Multiple sequence alignment - TraesCS1A01G143700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G143700 chr1A 100.000 3663 0 0 1 3663 248611115 248614777 0.000000e+00 6765.0
1 TraesCS1A01G143700 chr1A 85.714 168 24 0 1 168 478898810 478898977 1.050000e-40 178.0
2 TraesCS1A01G143700 chr1D 89.649 3246 165 78 304 3424 198018933 198022132 0.000000e+00 3975.0
3 TraesCS1A01G143700 chr1D 85.276 163 22 2 2 162 62221241 62221403 2.260000e-37 167.0
4 TraesCS1A01G143700 chr1B 89.953 2359 122 49 659 2945 277958362 277960677 0.000000e+00 2937.0
5 TraesCS1A01G143700 chr1B 95.294 425 19 1 3045 3468 277961880 277962304 0.000000e+00 673.0
6 TraesCS1A01G143700 chr1B 94.030 67 2 2 3598 3663 277962420 277962485 2.330000e-17 100.0
7 TraesCS1A01G143700 chr1B 80.952 84 3 4 2937 3019 277961759 277961830 2.000000e-03 54.7
8 TraesCS1A01G143700 chr7D 79.515 454 48 25 1047 1482 59672721 59672295 7.740000e-72 281.0
9 TraesCS1A01G143700 chr5D 78.855 454 48 24 1048 1482 220776649 220776225 2.810000e-66 263.0
10 TraesCS1A01G143700 chr3B 88.272 162 19 0 1 162 417487454 417487615 1.040000e-45 195.0
11 TraesCS1A01G143700 chr3B 86.420 162 21 1 2 162 138494655 138494816 3.760000e-40 176.0
12 TraesCS1A01G143700 chr3B 85.714 161 23 0 2 162 194564016 194564176 1.750000e-38 171.0
13 TraesCS1A01G143700 chr2A 86.391 169 19 4 2 168 502828391 502828225 8.080000e-42 182.0
14 TraesCS1A01G143700 chr6D 87.117 163 15 6 1 161 109212277 109212435 2.910000e-41 180.0
15 TraesCS1A01G143700 chr3D 86.420 162 21 1 2 162 89206017 89206178 3.760000e-40 176.0
16 TraesCS1A01G143700 chr3A 85.802 162 22 1 2 162 105901970 105902131 1.750000e-38 171.0
17 TraesCS1A01G143700 chr3A 85.897 78 11 0 434 511 554391393 554391470 2.340000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G143700 chr1A 248611115 248614777 3662 False 6765.000 6765 100.00000 1 3663 1 chr1A.!!$F1 3662
1 TraesCS1A01G143700 chr1D 198018933 198022132 3199 False 3975.000 3975 89.64900 304 3424 1 chr1D.!!$F2 3120
2 TraesCS1A01G143700 chr1B 277958362 277962485 4123 False 941.175 2937 90.05725 659 3663 4 chr1B.!!$F1 3004

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.031616 CAGGAGGAAGTAGAGGGGCT 60.032 60.0 0.0 0.0 0.00 5.19 F
846 866 0.036306 CCCTCATATACCCGTTGCCC 59.964 60.0 0.0 0.0 0.00 5.36 F
1149 1180 0.037326 GCGACATCACCAACCTGAGA 60.037 55.0 0.0 0.0 0.00 3.27 F
1412 1461 0.302890 GCCTGCATCGATTGTTCTCG 59.697 55.0 0.0 0.0 39.99 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1677 1.266718 CATGTTCAAGTCCACGGTTGG 59.733 52.381 0.0 0.0 45.56 3.77 R
2523 2595 0.961358 CTCCCACGACGTCTCCTTCT 60.961 60.000 14.7 0.0 0.00 2.85 R
2551 2623 2.047274 CGTGGGAACTGCACCGAT 60.047 61.111 0.0 0.0 0.00 4.18 R
3189 4446 1.532523 TCCATTGCTTTCACGCATCA 58.467 45.000 0.0 0.0 40.04 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.596310 TTGATTTACGATCCGGTCACA 57.404 42.857 0.00 0.00 0.00 3.58
22 23 3.596310 TGATTTACGATCCGGTCACAA 57.404 42.857 0.00 0.00 0.00 3.33
23 24 3.517602 TGATTTACGATCCGGTCACAAG 58.482 45.455 0.00 0.00 0.00 3.16
24 25 1.717194 TTTACGATCCGGTCACAAGC 58.283 50.000 0.00 0.00 0.00 4.01
25 26 0.892755 TTACGATCCGGTCACAAGCT 59.107 50.000 0.00 0.00 0.00 3.74
26 27 0.172578 TACGATCCGGTCACAAGCTG 59.827 55.000 0.00 0.00 0.00 4.24
27 28 1.811266 CGATCCGGTCACAAGCTGG 60.811 63.158 0.00 0.00 0.00 4.85
28 29 1.596934 GATCCGGTCACAAGCTGGA 59.403 57.895 0.00 0.00 32.77 3.86
29 30 0.036388 GATCCGGTCACAAGCTGGAA 60.036 55.000 0.00 0.00 32.26 3.53
30 31 0.620556 ATCCGGTCACAAGCTGGAAT 59.379 50.000 0.00 0.00 32.26 3.01
31 32 0.400213 TCCGGTCACAAGCTGGAATT 59.600 50.000 0.00 0.00 0.00 2.17
32 33 1.626321 TCCGGTCACAAGCTGGAATTA 59.374 47.619 0.00 0.00 0.00 1.40
33 34 2.039216 TCCGGTCACAAGCTGGAATTAA 59.961 45.455 0.00 0.00 0.00 1.40
34 35 3.016736 CCGGTCACAAGCTGGAATTAAT 58.983 45.455 0.00 0.00 0.00 1.40
35 36 3.443681 CCGGTCACAAGCTGGAATTAATT 59.556 43.478 0.00 0.00 0.00 1.40
36 37 4.638421 CCGGTCACAAGCTGGAATTAATTA 59.362 41.667 0.00 0.00 0.00 1.40
37 38 5.299279 CCGGTCACAAGCTGGAATTAATTAT 59.701 40.000 0.00 0.00 0.00 1.28
38 39 6.183360 CCGGTCACAAGCTGGAATTAATTATT 60.183 38.462 0.00 0.00 0.00 1.40
39 40 7.257722 CGGTCACAAGCTGGAATTAATTATTT 58.742 34.615 0.00 0.00 0.00 1.40
40 41 8.402472 CGGTCACAAGCTGGAATTAATTATTTA 58.598 33.333 0.00 0.00 0.00 1.40
61 62 3.801114 ACAAAAGCTTGTTTGAGACCC 57.199 42.857 16.01 0.00 43.45 4.46
62 63 3.365472 ACAAAAGCTTGTTTGAGACCCT 58.635 40.909 16.01 0.00 43.45 4.34
63 64 4.532834 ACAAAAGCTTGTTTGAGACCCTA 58.467 39.130 16.01 0.00 43.45 3.53
64 65 4.580580 ACAAAAGCTTGTTTGAGACCCTAG 59.419 41.667 16.01 0.00 43.45 3.02
65 66 2.481289 AGCTTGTTTGAGACCCTAGC 57.519 50.000 0.00 0.00 0.00 3.42
66 67 1.981495 AGCTTGTTTGAGACCCTAGCT 59.019 47.619 0.00 0.00 34.00 3.32
67 68 2.373502 AGCTTGTTTGAGACCCTAGCTT 59.626 45.455 0.00 0.00 34.72 3.74
68 69 3.583086 AGCTTGTTTGAGACCCTAGCTTA 59.417 43.478 0.00 0.00 34.72 3.09
69 70 4.041691 AGCTTGTTTGAGACCCTAGCTTAA 59.958 41.667 0.00 0.00 34.72 1.85
70 71 4.760204 GCTTGTTTGAGACCCTAGCTTAAA 59.240 41.667 0.00 0.00 0.00 1.52
71 72 5.106515 GCTTGTTTGAGACCCTAGCTTAAAG 60.107 44.000 0.00 0.00 0.00 1.85
72 73 4.906618 TGTTTGAGACCCTAGCTTAAAGG 58.093 43.478 0.00 0.00 0.00 3.11
91 92 4.082523 CACCATCCACCCGTCGCT 62.083 66.667 0.00 0.00 0.00 4.93
92 93 3.319198 ACCATCCACCCGTCGCTT 61.319 61.111 0.00 0.00 0.00 4.68
93 94 2.511600 CCATCCACCCGTCGCTTC 60.512 66.667 0.00 0.00 0.00 3.86
94 95 2.885644 CATCCACCCGTCGCTTCG 60.886 66.667 0.00 0.00 0.00 3.79
95 96 3.066190 ATCCACCCGTCGCTTCGA 61.066 61.111 0.00 0.00 0.00 3.71
96 97 2.423898 ATCCACCCGTCGCTTCGAT 61.424 57.895 0.00 0.00 38.42 3.59
97 98 1.105167 ATCCACCCGTCGCTTCGATA 61.105 55.000 0.00 0.00 38.42 2.92
98 99 1.140161 CCACCCGTCGCTTCGATAA 59.860 57.895 0.00 0.00 38.42 1.75
99 100 1.143969 CCACCCGTCGCTTCGATAAC 61.144 60.000 0.00 0.00 38.42 1.89
100 101 0.179145 CACCCGTCGCTTCGATAACT 60.179 55.000 0.00 0.00 38.42 2.24
101 102 0.100146 ACCCGTCGCTTCGATAACTC 59.900 55.000 0.00 0.00 38.42 3.01
102 103 0.099968 CCCGTCGCTTCGATAACTCA 59.900 55.000 0.00 0.00 38.42 3.41
103 104 1.467875 CCGTCGCTTCGATAACTCAG 58.532 55.000 0.00 0.00 38.42 3.35
104 105 1.467875 CGTCGCTTCGATAACTCAGG 58.532 55.000 0.00 0.00 38.42 3.86
105 106 1.841450 GTCGCTTCGATAACTCAGGG 58.159 55.000 0.00 0.00 38.42 4.45
