Multiple sequence alignment - TraesCS1A01G143600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G143600 chr1A 100.000 7178 0 0 948 8125 248435410 248428233 0.000000e+00 13256.0
1 TraesCS1A01G143600 chr1A 92.325 1329 48 20 4841 6146 493433922 493435219 0.000000e+00 1840.0
2 TraesCS1A01G143600 chr1A 100.000 710 0 0 1 710 248436357 248435648 0.000000e+00 1312.0
3 TraesCS1A01G143600 chr1A 90.204 786 53 7 7349 8112 125152862 125153645 0.000000e+00 1003.0
4 TraesCS1A01G143600 chr1A 96.452 451 14 2 6147 6596 589990202 589990651 0.000000e+00 743.0
5 TraesCS1A01G143600 chr1A 92.692 260 16 3 3794 4051 506278285 506278027 9.960000e-99 372.0
6 TraesCS1A01G143600 chr1A 93.878 245 15 0 3807 4051 516764366 516764610 3.580000e-98 370.0
7 TraesCS1A01G143600 chr1A 93.802 242 14 1 3810 4051 58490374 58490134 5.990000e-96 363.0
8 TraesCS1A01G143600 chr1A 93.776 241 15 0 3810 4050 65260462 65260222 5.990000e-96 363.0
9 TraesCS1A01G143600 chr1A 93.089 246 16 1 3810 4055 459271103 459271347 7.750000e-95 359.0
10 TraesCS1A01G143600 chr1A 93.089 246 16 1 3807 4051 562726964 562726719 7.750000e-95 359.0
11 TraesCS1A01G143600 chr1A 91.829 257 17 4 3808 4062 51702624 51702878 1.000000e-93 355.0
12 TraesCS1A01G143600 chr1A 97.987 149 3 0 4675 4823 589990056 589990204 8.090000e-65 259.0
13 TraesCS1A01G143600 chr1A 75.814 215 41 5 203 417 486749707 486749504 1.870000e-16 99.0
14 TraesCS1A01G143600 chr1D 91.836 2462 83 41 948 3329 197741387 197738964 0.000000e+00 3325.0
15 TraesCS1A01G143600 chr1D 90.581 775 38 15 6596 7349 197737289 197736529 0.000000e+00 994.0
16 TraesCS1A01G143600 chr1D 87.413 715 45 27 1 710 197742147 197741473 0.000000e+00 780.0
17 TraesCS1A01G143600 chr1D 81.235 810 125 20 5025 5827 450146352 450147141 5.350000e-176 628.0
18 TraesCS1A01G143600 chr1D 94.444 126 5 1 3686 3811 197738153 197738030 8.320000e-45 193.0
19 TraesCS1A01G143600 chr1D 85.311 177 24 1 202 376 430064996 430064820 1.800000e-41 182.0
20 TraesCS1A01G143600 chr1B 90.587 2369 83 49 948 3233 277770234 277767923 0.000000e+00 3011.0
21 TraesCS1A01G143600 chr1B 90.032 632 40 14 4910 5520 677376873 677377502 0.000000e+00 797.0
22 TraesCS1A01G143600 chr1B 86.345 476 38 11 6899 7349 277766486 277766013 2.040000e-135 494.0
23 TraesCS1A01G143600 chr1B 93.802 242 15 0 3810 4051 152079625 152079866 1.670000e-96 364.0
24 TraesCS1A01G143600 chr1B 87.640 267 7 4 444 710 277770551 277770311 3.710000e-73 287.0
25 TraesCS1A01G143600 chr1B 88.601 193 15 4 3 192 277770792 277770604 2.280000e-55 228.0
26 TraesCS1A01G143600 chr1B 92.373 118 6 2 3616 3733 277767590 277767476 1.810000e-36 165.0
27 TraesCS1A01G143600 chr1B 97.059 34 1 0 4141 4174 165762381 165762348 3.170000e-04 58.4
28 TraesCS1A01G143600 chr6A 92.992 1327 40 24 4841 6146 584127579 584126285 0.000000e+00 1886.0
29 TraesCS1A01G143600 chr6A 90.529 1341 73 15 4841 6146 607591016 607592337 0.000000e+00 1724.0
30 TraesCS1A01G143600 chr6A 94.483 870 27 7 5292 6146 940411 941274 0.000000e+00 1321.0
31 TraesCS1A01G143600 chr6A 81.308 963 139 27 5025 5969 132418735 132419674 0.000000e+00 743.0
32 TraesCS1A01G143600 chr6A 94.672 244 12 1 3808 4050 428075474 428075717 2.140000e-100 377.0
33 TraesCS1A01G143600 chr6A 92.400 250 19 0 3810 4059 5356258 5356009 2.790000e-94 357.0
34 TraesCS1A01G143600 chr6A 78.652 178 30 8 202 376 38725842 38725670 2.400000e-20 111.0
35 TraesCS1A01G143600 chr6A 76.098 205 44 4 6385 6588 615440559 615440759 1.440000e-17 102.0
36 TraesCS1A01G143600 chr3A 92.744 1323 51 13 4841 6147 15883347 15882054 0.000000e+00 1869.0
37 TraesCS1A01G143600 chr3A 91.754 1334 50 29 4841 6150 143391572 143390275 0.000000e+00 1799.0
38 TraesCS1A01G143600 chr3A 90.385 780 62 7 7349 8117 582441833 582442610 0.000000e+00 1013.0
39 TraesCS1A01G143600 chr3A 95.929 565 23 0 4259 4823 687066019 687066583 0.000000e+00 917.0
40 TraesCS1A01G143600 chr3A 97.506 441 8 3 6147 6587 687066581 687067018 0.000000e+00 750.0
41 TraesCS1A01G143600 chr3A 90.946 497 33 7 4945 5429 681143 680647 0.000000e+00 658.0
42 TraesCS1A01G143600 chr3A 96.026 151 6 0 4933 5083 7958336 7958186 6.300000e-61 246.0
43 TraesCS1A01G143600 chr3A 77.912 249 53 2 6340 6588 575126618 575126372 3.930000e-33 154.0
44 TraesCS1A01G143600 chr3A 82.979 141 22 2 279 417 127964011 127964151 8.560000e-25 126.0
45 TraesCS1A01G143600 chr2A 92.365 1336 49 11 4836 6148 691507150 691508455 0.000000e+00 1853.0
46 TraesCS1A01G143600 chr2A 92.000 1325 56 16 4841 6147 489059351 489058059 0.000000e+00 1814.0
47 TraesCS1A01G143600 chr2A 92.498 1253 40 13 4919 6146 458517483 458518706 0.000000e+00 1744.0
48 TraesCS1A01G143600 chr2A 94.925 867 26 4 5292 6146 61811377 61812237 0.000000e+00 1341.0
49 TraesCS1A01G143600 chr2A 95.937 443 17 1 6147 6589 474785291 474784850 0.000000e+00 717.0
50 TraesCS1A01G143600 chr2A 92.719 467 28 5 7656 8117 2283142 2283607 0.000000e+00 669.0
51 TraesCS1A01G143600 chr2A 90.000 400 16 9 4841 5216 626992563 626992962 5.660000e-136 496.0
52 TraesCS1A01G143600 chr2A 95.021 241 12 0 3810 4050 444369651 444369411 5.950000e-101 379.0
53 TraesCS1A01G143600 chr2A 94.239 243 14 0 3809 4051 350400394 350400636 9.960000e-99 372.0
54 TraesCS1A01G143600 chr2A 96.599 147 5 0 4677 4823 474785435 474785289 2.270000e-60 244.0
55 TraesCS1A01G143600 chr5A 92.528 1325 48 15 4841 6146 464849102 464850394 0.000000e+00 1851.0
56 TraesCS1A01G143600 chr5A 90.712 1335 59 15 4859 6146 163522006 163523322 0.000000e+00 1718.0
57 TraesCS1A01G143600 chr5A 90.325 1137 42 17 4829 5927 15105355 15106461 0.000000e+00 1428.0
58 TraesCS1A01G143600 chr5A 84.004 1069 111 31 4841 5873 566944473 566945517 0.000000e+00 972.0
59 TraesCS1A01G143600 chr5A 95.251 358 16 1 6235 6592 638602587 638602943 4.260000e-157 566.0
60 TraesCS1A01G143600 chr5A 88.073 327 35 4 7339 7664 53463142 53462819 1.280000e-102 385.0
61 TraesCS1A01G143600 chr5A 89.961 259 10 4 4841 5083 75910983 75910725 3.660000e-83 320.0
62 TraesCS1A01G143600 chr5A 92.647 136 8 1 7934 8069 653292278 653292411 2.310000e-45 195.0
63 TraesCS1A01G143600 chr7A 91.698 1337 49 17 4841 6146 106705831 106704526 0.000000e+00 1797.0
64 TraesCS1A01G143600 chr7A 91.258 1327 51 25 4841 6146 66429426 66430708 0.000000e+00 1748.0
