAAAATGTCCTTT 57.481 32.000 0.00 0.00 0.00 3.11
738 742 7.947282 TGTCCTTTATCGAAAAATGTCCTTTT 58.053 30.769 0.00 0.00 38.73 2.27
739 743 7.865385 TGTCCTTTATCGAAAAATGTCCTTTTG 59.135 33.333 0.00 0.00 37.14 2.44
740 744 6.866248 TCCTTTATCGAAAAATGTCCTTTTGC 59.134 34.615 0.00 0.00 37.14 3.68
741 745 6.090763 CCTTTATCGAAAAATGTCCTTTTGCC 59.909 38.462 0.00 0.00 37.14 4.52
742 746 3.378911 TCGAAAAATGTCCTTTTGCCC 57.621 42.857 0.00 0.00 37.14 5.36
743 747 2.695666 TCGAAAAATGTCCTTTTGCCCA 59.304 40.909 0.00 0.00 37.14 5.36
744 748 3.059166 CGAAAAATGTCCTTTTGCCCAG 58.941 45.455 0.00 0.00 37.14 4.45
745 749 3.492482 CGAAAAATGTCCTTTTGCCCAGT 60.492 43.478 0.00 0.00 37.14 4.00
746 750 3.751479 AAAATGTCCTTTTGCCCAGTC 57.249 42.857 0.00 0.00 35.71 3.51
747 751 1.247567 AATGTCCTTTTGCCCAGTCG 58.752 50.000 0.00 0.00 0.00 4.18
748 752 0.609131 ATGTCCTTTTGCCCAGTCGG 60.609 55.000 0.00 0.00 0.00 4.79
749 753 1.228154 GTCCTTTTGCCCAGTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
750 754 1.072505 TCCTTTTGCCCAGTCGGTC 59.927 57.895 0.00 0.00 0.00 4.79
751 755 1.073199 CCTTTTGCCCAGTCGGTCT 59.927 57.895 0.00 0.00 0.00 3.85
752 756 1.237285 CCTTTTGCCCAGTCGGTCTG 61.237 60.000 0.00 0.00 43.27 3.51
759 763 3.371021 CAGTCGGTCTGGAGCTGT 58.629 61.111 0.00 0.00 40.23 4.40
760 764 1.080230 CAGTCGGTCTGGAGCTGTG 60.080 63.158 0.00 0.00 40.23 3.66
761 765 1.531840 AGTCGGTCTGGAGCTGTGT 60.532 57.895 0.00 0.00 0.00 3.72
762 766 1.080434 GTCGGTCTGGAGCTGTGTC 60.080 63.158 0.00 0.00 0.00 3.67
763 767 1.530655 TCGGTCTGGAGCTGTGTCA 60.531 57.895 0.00 0.00 0.00 3.58
764 768 1.112916 TCGGTCTGGAGCTGTGTCAA 61.113 55.000 0.00 0.00 0.00 3.18
765 769 0.668706 CGGTCTGGAGCTGTGTCAAG 60.669 60.000 0.00 0.00 0.00 3.02
766 770 0.321122 GGTCTGGAGCTGTGTCAAGG 60.321 60.000 0.00 0.00 0.00 3.61
767 771 0.394565 GTCTGGAGCTGTGTCAAGGT 59.605 55.000 0.00 0.00 0.00 3.50
768 772 0.394192 TCTGGAGCTGTGTCAAGGTG 59.606 55.000 0.00 0.00 0.00 4.00
769 773 0.394192 CTGGAGCTGTGTCAAGGTGA 59.606 55.000 0.00 0.00 0.00 4.02
770 774 1.002888 CTGGAGCTGTGTCAAGGTGAT 59.997 52.381 0.00 0.00 0.00 3.06
771 775 2.234661 CTGGAGCTGTGTCAAGGTGATA 59.765 50.000 0.00 0.00 0.00 2.15
772 776 2.028112 TGGAGCTGTGTCAAGGTGATAC 60.028 50.000 0.00 0.00 38.72 2.24
773 777 2.028112 GGAGCTGTGTCAAGGTGATACA 60.028 50.000 7.48 7.48 44.40 2.29
774 778 3.557054 GGAGCTGTGTCAAGGTGATACAA 60.557 47.826 8.81 0.00 45.53 2.41
775 779 4.065088 GAGCTGTGTCAAGGTGATACAAA 58.935 43.478 8.81 0.00 45.53 2.83
776 780 4.460263 AGCTGTGTCAAGGTGATACAAAA 58.540 39.130 8.81 0.00 45.53 2.44
777 781 4.887071 AGCTGTGTCAAGGTGATACAAAAA 59.113 37.500 8.81 0.00 45.53 1.94
778 782 5.536161 AGCTGTGTCAAGGTGATACAAAAAT 59.464 36.000 8.81 0.00 45.53 1.82
779 783 6.040842 AGCTGTGTCAAGGTGATACAAAAATT 59.959 34.615 8.81 0.00 45.53 1.82
780 784 6.363357 GCTGTGTCAAGGTGATACAAAAATTC 59.637 38.462 8.81 0.00 45.53 2.17
781 785 7.581213 TGTGTCAAGGTGATACAAAAATTCT 57.419 32.000 5.48 0.00 43.80 2.40
782 786 7.648142 TGTGTCAAGGTGATACAAAAATTCTC 58.352 34.615 5.48 0.00 43.80 2.87
783 787 7.084486 GTGTCAAGGTGATACAAAAATTCTCC 58.916 38.462 0.81 0.00 38.23 3.71
784 788 7.004086 TGTCAAGGTGATACAAAAATTCTCCT 58.996 34.615 0.00 0.00 35.46 3.69
785 789 7.505585 TGTCAAGGTGATACAAAAATTCTCCTT 59.494 33.333 0.00 0.00 41.58 3.36
788 792 7.454260 AGGTGATACAAAAATTCTCCTTGAC 57.546 36.000 0.00 0.00 31.13 3.18
789 793 7.004086 AGGTGATACAAAAATTCTCCTTGACA 58.996 34.615 0.00 0.00 31.13 3.58
790 794 7.175641 AGGTGATACAAAAATTCTCCTTGACAG 59.824 37.037 0.00 0.00 31.13 3.51
791 795 7.174946 GGTGATACAAAAATTCTCCTTGACAGA 59.825 37.037 0.00 0.00 0.00 3.41
792 796 8.233190 GTGATACAAAAATTCTCCTTGACAGAG 58.767 37.037 0.00 0.00 0.00 3.35
793 797 5.444663 ACAAAAATTCTCCTTGACAGAGC 57.555 39.130 0.00 0.00 0.00 4.09