106 107 1.134560 GTCGCTTCGATAACTCAGGGT 59.865 52.381 0.00 0.00 38.42 4.34
107 108 1.404391 TCGCTTCGATAACTCAGGGTC 59.596 52.381 0.00 0.00 0.00 4.46
108 109 1.134367 CGCTTCGATAACTCAGGGTCA 59.866 52.381 0.00 0.00 0.00 4.02
109 110 2.541556 GCTTCGATAACTCAGGGTCAC 58.458 52.381 0.00 0.00 0.00 3.67
110 111 2.738964 GCTTCGATAACTCAGGGTCACC 60.739 54.545 0.00 0.00 0.00 4.02
124 125 3.621558 GGGTCACCTATGAGGAAAAAGG 58.378 50.000 0.00 0.00 37.67 3.11
125 126 3.017442 GGTCACCTATGAGGAAAAAGGC 58.983 50.000 0.00 0.00 37.67 4.35
126 127 2.678336 GTCACCTATGAGGAAAAAGGCG 59.322 50.000 0.00 0.00 37.67 5.52
127 128 2.569853 TCACCTATGAGGAAAAAGGCGA 59.430 45.455 0.00 0.00 37.67 5.54
128 129 3.008594 TCACCTATGAGGAAAAAGGCGAA 59.991 43.478 0.00 0.00 37.67 4.70
129 130 3.756434 CACCTATGAGGAAAAAGGCGAAA 59.244 43.478 0.00 0.00 37.67 3.46
130 131 4.217550 CACCTATGAGGAAAAAGGCGAAAA 59.782 41.667 0.00 0.00 37.67 2.29
131 132 5.016831 ACCTATGAGGAAAAAGGCGAAAAT 58.983 37.500 0.00 0.00 37.67 1.82
132 133 5.125578 ACCTATGAGGAAAAAGGCGAAAATC 59.874 40.000 0.00 0.00 37.67 2.17
133 134 3.934457 TGAGGAAAAAGGCGAAAATCC 57.066 42.857 0.00 0.00 0.00 3.01
134 135 3.496331 TGAGGAAAAAGGCGAAAATCCT 58.504 40.909 0.00 0.00 39.91 3.24
135 136 3.895041 TGAGGAAAAAGGCGAAAATCCTT 59.105 39.130 0.00 0.00 45.31 3.36
157 158 5.385509 TTTTTCTCCATTTTCGGATCACC 57.614 39.130 0.00 0.00 33.56 4.02
158 159 3.712016 TTCTCCATTTTCGGATCACCA 57.288 42.857 0.00 0.00 33.56 4.17
159 160 3.712016 TCTCCATTTTCGGATCACCAA 57.288 42.857 0.00 0.00 33.56 3.67
160 161 4.027674 TCTCCATTTTCGGATCACCAAA 57.972 40.909 0.00 0.00 33.56 3.28
161 162 4.009675 TCTCCATTTTCGGATCACCAAAG 58.990 43.478 0.00 0.00 33.56 2.77
162 163 3.758554 CTCCATTTTCGGATCACCAAAGT 59.241 43.478 0.00 0.00 33.56 2.66
163 164 4.912586 TCCATTTTCGGATCACCAAAGTA 58.087 39.130 0.00 0.00 35.59 2.24
164 165 5.317808 TCCATTTTCGGATCACCAAAGTAA 58.682 37.500 0.00 0.00 35.59 2.24
165 166 5.949354 TCCATTTTCGGATCACCAAAGTAAT 59.051 36.000 0.00 0.00 35.59 1.89
166 167 6.435904 TCCATTTTCGGATCACCAAAGTAATT 59.564 34.615 0.00 0.00 35.59 1.40
167 168 7.612244 TCCATTTTCGGATCACCAAAGTAATTA 59.388 33.333 0.00 0.00 35.59 1.40
168 169 7.915397 CCATTTTCGGATCACCAAAGTAATTAG 59.085 37.037 0.00 0.00 35.59 1.73
169 170 6.431198 TTTCGGATCACCAAAGTAATTAGC 57.569 37.500 0.00 0.00 35.59 3.09
170 171 4.116961 TCGGATCACCAAAGTAATTAGCG 58.883 43.478 0.00 0.00 35.59 4.26
171 172 4.116961 CGGATCACCAAAGTAATTAGCGA 58.883 43.478 0.00 0.00 35.59 4.93
172 173 4.209288 CGGATCACCAAAGTAATTAGCGAG 59.791 45.833 0.00 0.00 35.59 5.03
173 174 5.357257 GGATCACCAAAGTAATTAGCGAGA 58.643 41.667 0.00 0.00 35.97 4.04
174 175 5.815740 GGATCACCAAAGTAATTAGCGAGAA 59.184 40.000 0.00 0.00 35.97 2.87
175 176 6.018669 GGATCACCAAAGTAATTAGCGAGAAG 60.019 42.308 0.00 0.00 35.97 2.85
176 177 5.790593 TCACCAAAGTAATTAGCGAGAAGT 58.209 37.500 0.00 0.00 0.00 3.01
177 178 5.637810 TCACCAAAGTAATTAGCGAGAAGTG 59.362 40.000 0.00 0.00 0.00 3.16
178 179 4.935808 ACCAAAGTAATTAGCGAGAAGTGG 59.064 41.667 0.00 0.00 0.00 4.00
179 180 4.935808 CCAAAGTAATTAGCGAGAAGTGGT 59.064 41.667 0.00 0.00 0.00 4.16
180 181 5.063564 CCAAAGTAATTAGCGAGAAGTGGTC 59.936 44.000 0.00 0.00 0.00 4.02
181 182 5.401531 AAGTAATTAGCGAGAAGTGGTCA 57.598 39.130 0.00 0.00 0.00 4.02
182 183 4.745649 AGTAATTAGCGAGAAGTGGTCAC 58.254 43.478 0.00 0.00 0.00 3.67
183 184 3.963428 AATTAGCGAGAAGTGGTCACT 57.037 42.857 0.00 0.00 44.94 3.41
184 185 3.512033 ATTAGCGAGAAGTGGTCACTC 57.488 47.619 3.93 0.00 41.58 3.51
185 186 1.905637 TAGCGAGAAGTGGTCACTCA 58.094 50.000 3.93 0.00 41.58 3.41
186 187 1.040646 AGCGAGAAGTGGTCACTCAA 58.959 50.000 3.93 0.00 41.58 3.02
187 188 1.140816 GCGAGAAGTGGTCACTCAAC 58.859 55.000 3.93 0.48 41.58 3.18
188 189 1.409412 CGAGAAGTGGTCACTCAACG 58.591 55.000 3.93 6.71 41.58 4.10
189 190 1.001706 CGAGAAGTGGTCACTCAACGA 60.002 52.381 3.93 0.00 41.58 3.85
190 191 2.395654 GAGAAGTGGTCACTCAACGAC 58.604 52.381 3.93 0.00 41.58 4.34
191 192 1.754803 AGAAGTGGTCACTCAACGACA 59.245 47.619 3.93 0.00 41.58 4.35
192 193 1.859080 GAAGTGGTCACTCAACGACAC 59.141 52.381 3.93 0.00 41.58 3.67
193 194 0.104304 AGTGGTCACTCAACGACACC 59.896 55.000 0.00 0.00 36.92 4.16
194 195 0.104304 GTGGTCACTCAACGACACCT 59.896 55.000 0.00 0.00 34.97 4.00
195 196 0.828022 TGGTCACTCAACGACACCTT 59.172 50.000 0.00 0.00 34.97 3.50
196 197 1.202486 TGGTCACTCAACGACACCTTC 60.202 52.381 0.00 0.00 34.97 3.46
204 205 2.505557 CGACACCTTCGGTACCGC 60.506 66.667 29.64 12.38 44.60 5.68
205 206 2.505557 GACACCTTCGGTACCGCG 60.506 66.667 29.64 20.94 39.59 6.46
206 207 2.981560 GACACCTTCGGTACCGCGA 61.982 63.158 29.64 18.44 39.59 5.87
207 208 2.275547 GACACCTTCGGTACCGCGAT 62.276 60.000 29.64 11.66 39.59 4.58
208 209 1.031571 ACACCTTCGGTACCGCGATA 61.032 55.000 29.64 9.61 39.59 2.92
209 210 0.317603 CACCTTCGGTACCGCGATAG 60.318 60.000 29.64 20.60 39.59 2.08
210 211 1.285023 CCTTCGGTACCGCGATAGG 59.715 63.158 29.64 24.78 39.59 2.57
242 243 4.131376 GGCACCTGATCATGGTCG 57.869 61.111 12.31 9.94 35.28 4.79
243 244 1.522092 GGCACCTGATCATGGTCGA 59.478 57.895 12.31 0.00 35.28 4.20
244 245 0.811616 GGCACCTGATCATGGTCGAC 60.812 60.000 7.13 7.13 35.28 4.20
245 246 0.108186 GCACCTGATCATGGTCGACA 60.108 55.000 18.91 3.91 35.28 4.35
246 247 1.473965 GCACCTGATCATGGTCGACAT 60.474 52.381 18.91 6.28 41.57 3.06
247 248 2.910199 CACCTGATCATGGTCGACATT 58.090 47.619 18.91 0.07 37.84 2.71
248 249 2.610833 CACCTGATCATGGTCGACATTG 59.389 50.000 18.91 13.79 37.84 2.82
249 250 2.216046 CCTGATCATGGTCGACATTGG 58.784 52.381 18.91 3.65 37.84 3.16
250 251 1.600957 CTGATCATGGTCGACATTGGC 59.399 52.381 18.91 10.02 37.84 4.52
251 252 1.210234 TGATCATGGTCGACATTGGCT 59.790 47.619 18.91 5.45 37.84 4.75
252 253 2.433970 TGATCATGGTCGACATTGGCTA 59.566 45.455 18.91 0.00 37.84 3.93
253 254 3.118445 TGATCATGGTCGACATTGGCTAA 60.118 43.478 18.91 0.00 37.84 3.09
254 255 2.905075 TCATGGTCGACATTGGCTAAG 58.095 47.619 18.91 0.00 37.84 2.18
255 256 2.236146 TCATGGTCGACATTGGCTAAGT 59.764 45.455 18.91 0.00 37.84 2.24
256 257 2.380084 TGGTCGACATTGGCTAAGTC 57.620 50.000 18.91 0.00 0.00 3.01
260 261 3.460648 GACATTGGCTAAGTCGGCT 57.539 52.632 0.00 0.00 0.00 5.52
261 262 1.291132 GACATTGGCTAAGTCGGCTC 58.709 55.000 0.00 0.00 0.00 4.70
262 263 0.905357 ACATTGGCTAAGTCGGCTCT 59.095 50.000 0.00 0.00 0.00 4.09