65 TraesCS1A01G143600 chr7A 87.718 1262 73 34 4841 6065 24514624 24513408 0.000000e+00 1397.0
66 TraesCS1A01G143600 chr7A 84.488 909 92 20 4841 5719 646128701 646129590 0.000000e+00 852.0
67 TraesCS1A01G143600 chr7A 90.796 641 20 13 4841 5466 65905225 65904609 0.000000e+00 821.0
68 TraesCS1A01G143600 chr7A 90.252 318 29 2 7348 7664 125920623 125920307 1.630000e-111 414.0
69 TraesCS1A01G143600 chr7A 88.924 316 33 2 7350 7664 169966714 169967028 9.890000e-104 388.0
70 TraesCS1A01G143600 chr7A 94.239 243 14 0 3810 4052 699150275 699150517 9.960000e-99 372.0
71 TraesCS1A01G143600 chr7A 94.239 243 14 0 3810 4052 722869200 722869442 9.960000e-99 372.0
72 TraesCS1A01G143600 chr7A 92.913 254 16 2 3810 4062 675486369 675486117 1.290000e-97 368.0
73 TraesCS1A01G143600 chr4A 88.342 1381 76 30 4841 6146 131245734 131244364 0.000000e+00 1580.0
74 TraesCS1A01G143600 chr4A 94.466 1030 34 4 5139 6151 131591328 131592351 0.000000e+00 1565.0
75 TraesCS1A01G143600 chr4A 95.349 473 22 0 4351 4823 731196405 731195933 0.000000e+00 752.0
76 TraesCS1A01G143600 chr4A 84.143 700 95 13 5025 5719 627055245 627054557 0.000000e+00 664.0
77 TraesCS1A01G143600 chr4A 93.827 243 15 0 3809 4051 104748741 104748499 4.630000e-97 366.0
78 TraesCS1A01G143600 chr4A 95.217 230 11 0 6147 6376 731195935 731195706 1.670000e-96 364.0
79 TraesCS1A01G143600 chr4A 74.504 655 145 22 1513 2157 662816975 662816333 1.740000e-66 265.0
80 TraesCS1A01G143600 chr4A 92.568 148 6 5 6458 6602 731195718 731195573 2.970000e-49 207.0
81 TraesCS1A01G143600 chr5D 92.317 794 39 8 7345 8117 120610016 120610808 0.000000e+00 1109.0
82 TraesCS1A01G143600 chr5D 94.585 277 12 2 7664 7938 356697226 356697501 7.540000e-115 425.0
83 TraesCS1A01G143600 chr5D 94.585 277 12 2 7664 7938 444479811 444479536 7.540000e-115 425.0
84 TraesCS1A01G143600 chr5D 94.224 277 13 2 7664 7938 438180347 438180072 3.510000e-113 420.0
85 TraesCS1A01G143600 chr5D 90.221 317 29 2 7349 7664 385963166 385962851 5.870000e-111 412.0
86 TraesCS1A01G143600 chr5D 77.828 221 43 6 202 418 217975162 217975380 1.840000e-26 132.0
87 TraesCS1A01G143600 chr5D 100.000 33 0 0 4824 4856 397883355 397883387 2.450000e-05 62.1
88 TraesCS1A01G143600 chr5B 88.691 619 44 6 7345 7938 295583805 295584422 0.000000e+00 732.0
89 TraesCS1A01G143600 chr5B 93.514 185 11 1 7934 8117 295584447 295584631 2.890000e-69 274.0
90 TraesCS1A01G143600 chr5B 74.194 434 98 11 6162 6590 520365936 520365512 1.400000e-37 169.0
91 TraesCS1A01G143600 chr7B 92.137 496 31 5 5030 5520 733021788 733021296 0.000000e+00 693.0
92 TraesCS1A01G143600 chr6B 93.274 446 25 3 5030 5472 52363100 52362657 0.000000e+00 652.0
93 TraesCS1A01G143600 chr6B 93.046 302 15 5 7642 7938 683572203 683572503 3.480000e-118 436.0
94 TraesCS1A01G143600 chr6B 93.443 244 16 0 3808 4051 716477392 716477635 5.990000e-96 363.0
95 TraesCS1A01G143600 chr6B 91.892 185 13 2 7934 8117 683572528 683572711 2.910000e-64 257.0
96 TraesCS1A01G143600 chr6B 93.023 43 3 0 4128 4170 145574233 145574275 6.810000e-06 63.9
97 TraesCS1A01G143600 chr6D 90.566 318 28 2 7348 7664 140222445 140222761 3.510000e-113 420.0
98 TraesCS1A01G143600 chr6D 92.469 239 18 0 3812 4050 444480053 444480291 7.810000e-90 342.0
99 TraesCS1A01G143600 chr6D 91.093 247 21 1 3809 4054 362538241 362537995 4.700000e-87 333.0
100 TraesCS1A01G143600 chr6D 91.057 246 21 1 3810 4054 295271052 295270807 1.690000e-86 331.0
101 TraesCS1A01G143600 chr6D 80.465 215 39 3 202 415 471192204 471191992 2.350000e-35 161.0
102 TraesCS1A01G143600 chr6D 81.818 176 23 5 206 374 86805785 86805612 1.100000e-28 139.0
103 TraesCS1A01G143600 chr3B 89.623 318 31 2 7348 7664 593930588 593930904 3.530000e-108 403.0
104 TraesCS1A01G143600 chr3B 94.628 242 13 0 3809 4050 497096333 497096574 7.700000e-100 375.0
105 TraesCS1A01G143600 chr3B 94.215 242 14 0 3809 4050 742450160 742449919 3.580000e-98 370.0
106 TraesCS1A01G143600 chr3B 93.827 243 15 0 3810 4052 12174775 12175017 4.630000e-97 366.0
107 TraesCS1A01G143600 chr4B 89.557 316 30 3 7350 7664 73657697 73658010 1.640000e-106 398.0
108 TraesCS1A01G143600 chr4B 92.353 170 12 1 7949 8117 403672957 403672788 2.930000e-59 241.0
109 TraesCS1A01G143600 chr4B 79.730 222 33 8 202 417 107666611 107666826 5.080000e-32 150.0
110 TraesCS1A01G143600 chr2B 92.829 251 16 2 3809 4058 22017501 22017252 5.990000e-96 363.0
111 TraesCS1A01G143600 chr2B 81.019 216 39 1 203 418 5477883 5477670 3.900000e-38 171.0
112 TraesCS1A01G143600 chr2B 80.645 124 21 3 203 325 763474428 763474549 8.680000e-15 93.5
113 TraesCS1A01G143600 chrUn 92.946 241 17 0 3810 4050 40975050 40974810 1.300000e-92 351.0
114 TraesCS1A01G143600 chrUn 90.299 268 22 4 3794 4059 266580234 266579969 1.680000e-91 348.0
115 TraesCS1A01G143600 chrUn 91.322 242 21 0 3810 4051 146916050 146915809 1.690000e-86 331.0
116 TraesCS1A01G143600 chrUn 91.322 242 21 0 3810 4051 154099384 154099143 1.690000e-86 331.0
117 TraesCS1A01G143600 chrUn 91.322 242 21 0 3810 4051 380274480 380274239 1.690000e-86 331.0
118 TraesCS1A01G143600 chrUn 91.286 241 21 0 3810 4050 351322627 351322387 6.080000e-86 329.0
119 TraesCS1A01G143600 chrUn 90.909 242 22 0 3810 4051 147061721 147061480 7.860000e-85 326.0
120 TraesCS1A01G143600 chrUn 92.353 170 11 2 7949 8117 124659209 124659041 2.930000e-59 241.0
121 TraesCS1A01G143600 chr7D 81.308 214 34 5 208 417 58907440 58907651 1.400000e-37 169.0
122 TraesCS1A01G143600 chr7D 80.180 222 33 8 204 417 26835720 26835502 1.090000e-33 156.0
123 TraesCS1A01G143600 chr2D 92.958 71 5 0 8047 8117 35555482 35555412 4.010000e-18 104.0
124 TraesCS1A01G143600 chr2D 77.049 183 24 10 202 381 626109938 626109771 1.120000e-13 89.8
125 TraesCS1A01G143600 chr2D 97.143 35 1 0 4822 4856 72957957 72957923 8.810000e-05 60.2
126 TraesCS1A01G143600 chr2D 97.059 34 1 0 4823 4856 646416945 646416912 3.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G143600 chr1A 248428233 248436357 8124 True 7284.0 13256 100.0000 1 8125 2 chr1A.!!$R6 8124
1 TraesCS1A01G143600 chr1A 493433922 493435219 1297 False 1840.0 1840 92.3250 4841 6146 1 chr1A.!!$F4 1305
2 TraesCS1A01G143600 chr1A 125152862 125153645 783 False 1003.0 1003 90.2040 7349 8112 1 chr1A.!!$F2 763
