Multiple sequence alignment - TraesCS1A01G144400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G144400 chr1A 100.000 2954 0 0 1 2954 250203786 250200833 0.000000e+00 5456.0
1 TraesCS1A01G144400 chr1D 89.937 2524 114 25 509 2954 199074318 199071857 0.000000e+00 3125.0
2 TraesCS1A01G144400 chr1D 87.228 368 37 4 1 358 199075308 199074941 7.620000e-111 411.0
3 TraesCS1A01G144400 chr1D 94.253 174 4 4 342 513 199074895 199074726 8.120000e-66 261.0
4 TraesCS1A01G144400 chr1B 89.733 2474 156 44 1 2431 279194161 279191743 0.000000e+00 3072.0
5 TraesCS1A01G144400 chr1B 88.041 485 51 5 2472 2954 279191418 279190939 4.270000e-158 568.0
6 TraesCS1A01G144400 chr2D 88.654 379 30 7 2576 2954 6967310 6966945 1.610000e-122 449.0
7 TraesCS1A01G144400 chr2D 87.668 373 39 4 2582 2954 106969031 106968666 7.570000e-116 427.0
8 TraesCS1A01G144400 chr2D 93.023 43 1 2 2394 2435 142092347 142092306 8.840000e-06 62.1
9 TraesCS1A01G144400 chr5D 87.435 382 37 7 2576 2954 527145809 527145436 2.100000e-116 429.0
10 TraesCS1A01G144400 chr5D 86.089 381 45 6 2575 2954 365079515 365079888 1.280000e-108 403.0
11 TraesCS1A01G144400 chr5D 86.207 377 44 5 2578 2954 346700327 346699959 4.590000e-108 401.0
12 TraesCS1A01G144400 chr7D 86.376 367 42 8 2575 2941 446926538 446926180 7.670000e-106 394.0
13 TraesCS1A01G144400 chr7D 87.273 55 5 2 2379 2432 27497288 27497235 8.840000e-06 62.1
14 TraesCS1A01G144400 chr4A 85.185 378 48 5 2577 2954 613371538 613371169 5.970000e-102 381.0
15 TraesCS1A01G144400 chr7B 85.079 382 45 9 2575 2954 453016863 453016492 2.150000e-101 379.0
16 TraesCS1A01G144400 chr6A 85.859 99 12 2 2474 2570 10594780 10594878 1.450000e-18 104.0
17 TraesCS1A01G144400 chr6B 84.694 98 13 2 2474 2569 17527062 17527159 2.420000e-16 97.1
18 TraesCS1A01G144400 chr7A 81.250 112 19 2 41 151 703570186 703570296 4.060000e-14 89.8
19 TraesCS1A01G144400 chr4B 88.136 59 7 0 2484 2542 100574519 100574577 1.470000e-08 71.3
20 TraesCS1A01G144400 chr4B 97.222 36 1 0 2398 2433 483511817 483511782 8.840000e-06 62.1
21 TraesCS1A01G144400 chr2A 95.000 40 1 1 2395 2433 570500097 570500058 8.840000e-06 62.1
22 TraesCS1A01G144400 chr2A 94.444 36 2 0 2474 2509 158552640 158552605 4.110000e-04 56.5
23 TraesCS1A01G144400 chr2B 97.222 36 0 1 2399 2433 440021237 440021202 3.180000e-05 60.2
24 TraesCS1A01G144400 chr4D 100.000 30 0 0 2404 2433 320593822 320593793 4.110000e-04 56.5