263 264 1.134670 ACATTGGCTAAGTCGGCTCTC 60.135 52.381 0.00 0.00 0.00 3.20
264 265 0.466124 ATTGGCTAAGTCGGCTCTCC 59.534 55.000 0.00 0.00 0.00 3.71
274 275 4.357947 GGCTCTCCGCACGACACA 62.358 66.667 0.00 0.00 41.67 3.72
275 276 2.807045 GCTCTCCGCACGACACAG 60.807 66.667 0.00 0.00 38.92 3.66
276 277 2.126307 CTCTCCGCACGACACAGG 60.126 66.667 0.00 0.00 0.00 4.00
277 278 2.596338 TCTCCGCACGACACAGGA 60.596 61.111 0.00 0.00 0.00 3.86
278 279 2.126307 CTCCGCACGACACAGGAG 60.126 66.667 0.00 0.00 43.43 3.69
279 280 3.633094 CTCCGCACGACACAGGAGG 62.633 68.421 2.61 0.00 44.78 4.30
280 281 3.680786 CCGCACGACACAGGAGGA 61.681 66.667 0.00 0.00 0.00 3.71
281 282 2.338620 CGCACGACACAGGAGGAA 59.661 61.111 0.00 0.00 0.00 3.36
282 283 1.734477 CGCACGACACAGGAGGAAG 60.734 63.158 0.00 0.00 0.00 3.46
283 284 1.367840 GCACGACACAGGAGGAAGT 59.632 57.895 0.00 0.00 0.00 3.01
284 285 0.601558 GCACGACACAGGAGGAAGTA 59.398 55.000 0.00 0.00 0.00 2.24
285 286 1.402984 GCACGACACAGGAGGAAGTAG 60.403 57.143 0.00 0.00 0.00 2.57
286 287 2.160205 CACGACACAGGAGGAAGTAGA 58.840 52.381 0.00 0.00 0.00 2.59
287 288 2.162608 CACGACACAGGAGGAAGTAGAG 59.837 54.545 0.00 0.00 0.00 2.43
288 289 1.746220 CGACACAGGAGGAAGTAGAGG 59.254 57.143 0.00 0.00 0.00 3.69
289 290 2.104170 GACACAGGAGGAAGTAGAGGG 58.896 57.143 0.00 0.00 0.00 4.30
290 291 1.273324 ACACAGGAGGAAGTAGAGGGG 60.273 57.143 0.00 0.00 0.00 4.79
291 292 0.325765 ACAGGAGGAAGTAGAGGGGC 60.326 60.000 0.00 0.00 0.00 5.80
292 293 0.031616 CAGGAGGAAGTAGAGGGGCT 60.032 60.000 0.00 0.00 0.00 5.19
293 294 0.263468 AGGAGGAAGTAGAGGGGCTC 59.737 60.000 0.00 0.00 0.00 4.70
294 295 0.761323 GGAGGAAGTAGAGGGGCTCC 60.761 65.000 0.00 0.00 0.00 4.70
305 306 2.267324 GGGCTCCTCTGTGAGTGC 59.733 66.667 0.00 0.00 34.74 4.40
308 309 0.459489 GGCTCCTCTGTGAGTGCTAG 59.541 60.000 0.00 0.00 34.74 3.42
338 339 2.574929 CGGCAGCACCCTTACGTA 59.425 61.111 0.00 0.00 33.26 3.57
339 340 1.518572 CGGCAGCACCCTTACGTAG 60.519 63.158 0.00 0.00 33.26 3.51
340 341 1.814169 GGCAGCACCCTTACGTAGC 60.814 63.158 0.00 0.00 0.00 3.58
355 356 1.331138 CGTAGCTGGAAGGACTACTCG 59.669 57.143 0.00 0.00 35.25 4.18
369 370 2.897969 ACTACTCGGACAACAACAGGAT 59.102 45.455 0.00 0.00 0.00 3.24
377 378 3.325870 GACAACAACAGGATGATGACGA 58.674 45.455 0.00 0.00 42.01 4.20
379 380 3.748048 ACAACAACAGGATGATGACGAAG 59.252 43.478 0.00 0.00 42.01 3.79
422 436 2.031437 CGACGTACCAGGTTAGCTAGTC 59.969 54.545 0.00 0.00 0.00 2.59
427 441 5.530543 ACGTACCAGGTTAGCTAGTCTAATC 59.469 44.000 0.00 8.70 39.29 1.75
430 444 7.255520 CGTACCAGGTTAGCTAGTCTAATCAAT 60.256 40.741 15.22 6.56 40.16 2.57
431 445 7.439108 ACCAGGTTAGCTAGTCTAATCAATT 57.561 36.000 15.22 1.82 40.16 2.32
432 446 7.862675 ACCAGGTTAGCTAGTCTAATCAATTT 58.137 34.615 15.22 0.00 40.16 1.82
433 447 8.329502 ACCAGGTTAGCTAGTCTAATCAATTTT 58.670 33.333 15.22 0.00 40.16 1.82
434 448 9.178758 CCAGGTTAGCTAGTCTAATCAATTTTT 57.821 33.333 15.22 0.00 40.16 1.94
469 483 6.370593 CGGATGAAATACCGTCCATTTTATG 58.629 40.000 0.00 0.00 41.27 1.90
470 484 6.149633 GGATGAAATACCGTCCATTTTATGC 58.850 40.000 0.00 0.00 40.96 3.14
471 485 6.238897 GGATGAAATACCGTCCATTTTATGCA 60.239 38.462 0.00 0.00 40.96 3.96
472 486 6.516739 TGAAATACCGTCCATTTTATGCAA 57.483 33.333 0.00 0.00 0.00 4.08
473 487 6.925211 TGAAATACCGTCCATTTTATGCAAA 58.075 32.000 0.00 0.00 0.00 3.68
474 488 7.551585 TGAAATACCGTCCATTTTATGCAAAT 58.448 30.769 0.00 0.00 35.24 2.32
475 489 7.704472 TGAAATACCGTCCATTTTATGCAAATC 59.296 33.333 0.00 0.00 32.24 2.17
499 513 7.796838 TCATGTCTGAACTTAAGTGAATTTCG 58.203 34.615 9.34 0.24 31.06 3.46
535 549 7.528996 TGAGAATCATCTGGTTTGTTCAAAT 57.471 32.000 1.33 0.00 42.56 2.32
539 553 3.057596 TCATCTGGTTTGTTCAAATCCGC 60.058 43.478 6.15 0.00 0.00 5.54
554 568 3.788434 ATCCGCTTTGAAATATACGCG 57.212 42.857 3.53 3.53 40.22 6.01
557 571 3.579147 CGCTTTGAAATATACGCGGAA 57.421 42.857 12.47 0.00 37.25 4.30
559 573 4.336101 CGCTTTGAAATATACGCGGAAAA 58.664 39.130 12.47 0.00 37.25 2.29
570 584 0.168128 CGCGGAAAAGGTTGGATGAC 59.832 55.000 0.00 0.00 0.00 3.06
588 605 0.765510 ACCAACTTCCACTGTCCCTC 59.234 55.000 0.00 0.00 0.00 4.30
630 648 0.611714 AATAAGTGTCCCGGAGCGTT 59.388 50.000 0.73 0.00 0.00 4.84
638 656 2.464459 CCCGGAGCGTTGAAGATGC 61.464 63.158 0.73 0.00 40.73 3.91
652 670 6.128849 CGTTGAAGATGCCCTAAACAAAATTG 60.129 38.462 0.00 0.00 0.00 2.32
706 724 2.093711 ACTGCCTTTGTGAAACCCAAAC 60.094 45.455 0.00 0.00 34.36 2.93
794 814 1.381872 CTCCGTCCACTCCCCTGAT 60.382 63.158 0.00 0.00 0.00 2.90
846 866 0.036306 CCCTCATATACCCGTTGCCC 59.964 60.000 0.00 0.00 0.00 5.36
914 936 1.196012 GACCGACCAAATCCCTCTCT 58.804 55.000 0.00 0.00 0.00 3.10
919 941 2.360801 CGACCAAATCCCTCTCTCTCTC 59.639 54.545 0.00 0.00 0.00 3.20
948 970 2.812619 CCGGCTCCCCAATCTCTCC 61.813 68.421 0.00 0.00 0.00 3.71
971 993 2.750350 CCTTCTTGGCGACCCACT 59.250 61.111 0.00 0.00 41.97 4.00
982 1004 1.671379 GACCCACTCTTTGGCCGTC 60.671 63.158 0.00 0.00 45.37 4.79
1017 1039 1.079127 CATGGAGACCGCCGTTCTT 60.079 57.895 0.00 0.00 0.00 2.52
1149 1180 0.037326 GCGACATCACCAACCTGAGA 60.037 55.000 0.00 0.00 0.00 3.27
1310 1358 2.027625 GTGGTCGCTAACGCTGCTT 61.028 57.895 0.00 0.00 39.84 3.91
1311 1359 1.736645 TGGTCGCTAACGCTGCTTC 60.737 57.895 0.00 0.00 39.84 3.86
1330 1379 2.968675 TCTTTTTCTCGAATCCCCGTC 58.031 47.619 0.00 0.00 0.00 4.79
1389 1438 3.053991 CCTGGAGGAGAGAGAGTGAGTAA 60.054 52.174 0.00 0.00 37.39 2.24
1412 1461 0.302890 GCCTGCATCGATTGTTCTCG 59.697 55.000 0.00 0.00 39.99 4.04
1421 1470 5.005779 GCATCGATTGTTCTCGTTTGTCTAT 59.994 40.000 0.00 0.00 39.62 1.98
1505 1554 1.061711 CGTGCAGCAAGTTCATAGAGC 59.938 52.381 0.00 0.00 0.00 4.09
1619 1677 4.948004 AGAAACTCCATTATCCCCGTTTTC 59.052 41.667 0.00 0.00 0.00 2.29
1853 1912 2.888594 TCGCTACAACATGAGCTTACC 58.111 47.619 0.00 0.00 36.50 2.85
2184 2256 3.489908 GCTGCTGAGATCTCGATGTAACA 60.490 47.826 17.76 6.99 0.00 2.41
2207 2279 8.275187 ACAATGATATCCCTACCAGTATTTGA 57.725 34.615 0.00 0.00 0.00 2.69
2278 2350 1.977854 TGTTCTTTGCTAGCTCTGGGA 59.022 47.619 17.23 4.49 0.00 4.37
2338 2410 3.073735 AGGGAGAGCGCACAGAGG 61.074 66.667 11.47 0.00 0.00 3.69
2364 2436 1.140252 AGTAACACCCACAAGCTCGTT 59.860 47.619 0.00 0.00 0.00 3.85
2418 2490 1.466167 CCGTTCAGCCACTGATTCTTG 59.534 52.381 0.00 0.00 40.39 3.02