3 TraesCS1A01G143600 chr1A 589990056 589990651 595 False 501.0 743 97.2195 4675 6596 2 chr1A.!!$F6 1921
4 TraesCS1A01G143600 chr1D 197736529 197742147 5618 True 1323.0 3325 91.0685 1 7349 4 chr1D.!!$R2 7348
5 TraesCS1A01G143600 chr1D 450146352 450147141 789 False 628.0 628 81.2350 5025 5827 1 chr1D.!!$F1 802
6 TraesCS1A01G143600 chr1B 277766013 277770792 4779 True 837.0 3011 89.1092 3 7349 5 chr1B.!!$R2 7346
7 TraesCS1A01G143600 chr1B 677376873 677377502 629 False 797.0 797 90.0320 4910 5520 1 chr1B.!!$F2 610
8 TraesCS1A01G143600 chr6A 584126285 584127579 1294 True 1886.0 1886 92.9920 4841 6146 1 chr6A.!!$R3 1305
9 TraesCS1A01G143600 chr6A 607591016 607592337 1321 False 1724.0 1724 90.5290 4841 6146 1 chr6A.!!$F4 1305
10 TraesCS1A01G143600 chr6A 940411 941274 863 False 1321.0 1321 94.4830 5292 6146 1 chr6A.!!$F1 854
11 TraesCS1A01G143600 chr6A 132418735 132419674 939 False 743.0 743 81.3080 5025 5969 1 chr6A.!!$F2 944
12 TraesCS1A01G143600 chr3A 15882054 15883347 1293 True 1869.0 1869 92.7440 4841 6147 1 chr3A.!!$R3 1306
13 TraesCS1A01G143600 chr3A 143390275 143391572 1297 True 1799.0 1799 91.7540 4841 6150 1 chr3A.!!$R4 1309
14 TraesCS1A01G143600 chr3A 582441833 582442610 777 False 1013.0 1013 90.3850 7349 8117 1 chr3A.!!$F2 768
15 TraesCS1A01G143600 chr3A 687066019 687067018 999 False 833.5 917 96.7175 4259 6587 2 chr3A.!!$F3 2328
16 TraesCS1A01G143600 chr2A 691507150 691508455 1305 False 1853.0 1853 92.3650 4836 6148 1 chr2A.!!$F6 1312
17 TraesCS1A01G143600 chr2A 489058059 489059351 1292 True 1814.0 1814 92.0000 4841 6147 1 chr2A.!!$R2 1306
18 TraesCS1A01G143600 chr2A 458517483 458518706 1223 False 1744.0 1744 92.4980 4919 6146 1 chr2A.!!$F4 1227
19 TraesCS1A01G143600 chr2A 61811377 61812237 860 False 1341.0 1341 94.9250 5292 6146 1 chr2A.!!$F2 854
20 TraesCS1A01G143600 chr2A 474784850 474785435 585 True 480.5 717 96.2680 4677 6589 2 chr2A.!!$R3 1912
21 TraesCS1A01G143600 chr5A 464849102 464850394 1292 False 1851.0 1851 92.5280 4841 6146 1 chr5A.!!$F3 1305
22 TraesCS1A01G143600 chr5A 163522006 163523322 1316 False 1718.0 1718 90.7120 4859 6146 1 chr5A.!!$F2 1287
23 TraesCS1A01G143600 chr5A 15105355 15106461 1106 False 1428.0 1428 90.3250 4829 5927 1 chr5A.!!$F1 1098
24 TraesCS1A01G143600 chr5A 566944473 566945517 1044 False 972.0 972 84.0040 4841 5873 1 chr5A.!!$F4 1032
25 TraesCS1A01G143600 chr7A 106704526 106705831 1305 True 1797.0 1797 91.6980 4841 6146 1 chr7A.!!$R3 1305
26 TraesCS1A01G143600 chr7A 66429426 66430708 1282 False 1748.0 1748 91.2580 4841 6146 1 chr7A.!!$F1 1305
27 TraesCS1A01G143600 chr7A 24513408 24514624 1216 True 1397.0 1397 87.7180 4841 6065 1 chr7A.!!$R1 1224
28 TraesCS1A01G143600 chr7A 646128701 646129590 889 False 852.0 852 84.4880 4841 5719 1 chr7A.!!$F3 878
29 TraesCS1A01G143600 chr7A 65904609 65905225 616 True 821.0 821 90.7960 4841 5466 1 chr7A.!!$R2 625
30 TraesCS1A01G143600 chr4A 131244364 131245734 1370 True 1580.0 1580 88.3420 4841 6146 1 chr4A.!!$R2 1305
31 TraesCS1A01G143600 chr4A 131591328 131592351 1023 False 1565.0 1565 94.4660 5139 6151 1 chr4A.!!$F1 1012
32 TraesCS1A01G143600 chr4A 627054557 627055245 688 True 664.0 664 84.1430 5025 5719 1 chr4A.!!$R3 694
33 TraesCS1A01G143600 chr4A 731195573 731196405 832 True 441.0 752 94.3780 4351 6602 3 chr4A.!!$R5 2251
34 TraesCS1A01G143600 chr4A 662816333 662816975 642 True 265.0 265 74.5040 1513 2157 1 chr4A.!!$R4 644
35 TraesCS1A01G143600 chr5D 120610016 120610808 792 False 1109.0 1109 92.3170 7345 8117 1 chr5D.!!$F1 772
36 TraesCS1A01G143600 chr5B 295583805 295584631 826 False 503.0 732 91.1025 7345 8117 2 chr5B.!!$F1 772
37 TraesCS1A01G143600 chr6B 683572203 683572711 508 False 346.5 436 92.4690 7642 8117 2 chr6B.!!$F3 475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1008 0.247460 CAACTGCATCTCCACTCCGA 59.753 55.0 0.00 0.0 0.00 4.55 F
1029 1070 0.106015 CCCCCAAATCCACCCTCATC 60.106 60.0 0.00 0.0 0.00 2.92 F
2706 2834 0.033366 ATCGTGCTTTTTGGTTGGGC 59.967 50.0 0.00 0.0 0.00 5.36 F
3978 4758 0.036164 TCCCACCACAATCGGTCTTG 59.964 55.0 0.00 0.0 37.07 3.02 F
3979 4759 0.036164 CCCACCACAATCGGTCTTGA 59.964 55.0 1.23 0.0 37.07 3.02 F
4115 4928 0.179004 TGCGTCCCACCACTTCAATT 60.179 50.0 0.00 0.0 0.00 2.32 F
4252 5710 0.249398 AGCGGGAGTTAATTGAGCGT 59.751 50.0 0.00 0.0 0.00 5.07 F
4823 6281 0.250770 AAAAGGAGGAGCCGGTGTTC 60.251 55.0 1.90 0.0 43.43 3.18 F
5986 7833 0.107654 GCATCGCACCCTTTAGTCCT 60.108 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 2203 0.519077 GCACGGCAAGAGAAAAGAGG 59.481 55.000 0.00 0.0 0.00 3.69 R
2978 3106 0.250513 ACGAGACATTTCAGCCCCTC 59.749 55.000 0.00 0.0 0.00 4.30 R
4052 4832 0.028637 GACCGCTACCGTGCTACTAC 59.971 60.000 0.00 0.0 0.00 2.73 R
4837 6295 0.546988 AGAACCGGGACTAAAGGCCT 60.547 55.000 6.32 0.0 0.00 5.19 R
4857 6315 1.153025 GGCCATTAGTCCCGGTTCC 60.153 63.158 0.00 0.0 0.00 3.62 R
5890 7720 2.440599 GGTGCCACCAACCAGGAT 59.559 61.111 9.55 0.0 41.22 3.24 R
5954 7790 2.595095 GATGCCCATTGGTCCCGA 59.405 61.111 1.20 0.0 0.00 5.14 R
6658 8505 0.030908 CCCTACGTTCTCTCATCGCC 59.969 60.000 0.00 0.0 0.00 5.54 R
7418 9480 0.246360 ACGTGTCGCTTGATGGATGA 59.754 50.000 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 143 1.176527 AACCCAAGATGATTGTGCGG 58.823 50.000 0.00 0.00 0.00 5.69
247 250 1.730064 GCACGAAGCAATTCCGTTCTA 59.270 47.619 0.00 0.00 44.79 2.10
261 264 7.979444 ATTCCGTTCTAACTTTCTTTGATGA 57.021 32.000 0.00 0.00 0.00 2.92
263 266 6.285224 TCCGTTCTAACTTTCTTTGATGACA 58.715 36.000 0.00 0.00 0.00 3.58
274 277 9.574516 ACTTTCTTTGATGACAGGTTTAGTTAT 57.425 29.630 0.00 0.00 0.00 1.89
277 280 8.777865 TCTTTGATGACAGGTTTAGTTATCTG 57.222 34.615 0.00 0.00 34.27 2.90
285 288 6.879400 ACAGGTTTAGTTATCTGAGGATGAC 58.121 40.000 0.00 0.00 38.32 3.06
286 289 6.440647 ACAGGTTTAGTTATCTGAGGATGACA 59.559 38.462 0.00 0.00 39.83 3.58
287 290 7.038302 ACAGGTTTAGTTATCTGAGGATGACAA 60.038 37.037 0.00 0.00 39.83 3.18
288 291 7.278868 CAGGTTTAGTTATCTGAGGATGACAAC 59.721 40.741 0.00 0.00 39.83 3.32
289 292 7.181125 AGGTTTAGTTATCTGAGGATGACAACT 59.819 37.037 0.00 0.00 39.83 3.16
290 293 7.824779 GGTTTAGTTATCTGAGGATGACAACTT 59.175 37.037 0.00 0.00 39.83 2.66