25 TraesCS1A01G144400 chr3D 92.105 38 2 1 2397 2433 406162494 406162531 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G144400 chr1A 250200833 250203786 2953 True 5456.000000 5456 100.000000 1 2954 1 chr1A.!!$R1 2953
1 TraesCS1A01G144400 chr1D 199071857 199075308 3451 True 1265.666667 3125 90.472667 1 2954 3 chr1D.!!$R1 2953
2 TraesCS1A01G144400 chr1B 279190939 279194161 3222 True 1820.000000 3072 88.887000 1 2954 2 chr1B.!!$R1 2953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 1405 0.028637 GGGTCTCGTCGTACGGAATC 59.971 60.0 16.52 3.26 42.81 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2514 0.310854 CTCCAAACGGCAGAAACCAC 59.689 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 138 3.747976 GGGCACCGGTGATGCAAC 61.748 66.667 38.30 18.50 45.27 4.17
146 149 3.044059 GATGCAACCGGTGAGCAGC 62.044 63.158 30.69 29.13 42.14 5.25
213 216 2.182825 GAGCGACGACATTACGACAAT 58.817 47.619 0.00 0.00 37.03 2.71
216 219 2.091588 GCGACGACATTACGACAATTGT 59.908 45.455 11.78 11.78 37.03 2.71
224 236 4.391830 ACATTACGACAATTGTTGCGAGAT 59.608 37.500 23.25 13.57 35.33 2.75
230 242 3.005554 ACAATTGTTGCGAGATGAGAGG 58.994 45.455 4.92 0.00 0.00 3.69
251 263 1.096416 AAACGAGTTTGTTTGCCGGA 58.904 45.000 5.05 0.00 40.40 5.14
287 307 1.067776 GGGGATCTTATAGCCACGTCG 60.068 57.143 0.00 0.00 34.26 5.12
307 327 2.581354 GAGGCATCTGACGGCTGT 59.419 61.111 4.02 0.00 39.76 4.40
340 360 1.591863 GTGACGCCCTATCTTCGCC 60.592 63.158 0.00 0.00 0.00 5.54
590 1088 6.028987 CGTCCAACGAAAAGAAAAGGTAAAA 58.971 36.000 0.00 0.00 46.05 1.52
591 1089 6.527372 CGTCCAACGAAAAGAAAAGGTAAAAA 59.473 34.615 0.00 0.00 46.05 1.94
592 1090 7.221259 CGTCCAACGAAAAGAAAAGGTAAAAAT 59.779 33.333 0.00 0.00 46.05 1.82
593 1091 8.537223 GTCCAACGAAAAGAAAAGGTAAAAATC 58.463 33.333 0.00 0.00 0.00 2.17
595 1093 9.040939 CCAACGAAAAGAAAAGGTAAAAATCAT 57.959 29.630 0.00 0.00 0.00 2.45
645 1143 3.429580 GCCCCTTAGCCCACCCAT 61.430 66.667 0.00 0.00 0.00 4.00
646 1144 2.603008 CCCCTTAGCCCACCCATG 59.397 66.667 0.00 0.00 0.00 3.66
647 1145 2.316586 CCCCTTAGCCCACCCATGT 61.317 63.158 0.00 0.00 0.00 3.21
648 1146 1.076777 CCCTTAGCCCACCCATGTG 60.077 63.158 0.00 0.00 42.39 3.21
649 1147 1.570857 CCCTTAGCCCACCCATGTGA 61.571 60.000 0.00 0.00 45.76 3.58
650 1148 0.331278 CCTTAGCCCACCCATGTGAA 59.669 55.000 0.00 0.00 45.76 3.18
651 1149 1.063717 CCTTAGCCCACCCATGTGAAT 60.064 52.381 0.00 0.00 45.76 2.57
652 1150 2.026641 CTTAGCCCACCCATGTGAATG 58.973 52.381 0.00 0.00 45.76 2.67
653 1151 0.395586 TAGCCCACCCATGTGAATGC 60.396 55.000 0.00 0.00 45.76 3.56