2523 2595 2.264480 CGGCGGTGGAGATGACAA 59.736 61.111 0.00 0.00 0.00 3.18
2551 2623 1.596934 GTCGTGGGAGCTGGATTCA 59.403 57.895 0.00 0.00 0.00 2.57
2780 2862 1.372838 CCAGCGTGTGTTTGGTGTGA 61.373 55.000 0.00 0.00 31.88 3.58
2821 2934 2.908688 AAGAATGGTGTTGGCAAACC 57.091 45.000 18.66 18.66 35.25 3.27
2838 2951 6.183360 TGGCAAACCAGATTCACTAATTTGTT 60.183 34.615 0.00 0.00 42.67 2.83
2873 2986 6.259550 ACTTCATAATTGGCAAAGAGACAC 57.740 37.500 3.01 0.00 32.34 3.67
2921 3040 8.292448 ACATCATCTGACAAAAATTCAGTACAC 58.708 33.333 0.00 0.00 41.22 2.90
2932 3051 4.908601 ATTCAGTACACCCACAATCTGA 57.091 40.909 0.00 0.00 0.00 3.27
2972 4181 3.006967 AGTTGCAGGAGAAACGAGTACAT 59.993 43.478 0.00 0.00 38.40 2.29
2973 4182 4.219944 AGTTGCAGGAGAAACGAGTACATA 59.780 41.667 0.00 0.00 38.40 2.29
2974 4183 5.105310 AGTTGCAGGAGAAACGAGTACATAT 60.105 40.000 0.00 0.00 38.40 1.78
2975 4184 6.096423 AGTTGCAGGAGAAACGAGTACATATA 59.904 38.462 0.00 0.00 38.40 0.86
2976 4185 6.073327 TGCAGGAGAAACGAGTACATATAG 57.927 41.667 0.00 0.00 0.00 1.31
2977 4186 5.826208 TGCAGGAGAAACGAGTACATATAGA 59.174 40.000 0.00 0.00 0.00 1.98
2978 4187 6.017026 TGCAGGAGAAACGAGTACATATAGAG 60.017 42.308 0.00 0.00 0.00 2.43
2979 4188 6.205076 GCAGGAGAAACGAGTACATATAGAGA 59.795 42.308 0.00 0.00 0.00 3.10
2980 4189 7.572353 GCAGGAGAAACGAGTACATATAGAGAG 60.572 44.444 0.00 0.00 0.00 3.20
2981 4190 7.658167 CAGGAGAAACGAGTACATATAGAGAGA 59.342 40.741 0.00 0.00 0.00 3.10
2996 4205 6.655078 ATAGAGAGAGCTTGGAAGATTCTC 57.345 41.667 10.87 10.87 37.98 2.87
3002 4211 5.729510 AGAGCTTGGAAGATTCTCTAACAC 58.270 41.667 0.00 0.00 32.86 3.32
3007 4226 6.092807 GCTTGGAAGATTCTCTAACACGAAAT 59.907 38.462 0.00 0.00 0.00 2.17
3008 4227 7.596749 TTGGAAGATTCTCTAACACGAAATC 57.403 36.000 0.00 0.00 0.00 2.17
3014 4255 7.522374 AGATTCTCTAACACGAAATCTTTTGC 58.478 34.615 0.00 0.00 0.00 3.68
3039 4280 5.461737 TCATTTGGTGCTTGAAAACGAATTC 59.538 36.000 0.00 0.00 0.00 2.17
3040 4281 4.377839 TTGGTGCTTGAAAACGAATTCA 57.622 36.364 6.22 0.00 37.53 2.57
3072 4322 4.142622 TGAACTTCATAATTGGCAGAAGCG 60.143 41.667 11.93 0.00 43.41 4.68
3078 4328 2.000429 AATTGGCAGAAGCGAAATGC 58.000 45.000 0.00 0.00 41.84 3.56
3119 4369 4.159506 AGCTCTCGCCCTATGAGATATTTC 59.840 45.833 0.00 0.00 41.39 2.17
3162 4419 6.091849 GCATCTCAGCATACCTGTATTACATG 59.908 42.308 0.00 0.00 42.38 3.21
3183 4440 3.265737 TGCCCACCTGTCAGTACATAATT 59.734 43.478 0.00 0.00 34.37 1.40
3189 4446 5.412594 CACCTGTCAGTACATAATTGCAAGT 59.587 40.000 4.94 4.58 34.37 3.16
3334 4591 3.120165 GGAGAAGGAAATCTCAAACACGC 60.120 47.826 6.64 0.00 46.24 5.34
3340 4610 1.512926 AATCTCAAACACGCTCGCTT 58.487 45.000 0.00 0.00 0.00 4.68
3341 4611 0.792640 ATCTCAAACACGCTCGCTTG 59.207 50.000 0.00 0.00 0.00 4.01
3359 4629 7.062255 GCTCGCTTGCATTTTTCTTACTAAAAT 59.938 33.333 0.00 0.00 36.03 1.82
3372 4643 8.589335 TTCTTACTAAAATATGGCGTCAGATC 57.411 34.615 0.00 0.00 0.00 2.75
3424 4696 6.315642 CAGAACAGATCAAAGTGCTATGATGT 59.684 38.462 0.00 0.00 36.45 3.06
3442 4714 6.142818 TGATGTGTTTCTTTAACCAAGGTG 57.857 37.500 0.00 0.00 35.81 4.00
3455 4727 2.624838 ACCAAGGTGCACATGAAGAAAG 59.375 45.455 20.43 5.72 0.00 2.62
3467 4739 9.230122 TGCACATGAAGAAAGATAATCTAACAA 57.770 29.630 0.00 0.00 0.00 2.83
3468 4740 9.713740 GCACATGAAGAAAGATAATCTAACAAG 57.286 33.333 0.00 0.00 0.00 3.16
3479 4751 9.628500 AAGATAATCTAACAAGATAACAACCCC 57.372 33.333 0.00 0.00 0.00 4.95
3480 4752 9.004231 AGATAATCTAACAAGATAACAACCCCT 57.996 33.333 0.00 0.00 0.00 4.79
3481 4753 9.274206 GATAATCTAACAAGATAACAACCCCTC 57.726 37.037 0.00 0.00 0.00 4.30
3482 4754 6.636454 ATCTAACAAGATAACAACCCCTCA 57.364 37.500 0.00 0.00 0.00 3.86
3483 4755 6.442541 TCTAACAAGATAACAACCCCTCAA 57.557 37.500 0.00 0.00 0.00 3.02
3484 4756 6.843752 TCTAACAAGATAACAACCCCTCAAA 58.156 36.000 0.00 0.00 0.00 2.69
3485 4757 7.291566 TCTAACAAGATAACAACCCCTCAAAA 58.708 34.615 0.00 0.00 0.00 2.44
3486 4758 6.800072 AACAAGATAACAACCCCTCAAAAA 57.200 33.333 0.00 0.00 0.00 1.94
3515 4787 8.818141 TCTAACAAGATAACAGTGTTTCTCTG 57.182 34.615 14.90 16.28 36.83 3.35
3516 4788 8.421784 TCTAACAAGATAACAGTGTTTCTCTGT 58.578 33.333 14.90 16.75 46.30 3.41
3517 4789 6.851222 ACAAGATAACAGTGTTTCTCTGTG 57.149 37.500 14.90 16.54 44.03 3.66
3518 4790 6.349300 ACAAGATAACAGTGTTTCTCTGTGT 58.651 36.000 14.90 17.03 44.03 3.72
3519 4791 6.823689 ACAAGATAACAGTGTTTCTCTGTGTT 59.176 34.615 14.90 0.00 44.03 3.32
3520 4792 6.851222 AGATAACAGTGTTTCTCTGTGTTG 57.149 37.500 14.90 0.00 44.03 3.33
3521 4793 6.582636 AGATAACAGTGTTTCTCTGTGTTGA 58.417 36.000 14.90 0.00 44.03 3.18
3522 4794 7.047891 AGATAACAGTGTTTCTCTGTGTTGAA 58.952 34.615 14.90 0.00 44.03 2.69
3523 4795 7.716998 AGATAACAGTGTTTCTCTGTGTTGAAT 59.283 33.333 14.90 0.00 44.03 2.57
3524 4796 5.490139 ACAGTGTTTCTCTGTGTTGAATG 57.510 39.130 0.00 0.00 43.32 2.67
3525 4797 4.943705 ACAGTGTTTCTCTGTGTTGAATGT 59.056 37.500 0.00 0.00 43.32 2.71
3526 4798 6.112734 ACAGTGTTTCTCTGTGTTGAATGTA 58.887 36.000 0.00 0.00 43.32 2.29
3527 4799 6.597672 ACAGTGTTTCTCTGTGTTGAATGTAA 59.402 34.615 0.00 0.00 43.32 2.41
3528 4800 7.120579 ACAGTGTTTCTCTGTGTTGAATGTAAA 59.879 33.333 0.00 0.00 43.32 2.01
3529 4801 7.967854 CAGTGTTTCTCTGTGTTGAATGTAAAA 59.032 33.333 0.00 0.00 0.00 1.52
3530 4802 8.519526 AGTGTTTCTCTGTGTTGAATGTAAAAA 58.480 29.630 0.00 0.00 0.00 1.94
3531 4803 8.583765 GTGTTTCTCTGTGTTGAATGTAAAAAC 58.416 33.333 0.00 0.00 0.00 2.43
3532 4804 8.519526 TGTTTCTCTGTGTTGAATGTAAAAACT 58.480 29.630 0.00 0.00 0.00 2.66
3533 4805 9.997482 GTTTCTCTGTGTTGAATGTAAAAACTA 57.003 29.630 0.00 0.00 0.00 2.24
3534 4806 9.997482 TTTCTCTGTGTTGAATGTAAAAACTAC 57.003 29.630 0.00 0.00 0.00 2.73
3535 4807 8.958119 TCTCTGTGTTGAATGTAAAAACTACT 57.042 30.769 0.00 0.00 0.00 2.57
3536 4808 9.391006 TCTCTGTGTTGAATGTAAAAACTACTT 57.609 29.630 0.00 0.00 0.00 2.24
3582 4854 5.705609 TCAGAAAATACAAGTTCCAAGGC 57.294 39.130 0.00 0.00 0.00 4.35
3589 4861 2.795329 ACAAGTTCCAAGGCATACAGG 58.205 47.619 0.00 0.00 0.00 4.00
3590 4862 2.108250 ACAAGTTCCAAGGCATACAGGT 59.892 45.455 0.00 0.00 0.00 4.00
3591 4863 3.157087 CAAGTTCCAAGGCATACAGGTT 58.843 45.455 0.00 0.00 0.00 3.50
3592 4864 4.202524 ACAAGTTCCAAGGCATACAGGTTA 60.203 41.667 0.00 0.00 0.00 2.85
3594 4866 5.968676 AGTTCCAAGGCATACAGGTTATA 57.031 39.130 0.00 0.00 0.00 0.98
3595 4867 5.930135 AGTTCCAAGGCATACAGGTTATAG 58.070 41.667 0.00 0.00 0.00 1.31