794 798 5.136105 ACAAAAATTCTCCTTGACAGAGCT 58.864 37.500 0.00 0.00 0.00 4.09
795 799 5.240403 ACAAAAATTCTCCTTGACAGAGCTC 59.760 40.000 5.27 5.27 0.00 4.09
796 800 3.625649 AATTCTCCTTGACAGAGCTCC 57.374 47.619 10.93 0.00 0.00 4.70
797 801 2.015456 TTCTCCTTGACAGAGCTCCA 57.985 50.000 10.93 0.00 0.00 3.86
798 802 2.244486 TCTCCTTGACAGAGCTCCAT 57.756 50.000 10.93 0.00 0.00 3.41
799 803 1.829849 TCTCCTTGACAGAGCTCCATG 59.170 52.381 10.93 5.69 0.00 3.66
800 804 1.829849 CTCCTTGACAGAGCTCCATGA 59.170 52.381 10.93 1.18 0.00 3.07
801 805 2.435069 CTCCTTGACAGAGCTCCATGAT 59.565 50.000 10.93 0.00 0.00 2.45
802 806 2.169978 TCCTTGACAGAGCTCCATGATG 59.830 50.000 10.93 4.04 0.00 3.07
803 807 1.941294 CTTGACAGAGCTCCATGATGC 59.059 52.381 10.93 0.00 0.00 3.91
804 808 0.906775 TGACAGAGCTCCATGATGCA 59.093 50.000 10.93 0.00 0.00 3.96
805 809 1.279846 TGACAGAGCTCCATGATGCAA 59.720 47.619 10.93 0.00 0.00 4.08
806 810 2.290450 TGACAGAGCTCCATGATGCAAA 60.290 45.455 10.93 0.00 0.00 3.68
807 811 2.751259 GACAGAGCTCCATGATGCAAAA 59.249 45.455 10.93 0.00 0.00 2.44
808 812 3.159472 ACAGAGCTCCATGATGCAAAAA 58.841 40.909 10.93 0.00 0.00 1.94
851 855 0.385974 CAAAGGCGCTTCAGGAAACG 60.386 55.000 7.64 0.76 0.00 3.60
900 904 1.400846 AGTGCACGTACCTATGTCTCG 59.599 52.381 12.01 0.00 0.00 4.04
954 958 2.604299 AAACGCTCCTAATCGCCCCC 62.604 60.000 0.00 0.00 0.00 5.40
1836 1865 9.858247 GAAATTACATTCTTCAATTATCGCGTA 57.142 29.630 5.77 0.00 0.00 4.42
1933 1962 6.531503 ACTTTCGATGGAGTCTAGATTTGA 57.468 37.500 0.00 0.00 0.00 2.69
1953 1982 1.042229 TCCCTCAACTTCGAAACCGA 58.958 50.000 0.00 0.00 0.00 4.69
1985 2014 1.280998 CCCCAACTACTGAAACCGGAT 59.719 52.381 9.46 0.00 0.00 4.18
2036 2065 2.224793 GGTTTTGGTGCTAACTCTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
2064 2093 3.007074 TGACCGGTGCTGACTTAAATACA 59.993 43.478 14.63 0.00 0.00 2.29
2271 2304 5.121768 GTGTACTGCTTTCAAATCCGTGTAT 59.878 40.000 0.00 0.00 0.00 2.29
2272 2305 5.703592 TGTACTGCTTTCAAATCCGTGTATT 59.296 36.000 0.00 0.00 0.00 1.89
2373 2417 3.565905 ACGGATTCGAAGAAAGTACGT 57.434 42.857 0.00 1.59 45.90 3.57
2391 2435 7.259290 AGTACGTGAATTTGAGTCAAAACAT 57.741 32.000 21.57 11.30 36.90 2.71
2395 2439 6.038825 ACGTGAATTTGAGTCAAAACATGGTA 59.961 34.615 29.84 10.87 36.90 3.25
2402 2446 9.829507 ATTTGAGTCAAAACATGGTAAAAATCA 57.170 25.926 21.57 0.00 36.90 2.57
2408 2453 7.170828 GTCAAAACATGGTAAAAATCAGGGAAC 59.829 37.037 0.00 0.00 0.00 3.62
2440 2485 1.203001 ACCGGTCAAAACCATGTCCAT 60.203 47.619 0.00 0.00 46.86 3.41
2504 2549 1.429463 CGGTTTCGAAGTTGAGGGAG 58.571 55.000 0.00 0.00 39.00 4.30
2532 2577 1.416401 AGACTCCGCCAAAAGTTGAGA 59.584 47.619 0.00 0.00 0.00 3.27
2533 2578 2.158813 AGACTCCGCCAAAAGTTGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
2569 2614 6.675987 ACTTTTCTCTTGCATCAATGAGTTC 58.324 36.000 0.00 0.00 0.00 3.01
2575 2620 4.453478 TCTTGCATCAATGAGTTCTGTGAC 59.547 41.667 0.00 0.00 0.00 3.67
2638 2683 5.174395 TCAACAACAAACAACATCCAAAGG 58.826 37.500 0.00 0.00 0.00 3.11
2663 2708 3.080300 AGTTCAAGGTCCAAACACACA 57.920 42.857 0.00 0.00 0.00 3.72
2665 2710 2.490115 GTTCAAGGTCCAAACACACACA 59.510 45.455 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.271800 GGTTCAGTAATGAGACGCCAG 58.728 52.381 0.00 0.00 0.00 4.85
13 14 4.755123 ACAAAAGACTCGGGTTCAGTAATG 59.245 41.667 0.00 0.00 0.00 1.90
18 19 1.264288 GCACAAAAGACTCGGGTTCAG 59.736 52.381 0.00 0.00 0.00 3.02
25 26 1.528586 CACTGGAGCACAAAAGACTCG 59.471 52.381 0.00 0.00 0.00 4.18
29 30 3.133901 TGAGTACACTGGAGCACAAAAGA 59.866 43.478 0.00 0.00 0.00 2.52
34 35 1.344438 CCTTGAGTACACTGGAGCACA 59.656 52.381 0.00 0.00 0.00 4.57
35 36 1.338200 CCCTTGAGTACACTGGAGCAC 60.338 57.143 0.00 0.00 0.00 4.40
41 42 3.695060 AGTATCGACCCTTGAGTACACTG 59.305 47.826 0.00 0.00 0.00 3.66