654 1152 1.683365 GCCCACCCATGTGAATGCT 60.683 57.895 0.00 0.00 45.76 3.79
655 1153 1.952102 GCCCACCCATGTGAATGCTG 61.952 60.000 0.00 0.00 45.76 4.41
656 1154 0.612732 CCCACCCATGTGAATGCTGT 60.613 55.000 0.00 0.00 45.76 4.40
657 1155 0.528924 CCACCCATGTGAATGCTGTG 59.471 55.000 0.00 0.00 45.76 3.66
658 1156 1.250328 CACCCATGTGAATGCTGTGT 58.750 50.000 0.00 0.00 45.76 3.72
659 1157 1.068125 CACCCATGTGAATGCTGTGTG 60.068 52.381 0.00 0.00 45.76 3.82
660 1158 1.250328 CCCATGTGAATGCTGTGTGT 58.750 50.000 0.00 0.00 0.00 3.72
661 1159 1.068125 CCCATGTGAATGCTGTGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
662 1160 1.068125 CCATGTGAATGCTGTGTGTGG 60.068 52.381 0.00 0.00 0.00 4.17
663 1161 1.068125 CATGTGAATGCTGTGTGTGGG 60.068 52.381 0.00 0.00 0.00 4.61
664 1162 0.106769 TGTGAATGCTGTGTGTGGGT 60.107 50.000 0.00 0.00 0.00 4.51
665 1163 0.593128 GTGAATGCTGTGTGTGGGTC 59.407 55.000 0.00 0.00 0.00 4.46
666 1164 0.884259 TGAATGCTGTGTGTGGGTCG 60.884 55.000 0.00 0.00 0.00 4.79
876 1405 0.028637 GGGTCTCGTCGTACGGAATC 59.971 60.000 16.52 3.26 42.81 2.52
917 1446 3.971702 GTTGCAGGGGCTGGAGGT 61.972 66.667 0.00 0.00 41.91 3.85
1013 1542 0.398381 GAGGAGATGGACCTGGAGCT 60.398 60.000 0.00 0.00 37.93 4.09
1028 1557 4.937431 GCTAGCGGTGATGGGGGC 62.937 72.222 0.00 0.00 0.00 5.80
1120 1649 3.256960 AACCAGCGGTGATGGGGT 61.257 61.111 17.83 1.20 44.23 4.95
1127 1656 2.786495 CGGTGATGGGGTCTCGGAG 61.786 68.421 0.00 0.00 0.00 4.63
1275 1804 2.203029 TGTGGCGTGCGGTACAAA 60.203 55.556 0.00 0.00 0.00 2.83
1303 1832 1.742768 CCGGAGTATGCACCCTCTC 59.257 63.158 12.70 7.35 0.00 3.20
1310 1839 2.042464 GTATGCACCCTCTCATCAGGA 58.958 52.381 0.00 0.00 35.20 3.86
1353 1882 3.640967 TGTTCCTTTTGGTCAGGGAATTG 59.359 43.478 0.00 0.00 39.57 2.32
1367 1896 2.252714 GGAATTGGGGTTGCTTGGTAA 58.747 47.619 0.00 0.00 0.00 2.85
1441 1970 0.105039 GGCGTTGGAGACTATGGAGG 59.895 60.000 0.00 0.00 0.00 4.30
1571 2106 1.432270 GGGAAGATGAAGAAGCCGCG 61.432 60.000 0.00 0.00 0.00 6.46
1616 2151 4.021925 GGAGCGGGAGTGGCTGTT 62.022 66.667 0.00 0.00 41.72 3.16
1659 2194 3.240134 GACAGTGGAGCCGAAGCCA 62.240 63.158 0.00 0.00 41.25 4.75
1964 2514 2.285220 CGGACAAGTGAAGTGTTGACAG 59.715 50.000 0.00 0.00 0.00 3.51
2090 2640 3.301274 CCTTGGTTTTGGTGGTAAAGGA 58.699 45.455 0.00 0.00 35.73 3.36
2261 2812 3.310303 GTGCTTCTTGTTATAGCGCTG 57.690 47.619 22.90 0.17 41.07 5.18
2272 2823 1.303309 ATAGCGCTGATGGTTTGAGC 58.697 50.000 22.90 0.00 0.00 4.26