3596 4868 5.665812 AGTTCCAAGGCATACAGGTTATAGA 59.334 40.000 0.00 0.00 0.00 1.98
3600 4928 4.487282 AGGCATACAGGTTATAGAGGGA 57.513 45.455 0.00 0.00 0.00 4.20
3610 4938 6.384305 ACAGGTTATAGAGGGATATGGCATAC 59.616 42.308 9.83 4.10 0.00 2.39
3626 4955 4.099419 TGGCATACACGTCATACTTCAGAT 59.901 41.667 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.927854 TGTGACCGGATCGTAAATCAAA 58.072 40.909 9.46 0.00 0.00 2.69
1 2 3.596310 TGTGACCGGATCGTAAATCAA 57.404 42.857 9.46 0.00 0.00 2.57
2 3 3.517602 CTTGTGACCGGATCGTAAATCA 58.482 45.455 9.46 0.00 0.00 2.57
3 4 2.284417 GCTTGTGACCGGATCGTAAATC 59.716 50.000 9.46 0.00 0.00 2.17
4 5 2.093658 AGCTTGTGACCGGATCGTAAAT 60.094 45.455 9.46 0.00 0.00 1.40
5 6 1.274167 AGCTTGTGACCGGATCGTAAA 59.726 47.619 9.46 0.00 0.00 2.01
6 7 0.892755 AGCTTGTGACCGGATCGTAA 59.107 50.000 9.46 0.90 0.00 3.18
7 8 0.172578 CAGCTTGTGACCGGATCGTA 59.827 55.000 9.46 0.00 0.00 3.43
8 9 1.079819 CAGCTTGTGACCGGATCGT 60.080 57.895 9.46 0.00 0.00 3.73
9 10 1.811266 CCAGCTTGTGACCGGATCG 60.811 63.158 9.46 0.00 0.00 3.69
10 11 0.036388 TTCCAGCTTGTGACCGGATC 60.036 55.000 9.46 2.18 0.00 3.36
11 12 0.620556 ATTCCAGCTTGTGACCGGAT 59.379 50.000 9.46 0.00 0.00 4.18
12 13 0.400213 AATTCCAGCTTGTGACCGGA 59.600 50.000 9.46 0.00 0.00 5.14
13 14 2.107950 TAATTCCAGCTTGTGACCGG 57.892 50.000 0.00 0.00 0.00 5.28
14 15 4.701956 AATTAATTCCAGCTTGTGACCG 57.298 40.909 0.00 0.00 0.00 4.79
34 35 9.308318 GGTCTCAAACAAGCTTTTGTTAAATAA 57.692 29.630 10.01 0.00 43.66 1.40
35 36 7.923878 GGGTCTCAAACAAGCTTTTGTTAAATA 59.076 33.333 10.01 0.00 43.66 1.40
36 37 6.761242 GGGTCTCAAACAAGCTTTTGTTAAAT 59.239 34.615 10.01 0.00 43.66 1.40
37 38 6.071051 AGGGTCTCAAACAAGCTTTTGTTAAA 60.071 34.615 10.01 0.00 43.66 1.52
38 39 5.420739 AGGGTCTCAAACAAGCTTTTGTTAA 59.579 36.000 10.01 0.10 43.66 2.01
39 40 4.953579 AGGGTCTCAAACAAGCTTTTGTTA 59.046 37.500 10.01 0.00 43.66 2.41
40 41 3.769300 AGGGTCTCAAACAAGCTTTTGTT 59.231 39.130 10.01 4.56 46.12 2.83
41 42 3.365472 AGGGTCTCAAACAAGCTTTTGT 58.635 40.909 10.01 0.00 37.66 2.83
42 43 4.557496 GCTAGGGTCTCAAACAAGCTTTTG 60.557 45.833 0.00 0.00 37.75 2.44
43 44 3.570125 GCTAGGGTCTCAAACAAGCTTTT 59.430 43.478 0.00 0.00 30.92 2.27
44 45 3.149981 GCTAGGGTCTCAAACAAGCTTT 58.850 45.455 0.00 0.00 30.92 3.51
45 46 2.373502 AGCTAGGGTCTCAAACAAGCTT 59.626 45.455 0.00 0.00 36.93 3.74
46 47 1.981495 AGCTAGGGTCTCAAACAAGCT 59.019 47.619 0.00 0.00 36.03 3.74
47 48 2.481289 AGCTAGGGTCTCAAACAAGC 57.519 50.000 0.00 0.00 32.67 4.01
48 49 5.412904 CCTTTAAGCTAGGGTCTCAAACAAG 59.587 44.000 0.00 0.00 0.00 3.16
49 50 5.313712 CCTTTAAGCTAGGGTCTCAAACAA 58.686 41.667 0.00 0.00 0.00 2.83
50 51 4.263331 CCCTTTAAGCTAGGGTCTCAAACA 60.263 45.833 11.49 0.00 46.16 2.83
51 52 4.262617 CCCTTTAAGCTAGGGTCTCAAAC 58.737 47.826 11.49 0.00 46.16 2.93
52 53 4.569719 CCCTTTAAGCTAGGGTCTCAAA 57.430 45.455 11.49 0.00 46.16 2.69
60 61 2.576615 GATGGTGCCCTTTAAGCTAGG 58.423 52.381 0.00 0.00 0.00 3.02
61 62 2.092429 TGGATGGTGCCCTTTAAGCTAG 60.092 50.000 0.00 0.00 0.00 3.42
62 63 1.919654 TGGATGGTGCCCTTTAAGCTA 59.080 47.619 0.00 0.00 0.00 3.32
63 64 0.704076 TGGATGGTGCCCTTTAAGCT 59.296 50.000 0.00 0.00 0.00 3.74
64 65 0.817654 GTGGATGGTGCCCTTTAAGC 59.182 55.000 0.00 0.00 0.00 3.09
65 66 1.474330 GGTGGATGGTGCCCTTTAAG 58.526 55.000 0.00 0.00 0.00 1.85
66 67 0.040499 GGGTGGATGGTGCCCTTTAA 59.960 55.000 0.00 0.00 39.31 1.52
67 68 1.694856 GGGTGGATGGTGCCCTTTA 59.305 57.895 0.00 0.00 39.31 1.85
68 69 2.445155 GGGTGGATGGTGCCCTTT 59.555 61.111 0.00 0.00 39.31 3.11
69 70 4.047125 CGGGTGGATGGTGCCCTT 62.047 66.667 0.00 0.00 40.22 3.95
71 72 4.796495 GACGGGTGGATGGTGCCC 62.796 72.222 0.00 0.00 39.03 5.36
74 75 3.605749 AAGCGACGGGTGGATGGTG 62.606 63.158 0.00 0.00 0.00 4.17
75 76 3.310860 GAAGCGACGGGTGGATGGT 62.311 63.158 0.00 0.00 0.00 3.55
76 77 2.511600 GAAGCGACGGGTGGATGG 60.512 66.667 0.00 0.00 0.00 3.51
77 78 2.629050 ATCGAAGCGACGGGTGGATG 62.629 60.000 0.00 0.00 39.18 3.51
78 79 1.105167 TATCGAAGCGACGGGTGGAT 61.105 55.000 0.00 0.00 39.18 3.41
79 80 1.314534 TTATCGAAGCGACGGGTGGA 61.315 55.000 0.00 0.00 39.18 4.02
80 81 1.140161 TTATCGAAGCGACGGGTGG 59.860 57.895 0.00 0.00 39.18 4.61
81 82 0.179145 AGTTATCGAAGCGACGGGTG 60.179 55.000 0.00 0.00 39.18 4.61
82 83 0.100146 GAGTTATCGAAGCGACGGGT 59.900 55.000 0.00 0.00 39.18 5.28
83 84 0.099968 TGAGTTATCGAAGCGACGGG 59.900 55.000 0.00 0.00 39.18 5.28
84 85 1.467875 CTGAGTTATCGAAGCGACGG 58.532 55.000 0.00 0.00 39.18 4.79
85 86 1.467875 CCTGAGTTATCGAAGCGACG 58.532 55.000 0.00 0.00 39.18 5.12
86 87 1.134560 ACCCTGAGTTATCGAAGCGAC 59.865 52.381 0.00 0.00 39.18 5.19
87 88 1.404391 GACCCTGAGTTATCGAAGCGA 59.596 52.381 0.00 0.00 41.13 4.93
88 89 1.134367 TGACCCTGAGTTATCGAAGCG 59.866 52.381 0.00 0.00 0.00 4.68
89 90 2.541556 GTGACCCTGAGTTATCGAAGC 58.458 52.381 0.00 0.00 0.00 3.86
90 91 2.761208 AGGTGACCCTGAGTTATCGAAG 59.239 50.000 0.00 0.00 40.58 3.79
91 92 2.816411 AGGTGACCCTGAGTTATCGAA 58.184 47.619 0.00 0.00 40.58 3.71
92 93 2.526888 AGGTGACCCTGAGTTATCGA 57.473 50.000 0.00 0.00 40.58 3.59
93 94 3.889538 TCATAGGTGACCCTGAGTTATCG 59.110 47.826 0.00 0.00 42.67 2.92
94 95 4.282195 CCTCATAGGTGACCCTGAGTTATC 59.718 50.000 22.72 0.00 42.67 1.75
95 96 4.078571 TCCTCATAGGTGACCCTGAGTTAT 60.079 45.833 22.72 2.77 42.67 1.89
96 97 3.271225 TCCTCATAGGTGACCCTGAGTTA 59.729 47.826 22.72 12.59 42.67 2.24
97 98 2.044492 TCCTCATAGGTGACCCTGAGTT 59.956 50.000 22.72 0.00 42.67 3.01
98 99 1.646447 TCCTCATAGGTGACCCTGAGT 59.354 52.381 22.72 0.00 42.67 3.41
99 100 2.461300 TCCTCATAGGTGACCCTGAG 57.539 55.000 19.56 19.56 42.67 3.35
100 101 2.940514 TTCCTCATAGGTGACCCTGA 57.059 50.000 0.00 0.67 42.67 3.86
101 102 4.265073 CTTTTTCCTCATAGGTGACCCTG 58.735 47.826 0.00 0.00 42.67 4.45
102 103 3.267031 CCTTTTTCCTCATAGGTGACCCT 59.733 47.826 0.00 0.00 45.51 4.34
103 104 3.621558 CCTTTTTCCTCATAGGTGACCC 58.378 50.000 0.00 0.00 36.53 4.46
104 105 3.017442 GCCTTTTTCCTCATAGGTGACC 58.983 50.000 0.00 0.00 36.53 4.02
105 106 2.678336 CGCCTTTTTCCTCATAGGTGAC 59.322 50.000 0.00 0.00 39.99 3.67
106 107 2.569853 TCGCCTTTTTCCTCATAGGTGA 59.430 45.455 0.00 0.00 43.11 4.02
107 108 2.985896 TCGCCTTTTTCCTCATAGGTG 58.014 47.619 0.00 0.00 39.16 4.00
108 109 3.713826 TTCGCCTTTTTCCTCATAGGT 57.286 42.857 0.00 0.00 36.53 3.08