86 87 2.584835 ATGGTCTTGGCTTTGCTACA 57.415 45.000 0.00 0.00 0.00 2.74
87 88 6.884280 ATAATATGGTCTTGGCTTTGCTAC 57.116 37.500 0.00 0.00 0.00 3.58
119 123 2.303311 ACAACCAAAGAGTAGGCTCCTC 59.697 50.000 0.00 0.00 42.59 3.71
127 131 6.109156 TGATAAGCTCACAACCAAAGAGTA 57.891 37.500 0.00 0.00 0.00 2.59
138 142 0.833287 GCTCCCCTGATAAGCTCACA 59.167 55.000 0.00 0.00 33.23 3.58
158 162 3.221389 CATTGCCAGCCCCATCGG 61.221 66.667 0.00 0.00 0.00 4.18
160 164 2.042639 ACCATTGCCAGCCCCATC 60.043 61.111 0.00 0.00 0.00 3.51
167 171 2.422479 CTGATCTTGACACCATTGCCAG 59.578 50.000 0.00 0.00 0.00 4.85
171 175 7.335171 TCAAGTATTCTGATCTTGACACCATTG 59.665 37.037 12.81 0.00 41.33 2.82
179 183 6.438741 ACTGTCCTCAAGTATTCTGATCTTGA 59.561 38.462 14.73 14.73 43.09 3.02
203 207 2.447443 GAAGGAAACCTGGGATCCAAC 58.553 52.381 15.23 10.22 35.62 3.77
204 208 1.357761 GGAAGGAAACCTGGGATCCAA 59.642 52.381 15.23 0.00 35.62 3.53
242 246 3.408634 GCCTTAACAGAAACTGGTAGCA 58.591 45.455 0.00 0.00 34.96 3.49
250 254 4.600692 AAACCATGGCCTTAACAGAAAC 57.399 40.909 13.04 0.00 0.00 2.78
256 260 5.709966 CAGAAACTAAACCATGGCCTTAAC 58.290 41.667 13.04 0.00 0.00 2.01
261 265 2.171003 AGCAGAAACTAAACCATGGCC 58.829 47.619 13.04 0.00 0.00 5.36
262 266 3.255642 TCAAGCAGAAACTAAACCATGGC 59.744 43.478 13.04 0.00 0.00 4.40
264 268 4.860907 GCATCAAGCAGAAACTAAACCATG 59.139 41.667 0.00 0.00 44.79 3.66
291 295 5.694995 AGTTCCTCATTCCAAGTCAAGAAA 58.305 37.500 0.00 0.00 0.00 2.52
294 298 5.872070 GTCTAGTTCCTCATTCCAAGTCAAG 59.128 44.000 0.00 0.00 0.00 3.02
295 299 5.544176 AGTCTAGTTCCTCATTCCAAGTCAA 59.456 40.000 0.00 0.00 0.00 3.18
310 314 7.256286 TCCGCAAAGAAACTATAGTCTAGTTC 58.744 38.462 5.70 6.40 36.82 3.01
312 316 6.602406 TCTCCGCAAAGAAACTATAGTCTAGT 59.398 38.462 5.70 0.00 0.00 2.57
331 335 1.808411 TGTTCAGAAATGGTCTCCGC 58.192 50.000 0.00 0.00 32.70 5.54
333 337 7.391833 AGAAGTATTTGTTCAGAAATGGTCTCC 59.608 37.037 0.00 0.00 32.70 3.71
334 338 8.233190 CAGAAGTATTTGTTCAGAAATGGTCTC 58.767 37.037 0.00 0.00 32.70 3.36
343 347 8.981659 TGATAGGATCAGAAGTATTTGTTCAGA 58.018 33.333 0.00 0.00 33.59 3.27
359 363 1.620323 CCATCGTGGCTGATAGGATCA 59.380 52.381 0.00 0.00 37.76 2.92
360 364 1.895798 TCCATCGTGGCTGATAGGATC 59.104 52.381 0.00 0.00 37.47 3.36
373 377 1.132500 GAAATCCTCCCCTCCATCGT 58.868 55.000 0.00 0.00 0.00 3.73
415 419 1.480954 ACATTACCGAGAAGATGCCGT 59.519 47.619 0.00 0.00 0.00 5.68
417 421 2.484889 GGACATTACCGAGAAGATGCC 58.515 52.381 0.00 0.00 0.00 4.40
428 432 4.668289 CAAAATTGTAGCCGGACATTACC 58.332 43.478 5.05 0.00 0.00 2.85
438 442 4.082571 ACTCTCACATGCAAAATTGTAGCC 60.083 41.667 0.00 0.00 0.00 3.93
443 447 7.473027 AGAAAAACTCTCACATGCAAAATTG 57.527 32.000 0.00 0.00 0.00 2.32
445 449 7.495055 AGAAGAAAAACTCTCACATGCAAAAT 58.505 30.769 0.00 0.00 31.02 1.82
449 453 6.455360 AAAGAAGAAAAACTCTCACATGCA 57.545 33.333 0.00 0.00 31.02 3.96
450 454 6.141369 CGAAAAGAAGAAAAACTCTCACATGC 59.859 38.462 0.00 0.00 31.02 4.06
453 457 5.878116 TCCGAAAAGAAGAAAAACTCTCACA 59.122 36.000 0.00 0.00 31.02 3.58
457 461 7.120726 TCACTTTCCGAAAAGAAGAAAAACTCT 59.879 33.333 0.00 0.00 43.90 3.24
462 466 9.730420 CTTTATCACTTTCCGAAAAGAAGAAAA 57.270 29.630 0.00 2.64 43.90 2.29
465 469 7.172703 GTCCTTTATCACTTTCCGAAAAGAAGA 59.827 37.037 0.00 0.00 43.90 2.87
471 475 5.414454 CCATGTCCTTTATCACTTTCCGAAA 59.586 40.000 0.00 0.00 0.00 3.46
475 479 6.015434 ACAAACCATGTCCTTTATCACTTTCC 60.015 38.462 0.00 0.00 37.96 3.13
476 480 6.981722 ACAAACCATGTCCTTTATCACTTTC 58.018 36.000 0.00 0.00 37.96 2.62
495 499 3.999663 CTGATGAAGGTCAGAGGACAAAC 59.000 47.826 0.00 0.00 46.77 2.93
496 500 3.557898 GCTGATGAAGGTCAGAGGACAAA 60.558 47.826 8.01 0.00 46.77 2.83
497 501 2.027745 GCTGATGAAGGTCAGAGGACAA 60.028 50.000 8.01 0.00 46.77 3.18