2289 2840 3.149196 TGAGCCCAATCTCAAACTTCAC 58.851 45.455 0.00 0.00 39.89 3.18
2412 2966 3.999663 GCATTGAGATAGCATGTACTCCC 59.000 47.826 0.00 0.00 0.00 4.30
2437 3261 9.141400 CCTCCGTAAATAAATATAAGAGTGCTC 57.859 37.037 0.00 0.00 0.00 4.26
2438 3262 9.141400 CTCCGTAAATAAATATAAGAGTGCTCC 57.859 37.037 0.00 0.00 0.00 4.70
2447 3271 1.717032 AAGAGTGCTCCACAGTACCA 58.283 50.000 0.00 0.00 35.92 3.25
2450 3274 1.550524 GAGTGCTCCACAGTACCATGA 59.449 52.381 0.00 0.00 35.92 3.07
2455 3279 3.008923 TGCTCCACAGTACCATGAAATCA 59.991 43.478 0.00 0.00 0.00 2.57
2530 3368 5.505780 TCATCTGATTTTAACCGGGTCAAT 58.494 37.500 6.32 0.46 0.00 2.57
2543 3381 6.658188 ACCGGGTCAATAATTTCTCAAAAA 57.342 33.333 6.32 0.00 0.00 1.94
2593 3433 6.325028 ACACTGCATCCTCTATAACACTATGT 59.675 38.462 0.00 0.00 0.00 2.29
2595 3435 7.712639 CACTGCATCCTCTATAACACTATGTTT 59.287 37.037 0.00 0.00 41.45 2.83
2623 3464 9.342308 CTAGATTTAAAGAGCCCACATTCAATA 57.658 33.333 0.00 0.00 0.00 1.90
2647 3488 6.794534 AGAGGTCTTCAATTAGAATTGGGTT 58.205 36.000 13.60 0.00 44.51 4.11
2692 3533 8.676401 CAACAATTTCTCAAAGTTTTCCCATTT 58.324 29.630 0.00 0.00 0.00 2.32
2741 3588 4.398044 TGCTTCCTAATTTTTAAGGCCTCG 59.602 41.667 5.23 0.00 32.55 4.63
2814 3661 5.532779 GGGTCAACAATTTCTCAAACTCTCT 59.467 40.000 0.00 0.00 0.00 3.10
2859 3706 8.268850 TCACTATGTTCTCTAATTTTGAAGCC 57.731 34.615 0.00 0.00 0.00 4.35
2862 3709 7.890655 ACTATGTTCTCTAATTTTGAAGCCCTT 59.109 33.333 0.00 0.00 0.00 3.95
2863 3710 6.976934 TGTTCTCTAATTTTGAAGCCCTTT 57.023 33.333 0.00 0.00 0.00 3.11
2864 3711 6.981722 TGTTCTCTAATTTTGAAGCCCTTTC 58.018 36.000 0.00 0.00 36.29 2.62
2865 3712 6.549364 TGTTCTCTAATTTTGAAGCCCTTTCA 59.451 34.615 0.00 0.00 43.92 2.69
2866 3713 7.233348 TGTTCTCTAATTTTGAAGCCCTTTCAT 59.767 33.333 0.00 0.00 44.90 2.57
2867 3714 7.781324 TCTCTAATTTTGAAGCCCTTTCATT 57.219 32.000 0.00 0.00 44.90 2.57
2868 3715 7.830739 TCTCTAATTTTGAAGCCCTTTCATTC 58.169 34.615 0.00 0.00 44.90 2.67
2869 3716 7.451255 TCTCTAATTTTGAAGCCCTTTCATTCA 59.549 33.333 0.00 0.00 44.90 2.57
2870 3717 7.961351 TCTAATTTTGAAGCCCTTTCATTCAA 58.039 30.769 0.00 0.00 44.90 2.69
2875 3722 5.395682 TGAAGCCCTTTCATTCAATTGAG 57.604 39.130 8.41 0.00 40.82 3.02
2918 3773 1.347062 ACAATTTTGACCGGGCCAAT 58.653 45.000 3.83 0.00 0.00 3.16
2921 3776 1.864669 ATTTTGACCGGGCCAATGAT 58.135 45.000 3.83 3.86 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.134789 ACCCTACCATAAGTCGTCGT 57.865 50.000 0.00 0.00 0.00 4.34
129 132 3.058160 GCTGCTCACCGGTTGCAT 61.058 61.111 26.14 0.00 36.07 3.96