291 294 9.220767 GTTTAGTTATCTGAGGATGACAACTTT 57.779 33.333 0.00 0.00 39.83 2.66
294 297 8.140112 AGTTATCTGAGGATGACAACTTTAGT 57.860 34.615 0.00 0.00 39.83 2.24
295 298 8.598041 AGTTATCTGAGGATGACAACTTTAGTT 58.402 33.333 0.00 0.00 39.83 2.24
296 299 9.871238 GTTATCTGAGGATGACAACTTTAGTTA 57.129 33.333 0.00 0.00 38.05 2.24
298 301 8.954950 ATCTGAGGATGACAACTTTAGTTATG 57.045 34.615 0.00 0.00 36.32 1.90
299 302 8.134202 TCTGAGGATGACAACTTTAGTTATGA 57.866 34.615 0.00 0.00 36.32 2.15
306 309 7.977789 TGACAACTTTAGTTATGAAGCATGA 57.022 32.000 0.00 0.00 36.32 3.07
390 395 2.871096 AAAACATGAGAGCGGGGTTA 57.129 45.000 0.00 0.00 0.00 2.85
392 397 0.252197 AACATGAGAGCGGGGTTACC 59.748 55.000 0.00 0.00 0.00 2.85
403 408 1.271163 CGGGGTTACCTTGTGTCACAT 60.271 52.381 6.48 0.00 36.97 3.21
404 409 2.027929 CGGGGTTACCTTGTGTCACATA 60.028 50.000 6.48 0.00 36.97 2.29
409 414 4.394920 GGTTACCTTGTGTCACATATGTGG 59.605 45.833 30.56 17.84 45.65 4.17
420 428 5.833406 TCACATATGTGGCACTTATTTGG 57.167 39.130 30.56 17.48 45.65 3.28
530 562 0.897621 CCCAAACATTCCCCTTCTGC 59.102 55.000 0.00 0.00 0.00 4.26
589 625 4.635473 AGATTCCAAATCACCTCCCTCTA 58.365 43.478 2.79 0.00 0.00 2.43
610 646 1.308326 CTCCCGTCTCCTCTTCCCT 59.692 63.158 0.00 0.00 0.00 4.20
613 649 0.324830 CCCGTCTCCTCTTCCCTTCT 60.325 60.000 0.00 0.00 0.00 2.85
614 650 1.107945 CCGTCTCCTCTTCCCTTCTC 58.892 60.000 0.00 0.00 0.00 2.87
615 651 1.341581 CCGTCTCCTCTTCCCTTCTCT 60.342 57.143 0.00 0.00 0.00 3.10
616 652 2.021457 CGTCTCCTCTTCCCTTCTCTC 58.979 57.143 0.00 0.00 0.00 3.20
617 653 2.356741 CGTCTCCTCTTCCCTTCTCTCT 60.357 54.545 0.00 0.00 0.00 3.10
618 654 3.288092 GTCTCCTCTTCCCTTCTCTCTC 58.712 54.545 0.00 0.00 0.00 3.20
619 655 3.053619 GTCTCCTCTTCCCTTCTCTCTCT 60.054 52.174 0.00 0.00 0.00 3.10
620 656 3.202151 TCTCCTCTTCCCTTCTCTCTCTC 59.798 52.174 0.00 0.00 0.00 3.20
621 657 3.197983 TCCTCTTCCCTTCTCTCTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
622 658 3.202151 TCCTCTTCCCTTCTCTCTCTCTC 59.798 52.174 0.00 0.00 0.00 3.20
623 659 3.203040 CCTCTTCCCTTCTCTCTCTCTCT 59.797 52.174 0.00 0.00 0.00 3.10
624 660 4.455606 CTCTTCCCTTCTCTCTCTCTCTC 58.544 52.174 0.00 0.00 0.00 3.20
625 661 4.111577 TCTTCCCTTCTCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
626 662 4.164221 TCTTCCCTTCTCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
627 663 3.736094 TCCCTTCTCTCTCTCTCTCTCT 58.264 50.000 0.00 0.00 0.00 3.10
628 664 3.711704 TCCCTTCTCTCTCTCTCTCTCTC 59.288 52.174 0.00 0.00 0.00 3.20
629 665 3.713764 CCCTTCTCTCTCTCTCTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
630 666 4.202305 CCCTTCTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
631 667 4.653341 CCTTCTCTCTCTCTCTCTCTCTCT 59.347 50.000 0.00 0.00 0.00 3.10
649 685 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
972 1008 0.247460 CAACTGCATCTCCACTCCGA 59.753 55.000 0.00 0.00 0.00 4.55
1029 1070 0.106015 CCCCCAAATCCACCCTCATC 60.106 60.000 0.00 0.00 0.00 2.92
1045 1086 1.138568 CATCATCTTGCTCCTCCCCT 58.861 55.000 0.00 0.00 0.00 4.79
1062 1103 3.249189 TTCCTGTTGCTCGGGGCT 61.249 61.111 0.00 0.00 42.62 5.19
1164 1205 1.290203 TCCTCGAAATCTCGCAATGC 58.710 50.000 0.00 0.00 45.04 3.56
1448 1489 2.505557 GGCGGTCCGTTCTACGTG 60.506 66.667 13.94 0.00 40.58 4.49
1757 1799 4.789075 CACTACGGGTGGCGGACG 62.789 72.222 3.35 0.00 41.90 4.79
2183 2225 1.507141 CTTTTCTCTTGCCGTGCCGT 61.507 55.000 0.00 0.00 0.00 5.68
2252 2303 1.873591 GCCGAGTTCTTCTGCTTTCAA 59.126 47.619 0.00 0.00 33.68 2.69
2295 2355 3.510559 TTTTGGGCGGTGGTACCCC 62.511 63.158 10.07 9.37 46.43 4.95
2339 2399 2.878406 CGTGACCATTGTCCTGTTCTTT 59.122 45.455 0.00 0.00 41.01 2.52
2348 2408 2.076863 GTCCTGTTCTTTCATGTCCCG 58.923 52.381 0.00 0.00 0.00 5.14
2390 2454 1.590147 CGCTAGAAAGTGGTCCGGT 59.410 57.895 0.00 0.00 0.00 5.28
2440 2507 6.417191 TTCTGCGGTTATTTTGCTAGTTAG 57.583 37.500 0.00 0.00 0.00 2.34
2509 2589 5.230182 TGATCGATGAATGTGCATAGTACC 58.770 41.667 0.54 0.00 0.00 3.34
2527 2609 2.192263 ACCACCCCATCTCTCTCTTTC 58.808 52.381 0.00 0.00 0.00 2.62
2534 2616 3.056536 CCCATCTCTCTCTTTCGTGTTGA 60.057 47.826 0.00 0.00 0.00 3.18
2550 2632 7.117285 TCGTGTTGATAGTAGTAGTAGGAGA 57.883 40.000 0.00 0.00 0.00 3.71
2590 2693 3.923017 AAAGGTGGCTTCTTCGATTTG 57.077 42.857 0.00 0.00 0.00 2.32
2693 2820 6.795593 CAGATAATGTGAATGAATGATCGTGC 59.204 38.462 0.00 0.00 0.00 5.34
2696 2823 5.571784 ATGTGAATGAATGATCGTGCTTT 57.428 34.783 0.00 0.00 0.00 3.51
2706 2834 0.033366 ATCGTGCTTTTTGGTTGGGC 59.967 50.000 0.00 0.00 0.00 5.36
2708 2836 0.671251 CGTGCTTTTTGGTTGGGCTA 59.329 50.000 0.00 0.00 0.00 3.93
2894 3022 1.517257 CGTCGACCAGCTCACCATC 60.517 63.158 10.58 0.00 0.00 3.51
2953 3081 1.729267 TTCCCTTCCCTTGGCTTGCT 61.729 55.000 0.00 0.00 0.00 3.91
2954 3082 1.228988 CCCTTCCCTTGGCTTGCTT 60.229 57.895 0.00 0.00 0.00 3.91
2976 3104 1.514553 GTCTACTACGTGGGTGGGC 59.485 63.158 3.26 0.00 0.00 5.36
2978 3106 3.069946 TACTACGTGGGTGGGCCG 61.070 66.667 3.26 0.00 34.97 6.13
2979 3107 3.582242 TACTACGTGGGTGGGCCGA 62.582 63.158 3.26 0.00 34.97 5.54
3150 3282 1.671379 GCCTTCCTCCAACGGACAC 60.671 63.158 0.00 0.00 31.44 3.67
3236 3374 1.404047 CCGCGCCTGGAATCAAATTTT 60.404 47.619 0.00 0.00 0.00 1.82
3238 3376 2.001872 GCGCCTGGAATCAAATTTTGG 58.998 47.619 9.18 0.00 0.00 3.28
3247 3385 7.829211 CCTGGAATCAAATTTTGGTCTACTCTA 59.171 37.037 9.18 0.00 0.00 2.43
3282 3420 1.663695 AACACCGTTTCTGTCCTGTG 58.336 50.000 0.00 0.00 0.00 3.66
3283 3421 0.814010 ACACCGTTTCTGTCCTGTGC 60.814 55.000 0.00 0.00 0.00 4.57
3288 3426 1.670811 CGTTTCTGTCCTGTGCTGTTT 59.329 47.619 0.00 0.00 0.00 2.83
3290 3428 2.418368 TTCTGTCCTGTGCTGTTTGT 57.582 45.000 0.00 0.00 0.00 2.83
3293 3431 2.682856 TCTGTCCTGTGCTGTTTGTTTC 59.317 45.455 0.00 0.00 0.00 2.78
3297 3435 1.402787 CTGTGCTGTTTGTTTCCCCT 58.597 50.000 0.00 0.00 0.00 4.79
3319 3457 2.171567 CTGCACGCAGAAATCATTTCG 58.828 47.619 13.87 1.63 46.30 3.46
3328 3466 1.405463 GAAATCATTTCGTCCCTGGCC 59.595 52.381 0.00 0.00 0.00 5.36
3351 3489 2.740714 GAATGCACACGCGAGGACC 61.741 63.158 15.93 0.00 42.97 4.46
3428 3595 1.368641 TGTCGGCGATTCAGGATTTG 58.631 50.000 14.79 0.00 0.00 2.32
3456 4174 1.258458 CGCGGGCGTCGATTTATTTTA 59.742 47.619 4.64 0.00 42.43 1.52
3481 4203 2.670019 AATAATTAACCCGGGCCTCC 57.330 50.000 24.08 0.00 0.00 4.30