109 110 5.450550 GGATTTTCGCCTTTTTCCTCATAGG 60.451 44.000 0.00 0.00 36.46 2.57
110 111 5.358160 AGGATTTTCGCCTTTTTCCTCATAG 59.642 40.000 0.00 0.00 29.44 2.23
111 112 5.261216 AGGATTTTCGCCTTTTTCCTCATA 58.739 37.500 0.00 0.00 29.44 2.15
112 113 4.089361 AGGATTTTCGCCTTTTTCCTCAT 58.911 39.130 0.00 0.00 29.44 2.90
113 114 3.496331 AGGATTTTCGCCTTTTTCCTCA 58.504 40.909 0.00 0.00 29.44 3.86
114 115 4.521130 AAGGATTTTCGCCTTTTTCCTC 57.479 40.909 0.00 0.00 42.99 3.71
135 136 4.830046 TGGTGATCCGAAAATGGAGAAAAA 59.170 37.500 0.00 0.00 42.45 1.94
136 137 4.402829 TGGTGATCCGAAAATGGAGAAAA 58.597 39.130 0.00 0.00 42.45 2.29
137 138 4.027674 TGGTGATCCGAAAATGGAGAAA 57.972 40.909 0.00 0.00 42.45 2.52
138 139 3.712016 TGGTGATCCGAAAATGGAGAA 57.288 42.857 0.00 0.00 42.45 2.87
139 140 3.712016 TTGGTGATCCGAAAATGGAGA 57.288 42.857 0.00 0.00 42.45 3.71
140 141 3.758554 ACTTTGGTGATCCGAAAATGGAG 59.241 43.478 0.00 0.00 42.45 3.86
141 142 3.761897 ACTTTGGTGATCCGAAAATGGA 58.238 40.909 0.00 0.00 43.58 3.41
142 143 5.637006 TTACTTTGGTGATCCGAAAATGG 57.363 39.130 0.00 0.00 36.74 3.16
143 144 7.432252 GCTAATTACTTTGGTGATCCGAAAATG 59.568 37.037 0.00 0.00 36.74 2.32
144 145 7.480810 GCTAATTACTTTGGTGATCCGAAAAT 58.519 34.615 0.00 0.00 36.74 1.82
145 146 6.402766 CGCTAATTACTTTGGTGATCCGAAAA 60.403 38.462 0.00 0.00 36.74 2.29
146 147 5.064198 CGCTAATTACTTTGGTGATCCGAAA 59.936 40.000 0.00 0.00 36.74 3.46
147 148 4.569162 CGCTAATTACTTTGGTGATCCGAA 59.431 41.667 0.00 0.00 35.91 4.30
148 149 4.116961 CGCTAATTACTTTGGTGATCCGA 58.883 43.478 0.00 0.00 36.30 4.55
149 150 4.116961 TCGCTAATTACTTTGGTGATCCG 58.883 43.478 0.00 0.00 31.24 4.18
150 151 5.357257 TCTCGCTAATTACTTTGGTGATCC 58.643 41.667 0.00 0.00 35.17 3.36
151 152 6.535508 ACTTCTCGCTAATTACTTTGGTGATC 59.464 38.462 0.00 0.00 35.17 2.92
152 153 6.313905 CACTTCTCGCTAATTACTTTGGTGAT 59.686 38.462 0.00 0.00 35.17 3.06
153 154 5.637810 CACTTCTCGCTAATTACTTTGGTGA 59.362 40.000 0.00 0.00 34.58 4.02
154 155 5.163854 CCACTTCTCGCTAATTACTTTGGTG 60.164 44.000 0.00 0.00 0.00 4.17
155 156 4.935808 CCACTTCTCGCTAATTACTTTGGT 59.064 41.667 0.00 0.00 0.00 3.67
156 157 4.935808 ACCACTTCTCGCTAATTACTTTGG 59.064 41.667 0.00 0.00 0.00 3.28
157 158 5.637810 TGACCACTTCTCGCTAATTACTTTG 59.362 40.000 0.00 0.00 0.00 2.77
158 159 5.638234 GTGACCACTTCTCGCTAATTACTTT 59.362 40.000 0.00 0.00 0.00 2.66
159 160 5.047235 AGTGACCACTTCTCGCTAATTACTT 60.047 40.000 0.00 0.00 38.83 2.24
160 161 4.463186 AGTGACCACTTCTCGCTAATTACT 59.537 41.667 0.00 0.00 38.83 2.24
161 162 4.745649 AGTGACCACTTCTCGCTAATTAC 58.254 43.478 0.00 0.00 38.83 1.89
162 163 4.461431 TGAGTGACCACTTCTCGCTAATTA 59.539 41.667 3.98 0.00 42.66 1.40
163 164 3.258372 TGAGTGACCACTTCTCGCTAATT 59.742 43.478 3.98 0.00 42.66 1.40
164 165 2.826128 TGAGTGACCACTTCTCGCTAAT 59.174 45.455 3.98 0.00 42.66 1.73
165 166 2.235891 TGAGTGACCACTTCTCGCTAA 58.764 47.619 3.98 0.00 42.66 3.09
166 167 1.905637 TGAGTGACCACTTCTCGCTA 58.094 50.000 3.98 0.00 42.66 4.26
167 168 1.040646 TTGAGTGACCACTTCTCGCT 58.959 50.000 3.98 0.00 42.66 4.93
168 169 1.140816 GTTGAGTGACCACTTCTCGC 58.859 55.000 3.98 0.00 42.66 5.03
169 170 1.001706 TCGTTGAGTGACCACTTCTCG 60.002 52.381 3.98 9.07 42.66 4.04
170 171 2.223735 TGTCGTTGAGTGACCACTTCTC 60.224 50.000 3.98 0.00 42.66 2.87
171 172 1.754803 TGTCGTTGAGTGACCACTTCT 59.245 47.619 3.98 0.00 42.66 2.85
172 173 1.859080 GTGTCGTTGAGTGACCACTTC 59.141 52.381 3.98 0.00 42.66 3.01
173 174 1.472728 GGTGTCGTTGAGTGACCACTT 60.473 52.381 3.98 0.00 42.66 3.16
174 175 0.104304 GGTGTCGTTGAGTGACCACT 59.896 55.000 1.78 1.78 45.84 4.00
175 176 0.104304 AGGTGTCGTTGAGTGACCAC 59.896 55.000 0.00 0.00 35.46 4.16
176 177 0.828022 AAGGTGTCGTTGAGTGACCA 59.172 50.000 0.00 0.00 35.46 4.02
177 178 1.499049 GAAGGTGTCGTTGAGTGACC 58.501 55.000 0.00 0.00 35.46 4.02
178 179 1.129326 CGAAGGTGTCGTTGAGTGAC 58.871 55.000 0.00 0.00 45.09 3.67
179 180 3.562639 CGAAGGTGTCGTTGAGTGA 57.437 52.632 0.00 0.00 45.09 3.41
193 194 1.285023 CCCTATCGCGGTACCGAAG 59.715 63.158 37.62 27.76 41.01 3.79
194 195 2.195567 CCCCTATCGCGGTACCGAA 61.196 63.158 37.62 23.96 41.01 4.30
195 196 2.595463 CCCCTATCGCGGTACCGA 60.595 66.667 37.62 18.71 42.83 4.69
196 197 4.353437 GCCCCTATCGCGGTACCG 62.353 72.222 30.06 30.06 43.09 4.02
197 198 2.710724 CTTGCCCCTATCGCGGTACC 62.711 65.000 6.13 0.16 0.00 3.34
198 199 1.300697 CTTGCCCCTATCGCGGTAC 60.301 63.158 6.13 0.00 0.00 3.34
199 200 2.504274 CCTTGCCCCTATCGCGGTA 61.504 63.158 6.13 1.08 0.00 4.02
200 201 3.861797 CCTTGCCCCTATCGCGGT 61.862 66.667 6.13 0.00 0.00 5.68
223 224 1.918253 GACCATGATCAGGTGCCCT 59.082 57.895 18.06 0.00 40.09 5.19
224 225 1.524621 CGACCATGATCAGGTGCCC 60.525 63.158 18.06 6.54 40.09 5.36
225 226 0.811616 GTCGACCATGATCAGGTGCC 60.812 60.000 18.06 7.09 40.09 5.01
226 227 0.108186 TGTCGACCATGATCAGGTGC 60.108 55.000 18.06 10.59 40.09 5.01
227 228 2.609427 ATGTCGACCATGATCAGGTG 57.391 50.000 18.06 5.58 40.09 4.00
228 229 2.420547 CCAATGTCGACCATGATCAGGT 60.421 50.000 14.12 14.40 43.46 4.00
229 230 2.216046 CCAATGTCGACCATGATCAGG 58.784 52.381 14.12 0.00 32.82 3.86
230 231 1.600957 GCCAATGTCGACCATGATCAG 59.399 52.381 14.12 0.77 32.82 2.90
231 232 1.210234 AGCCAATGTCGACCATGATCA 59.790 47.619 14.12 0.00 32.82 2.92
232 233 1.959042 AGCCAATGTCGACCATGATC 58.041 50.000 14.12 7.31 32.82 2.92
233 234 3.118261 ACTTAGCCAATGTCGACCATGAT 60.118 43.478 14.12 6.81 32.82 2.45
234 235 2.236146 ACTTAGCCAATGTCGACCATGA 59.764 45.455 14.12 0.00 32.82 3.07
235 236 2.609459 GACTTAGCCAATGTCGACCATG 59.391 50.000 14.12 11.67 32.82 3.66
236 237 2.906354 GACTTAGCCAATGTCGACCAT 58.094 47.619 14.12 3.85 34.36 3.55
237 238 2.380084 GACTTAGCCAATGTCGACCA 57.620 50.000 14.12 1.26 0.00 4.02
242 243 1.134670 AGAGCCGACTTAGCCAATGTC 60.135 52.381 0.00 0.00 0.00 3.06
243 244 0.905357 AGAGCCGACTTAGCCAATGT 59.095 50.000 0.00 0.00 0.00 2.71
244 245 1.576356 GAGAGCCGACTTAGCCAATG 58.424 55.000 0.00 0.00 0.00 2.82
245 246 0.466124 GGAGAGCCGACTTAGCCAAT 59.534 55.000 0.00 0.00 0.00 3.16
246 247 1.898154 GGAGAGCCGACTTAGCCAA 59.102 57.895 0.00 0.00 0.00 4.52
247 248 3.617368 GGAGAGCCGACTTAGCCA 58.383 61.111 0.00 0.00 0.00 4.75
259 260 2.126307 CCTGTGTCGTGCGGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
260 261 2.596338 TCCTGTGTCGTGCGGAGA 60.596 61.111 0.00 0.00 0.00 3.71