146 149 3.788766 GCTTGTAGCACGGTGGCG 61.789 66.667 10.60 0.00 41.89 5.69
201 204 3.743911 TCTCGCAACAATTGTCGTAATGT 59.256 39.130 12.39 0.00 33.85 2.71
204 207 3.991121 TCATCTCGCAACAATTGTCGTAA 59.009 39.130 12.39 5.55 33.85 3.18
213 216 0.321346 TGCCTCTCATCTCGCAACAA 59.679 50.000 0.00 0.00 0.00 2.83
216 219 1.442769 GTTTGCCTCTCATCTCGCAA 58.557 50.000 0.00 0.00 39.35 4.85
251 263 2.418669 TCCCCTTGTGTCTTTCCTCTT 58.581 47.619 0.00 0.00 0.00 2.85
287 307 4.554036 GCCGTCAGATGCCTCCCC 62.554 72.222 0.00 0.00 0.00 4.81
307 327 2.644676 CGTCACTGATCTGACTCCCTA 58.355 52.381 11.93 0.00 38.79 3.53
340 360 3.411446 TGTTAACCTGTGATGGCTTGAG 58.589 45.455 2.48 0.00 0.00 3.02
437 521 5.067283 GCAAAGTTTTAAACTCACCTCTCCA 59.933 40.000 10.98 0.00 41.91 3.86
496 582 5.804979 CGGACAAGACATCACTTTTTGTTTT 59.195 36.000 0.00 0.00 32.58 2.43
513 599 2.969443 AAACGAATGAAGCGGACAAG 57.031 45.000 0.00 0.00 0.00 3.16
590 1088 1.409661 GGCGGGAGTGGGTTTATGATT 60.410 52.381 0.00 0.00 0.00 2.57
591 1089 0.182775 GGCGGGAGTGGGTTTATGAT 59.817 55.000 0.00 0.00 0.00 2.45
592 1090 1.202099 TGGCGGGAGTGGGTTTATGA 61.202 55.000 0.00 0.00 0.00 2.15
593 1091 0.748005 CTGGCGGGAGTGGGTTTATG 60.748 60.000 0.00 0.00 0.00 1.90
595 1093 3.074281 CTGGCGGGAGTGGGTTTA 58.926 61.111 0.00 0.00 0.00 2.01
645 1143 0.106769 ACCCACACACAGCATTCACA 60.107 50.000 0.00 0.00 0.00 3.58
646 1144 0.593128 GACCCACACACAGCATTCAC 59.407 55.000 0.00 0.00 0.00 3.18
647 1145 0.884259 CGACCCACACACAGCATTCA 60.884 55.000 0.00 0.00 0.00 2.57
648 1146 1.868997 CGACCCACACACAGCATTC 59.131 57.895 0.00 0.00 0.00 2.67
649 1147 2.260869 GCGACCCACACACAGCATT 61.261 57.895 0.00 0.00 0.00 3.56
650 1148 2.669569 GCGACCCACACACAGCAT 60.670 61.111 0.00 0.00 0.00 3.79
651 1149 4.927782 GGCGACCCACACACAGCA 62.928 66.667 0.00 0.00 0.00 4.41
652 1150 4.626081 AGGCGACCCACACACAGC 62.626 66.667 0.00 0.00 0.00 4.40
653 1151 2.357517 GAGGCGACCCACACACAG 60.358 66.667 0.00 0.00 0.00 3.66
654 1152 3.157949 TGAGGCGACCCACACACA 61.158 61.111 0.00 0.00 0.00 3.72
659 1157 4.736896 GTCGGTGAGGCGACCCAC 62.737 72.222 0.00 0.00 31.57 4.61
660 1158 4.988716 AGTCGGTGAGGCGACCCA 62.989 66.667 0.00 0.00 35.93 4.51
661 1159 2.345760 TAAGTCGGTGAGGCGACCC 61.346 63.158 0.00 0.00 35.93 4.46
662 1160 1.153881 GTAAGTCGGTGAGGCGACC 60.154 63.158 0.00 0.00 35.93 4.79
663 1161 1.153881 GGTAAGTCGGTGAGGCGAC 60.154 63.158 0.00 0.00 35.58 5.19
664 1162 0.896940 AAGGTAAGTCGGTGAGGCGA 60.897 55.000 0.00 0.00 0.00 5.54