3495 4217 1.817209 CCTCCGCCTCAAGGTACTC 59.183 63.158 0.00 0.00 38.49 2.59
3498 4220 0.251653 TCCGCCTCAAGGTACTCACT 60.252 55.000 0.00 0.00 38.49 3.41
3500 4222 1.178276 CGCCTCAAGGTACTCACTCT 58.822 55.000 0.00 0.00 38.49 3.24
3505 4227 4.021368 GCCTCAAGGTACTCACTCTGTTTA 60.021 45.833 0.00 0.00 38.49 2.01
3506 4228 5.510861 GCCTCAAGGTACTCACTCTGTTTAA 60.511 44.000 0.00 0.00 38.49 1.52
3514 4236 5.597813 ACTCACTCTGTTTAAAAGCATCG 57.402 39.130 0.00 0.00 0.00 3.84
3530 4252 3.894097 CGCGTACGCCGTGCTAAC 61.894 66.667 32.64 4.17 40.62 2.34
3531 4253 2.505557 GCGTACGCCGTGCTAACT 60.506 61.111 29.51 0.00 39.32 2.24
3533 4255 0.593263 GCGTACGCCGTGCTAACTAT 60.593 55.000 29.51 0.00 39.32 2.12
3534 4256 1.334059 GCGTACGCCGTGCTAACTATA 60.334 52.381 29.51 0.00 39.32 1.31
3535 4257 2.301787 CGTACGCCGTGCTAACTATAC 58.698 52.381 0.52 0.00 0.00 1.47
3536 4258 2.032549 CGTACGCCGTGCTAACTATACT 60.033 50.000 0.52 0.00 0.00 2.12
3537 4259 2.486951 ACGCCGTGCTAACTATACTG 57.513 50.000 0.00 0.00 0.00 2.74
3540 4262 2.604855 CGCCGTGCTAACTATACTGGAG 60.605 54.545 0.00 0.00 0.00 3.86
3541 4263 2.361438 GCCGTGCTAACTATACTGGAGT 59.639 50.000 0.00 0.00 0.00 3.85
3542 4264 3.567164 GCCGTGCTAACTATACTGGAGTA 59.433 47.826 0.00 0.00 34.67 2.59
3543 4265 4.320348 GCCGTGCTAACTATACTGGAGTAG 60.320 50.000 0.00 0.00 33.52 2.57
3573 4307 3.511934 AGAGTTAAACTGCGAGTCCTCAT 59.488 43.478 0.00 0.00 0.00 2.90
3606 4356 2.631545 GACCACTACAGGGTACAAGTGT 59.368 50.000 0.00 0.00 39.19 3.55
3610 4360 4.082354 CCACTACAGGGTACAAGTGTAGAC 60.082 50.000 24.36 0.00 44.32 2.59
3612 4362 5.010314 CACTACAGGGTACAAGTGTAGACAA 59.990 44.000 24.36 0.42 44.32 3.18
3614 4364 5.562298 ACAGGGTACAAGTGTAGACAAAT 57.438 39.130 0.00 0.00 0.00 2.32
3634 4412 2.124570 ATGGCACTCGCATGGGTC 60.125 61.111 9.86 0.00 41.24 4.46
3635 4413 4.758251 TGGCACTCGCATGGGTCG 62.758 66.667 9.86 5.11 41.24 4.79
3640 4418 2.125552 CTCGCATGGGTCGAAGCA 60.126 61.111 9.86 0.00 35.38 3.91
3679 4457 1.044790 TGAGAGCGCCATCATCCAGA 61.045 55.000 2.29 0.00 0.00 3.86
3681 4459 1.047596 AGAGCGCCATCATCCAGACT 61.048 55.000 2.29 0.00 0.00 3.24
3692 4470 3.476386 CCAGACTGTGGTGGCTCT 58.524 61.111 0.93 0.00 42.17 4.09
3741 4519 4.154195 CGTCAAACCAAGAGAAATAGTGGG 59.846 45.833 0.00 0.00 35.32 4.61
3756 4534 1.676006 AGTGGGCGTGTTCTTTTCTTG 59.324 47.619 0.00 0.00 0.00 3.02
3787 4567 2.165319 AAAGGAACGTCTGTGCTACC 57.835 50.000 0.00 0.00 0.00 3.18
3799 4579 0.608640 GTGCTACCACTGGCTACTGT 59.391 55.000 0.00 0.00 38.93 3.55
3800 4580 0.608130 TGCTACCACTGGCTACTGTG 59.392 55.000 0.00 0.00 43.68 3.66
3801 4581 0.741221 GCTACCACTGGCTACTGTGC 60.741 60.000 0.00 0.00 42.99 4.57
3802 4582 0.898320 CTACCACTGGCTACTGTGCT 59.102 55.000 0.00 0.00 42.99 4.40
3803 4583 2.100197 CTACCACTGGCTACTGTGCTA 58.900 52.381 0.00 0.00 42.99 3.49
3804 4584 0.608640 ACCACTGGCTACTGTGCTAC 59.391 55.000 0.00 0.00 42.99 3.58
3805 4585 0.108138 CCACTGGCTACTGTGCTACC 60.108 60.000 0.00 0.00 42.99 3.18
3807 4587 0.611062 ACTGGCTACTGTGCTACCGA 60.611 55.000 0.00 0.00 0.00 4.69
3809 4589 0.611062 TGGCTACTGTGCTACCGAGT 60.611 55.000 0.00 0.00 0.00 4.18
3810 4590 1.340308 TGGCTACTGTGCTACCGAGTA 60.340 52.381 0.00 0.00 0.00 2.59
3811 4591 1.065251 GGCTACTGTGCTACCGAGTAC 59.935 57.143 0.00 0.00 38.67 2.73
3812 4592 2.015587 GCTACTGTGCTACCGAGTACT 58.984 52.381 0.00 0.00 38.95 2.73
3813 4593 2.031930 GCTACTGTGCTACCGAGTACTC 59.968 54.545 13.18 13.18 38.95 2.59
3814 4594 1.461559 ACTGTGCTACCGAGTACTCC 58.538 55.000 17.23 3.32 38.95 3.85
3817 4597 1.023502 GTGCTACCGAGTACTCCCTC 58.976 60.000 17.23 3.27 35.56 4.30
3818 4598 0.106819 TGCTACCGAGTACTCCCTCC 60.107 60.000 17.23 3.20 0.00 4.30
3819 4599 0.106819 GCTACCGAGTACTCCCTCCA 60.107 60.000 17.23 0.00 0.00 3.86
3820 4600 1.479021 GCTACCGAGTACTCCCTCCAT 60.479 57.143 17.23 0.00 0.00 3.41
3821 4601 2.946785 CTACCGAGTACTCCCTCCATT 58.053 52.381 17.23 0.00 0.00 3.16
3822 4602 1.777941 ACCGAGTACTCCCTCCATTC 58.222 55.000 17.23 0.00 0.00 2.67
3823 4603 1.288335 ACCGAGTACTCCCTCCATTCT 59.712 52.381 17.23 0.00 0.00 2.40
3826 4606 3.958798 CCGAGTACTCCCTCCATTCTAAA 59.041 47.826 17.23 0.00 0.00 1.85
3828 4608 5.070580 CCGAGTACTCCCTCCATTCTAAAAT 59.929 44.000 17.23 0.00 0.00 1.82
3829 4609 6.267014 CCGAGTACTCCCTCCATTCTAAAATA 59.733 42.308 17.23 0.00 0.00 1.40
3830 4610 7.038941 CCGAGTACTCCCTCCATTCTAAAATAT 60.039 40.741 17.23 0.00 0.00 1.28
3831 4611 9.021807 CGAGTACTCCCTCCATTCTAAAATATA 57.978 37.037 17.23 0.00 0.00 0.86
3833 4613 9.900112 AGTACTCCCTCCATTCTAAAATATAGT 57.100 33.333 0.00 0.00 0.00 2.12
3834 4614 9.930693 GTACTCCCTCCATTCTAAAATATAGTG 57.069 37.037 0.00 0.00 0.00 2.74
3835 4615 7.454225 ACTCCCTCCATTCTAAAATATAGTGC 58.546 38.462 0.00 0.00 0.00 4.40
3836 4616 6.464222 TCCCTCCATTCTAAAATATAGTGCG 58.536 40.000 0.00 0.00 0.00 5.34
3837 4617 5.122396 CCCTCCATTCTAAAATATAGTGCGC 59.878 44.000 0.00 0.00 0.00 6.09
3838 4618 5.122396 CCTCCATTCTAAAATATAGTGCGCC 59.878 44.000 4.18 0.00 0.00 6.53
3839 4619 5.865085 TCCATTCTAAAATATAGTGCGCCT 58.135 37.500 4.18 3.99 0.00 5.52
3840 4620 5.700832 TCCATTCTAAAATATAGTGCGCCTG 59.299 40.000 4.18 0.00 0.00 4.85
3841 4621 5.385617 CATTCTAAAATATAGTGCGCCTGC 58.614 41.667 4.18 0.00 43.20 4.85
3854 4634 4.821589 CCTGCGCTTCCCGAGGTC 62.822 72.222 9.73 0.00 40.02 3.85
3855 4635 4.821589 CTGCGCTTCCCGAGGTCC 62.822 72.222 9.73 0.00 40.02 4.46
3857 4637 4.388499 GCGCTTCCCGAGGTCCAA 62.388 66.667 0.00 0.00 40.02 3.53
3858 4638 2.434359 CGCTTCCCGAGGTCCAAC 60.434 66.667 0.00 0.00 40.02 3.77
3859 4639 2.943978 CGCTTCCCGAGGTCCAACT 61.944 63.158 0.00 0.00 40.02 3.16
3860 4640 1.375326 GCTTCCCGAGGTCCAACTT 59.625 57.895 0.00 0.00 0.00 2.66
3861 4641 0.250770 GCTTCCCGAGGTCCAACTTT 60.251 55.000 0.00 0.00 0.00 2.66
3862 4642 1.523758 CTTCCCGAGGTCCAACTTTG 58.476 55.000 0.00 0.00 0.00 2.77
3863 4643 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
3864 4644 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
3865 4645 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
3866 4646 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
3867 4647 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
3868 4648 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
3869 4649 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