261 262 2.126307 CTCCTGTGTCGTGCGGAG 60.126 66.667 0.00 0.00 37.33 4.63
262 263 3.680786 CCTCCTGTGTCGTGCGGA 61.681 66.667 0.00 0.00 0.00 5.54
263 264 3.220999 TTCCTCCTGTGTCGTGCGG 62.221 63.158 0.00 0.00 0.00 5.69
264 265 1.734477 CTTCCTCCTGTGTCGTGCG 60.734 63.158 0.00 0.00 0.00 5.34
265 266 0.601558 TACTTCCTCCTGTGTCGTGC 59.398 55.000 0.00 0.00 0.00 5.34
266 267 2.160205 TCTACTTCCTCCTGTGTCGTG 58.840 52.381 0.00 0.00 0.00 4.35
267 268 2.438411 CTCTACTTCCTCCTGTGTCGT 58.562 52.381 0.00 0.00 0.00 4.34
268 269 1.746220 CCTCTACTTCCTCCTGTGTCG 59.254 57.143 0.00 0.00 0.00 4.35
269 270 2.104170 CCCTCTACTTCCTCCTGTGTC 58.896 57.143 0.00 0.00 0.00 3.67
270 271 1.273324 CCCCTCTACTTCCTCCTGTGT 60.273 57.143 0.00 0.00 0.00 3.72
271 272 1.490574 CCCCTCTACTTCCTCCTGTG 58.509 60.000 0.00 0.00 0.00 3.66
272 273 0.325765 GCCCCTCTACTTCCTCCTGT 60.326 60.000 0.00 0.00 0.00 4.00
273 274 0.031616 AGCCCCTCTACTTCCTCCTG 60.032 60.000 0.00 0.00 0.00 3.86
274 275 0.263468 GAGCCCCTCTACTTCCTCCT 59.737 60.000 0.00 0.00 0.00 3.69
275 276 0.761323 GGAGCCCCTCTACTTCCTCC 60.761 65.000 0.00 0.00 32.93 4.30
276 277 0.263468 AGGAGCCCCTCTACTTCCTC 59.737 60.000 0.00 0.00 38.86 3.71
277 278 2.427016 AGGAGCCCCTCTACTTCCT 58.573 57.895 0.00 0.00 38.86 3.36
287 288 2.985456 CACTCACAGAGGAGCCCC 59.015 66.667 0.00 0.00 38.50 5.80
288 289 0.972983 TAGCACTCACAGAGGAGCCC 60.973 60.000 9.18 0.00 38.50 5.19
289 290 0.459489 CTAGCACTCACAGAGGAGCC 59.541 60.000 9.18 0.00 38.50 4.70
290 291 0.459489 CCTAGCACTCACAGAGGAGC 59.541 60.000 0.00 2.76 38.50 4.70
291 292 0.459489 GCCTAGCACTCACAGAGGAG 59.541 60.000 0.00 0.00 40.79 3.69
292 293 0.251787 TGCCTAGCACTCACAGAGGA 60.252 55.000 0.00 0.00 31.71 3.71
293 294 0.175302 CTGCCTAGCACTCACAGAGG 59.825 60.000 0.00 0.00 33.79 3.69
294 295 0.175302 CCTGCCTAGCACTCACAGAG 59.825 60.000 0.00 0.00 33.79 3.35
295 296 1.260538 CCCTGCCTAGCACTCACAGA 61.261 60.000 0.00 0.00 33.79 3.41
296 297 1.220206 CCCTGCCTAGCACTCACAG 59.780 63.158 0.00 0.00 33.79 3.66
297 298 0.618680 ATCCCTGCCTAGCACTCACA 60.619 55.000 0.00 0.00 33.79 3.58
298 299 0.179062 CATCCCTGCCTAGCACTCAC 60.179 60.000 0.00 0.00 33.79 3.51
299 300 1.976132 GCATCCCTGCCTAGCACTCA 61.976 60.000 0.00 0.00 42.88 3.41
300 301 1.227793 GCATCCCTGCCTAGCACTC 60.228 63.158 0.00 0.00 42.88 3.51
301 302 2.914289 GCATCCCTGCCTAGCACT 59.086 61.111 0.00 0.00 42.88 4.40
329 330 1.136500 GTCCTTCCAGCTACGTAAGGG 59.864 57.143 11.62 6.60 46.39 3.95
337 338 1.562942 TCCGAGTAGTCCTTCCAGCTA 59.437 52.381 0.00 0.00 0.00 3.32
338 339 0.331954 TCCGAGTAGTCCTTCCAGCT 59.668 55.000 0.00 0.00 0.00 4.24
339 340 0.456628 GTCCGAGTAGTCCTTCCAGC 59.543 60.000 0.00 0.00 0.00 4.85
340 341 1.835494 TGTCCGAGTAGTCCTTCCAG 58.165 55.000 0.00 0.00 0.00 3.86
355 356 2.416547 CGTCATCATCCTGTTGTTGTCC 59.583 50.000 0.00 0.00 0.00 4.02
396 397 1.305219 TAACCTGGTACGTCGTCCCG 61.305 60.000 0.00 0.00 0.00 5.14
399 400 0.807496 AGCTAACCTGGTACGTCGTC 59.193 55.000 0.00 0.00 0.00 4.20
401 402 2.012673 ACTAGCTAACCTGGTACGTCG 58.987 52.381 0.00 0.00 32.96 5.12
433 447 7.299586 CGGTATTTCATCCGTTCAAGTAAAAA 58.700 34.615 0.00 0.00 41.58 1.94
434 448 6.833839 CGGTATTTCATCCGTTCAAGTAAAA 58.166 36.000 0.00 0.00 41.58 1.52
435 449 6.411630 CGGTATTTCATCCGTTCAAGTAAA 57.588 37.500 0.00 0.00 41.58 2.01
469 483 6.902341 TCACTTAAGTTCAGACATGATTTGC 58.098 36.000 5.07 0.00 34.73 3.68
470 484 9.903682 AATTCACTTAAGTTCAGACATGATTTG 57.096 29.630 5.07 0.00 34.73 2.32
473 487 8.446273 CGAAATTCACTTAAGTTCAGACATGAT 58.554 33.333 5.07 0.00 41.22 2.45
474 488 7.441157 ACGAAATTCACTTAAGTTCAGACATGA 59.559 33.333 5.07 0.00 41.22 3.07
475 489 7.576236 ACGAAATTCACTTAAGTTCAGACATG 58.424 34.615 5.07 0.00 41.22 3.21
539 553 5.875930 ACCTTTTCCGCGTATATTTCAAAG 58.124 37.500 4.92 0.00 0.00 2.77
550 564 0.250553 TCATCCAACCTTTTCCGCGT 60.251 50.000 4.92 0.00 0.00 6.01
551 565 0.168128 GTCATCCAACCTTTTCCGCG 59.832 55.000 0.00 0.00 0.00 6.46
570 584 1.002544 GAGAGGGACAGTGGAAGTTGG 59.997 57.143 0.00 0.00 0.00 3.77
573 587 0.191064 TGGAGAGGGACAGTGGAAGT 59.809 55.000 0.00 0.00 0.00 3.01
574 588 1.209019 CATGGAGAGGGACAGTGGAAG 59.791 57.143 0.00 0.00 0.00 3.46
575 589 1.203300 TCATGGAGAGGGACAGTGGAA 60.203 52.381 0.00 0.00 0.00 3.53
577 591 0.829333 CTCATGGAGAGGGACAGTGG 59.171 60.000 0.00 0.00 40.84 4.00
588 605 0.656259 CTGCGAACATGCTCATGGAG 59.344 55.000 13.69 6.10 42.91 3.86
630 648 5.221601 TGCAATTTTGTTTAGGGCATCTTCA 60.222 36.000 0.00 0.00 0.00 3.02
638 656 4.111916 CGGCTATGCAATTTTGTTTAGGG 58.888 43.478 0.00 0.00 0.00 3.53
706 724 0.974383 ACTTGGGTAGAGACAACGGG 59.026 55.000 0.00 0.00 0.00 5.28
794 814 0.978151 TTCGAATCGGAGGGTTTGGA 59.022 50.000 1.76 0.00 0.00 3.53
846 866 2.504519 GGCAACGGCTAGTAGGGG 59.495 66.667 0.00 0.00 40.87 4.79
914 936 1.990060 CGGAAGCTTGGGGGAGAGA 60.990 63.158 2.10 0.00 0.00 3.10
948 970 1.377333 GTCGCCAAGAAGGGAAGGG 60.377 63.158 0.00 0.00 38.09 3.95
982 1004 2.124860 GGGATTTCGGTCACGGGG 60.125 66.667 0.00 0.00 41.39 5.73
1017 1039 4.560743 TTGACCTGCTGTGGCGCA 62.561 61.111 10.83 0.00 42.25 6.09
1178 1215 3.432051 CTCGACCCGTCCTGATGCC 62.432 68.421 0.00 0.00 0.00 4.40
1182 1219 2.675423 CACCTCGACCCGTCCTGA 60.675 66.667 0.00 0.00 0.00 3.86
1219 1256 4.072088 CTTGACCAACCGCGCGAC 62.072 66.667 34.63 14.83 0.00 5.19
1310 1358 2.565834 AGACGGGGATTCGAGAAAAAGA 59.434 45.455 0.00 0.00 0.00 2.52
1311 1359 2.930682 GAGACGGGGATTCGAGAAAAAG 59.069 50.000 0.00 0.00 0.00 2.27
1330 1379 5.105716 TCCGAGTTCTCCTGAAATTACAGAG 60.106 44.000 0.00 0.00 39.94 3.35
1389 1438 2.756760 AGAACAATCGATGCAGGCAAAT 59.243 40.909 0.00 0.00 0.00 2.32
1412 1461 5.234466 AGCCCTATCCATCATAGACAAAC 57.766 43.478 0.00 0.00 37.27 2.93
1421 1470 3.718434 ACATCAAGAAGCCCTATCCATCA 59.282 43.478 0.00 0.00 0.00 3.07
1522 1571 3.982316 TGCCAGCCGCAGATTCTGG 62.982 63.158 15.28 5.63 44.64 3.86
1619 1677 1.266718 CATGTTCAAGTCCACGGTTGG 59.733 52.381 0.00 0.00 45.56 3.77
1635 1693 3.610040 TTAGCCTCGTGATGAACATGT 57.390 42.857 0.00 0.00 36.90 3.21
1767 1826 8.044908 TCAGATCTGAGAATGTCATGATCAAAA 58.955 33.333 21.67 0.00 39.67 2.44
2039 2108 3.052082 CTGTCGGCAGCCAAGTGG 61.052 66.667 13.30 0.00 35.77 4.00
2117 2189 4.577677 TTCTTGGCACTGGCGGCA 62.578 61.111 12.58 12.58 42.47 5.69
2184 2256 8.157476 GTGTCAAATACTGGTAGGGATATCATT 58.843 37.037 4.83 0.00 0.00 2.57