665 1163 0.458025 GAAGGTAAGTCGGTGAGGCG 60.458 60.000 0.00 0.00 0.00 5.52
666 1164 0.896226 AGAAGGTAAGTCGGTGAGGC 59.104 55.000 0.00 0.00 0.00 4.70
876 1405 3.039202 GCACCAACCTTCATCGCCG 62.039 63.158 0.00 0.00 0.00 6.46
990 1519 0.326048 CCAGGTCCATCTCCTCCACT 60.326 60.000 0.00 0.00 32.37 4.00
1120 1649 2.283529 GCACCACCTTCCTCCGAGA 61.284 63.158 0.00 0.00 0.00 4.04
1291 1820 2.323599 CTCCTGATGAGAGGGTGCATA 58.676 52.381 0.00 0.00 44.42 3.14
1303 1832 1.659098 GAAAACGCGTACCTCCTGATG 59.341 52.381 14.46 0.00 0.00 3.07
1328 1857 0.593128 CCTGACCAAAAGGAACAGCG 59.407 55.000 0.00 0.00 36.91 5.18
1353 1882 0.113580 TTCCCTTACCAAGCAACCCC 59.886 55.000 0.00 0.00 0.00 4.95
1367 1896 4.352893 CCAAACATTACCTCCATTTCCCT 58.647 43.478 0.00 0.00 0.00 4.20
1597 2132 4.463879 CAGCCACTCCCGCTCCTG 62.464 72.222 0.00 0.00 33.17 3.86
1645 2180 2.892425 CGATGGCTTCGGCTCCAC 60.892 66.667 14.35 0.00 44.28 4.02
1964 2514 0.310854 CTCCAAACGGCAGAAACCAC 59.689 55.000 0.00 0.00 0.00 4.16
2261 2812 2.726821 TGAGATTGGGCTCAAACCATC 58.273 47.619 1.42 0.00 41.65 3.51
2289 2840 6.317893 AGGCCACAAAGGTATTTATCTAAACG 59.682 38.462 5.01 0.00 40.61 3.60
2412 2966 9.141400 GGAGCACTCTTATATTTATTTACGGAG 57.859 37.037 0.00 0.00 0.00 4.63
2437 3261 8.993121 GTTATAGATGATTTCATGGTACTGTGG 58.007 37.037 0.00 0.00 36.57 4.17
2438 3262 9.546428 TGTTATAGATGATTTCATGGTACTGTG 57.454 33.333 0.00 0.00 36.57 3.66
2447 3271 8.944029 GCTGCATAGTGTTATAGATGATTTCAT 58.056 33.333 0.00 0.00 39.70 2.57
2450 3274 7.173907 GTGGCTGCATAGTGTTATAGATGATTT 59.826 37.037 0.50 0.00 0.00 2.17
2455 3279 5.551305 TGTGGCTGCATAGTGTTATAGAT 57.449 39.130 0.50 0.00 0.00 1.98
2512 3350 8.356000 AGAAATTATTGACCCGGTTAAAATCA 57.644 30.769 0.00 0.00 0.00 2.57
2519 3357 6.658188 TTTTGAGAAATTATTGACCCGGTT 57.342 33.333 0.00 0.00 0.00 4.44
2573 3413 7.445945 AGGAAACATAGTGTTATAGAGGATGC 58.554 38.462 0.00 0.00 40.14 3.91
2593 3433 6.134535 TGTGGGCTCTTTAAATCTAGGAAA 57.865 37.500 0.00 0.00 0.00 3.13
2595 3435 5.975988 ATGTGGGCTCTTTAAATCTAGGA 57.024 39.130 0.00 0.00 0.00 2.94
2601 3441 7.286316 CCTCTATTGAATGTGGGCTCTTTAAAT 59.714 37.037 0.00 0.00 0.00 1.40
2623 3464 6.394345 ACCCAATTCTAATTGAAGACCTCT 57.606 37.500 15.37 0.00 46.72 3.69
2658 3499 2.226330 TGAGAAATTGTTGACCCGGTG 58.774 47.619 0.00 0.00 0.00 4.94
2751 3598 8.749354 GTGACCCAATTCTAAATTGAATACCTT 58.251 33.333 12.73 0.00 35.82 3.50
2875 3722 9.050601 TGTAAACCAAATCCAAAATTGAATGTC 57.949 29.630 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.