3870 4650 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
3871 4651 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
3872 4652 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
3873 4653 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
3874 4654 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
3875 4655 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
3876 4656 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
3877 4657 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
3878 4658 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
3879 4659 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
3880 4660 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
3881 4661 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
3882 4662 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
3883 4663 8.414778 ACTTTGACCATAAATTTAACCAACGAA 58.585 29.630 1.21 0.22 0.00 3.85
3884 4664 9.250624 CTTTGACCATAAATTTAACCAACGAAA 57.749 29.630 1.21 0.00 0.00 3.46
3885 4665 8.576936 TTGACCATAAATTTAACCAACGAAAC 57.423 30.769 1.21 0.00 0.00 2.78
3886 4666 7.146648 TGACCATAAATTTAACCAACGAAACC 58.853 34.615 1.21 0.00 0.00 3.27
3887 4667 7.052142 ACCATAAATTTAACCAACGAAACCA 57.948 32.000 1.21 0.00 0.00 3.67
3888 4668 7.498443 ACCATAAATTTAACCAACGAAACCAA 58.502 30.769 1.21 0.00 0.00 3.67
3889 4669 7.438757 ACCATAAATTTAACCAACGAAACCAAC 59.561 33.333 1.21 0.00 0.00 3.77
3890 4670 7.654116 CCATAAATTTAACCAACGAAACCAACT 59.346 33.333 1.21 0.00 0.00 3.16
3891 4671 6.895607 AAATTTAACCAACGAAACCAACTG 57.104 33.333 0.00 0.00 0.00 3.16
3892 4672 3.423996 TTAACCAACGAAACCAACTGC 57.576 42.857 0.00 0.00 0.00 4.40
3893 4673 0.099791 AACCAACGAAACCAACTGCG 59.900 50.000 0.00 0.00 0.00 5.18
3894 4674 1.008995 CCAACGAAACCAACTGCGG 60.009 57.895 0.00 0.00 0.00 5.69
3895 4675 1.657181 CAACGAAACCAACTGCGGC 60.657 57.895 0.00 0.00 0.00 6.53
3896 4676 3.175976 AACGAAACCAACTGCGGCG 62.176 57.895 0.51 0.51 0.00 6.46
3897 4677 4.383602 CGAAACCAACTGCGGCGG 62.384 66.667 9.78 7.39 0.00 6.13
3898 4678 4.038080 GAAACCAACTGCGGCGGG 62.038 66.667 14.26 2.79 0.00 6.13
3899 4679 4.572571 AAACCAACTGCGGCGGGA 62.573 61.111 14.26 0.00 0.00 5.14
3902 4682 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
3903 4683 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
3904 4684 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
3905 4685 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
3945 4725 9.450807 AAACTTCTTTCGAATACAAATTCACTG 57.549 29.630 0.00 0.00 41.44 3.66
3946 4726 8.378172 ACTTCTTTCGAATACAAATTCACTGA 57.622 30.769 0.00 0.00 41.44 3.41
3947 4727 9.003658 ACTTCTTTCGAATACAAATTCACTGAT 57.996 29.630 0.00 0.00 41.44 2.90
3962 4742 9.822185 AAATTCACTGATATAATTTTTGCTCCC 57.178 29.630 0.00 0.00 30.62 4.30
3963 4743 7.953005 TTCACTGATATAATTTTTGCTCCCA 57.047 32.000 0.00 0.00 0.00 4.37
3964 4744 7.333528 TCACTGATATAATTTTTGCTCCCAC 57.666 36.000 0.00 0.00 0.00 4.61
3965 4745 6.321181 TCACTGATATAATTTTTGCTCCCACC 59.679 38.462 0.00 0.00 0.00 4.61
3966 4746 6.096705 CACTGATATAATTTTTGCTCCCACCA 59.903 38.462 0.00 0.00 0.00 4.17
3967 4747 6.096846 ACTGATATAATTTTTGCTCCCACCAC 59.903 38.462 0.00 0.00 0.00 4.16
3968 4748 5.954752 TGATATAATTTTTGCTCCCACCACA 59.045 36.000 0.00 0.00 0.00 4.17
3969 4749 6.438741 TGATATAATTTTTGCTCCCACCACAA 59.561 34.615 0.00 0.00 0.00 3.33
3970 4750 5.760484 ATAATTTTTGCTCCCACCACAAT 57.240 34.783 0.00 0.00 0.00 2.71
3971 4751 3.683365 ATTTTTGCTCCCACCACAATC 57.317 42.857 0.00 0.00 0.00 2.67
3972 4752 0.958091 TTTTGCTCCCACCACAATCG 59.042 50.000 0.00 0.00 0.00 3.34
3973 4753 0.893270 TTTGCTCCCACCACAATCGG 60.893 55.000 0.00 0.00 0.00 4.18
3974 4754 2.063015 TTGCTCCCACCACAATCGGT 62.063 55.000 0.00 0.00 41.07 4.69
3975 4755 1.745489 GCTCCCACCACAATCGGTC 60.745 63.158 0.00 0.00 37.07 4.79
3976 4756 1.983224 CTCCCACCACAATCGGTCT 59.017 57.895 0.00 0.00 37.07 3.85
3977 4757 0.324943 CTCCCACCACAATCGGTCTT 59.675 55.000 0.00 0.00 37.07 3.01
3978 4758 0.036164 TCCCACCACAATCGGTCTTG 59.964 55.000 0.00 0.00 37.07 3.02
3979 4759 0.036164 CCCACCACAATCGGTCTTGA 59.964 55.000 1.23 0.00 37.07 3.02
3980 4760 1.340017 CCCACCACAATCGGTCTTGAT 60.340 52.381 1.23 0.00 37.07 2.57
3981 4761 2.093181 CCCACCACAATCGGTCTTGATA 60.093 50.000 1.23 0.00 37.07 2.15
3982 4762 3.198068 CCACCACAATCGGTCTTGATAG 58.802 50.000 1.23 0.00 37.07 2.08
3983 4763 3.369471 CCACCACAATCGGTCTTGATAGT 60.369 47.826 1.23 0.00 37.07 2.12
3984 4764 4.253685 CACCACAATCGGTCTTGATAGTT 58.746 43.478 1.23 0.00 37.07 2.24
3985 4765 5.416083 CACCACAATCGGTCTTGATAGTTA 58.584 41.667 1.23 0.00 37.07 2.24
3986 4766 5.872617 CACCACAATCGGTCTTGATAGTTAA 59.127 40.000 1.23 0.00 37.07 2.01
3987 4767 6.370442 CACCACAATCGGTCTTGATAGTTAAA 59.630 38.462 1.23 0.00 37.07 1.52
3988 4768 7.065803 CACCACAATCGGTCTTGATAGTTAAAT 59.934 37.037 1.23 0.00 37.07 1.40
3989 4769 7.610305 ACCACAATCGGTCTTGATAGTTAAATT 59.390 33.333 1.23 0.00 32.11 1.82
3990 4770 8.458843 CCACAATCGGTCTTGATAGTTAAATTT 58.541 33.333 0.00 0.00 0.00 1.82
3995 4775 9.901172 ATCGGTCTTGATAGTTAAATTTAAGGT 57.099 29.630 10.92 4.69 0.00 3.50
3996 4776 9.374838 TCGGTCTTGATAGTTAAATTTAAGGTC 57.625 33.333 10.92 9.69 0.00 3.85
3997 4777 9.158233 CGGTCTTGATAGTTAAATTTAAGGTCA 57.842 33.333 10.92 11.81 0.00 4.02
4011 4791 9.535878 AAATTTAAGGTCAAAATTAAAGCACGA 57.464 25.926 0.00 0.00 35.91 4.35
4012 4792 8.742554 ATTTAAGGTCAAAATTAAAGCACGAG 57.257 30.769 0.00 0.00 35.11 4.18
4013 4793 4.766404 AGGTCAAAATTAAAGCACGAGG 57.234 40.909 0.00 0.00 0.00 4.63
4014 4794 4.394729 AGGTCAAAATTAAAGCACGAGGA 58.605 39.130 0.00 0.00 0.00 3.71
4015 4795 5.010282 AGGTCAAAATTAAAGCACGAGGAT 58.990 37.500 0.00 0.00 0.00 3.24
4016 4796 6.177610 AGGTCAAAATTAAAGCACGAGGATA 58.822 36.000 0.00 0.00 0.00 2.59
4017 4797 6.657541 AGGTCAAAATTAAAGCACGAGGATAA 59.342 34.615 0.00 0.00 0.00 1.75
4018 4798 7.175990 AGGTCAAAATTAAAGCACGAGGATAAA 59.824 33.333 0.00 0.00 0.00 1.40
4019 4799 7.484959 GGTCAAAATTAAAGCACGAGGATAAAG 59.515 37.037 0.00 0.00 0.00 1.85
4020 4800 7.484959 GTCAAAATTAAAGCACGAGGATAAAGG 59.515 37.037 0.00 0.00 0.00 3.11
4021 4801 7.392113 TCAAAATTAAAGCACGAGGATAAAGGA 59.608 33.333 0.00 0.00 0.00 3.36
4022 4802 7.696992 AAATTAAAGCACGAGGATAAAGGAA 57.303 32.000 0.00 0.00 0.00 3.36