498 502 1.552337 GCTGATGAAGGTCAGAGGACA 59.448 52.381 8.01 0.00 46.77 4.02
499 503 1.552337 TGCTGATGAAGGTCAGAGGAC 59.448 52.381 8.01 0.00 46.77 3.85
500 504 1.942776 TGCTGATGAAGGTCAGAGGA 58.057 50.000 8.01 0.00 46.77 3.71
501 505 2.235650 TCTTGCTGATGAAGGTCAGAGG 59.764 50.000 8.01 0.00 46.77 3.69
502 506 3.195182 TCTCTTGCTGATGAAGGTCAGAG 59.805 47.826 8.01 0.00 46.77 3.35
503 507 3.168292 TCTCTTGCTGATGAAGGTCAGA 58.832 45.455 8.01 0.00 46.77 3.27
504 508 3.606595 TCTCTTGCTGATGAAGGTCAG 57.393 47.619 0.00 0.00 46.59 3.51
505 509 3.867600 GCTTCTCTTGCTGATGAAGGTCA 60.868 47.826 0.00 0.00 37.12 4.02
506 510 2.677337 GCTTCTCTTGCTGATGAAGGTC 59.323 50.000 0.00 0.00 37.12 3.85
507 511 2.039480 TGCTTCTCTTGCTGATGAAGGT 59.961 45.455 0.00 0.00 37.12 3.50
508 512 2.708051 TGCTTCTCTTGCTGATGAAGG 58.292 47.619 0.00 0.00 37.12 3.46
509 513 3.501062 TGTTGCTTCTCTTGCTGATGAAG 59.499 43.478 0.00 0.00 38.96 3.02
510 514 3.479489 TGTTGCTTCTCTTGCTGATGAA 58.521 40.909 0.00 0.00 0.00 2.57
511 515 3.072211 CTGTTGCTTCTCTTGCTGATGA 58.928 45.455 0.00 0.00 0.00 2.92
512 516 3.072211 TCTGTTGCTTCTCTTGCTGATG 58.928 45.455 0.00 0.00 0.00 3.07
513 517 3.413846 TCTGTTGCTTCTCTTGCTGAT 57.586 42.857 0.00 0.00 0.00 2.90
514 518 2.916702 TCTGTTGCTTCTCTTGCTGA 57.083 45.000 0.00 0.00 0.00 4.26
515 519 2.350580 GCTTCTGTTGCTTCTCTTGCTG 60.351 50.000 0.00 0.00 0.00 4.41
516 520 1.878734 GCTTCTGTTGCTTCTCTTGCT 59.121 47.619 0.00 0.00 0.00 3.91
517 521 1.605710 TGCTTCTGTTGCTTCTCTTGC 59.394 47.619 0.00 0.00 0.00 4.01
518 522 2.350580 GCTGCTTCTGTTGCTTCTCTTG 60.351 50.000 0.00 0.00 0.00 3.02
519 523 1.878734 GCTGCTTCTGTTGCTTCTCTT 59.121 47.619 0.00 0.00 0.00 2.85
520 524 1.202734 TGCTGCTTCTGTTGCTTCTCT 60.203 47.619 0.00 0.00 0.00 3.10
521 525 1.233019 TGCTGCTTCTGTTGCTTCTC 58.767 50.000 0.00 0.00 0.00 2.87
522 526 1.336125 GTTGCTGCTTCTGTTGCTTCT 59.664 47.619 0.00 0.00 0.00 2.85
523 527 1.763634 GTTGCTGCTTCTGTTGCTTC 58.236 50.000 0.00 0.00 0.00 3.86
524 528 0.029834 CGTTGCTGCTTCTGTTGCTT 59.970 50.000 0.00 0.00 0.00 3.91
525 529 1.650912 CGTTGCTGCTTCTGTTGCT 59.349 52.632 0.00 0.00 0.00 3.91
526 530 1.370900 CCGTTGCTGCTTCTGTTGC 60.371 57.895 0.00 0.00 0.00 4.17
527 531 0.662619 TTCCGTTGCTGCTTCTGTTG 59.337 50.000 0.00 0.00 0.00 3.33
528 532 0.947244 CTTCCGTTGCTGCTTCTGTT 59.053 50.000 0.00 0.00 0.00 3.16
529 533 1.510480 GCTTCCGTTGCTGCTTCTGT 61.510 55.000 0.00 0.00 0.00 3.41
530 534 1.208614 GCTTCCGTTGCTGCTTCTG 59.791 57.895 0.00 0.00 0.00 3.02
531 535 0.819259 TTGCTTCCGTTGCTGCTTCT 60.819 50.000 0.00 0.00 0.00 2.85
532 536 0.661483 GTTGCTTCCGTTGCTGCTTC 60.661 55.000 0.00 0.00 0.00 3.86
533 537 1.360192 GTTGCTTCCGTTGCTGCTT 59.640 52.632 0.00 0.00 0.00 3.91
534 538 2.896801 CGTTGCTTCCGTTGCTGCT 61.897 57.895 0.00 0.00 0.00 4.24
535 539 2.427410 CGTTGCTTCCGTTGCTGC 60.427 61.111 0.00 0.00 0.00 5.25
536 540 1.781025 TTCCGTTGCTTCCGTTGCTG 61.781 55.000 0.00 0.00 0.00 4.41
537 541 1.507141 CTTCCGTTGCTTCCGTTGCT 61.507 55.000 0.00 0.00 0.00 3.91
538 542 1.082104 CTTCCGTTGCTTCCGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
539 543 0.234884 GTCTTCCGTTGCTTCCGTTG 59.765 55.000 0.00 0.00 0.00 4.10
540 544 0.883370 GGTCTTCCGTTGCTTCCGTT 60.883 55.000 0.00 0.00 0.00 4.44
541 545 1.301479 GGTCTTCCGTTGCTTCCGT 60.301 57.895 0.00 0.00 0.00 4.69
542 546 0.673644 ATGGTCTTCCGTTGCTTCCG 60.674 55.000 0.00 0.00 36.30 4.30
543 547 1.534729 AATGGTCTTCCGTTGCTTCC 58.465 50.000 0.00 0.00 40.97 3.46
544 548 2.351738 CCAAATGGTCTTCCGTTGCTTC 60.352 50.000 0.00 0.00 41.58 3.86
545 549 1.613437 CCAAATGGTCTTCCGTTGCTT 59.387 47.619 0.00 0.00 41.58 3.91
546 550 1.247567 CCAAATGGTCTTCCGTTGCT 58.752 50.000 0.00 0.00 41.58 3.91
547 551 0.388520 GCCAAATGGTCTTCCGTTGC 60.389 55.000 0.71 0.00 41.58 4.17