2338 2410 1.802365 CTTGTGGGTGTTACTTACCGC 59.198 52.381 0.00 0.00 39.14 5.68
2364 2436 7.555914 TCCCAGATCGAACATTTGATGATTTTA 59.444 33.333 0.00 0.00 31.50 1.52
2523 2595 0.961358 CTCCCACGACGTCTCCTTCT 60.961 60.000 14.70 0.00 0.00 2.85
2551 2623 2.047274 CGTGGGAACTGCACCGAT 60.047 61.111 0.00 0.00 0.00 4.18
2713 2785 7.177392 AGGCAGCAAAGAATAAGTTAACTCATT 59.823 33.333 8.95 6.08 0.00 2.57
2721 2793 4.321527 GCAGAAGGCAGCAAAGAATAAGTT 60.322 41.667 0.00 0.00 43.97 2.66
2722 2794 3.192212 GCAGAAGGCAGCAAAGAATAAGT 59.808 43.478 0.00 0.00 43.97 2.24
2723 2795 3.767278 GCAGAAGGCAGCAAAGAATAAG 58.233 45.455 0.00 0.00 43.97 1.73
2780 2862 8.463930 TCTTTCACACTACAATCCAGATTTTT 57.536 30.769 0.00 0.00 0.00 1.94
2821 2934 8.944029 AGAGTGATGAACAAATTAGTGAATCTG 58.056 33.333 0.00 0.00 0.00 2.90
2822 2935 8.944029 CAGAGTGATGAACAAATTAGTGAATCT 58.056 33.333 0.00 0.00 0.00 2.40
2823 2936 8.939929 TCAGAGTGATGAACAAATTAGTGAATC 58.060 33.333 0.00 0.00 0.00 2.52
2824 2937 8.853077 TCAGAGTGATGAACAAATTAGTGAAT 57.147 30.769 0.00 0.00 0.00 2.57
2838 2951 6.317140 GCCAATTATGAAGTTCAGAGTGATGA 59.683 38.462 11.91 0.00 0.00 2.92
2896 3015 7.752239 GGTGTACTGAATTTTTGTCAGATGATG 59.248 37.037 8.36 0.00 44.44 3.07
2897 3016 7.094205 GGGTGTACTGAATTTTTGTCAGATGAT 60.094 37.037 8.36 0.00 44.44 2.45
2898 3017 6.206634 GGGTGTACTGAATTTTTGTCAGATGA 59.793 38.462 8.36 0.00 44.44 2.92
2899 3018 6.016360 TGGGTGTACTGAATTTTTGTCAGATG 60.016 38.462 8.36 0.00 44.44 2.90
2921 3040 5.295292 GTGACTGTTATGATCAGATTGTGGG 59.705 44.000 0.09 0.00 36.81 4.61
2932 3051 5.301551 TGCAACTTTTGGTGACTGTTATGAT 59.698 36.000 0.00 0.00 40.19 2.45
2972 4181 7.759489 GAGAATCTTCCAAGCTCTCTCTATA 57.241 40.000 0.00 0.00 34.52 1.31
2973 4182 6.655078 GAGAATCTTCCAAGCTCTCTCTAT 57.345 41.667 0.00 0.00 34.52 1.98
2996 4205 7.148918 CCAAATGAGCAAAAGATTTCGTGTTAG 60.149 37.037 0.00 0.00 0.00 2.34
3002 4211 4.143263 GCACCAAATGAGCAAAAGATTTCG 60.143 41.667 0.00 0.00 0.00 3.46
3007 4226 3.384146 TCAAGCACCAAATGAGCAAAAGA 59.616 39.130 0.00 0.00 0.00 2.52
3008 4227 3.719924 TCAAGCACCAAATGAGCAAAAG 58.280 40.909 0.00 0.00 0.00 2.27
3014 4255 3.963665 TCGTTTTCAAGCACCAAATGAG 58.036 40.909 0.00 0.00 0.00 2.90
3039 4280 6.320171 CAATTATGAAGTTCAGAGTGGCTTG 58.680 40.000 11.91 4.67 0.00 4.01
3040 4281 5.416952 CCAATTATGAAGTTCAGAGTGGCTT 59.583 40.000 19.27 2.09 29.47 4.35
3042 4283 4.439289 GCCAATTATGAAGTTCAGAGTGGC 60.439 45.833 30.67 30.67 44.27 5.01
3043 4284 4.701651 TGCCAATTATGAAGTTCAGAGTGG 59.298 41.667 23.65 23.65 35.83 4.00
3072 4322 2.294233 TGCACTGGTGAAAGAGCATTTC 59.706 45.455 4.79 7.31 38.60 2.17
3119 4369 4.461781 AGATGCCCAAGTCAGAAAAGAATG 59.538 41.667 0.00 0.00 0.00 2.67
3162 4419 3.560636 ATTATGTACTGACAGGTGGGC 57.439 47.619 7.51 0.00 39.50 5.36
3189 4446 1.532523 TCCATTGCTTTCACGCATCA 58.467 45.000 0.00 0.00 40.04 3.07
3334 4591 7.851822 TTTTAGTAAGAAAAATGCAAGCGAG 57.148 32.000 0.00 0.00 0.00 5.03
3340 4610 8.247562 ACGCCATATTTTAGTAAGAAAAATGCA 58.752 29.630 0.00 0.00 37.19 3.96
3341 4611 8.628882 ACGCCATATTTTAGTAAGAAAAATGC 57.371 30.769 4.49 0.06 37.19 3.56
3359 4629 3.318275 GGACAGTAAGATCTGACGCCATA 59.682 47.826 4.46 0.00 38.63 2.74
3372 4643 5.671329 GCGTTATTTCAGCAAGGACAGTAAG 60.671 44.000 0.00 0.00 0.00 2.34
3424 4696 3.764434 TGTGCACCTTGGTTAAAGAAACA 59.236 39.130 15.69 0.00 40.08 2.83
3426 4698 4.646945 TCATGTGCACCTTGGTTAAAGAAA 59.353 37.500 15.69 0.00 38.24 2.52
3442 4714 9.713740 CTTGTTAGATTATCTTTCTTCATGTGC 57.286 33.333 0.00 0.00 0.00 4.57
3455 4727 9.274206 GAGGGGTTGTTATCTTGTTAGATTATC 57.726 37.037 0.00 0.00 41.38 1.75
3489 4761 9.429359 CAGAGAAACACTGTTATCTTGTTAGAT 57.571 33.333 6.78 0.00 43.51 1.98
3490 4762 8.421784 ACAGAGAAACACTGTTATCTTGTTAGA 58.578 33.333 6.78 0.00 44.69 2.10
3491 4763 8.491152 CACAGAGAAACACTGTTATCTTGTTAG 58.509 37.037 0.00 0.90 44.69 2.34
3492 4764 7.985184 ACACAGAGAAACACTGTTATCTTGTTA 59.015 33.333 0.00 0.00 44.69 2.41
3493 4765 6.823689 ACACAGAGAAACACTGTTATCTTGTT 59.176 34.615 0.00 0.00 44.69 2.83
3494 4766 6.349300 ACACAGAGAAACACTGTTATCTTGT 58.651 36.000 0.00 10.38 44.69 3.16
3495 4767 6.851222 ACACAGAGAAACACTGTTATCTTG 57.149 37.500 0.00 9.96 44.69 3.02
3496 4768 7.047891 TCAACACAGAGAAACACTGTTATCTT 58.952 34.615 0.00 0.00 44.69 2.40
3497 4769 6.582636 TCAACACAGAGAAACACTGTTATCT 58.417 36.000 0.00 0.00 44.69 1.98
3498 4770 6.844696 TCAACACAGAGAAACACTGTTATC 57.155 37.500 0.00 0.00 44.69 1.75
3499 4771 7.283127 ACATTCAACACAGAGAAACACTGTTAT 59.717 33.333 0.00 0.00 44.69 1.89
3500 4772 6.597672 ACATTCAACACAGAGAAACACTGTTA 59.402 34.615 0.00 0.00 44.69 2.41
3501 4773 5.415701 ACATTCAACACAGAGAAACACTGTT 59.584 36.000 0.00 0.00 44.69 3.16
3503 4775 5.490139 ACATTCAACACAGAGAAACACTG 57.510 39.130 0.00 0.00 40.68 3.66
3504 4776 7.624360 TTTACATTCAACACAGAGAAACACT 57.376 32.000 0.00 0.00 0.00 3.55
3505 4777 8.583765 GTTTTTACATTCAACACAGAGAAACAC 58.416 33.333 0.00 0.00 0.00 3.32
3506 4778 8.519526 AGTTTTTACATTCAACACAGAGAAACA 58.480 29.630 0.00 0.00 0.00 2.83
3507 4779 8.911247 AGTTTTTACATTCAACACAGAGAAAC 57.089 30.769 0.00 0.00 0.00 2.78
3508 4780 9.997482 GTAGTTTTTACATTCAACACAGAGAAA 57.003 29.630 0.00 0.00 0.00 2.52
3509 4781 9.391006 AGTAGTTTTTACATTCAACACAGAGAA 57.609 29.630 0.00 0.00 0.00 2.87
3510 4782 8.958119 AGTAGTTTTTACATTCAACACAGAGA 57.042 30.769 0.00 0.00 0.00 3.10
3570 4842 2.795329 ACCTGTATGCCTTGGAACTTG 58.205 47.619 0.00 0.00 0.00 3.16
3582 4854 6.384015 TGCCATATCCCTCTATAACCTGTATG 59.616 42.308 0.00 0.00 0.00 2.39
3589 4861 6.127423 ACGTGTATGCCATATCCCTCTATAAC 60.127 42.308 0.00 0.00 0.00 1.89
3590 4862 5.955959 ACGTGTATGCCATATCCCTCTATAA 59.044 40.000 0.00 0.00 0.00 0.98
3591 4863 5.516044 ACGTGTATGCCATATCCCTCTATA 58.484 41.667 0.00 0.00 0.00 1.31
3592 4864 4.353777 ACGTGTATGCCATATCCCTCTAT 58.646 43.478 0.00 0.00 0.00 1.98
3594 4866 2.563179 GACGTGTATGCCATATCCCTCT 59.437 50.000 0.00 0.00 0.00 3.69
3595 4867 2.299013 TGACGTGTATGCCATATCCCTC 59.701 50.000 0.00 0.00 0.00 4.30
3596 4868 2.325484 TGACGTGTATGCCATATCCCT 58.675 47.619 0.00 0.00 0.00 4.20
3600 4928 6.015434 TCTGAAGTATGACGTGTATGCCATAT 60.015 38.462 0.00 0.00 0.00 1.78
3610 4938 7.148423 TGGAATTTTCATCTGAAGTATGACGTG 60.148 37.037 0.00 0.00 33.18 4.49
3626 4955 7.587037 AAGATGTCACTTCTTGGAATTTTCA 57.413 32.000 5.16 0.00 32.30 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.