4023 4803 6.927294 ATTAAAGCACGAGGATAAAGGAAG 57.073 37.500 0.00 0.00 0.00 3.46
4024 4804 2.317530 AGCACGAGGATAAAGGAAGC 57.682 50.000 0.00 0.00 0.00 3.86
4025 4805 1.555075 AGCACGAGGATAAAGGAAGCA 59.445 47.619 0.00 0.00 0.00 3.91
4026 4806 1.666189 GCACGAGGATAAAGGAAGCAC 59.334 52.381 0.00 0.00 0.00 4.40
4027 4807 2.678190 GCACGAGGATAAAGGAAGCACT 60.678 50.000 0.00 0.00 0.00 4.40
4028 4808 3.430374 GCACGAGGATAAAGGAAGCACTA 60.430 47.826 0.00 0.00 0.00 2.74
4029 4809 4.113354 CACGAGGATAAAGGAAGCACTAC 58.887 47.826 0.00 0.00 0.00 2.73
4030 4810 3.767673 ACGAGGATAAAGGAAGCACTACA 59.232 43.478 0.00 0.00 0.00 2.74
4031 4811 4.406003 ACGAGGATAAAGGAAGCACTACAT 59.594 41.667 0.00 0.00 0.00 2.29
4032 4812 4.985409 CGAGGATAAAGGAAGCACTACATC 59.015 45.833 0.00 0.00 0.00 3.06
4033 4813 4.950050 AGGATAAAGGAAGCACTACATCG 58.050 43.478 0.00 0.00 0.00 3.84
4034 4814 4.406003 AGGATAAAGGAAGCACTACATCGT 59.594 41.667 0.00 0.00 0.00 3.73
4035 4815 4.508124 GGATAAAGGAAGCACTACATCGTG 59.492 45.833 0.00 0.00 37.94 4.35
4036 4816 2.386661 AAGGAAGCACTACATCGTGG 57.613 50.000 0.00 0.00 35.47 4.94
4037 4817 1.557099 AGGAAGCACTACATCGTGGA 58.443 50.000 0.00 0.00 35.47 4.02
4038 4818 1.899814 AGGAAGCACTACATCGTGGAA 59.100 47.619 0.00 0.00 35.47 3.53
4039 4819 2.501723 AGGAAGCACTACATCGTGGAAT 59.498 45.455 0.00 0.00 35.47 3.01
4040 4820 2.609459 GGAAGCACTACATCGTGGAATG 59.391 50.000 0.00 0.00 35.47 2.67
4041 4821 2.315925 AGCACTACATCGTGGAATGG 57.684 50.000 0.00 0.00 35.47 3.16
4042 4822 1.831106 AGCACTACATCGTGGAATGGA 59.169 47.619 0.00 0.00 35.47 3.41
4043 4823 2.159043 AGCACTACATCGTGGAATGGAG 60.159 50.000 0.00 0.00 42.42 3.86
4044 4824 2.826428 CACTACATCGTGGAATGGAGG 58.174 52.381 1.48 0.00 41.23 4.30
4045 4825 1.762957 ACTACATCGTGGAATGGAGGG 59.237 52.381 1.48 0.00 41.23 4.30
4046 4826 2.039418 CTACATCGTGGAATGGAGGGA 58.961 52.381 0.00 0.00 34.45 4.20
4047 4827 0.833287 ACATCGTGGAATGGAGGGAG 59.167 55.000 0.00 0.00 0.00 4.30
4048 4828 0.833287 CATCGTGGAATGGAGGGAGT 59.167 55.000 0.00 0.00 0.00 3.85
4049 4829 2.039418 CATCGTGGAATGGAGGGAGTA 58.961 52.381 0.00 0.00 0.00 2.59
4050 4830 2.471815 TCGTGGAATGGAGGGAGTAT 57.528 50.000 0.00 0.00 0.00 2.12
4051 4831 3.605726 TCGTGGAATGGAGGGAGTATA 57.394 47.619 0.00 0.00 0.00 1.47
4052 4832 3.497332 TCGTGGAATGGAGGGAGTATAG 58.503 50.000 0.00 0.00 0.00 1.31
4087 4900 1.344763 CGGTCCCTCTGTCTTTTGTCT 59.655 52.381 0.00 0.00 0.00 3.41
4115 4928 0.179004 TGCGTCCCACCACTTCAATT 60.179 50.000 0.00 0.00 0.00 2.32
4135 5416 8.125978 TCAATTTTGCTCAAAATGATACTCCT 57.874 30.769 18.01 1.45 46.76 3.69
4139 5420 8.862325 TTTTGCTCAAAATGATACTCCTTCTA 57.138 30.769 3.86 0.00 35.57 2.10
4178 5459 9.420551 AGACGTTTTAGGTCACTATTAGAAAAG 57.579 33.333 0.00 0.00 35.60 2.27
4179 5460 9.415544 GACGTTTTAGGTCACTATTAGAAAAGA 57.584 33.333 0.00 0.00 33.54 2.52
4187 5640 6.426937 GGTCACTATTAGAAAAGAGTTGTGCA 59.573 38.462 0.00 0.00 34.97 4.57
4190 5643 8.721478 TCACTATTAGAAAAGAGTTGTGCATTC 58.279 33.333 0.00 0.00 34.97 2.67
4192 5645 9.944376 ACTATTAGAAAAGAGTTGTGCATTCTA 57.056 29.630 0.00 0.00 33.37 2.10
4200 5653 6.006759 AGAGTTGTGCATTCTAGCTTTTTC 57.993 37.500 0.00 0.00 34.99 2.29
4207 5660 6.183360 TGTGCATTCTAGCTTTTTCCTTTTGA 60.183 34.615 0.00 0.00 34.99 2.69
4234 5692 7.324178 ACTCTACAATTGTTCTAAGCTGGTAG 58.676 38.462 17.78 3.35 0.00 3.18
4246 5704 2.327200 GCTGGTAGCGGGAGTTAATT 57.673 50.000 2.36 0.00 0.00 1.40
4247 5705 1.940613 GCTGGTAGCGGGAGTTAATTG 59.059 52.381 2.36 0.00 0.00 2.32
4248 5706 2.419574 GCTGGTAGCGGGAGTTAATTGA 60.420 50.000 2.36 0.00 0.00 2.57
4249 5707 3.458189 CTGGTAGCGGGAGTTAATTGAG 58.542 50.000 0.00 0.00 0.00 3.02
4250 5708 2.210961 GGTAGCGGGAGTTAATTGAGC 58.789 52.381 0.00 0.00 0.00 4.26
4251 5709 1.859080 GTAGCGGGAGTTAATTGAGCG 59.141 52.381 0.00 0.00 0.00 5.03
4252 5710 0.249398 AGCGGGAGTTAATTGAGCGT 59.751 50.000 0.00 0.00 0.00 5.07
4253 5711 1.084289 GCGGGAGTTAATTGAGCGTT 58.916 50.000 0.00 0.00 0.00 4.84
4254 5712 1.467342 GCGGGAGTTAATTGAGCGTTT 59.533 47.619 0.00 0.00 0.00 3.60
4255 5713 2.727916 GCGGGAGTTAATTGAGCGTTTG 60.728 50.000 0.00 0.00 0.00 2.93
4256 5714 2.159572 CGGGAGTTAATTGAGCGTTTGG 60.160 50.000 0.00 0.00 0.00 3.28
4257 5715 3.078837 GGGAGTTAATTGAGCGTTTGGA 58.921 45.455 0.00 0.00 0.00 3.53
4278 5736 4.194720 GTGGGACTCGATCGCGCT 62.195 66.667 11.09 0.00 45.05 5.92
4301 5759 1.471287 GGAAGGTCAAAACGCATACCC 59.529 52.381 0.00 0.00 32.10 3.69
4327 5785 2.678190 GCTGATTAGGAACGGACTTGCT 60.678 50.000 0.00 0.00 34.37 3.91
4367 5825 0.449388 GAGAAACATCAAGGCAGGCG 59.551 55.000 0.00 0.00 0.00 5.52
4387 5845 2.237066 GGTTTGCGTTGCTTGTGGC 61.237 57.895 0.00 0.00 42.22 5.01
4474 5932 1.003118 CACTCGGAATTGGGAGTTCCA 59.997 52.381 5.47 0.00 44.29 3.53
4509 5967 3.764434 CTGGTTACAGTTAGCTCTCAGGA 59.236 47.826 0.00 0.00 39.92 3.86
4652 6110 5.659503 AGATTGAGGAGGCTGGAGATATAA 58.340 41.667 0.00 0.00 0.00 0.98
4727 6185 3.723245 GGAGGCCGGAACCTACTT 58.277 61.111 5.05 0.00 41.32 2.24
4823 6281 0.250770 AAAAGGAGGAGCCGGTGTTC 60.251 55.000 1.90 0.00 43.43 3.18
4824 6282 1.415672 AAAGGAGGAGCCGGTGTTCA 61.416 55.000 1.90 0.00 43.43 3.18
4825 6283 1.201429 AAGGAGGAGCCGGTGTTCAT 61.201 55.000 1.90 0.00 43.43 2.57
4826 6284 1.201429 AGGAGGAGCCGGTGTTCATT 61.201 55.000 1.90 0.00 43.43 2.57
4827 6285 1.026718 GGAGGAGCCGGTGTTCATTG 61.027 60.000 1.90 0.00 0.00 2.82
4857 6315 0.392595 GGCCTTTAGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
5012 6611 6.910259 ACCTCTAATCTTTAATCACCCCTT 57.090 37.500 0.00 0.00 0.00 3.95
5236 6913 8.437575 CCTATTAACCCTCAGGAATTTAGCTTA 58.562 37.037 0.00 0.00 36.73 3.09
5890 7720 4.609301 ACTAATGCCTCAAAGCCCATTAA 58.391 39.130 0.00 0.00 31.88 1.40
5894 7724 2.024080 TGCCTCAAAGCCCATTAATCCT 60.024 45.455 0.00 0.00 0.00 3.24
5986 7833 0.107654 GCATCGCACCCTTTAGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
6382 8229 7.123847 GGACCAGTAGTAGAAGAGGTGAAAATA 59.876 40.741 0.00 0.00 0.00 1.40
6464 8311 1.025812 ACACGCGCTAGCTAGAGAAT 58.974 50.000 26.41 11.31 42.32 2.40
6527 8374 3.303593 CGCCTGATTGTATCTTGCACATC 60.304 47.826 0.00 0.00 0.00 3.06
6612 8459 4.622701 AAATTGAGCGTTTGGATCTAGC 57.377 40.909 0.00 0.00 30.59 3.42
6658 8505 0.321653 CTCCTTTGGAACGGGGACAG 60.322 60.000 0.00 0.00 0.00 3.51