548 552 0.243636 GGCCAAATGGTCTTCCGTTG 59.756 55.000 0.00 0.00 41.58 4.10
549 553 2.653557 GGCCAAATGGTCTTCCGTT 58.346 52.632 0.00 0.00 43.99 4.44
550 554 4.415783 GGCCAAATGGTCTTCCGT 57.584 55.556 0.00 0.00 36.72 4.69
556 560 2.890945 ACAGTTAACAGGCCAAATGGTC 59.109 45.455 5.01 0.00 40.99 4.02
557 561 2.890945 GACAGTTAACAGGCCAAATGGT 59.109 45.455 5.01 0.00 37.57 3.55
558 562 2.231235 GGACAGTTAACAGGCCAAATGG 59.769 50.000 17.60 0.00 38.53 3.16
559 563 2.890311 TGGACAGTTAACAGGCCAAATG 59.110 45.455 22.38 4.50 37.63 2.32
560 564 3.237268 TGGACAGTTAACAGGCCAAAT 57.763 42.857 22.38 0.00 37.63 2.32
561 565 2.738587 TGGACAGTTAACAGGCCAAA 57.261 45.000 22.38 0.71 37.63 3.28
562 566 2.738587 TTGGACAGTTAACAGGCCAA 57.261 45.000 29.04 29.04 46.58 4.52
563 567 2.738587 TTTGGACAGTTAACAGGCCA 57.261 45.000 20.95 20.95 38.93 5.36
564 568 5.007682 TCTTATTTGGACAGTTAACAGGCC 58.992 41.667 15.80 15.80 0.00 5.19
565 569 6.404734 CCATCTTATTTGGACAGTTAACAGGC 60.405 42.308 8.61 1.00 36.26 4.85
566 570 6.884295 TCCATCTTATTTGGACAGTTAACAGG 59.116 38.462 8.61 1.97 38.35 4.00
567 571 7.824289 TCTCCATCTTATTTGGACAGTTAACAG 59.176 37.037 8.61 1.86 38.35 3.16
568 572 7.685481 TCTCCATCTTATTTGGACAGTTAACA 58.315 34.615 8.61 0.00 38.35 2.41
569 573 8.738645 ATCTCCATCTTATTTGGACAGTTAAC 57.261 34.615 0.00 0.00 38.35 2.01
570 574 9.177608 CAATCTCCATCTTATTTGGACAGTTAA 57.822 33.333 0.00 0.00 38.35 2.01
571 575 8.328758 ACAATCTCCATCTTATTTGGACAGTTA 58.671 33.333 0.00 0.00 38.35 2.24
572 576 7.177878 ACAATCTCCATCTTATTTGGACAGTT 58.822 34.615 0.00 0.00 38.35 3.16
573 577 6.725364 ACAATCTCCATCTTATTTGGACAGT 58.275 36.000 0.00 0.00 38.35 3.55
574 578 7.121759 ACAACAATCTCCATCTTATTTGGACAG 59.878 37.037 0.00 0.00 38.35 3.51
575 579 6.947733 ACAACAATCTCCATCTTATTTGGACA 59.052 34.615 0.00 0.00 38.35 4.02
576 580 7.094205 ACACAACAATCTCCATCTTATTTGGAC 60.094 37.037 0.00 0.00 38.35 4.02
577 581 6.947733 ACACAACAATCTCCATCTTATTTGGA 59.052 34.615 0.00 0.00 40.96 3.53
578 582 7.161773 ACACAACAATCTCCATCTTATTTGG 57.838 36.000 0.00 0.00 35.45 3.28
579 583 6.963242 CGACACAACAATCTCCATCTTATTTG 59.037 38.462 0.00 0.00 0.00 2.32
580 584 6.403636 GCGACACAACAATCTCCATCTTATTT 60.404 38.462 0.00 0.00 0.00 1.40
581 585 5.065218 GCGACACAACAATCTCCATCTTATT 59.935 40.000 0.00 0.00 0.00 1.40
582 586 4.572389 GCGACACAACAATCTCCATCTTAT 59.428 41.667 0.00 0.00 0.00 1.73
583 587 3.932710 GCGACACAACAATCTCCATCTTA 59.067 43.478 0.00 0.00 0.00 2.10
584 588 2.744202 GCGACACAACAATCTCCATCTT 59.256 45.455 0.00 0.00 0.00 2.40
585 589 2.350522 GCGACACAACAATCTCCATCT 58.649 47.619 0.00 0.00 0.00 2.90
586 590 1.061131 CGCGACACAACAATCTCCATC 59.939 52.381 0.00 0.00 0.00 3.51
587 591 1.078709 CGCGACACAACAATCTCCAT 58.921 50.000 0.00 0.00 0.00 3.41
588 592 0.948623 CCGCGACACAACAATCTCCA 60.949 55.000 8.23 0.00 0.00 3.86
589 593 1.635663 CCCGCGACACAACAATCTCC 61.636 60.000 8.23 0.00 0.00 3.71
590 594 1.787847 CCCGCGACACAACAATCTC 59.212 57.895 8.23 0.00 0.00 2.75
591 595 2.325082 GCCCGCGACACAACAATCT 61.325 57.895 8.23 0.00 0.00 2.40
592 596 2.175811 GCCCGCGACACAACAATC 59.824 61.111 8.23 0.00 0.00 2.67
593 597 2.281484 AGCCCGCGACACAACAAT 60.281 55.556 8.23 0.00 0.00 2.71
594 598 3.276091 CAGCCCGCGACACAACAA 61.276 61.111 8.23 0.00 0.00 2.83
609 613 0.947244 GGGTAAGGAATCATGCGCAG 59.053 55.000 18.32 8.46 0.00 5.18
610 614 0.254462 TGGGTAAGGAATCATGCGCA 59.746 50.000 14.96 14.96 0.00 6.09
611 615 0.663153 GTGGGTAAGGAATCATGCGC 59.337 55.000 0.00 0.00 0.00 6.09
612 616 1.942657 CAGTGGGTAAGGAATCATGCG 59.057 52.381 0.00 0.00 0.00 4.73
613 617 2.301346 CCAGTGGGTAAGGAATCATGC 58.699 52.381 0.00 0.00 0.00 4.06
620 624 9.396387 AATCAATTGATGACCAGTGGGTAAGGA 62.396 40.741 21.39 0.00 41.93 3.36
621 625 7.310058 AATCAATTGATGACCAGTGGGTAAGG 61.310 42.308 21.39 0.00 41.93 2.69
622 626 5.653769 AATCAATTGATGACCAGTGGGTAAG 59.346 40.000 21.39 0.00 41.93 2.34
623 627 5.579047 AATCAATTGATGACCAGTGGGTAA 58.421 37.500 21.39 0.00 41.93 2.85
624 628 5.191727 AATCAATTGATGACCAGTGGGTA 57.808 39.130 21.39 1.60 41.93 3.69
625 629 4.051661 AATCAATTGATGACCAGTGGGT 57.948 40.909 21.39 0.00 41.93 4.51
626 630 6.513884 CGATAAATCAATTGATGACCAGTGGG 60.514 42.308 21.39 2.44 41.93 4.61
627 631 6.432936 CGATAAATCAATTGATGACCAGTGG 58.567 40.000 21.39 7.91 41.93 4.00
628 632 5.911280 GCGATAAATCAATTGATGACCAGTG 59.089 40.000 21.39 9.65 41.93 3.66
629 633 5.009010 GGCGATAAATCAATTGATGACCAGT 59.991 40.000 21.39 1.92 41.93 4.00
630 634 5.008911 TGGCGATAAATCAATTGATGACCAG 59.991 40.000 21.39 13.67 41.93 4.00
631 635 4.886489 TGGCGATAAATCAATTGATGACCA 59.114 37.500 21.39 17.47 41.93 4.02
632 636 5.215160 GTGGCGATAAATCAATTGATGACC 58.785 41.667 21.39 15.45 41.93 4.02
633 637 4.905866 CGTGGCGATAAATCAATTGATGAC 59.094 41.667 21.39 11.21 41.93 3.06
634 638 4.574421 ACGTGGCGATAAATCAATTGATGA 59.426 37.500 21.39 12.95 43.67 2.92
635 639 4.847633 ACGTGGCGATAAATCAATTGATG 58.152 39.130 21.39 9.70 34.49 3.07
636 640 5.499139 AACGTGGCGATAAATCAATTGAT 57.501 34.783 15.36 15.36 36.07 2.57
637 641 4.955925 AACGTGGCGATAAATCAATTGA 57.044 36.364 11.26 11.26 0.00 2.57
638 642 6.388259 AAAAACGTGGCGATAAATCAATTG 57.612 33.333 0.00 0.00 0.00 2.32
678 682 1.727335 GCTCTGCTCGGTTACAGAAAC 59.273 52.381 0.00 0.00 42.12 2.78
679 683 1.343142 TGCTCTGCTCGGTTACAGAAA 59.657 47.619 0.00 0.00 42.12 2.52
680 684 0.966179 TGCTCTGCTCGGTTACAGAA 59.034 50.000 0.00 0.00 42.12 3.02
681 685 1.134995 CATGCTCTGCTCGGTTACAGA 60.135 52.381 0.00 0.00 40.54 3.41
682 686 1.284657 CATGCTCTGCTCGGTTACAG 58.715 55.000 0.00 0.00 35.15 2.74
683 687 0.608130 ACATGCTCTGCTCGGTTACA 59.392 50.000 0.00 0.00 0.00 2.41
684 688 1.394917 CAACATGCTCTGCTCGGTTAC 59.605 52.381 0.00 0.00 0.00 2.50
685 689 1.275010 TCAACATGCTCTGCTCGGTTA 59.725 47.619 0.00 0.00 0.00 2.85
686 690 0.035317 TCAACATGCTCTGCTCGGTT 59.965 50.000 0.00 0.00 0.00 4.44
687 691 0.390866 CTCAACATGCTCTGCTCGGT 60.391 55.000 0.00 0.00 0.00 4.69
688 692 1.703438 GCTCAACATGCTCTGCTCGG 61.703 60.000 0.00 0.00 0.00 4.63
689 693 0.740164 AGCTCAACATGCTCTGCTCG 60.740 55.000 0.00 0.00 35.67 5.03
690 694 3.156157 AGCTCAACATGCTCTGCTC 57.844 52.632 0.00 0.00 35.67 4.26
696 700 2.158842 GGACATAGGAGCTCAACATGCT 60.159 50.000 17.19 4.55 44.24 3.79
697 701 2.158842 AGGACATAGGAGCTCAACATGC 60.159 50.000 17.19 10.51 0.00 4.06
698 702 3.834489 AGGACATAGGAGCTCAACATG 57.166 47.619 17.19 16.36 0.00 3.21
699 703 4.851639 AAAGGACATAGGAGCTCAACAT 57.148 40.909 17.19 1.92 0.00 2.71
700 704 5.451937 CGATAAAGGACATAGGAGCTCAACA 60.452 44.000 17.19 0.00 0.00 3.33
701 705 4.985409 CGATAAAGGACATAGGAGCTCAAC 59.015 45.833 17.19 0.00 0.00 3.18
702 706 4.893524 TCGATAAAGGACATAGGAGCTCAA 59.106 41.667 17.19 2.88 0.00 3.02
703 707 4.470602 TCGATAAAGGACATAGGAGCTCA 58.529 43.478 17.19 0.00 0.00 4.26
704 708 5.455056 TTCGATAAAGGACATAGGAGCTC 57.545 43.478 4.71 4.71 0.00 4.09
705 709 5.871396 TTTCGATAAAGGACATAGGAGCT 57.129 39.130 0.00 0.00 0.00 4.09
706 710 6.920569 TTTTTCGATAAAGGACATAGGAGC 57.079 37.500 0.00 0.00 0.00 4.70
707 711 8.438676 ACATTTTTCGATAAAGGACATAGGAG 57.561 34.615 17.69 0.00 0.00 3.69
708 712 7.497909 GGACATTTTTCGATAAAGGACATAGGA 59.502 37.037 17.69 0.00 0.00 2.94
709 713 7.499232 AGGACATTTTTCGATAAAGGACATAGG 59.501 37.037 17.69 0.00 0.00 2.57
710 714 8.438676 AGGACATTTTTCGATAAAGGACATAG 57.561 34.615 17.69 1.03 0.00 2.23
711 715 8.801882 AAGGACATTTTTCGATAAAGGACATA 57.198 30.769 17.69 0.00 0.00 2.29
712 716 7.703058 AAGGACATTTTTCGATAAAGGACAT 57.297 32.000 17.69 8.11 0.00 3.06
713 717 7.519032 AAAGGACATTTTTCGATAAAGGACA 57.481 32.000 17.69 0.00 0.00 4.02
714 718 7.148804 GCAAAAGGACATTTTTCGATAAAGGAC 60.149 37.037 17.69 12.08 39.11 3.85
715 719 6.866248 GCAAAAGGACATTTTTCGATAAAGGA 59.134 34.615 17.69 0.00 39.11 3.36
716 720 6.090763 GGCAAAAGGACATTTTTCGATAAAGG 59.909 38.462 10.73 10.73 39.11 3.11
717 721 6.090763 GGGCAAAAGGACATTTTTCGATAAAG 59.909 38.462 7.13 2.74 39.11 1.85
718 722 5.929415 GGGCAAAAGGACATTTTTCGATAAA 59.071 36.000 3.47 3.47 39.11 1.40
719 723 5.011125 TGGGCAAAAGGACATTTTTCGATAA 59.989 36.000 0.00 0.00 39.11 1.75
720 724 4.524714 TGGGCAAAAGGACATTTTTCGATA 59.475 37.500 0.00 0.00 39.11 2.92
721 725 3.323403 TGGGCAAAAGGACATTTTTCGAT 59.677 39.130 0.00 0.00 39.11 3.59
722 726 2.695666 TGGGCAAAAGGACATTTTTCGA 59.304 40.909 0.00 0.00 39.11 3.71
723 727 3.059166 CTGGGCAAAAGGACATTTTTCG 58.941 45.455 0.00 0.00 39.11 3.46
724 728 4.058124 GACTGGGCAAAAGGACATTTTTC 58.942 43.478 0.00 0.00 39.11 2.29
725 729 3.492482 CGACTGGGCAAAAGGACATTTTT 60.492 43.478 0.00 0.00 39.11 1.94
726 730 2.035832 CGACTGGGCAAAAGGACATTTT 59.964 45.455 0.00 0.00 41.91 1.82
727 731 1.613437 CGACTGGGCAAAAGGACATTT 59.387 47.619 0.00 0.00 0.00 2.32
728 732 1.247567 CGACTGGGCAAAAGGACATT 58.752 50.000 0.00 0.00 0.00 2.71
729 733 0.609131 CCGACTGGGCAAAAGGACAT 60.609 55.000 0.00 0.00 0.00 3.06
730 734 1.228124 CCGACTGGGCAAAAGGACA 60.228 57.895 0.00 0.00 0.00 4.02
731 735 1.228154 ACCGACTGGGCAAAAGGAC 60.228 57.895 0.00 0.00 40.62 3.85
732 736 1.072505 GACCGACTGGGCAAAAGGA 59.927 57.895 0.00 0.00 45.78 3.36
733 737 3.668386 GACCGACTGGGCAAAAGG 58.332 61.111 0.00 0.00 45.78 3.11
742 746 1.080230 CACAGCTCCAGACCGACTG 60.080 63.158 0.00 3.25 45.36 3.51
743 747 1.528292 GACACAGCTCCAGACCGACT 61.528 60.000 0.00 0.00 0.00 4.18
744 748 1.080434 GACACAGCTCCAGACCGAC 60.080 63.158 0.00 0.00 0.00 4.79
745 749 1.112916 TTGACACAGCTCCAGACCGA 61.113 55.000 0.00 0.00 0.00 4.69
746 750 0.668706 CTTGACACAGCTCCAGACCG 60.669 60.000 0.00 0.00 0.00 4.79
747 751 0.321122 CCTTGACACAGCTCCAGACC 60.321 60.000 0.00 0.00 0.00 3.85
748 752 0.394565 ACCTTGACACAGCTCCAGAC 59.605 55.000 0.00 0.00 0.00 3.51
749 753 0.394192 CACCTTGACACAGCTCCAGA 59.606 55.000 0.00 0.00 0.00 3.86
750 754 0.394192 TCACCTTGACACAGCTCCAG 59.606 55.000 0.00 0.00 0.00 3.86
751 755 1.059098 ATCACCTTGACACAGCTCCA 58.941 50.000 0.00 0.00 0.00 3.86
752 756 2.028112 TGTATCACCTTGACACAGCTCC 60.028 50.000 0.00 0.00 27.40 4.70
753 757 3.319137 TGTATCACCTTGACACAGCTC 57.681 47.619 0.00 0.00 27.40 4.09
754 758 3.769739 TTGTATCACCTTGACACAGCT 57.230 42.857 0.00 0.00 35.01 4.24
755 759 4.829064 TTTTGTATCACCTTGACACAGC 57.171 40.909 0.00 0.00 35.01 4.40
756 760 7.651808 AGAATTTTTGTATCACCTTGACACAG 58.348 34.615 0.00 0.00 35.01 3.66
757 761 7.255451 GGAGAATTTTTGTATCACCTTGACACA 60.255 37.037 0.00 0.00 31.07 3.72
758 762 7.040409 AGGAGAATTTTTGTATCACCTTGACAC 60.040 37.037 0.00 0.00 31.23 3.67
759 763 7.004086 AGGAGAATTTTTGTATCACCTTGACA 58.996 34.615 0.00 0.00 31.23 3.58
760 764 7.454260 AGGAGAATTTTTGTATCACCTTGAC 57.546 36.000 0.00 0.00 31.23 3.18
763 767 7.505585 TGTCAAGGAGAATTTTTGTATCACCTT 59.494 33.333 0.00 0.00 42.47 3.50
764 768 7.004086 TGTCAAGGAGAATTTTTGTATCACCT 58.996 34.615 0.00 0.00 35.97 4.00
765 769 7.174946 TCTGTCAAGGAGAATTTTTGTATCACC 59.825 37.037 0.00 0.00 0.00 4.02
766 770 8.099364 TCTGTCAAGGAGAATTTTTGTATCAC 57.901 34.615 0.00 0.00 0.00 3.06
767 771 7.094634 GCTCTGTCAAGGAGAATTTTTGTATCA 60.095 37.037 0.00 0.00 33.03 2.15
768 772 7.120432 AGCTCTGTCAAGGAGAATTTTTGTATC 59.880 37.037 0.00 0.00 33.03 2.24
769 773 6.944862 AGCTCTGTCAAGGAGAATTTTTGTAT 59.055 34.615 0.00 0.00 33.03 2.29
770 774 6.299141 AGCTCTGTCAAGGAGAATTTTTGTA 58.701 36.000 0.00 0.00 33.03 2.41
771 775 5.136105 AGCTCTGTCAAGGAGAATTTTTGT 58.864 37.500 0.00 0.00 33.03 2.83
772 776 5.335504 GGAGCTCTGTCAAGGAGAATTTTTG 60.336 44.000 14.64 0.00 33.03 2.44
773 777 4.764308 GGAGCTCTGTCAAGGAGAATTTTT 59.236 41.667 14.64 0.00 33.03 1.94
774 778 4.202503 TGGAGCTCTGTCAAGGAGAATTTT 60.203 41.667 14.64 0.00 33.03 1.82
775 779 3.328931 TGGAGCTCTGTCAAGGAGAATTT 59.671 43.478 14.64 0.00 33.03 1.82
776 780 2.909006 TGGAGCTCTGTCAAGGAGAATT 59.091 45.455 14.64 0.00 33.03 2.17
777 781 2.544721 TGGAGCTCTGTCAAGGAGAAT 58.455 47.619 14.64 0.00 33.03 2.40
778 782 2.015456 TGGAGCTCTGTCAAGGAGAA 57.985 50.000 14.64 0.00 33.03 2.87
779 783 1.829849 CATGGAGCTCTGTCAAGGAGA 59.170 52.381 14.64 0.00 33.03 3.71
780 784 1.829849 TCATGGAGCTCTGTCAAGGAG 59.170 52.381 14.64 0.00 0.00 3.69
781 785 1.942776 TCATGGAGCTCTGTCAAGGA 58.057 50.000 14.64 3.25 0.00 3.36
782 786 2.562635 CATCATGGAGCTCTGTCAAGG 58.437 52.381 14.64 0.90 0.00 3.61
783 787 1.941294 GCATCATGGAGCTCTGTCAAG 59.059 52.381 14.64 0.36 0.00 3.02
784 788 1.279846 TGCATCATGGAGCTCTGTCAA 59.720 47.619 14.64 0.00 0.00 3.18
785 789 0.906775 TGCATCATGGAGCTCTGTCA 59.093 50.000 14.64 3.38 0.00 3.58
786 790 2.034104 TTGCATCATGGAGCTCTGTC 57.966 50.000 14.64 0.00 0.00 3.51
787 791 2.502142 TTTGCATCATGGAGCTCTGT 57.498 45.000 14.64 0.00 0.00 3.41
788 792 3.861276 TTTTTGCATCATGGAGCTCTG 57.139 42.857 14.64 5.04 0.00 3.35
805 809 1.153784 CGCGGCTGCATGGATTTTT 60.154 52.632 19.50 0.00 42.97 1.94
806 810 2.270297 GACGCGGCTGCATGGATTTT 62.270 55.000 19.50 0.00 42.97 1.82
807 811 2.751436 ACGCGGCTGCATGGATTT 60.751 55.556 19.50 0.00 42.97 2.17
808 812 3.204827 GACGCGGCTGCATGGATT 61.205 61.111 19.50 0.00 42.97 3.01
809 813 3.687321 AAGACGCGGCTGCATGGAT 62.687 57.895 19.28 0.00 42.97 3.41
810 814 4.393155 AAGACGCGGCTGCATGGA 62.393 61.111 19.28 0.00 42.97 3.41
811 815 3.869272 GAAGACGCGGCTGCATGG 61.869 66.667 19.28 3.56 42.97 3.66
812 816 3.869272 GGAAGACGCGGCTGCATG 61.869 66.667 24.54 4.39 42.97 4.06
900 904 0.107459 GTGGTGGAGAAGATGGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
954 958 0.821517 GGGCTTAACGGGGGAAAATG 59.178 55.000 0.00 0.00 0.00 2.32
1836 1865 5.170021 TCTAAATTAACATGCCGTACACGT 58.830 37.500 0.58 0.00 37.74 4.49
1844 1873 9.807649 ACATTCATTTCTCTAAATTAACATGCC 57.192 29.630 0.00 0.00 32.87 4.40
1933 1962 1.621814 TCGGTTTCGAAGTTGAGGGAT 59.378 47.619 0.00 0.00 43.03 3.85
1953 1982 0.325203 AGTTGGGGGTGCAAGTTGTT 60.325 50.000 4.48 0.00 0.00 2.83
1985 2014 2.108168 CGAGACCAGGGATGAACCTTA 58.892 52.381 0.00 0.00 39.34 2.69
2036 2065 1.098712 GTCAGCACCGGTCAAAACCA 61.099 55.000 2.59 0.00 46.86 3.67
2129 2162 9.561270 TGAATTTGAAATTTTCACGCGAATATA 57.439 25.926 15.93 0.00 39.87 0.86
2132 2165 6.580476 GTGAATTTGAAATTTTCACGCGAAT 58.420 32.000 15.93 6.21 39.67 3.34
2240 2273 6.073440 GGATTTGAAAGCAGTACACGAACTTA 60.073 38.462 0.00 0.00 0.00 2.24
2373 2417 9.658799 TTTTTACCATGTTTTGACTCAAATTCA 57.341 25.926 5.03 8.27 33.19 2.57
2391 2435 4.202377 TGTCGAGTTCCCTGATTTTTACCA 60.202 41.667 0.00 0.00 0.00 3.25
2395 2439 4.651778 TGATGTCGAGTTCCCTGATTTTT 58.348 39.130 0.00 0.00 0.00 1.94
2402 2446 2.779506 GGTTTTGATGTCGAGTTCCCT 58.220 47.619 0.00 0.00 0.00 4.20
2408 2453 1.790755 TGACCGGTTTTGATGTCGAG 58.209 50.000 9.42 0.00 0.00 4.04
2457 2502 6.619801 ACTTGCACCTTCAACTACTAAAAG 57.380 37.500 0.00 0.00 0.00 2.27
2504 2549 2.024176 TTGGCGGAGTCTAGATTTGC 57.976 50.000 0.00 0.13 0.00 3.68
2532 2577 9.959749 TGCAAGAGAAAAGTATATTTTTCGTTT 57.040 25.926 21.04 17.28 46.56 3.60
2638 2683 6.183360 TGTGTGTTTGGACCTTGAACTTTATC 60.183 38.462 0.00 0.00 0.00 1.75
2663 2708 7.392494 TTCTATATCTCTCGTGACTTGTTGT 57.608 36.000 0.00 0.00 0.00 3.32
2706 2751 9.002600 GCATTTGGATTTTCTTTTTCATTACCT 57.997 29.630 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.