6671 8518 0.179097 GGGACAGGCGATGAGAGAAC 60.179 60.000 0.00 0.00 0.00 3.01
6672 8519 0.526524 GGACAGGCGATGAGAGAACG 60.527 60.000 0.00 0.00 0.00 3.95
6673 8520 0.171455 GACAGGCGATGAGAGAACGT 59.829 55.000 0.00 0.00 0.00 3.99
6674 8521 1.400846 GACAGGCGATGAGAGAACGTA 59.599 52.381 0.00 0.00 0.00 3.57
6700 8549 2.045926 CCCACTGGCACTGGTAGC 60.046 66.667 11.53 0.00 0.00 3.58
6702 8551 2.656646 CACTGGCACTGGTAGCGA 59.343 61.111 0.00 0.00 0.00 4.93
6738 8587 1.041437 CCAAAACCCGTGGCCTTTTA 58.959 50.000 3.32 0.00 0.00 1.52
6788 8637 2.673368 GAGTTCTTATTCCAGTGTGCGG 59.327 50.000 0.00 0.00 0.00 5.69
6796 8645 1.079819 CCAGTGTGCGGTCTGGTAG 60.080 63.158 11.19 0.00 44.19 3.18
6797 8646 1.532604 CCAGTGTGCGGTCTGGTAGA 61.533 60.000 11.19 0.00 44.19 2.59
6798 8647 0.532573 CAGTGTGCGGTCTGGTAGAT 59.467 55.000 0.00 0.00 0.00 1.98
6799 8648 0.818296 AGTGTGCGGTCTGGTAGATC 59.182 55.000 0.00 0.00 0.00 2.75
6800 8649 0.818296 GTGTGCGGTCTGGTAGATCT 59.182 55.000 0.00 0.00 0.00 2.75
6818 8688 4.404073 AGATCTAGACTCGAAACCAATGCT 59.596 41.667 0.00 0.00 0.00 3.79
6828 8698 2.138596 AACCAATGCTCAAAAGTGCG 57.861 45.000 0.00 0.00 0.00 5.34
6830 8700 1.408702 ACCAATGCTCAAAAGTGCGTT 59.591 42.857 0.00 0.00 38.75 4.84
6849 8724 2.905935 TACTCCCCGCTTCTCTCCGG 62.906 65.000 0.00 0.00 43.97 5.14
6879 8754 0.238289 AGCGATCGTTGCTGGTTTTG 59.762 50.000 17.81 0.00 42.14 2.44
6880 8755 1.337110 GCGATCGTTGCTGGTTTTGC 61.337 55.000 17.81 0.00 0.00 3.68
6883 8758 1.452145 ATCGTTGCTGGTTTTGCGGT 61.452 50.000 0.00 0.00 0.00 5.68
6886 8761 3.438017 TTGCTGGTTTTGCGGTGGC 62.438 57.895 0.00 0.00 40.52 5.01
6914 8953 9.016623 TCTTATATCATAACGTGTGTTTCTTCG 57.983 33.333 0.00 0.00 39.54 3.79
7076 9115 3.305471 GCCGGTCTCACTTGATACTATCC 60.305 52.174 1.90 0.00 0.00 2.59
7077 9116 3.256136 CCGGTCTCACTTGATACTATCCC 59.744 52.174 0.00 0.00 0.00 3.85
7196 9240 2.338500 GTGAAAGTTGACGCTAGGGAG 58.662 52.381 14.59 0.00 0.00 4.30
7261 9321 3.567219 GGGGATGGATGGGAATATTGCAT 60.567 47.826 9.34 0.95 0.00 3.96
7356 9418 3.384467 CAGCCAAAGAAGAAAGGGAAACA 59.616 43.478 0.00 0.00 0.00 2.83
7370 9432 2.414840 GAAACAATTGGGCGCGGTGT 62.415 55.000 8.83 0.00 0.00 4.16
7464 9526 0.179468 GGGGCTACCAAACGCTATCA 59.821 55.000 0.00 0.00 39.85 2.15
7470 9532 4.022242 GGCTACCAAACGCTATCATCTCTA 60.022 45.833 0.00 0.00 0.00 2.43
7471 9533 5.336849 GGCTACCAAACGCTATCATCTCTAT 60.337 44.000 0.00 0.00 0.00 1.98
7484 9546 9.336171 GCTATCATCTCTATTTTCTTCAACCTT 57.664 33.333 0.00 0.00 0.00 3.50
7518 9580 0.806868 CCACAACGCATGCATCTCTT 59.193 50.000 19.57 0.00 0.00 2.85
7639 9736 0.551624 CCCCACCCCCTTCTTCCTTA 60.552 60.000 0.00 0.00 0.00 2.69
7644 9741 1.083912 ACCCCCTTCTTCCTTATCCCA 59.916 52.381 0.00 0.00 0.00 4.37
7664 9761 2.634940 CACACTTCCTTTCTCCTCCTCA 59.365 50.000 0.00 0.00 0.00 3.86
7665 9762 3.071602 CACACTTCCTTTCTCCTCCTCAA 59.928 47.826 0.00 0.00 0.00 3.02
7666 9763 3.716872 ACACTTCCTTTCTCCTCCTCAAA 59.283 43.478 0.00 0.00 0.00 2.69
7667 9764 4.166144 ACACTTCCTTTCTCCTCCTCAAAA 59.834 41.667 0.00 0.00 0.00 2.44
7668 9765 4.517075 CACTTCCTTTCTCCTCCTCAAAAC 59.483 45.833 0.00 0.00 0.00 2.43
7669 9766 3.402628 TCCTTTCTCCTCCTCAAAACG 57.597 47.619 0.00 0.00 0.00 3.60
7670 9767 1.807142 CCTTTCTCCTCCTCAAAACGC 59.193 52.381 0.00 0.00 0.00 4.84
7671 9768 1.807142 CTTTCTCCTCCTCAAAACGCC 59.193 52.381 0.00 0.00 0.00 5.68
7672 9769 0.320421 TTCTCCTCCTCAAAACGCCG 60.320 55.000 0.00 0.00 0.00 6.46
7736 9838 2.048597 CTGCAACCGCGGTACTGA 60.049 61.111 34.44 14.95 42.97 3.41
7797 9899 4.320494 GGACACAAAAAGCTACATCCAGTG 60.320 45.833 0.00 0.00 0.00 3.66
7852 9954 5.358725 ACAGGAAAAGTTACAACCGTTTGAT 59.641 36.000 0.00 0.00 36.48 2.57
7945 10078 2.029020 CGTCTCTGTGATTTCACCCAGA 60.029 50.000 8.16 6.45 45.88 3.86
7947 10080 2.972021 TCTCTGTGATTTCACCCAGACA 59.028 45.455 8.16 0.00 45.88 3.41
7994 10127 7.596494 TCAATCATTTACAGAAAAGCTTCCAG 58.404 34.615 0.00 0.00 31.28 3.86
7996 10129 4.826733 TCATTTACAGAAAAGCTTCCAGCA 59.173 37.500 0.00 0.00 45.56 4.41
8039 10172 4.761739 CCATTGAGAGAAAAGCTACAACCA 59.238 41.667 0.00 0.00 0.00 3.67
8107 10241 6.769512 ACATATTTTACTACATCCGGCATCT 58.230 36.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.725364 AGAATCCCATGTTCAGTTTACTCAT 58.275 36.000 0.00 0.00 0.00 2.90
21 22 9.841295 AATGGAAATTCATAAAAGAATCCCATG 57.159 29.630 16.87 0.00 43.18 3.66
112 115 7.603784 GCACAATCATCTTGGGTTAGAATTTTT 59.396 33.333 0.00 0.00 0.00 1.94
113 116 7.099120 GCACAATCATCTTGGGTTAGAATTTT 58.901 34.615 0.00 0.00 0.00 1.82
114 117 6.625740 CGCACAATCATCTTGGGTTAGAATTT 60.626 38.462 0.00 0.00 0.00 1.82
115 118 5.163622 CGCACAATCATCTTGGGTTAGAATT 60.164 40.000 0.00 0.00 0.00 2.17
116 119 4.336433 CGCACAATCATCTTGGGTTAGAAT 59.664 41.667 0.00 0.00 0.00 2.40
175 178 4.527509 TTTATGCCATTCTTTTTGCGGA 57.472 36.364 0.00 0.00 0.00 5.54
204 207 4.008074 ACACTTGTGACACTTATCAGGG 57.992 45.455 7.20 0.00 0.00 4.45
230 233 4.663636 AAGTTAGAACGGAATTGCTTCG 57.336 40.909 0.00 0.00 31.75 3.79
240 243 6.347725 CCTGTCATCAAAGAAAGTTAGAACGG 60.348 42.308 0.00 0.00 0.00 4.44
243 246 8.519799 AAACCTGTCATCAAAGAAAGTTAGAA 57.480 30.769 0.00 0.00 0.00 2.10
244 247 9.273016 CTAAACCTGTCATCAAAGAAAGTTAGA 57.727 33.333 0.00 0.00 0.00 2.10
247 250 7.881775 ACTAAACCTGTCATCAAAGAAAGTT 57.118 32.000 0.00 0.00 0.00 2.66
261 264 6.440647 TGTCATCCTCAGATAACTAAACCTGT 59.559 38.462 0.00 0.00 0.00 4.00
263 266 7.181125 AGTTGTCATCCTCAGATAACTAAACCT 59.819 37.037 3.94 0.00 42.94 3.50
274 277 8.134202 TCATAACTAAAGTTGTCATCCTCAGA 57.866 34.615 5.62 0.00 38.90 3.27
275 278 8.777865 TTCATAACTAAAGTTGTCATCCTCAG 57.222 34.615 5.62 0.00 38.90 3.35
277 280 7.334421 TGCTTCATAACTAAAGTTGTCATCCTC 59.666 37.037 5.62 0.00 38.90 3.71
285 288 9.630098 AATTGTCATGCTTCATAACTAAAGTTG 57.370 29.630 5.62 0.00 38.90 3.16
296 299 9.932207 TTCAAATAGAAAATTGTCATGCTTCAT 57.068 25.926 0.00 0.00 32.05 2.57
297 300 9.932207 ATTCAAATAGAAAATTGTCATGCTTCA 57.068 25.926 0.00 0.00 40.22 3.02
299 302 9.932207 TCATTCAAATAGAAAATTGTCATGCTT 57.068 25.926 0.00 0.00 40.22 3.91
378 382 0.391263 CACAAGGTAACCCCGCTCTC 60.391 60.000 0.00 0.00 38.74 3.20
380 384 0.672711 GACACAAGGTAACCCCGCTC 60.673 60.000 0.00 0.00 38.74 5.03
384 388 2.579410 ATGTGACACAAGGTAACCCC 57.421 50.000 13.23 0.00 28.63 4.95
403 408 6.665680 ACATTTACCCAAATAAGTGCCACATA 59.334 34.615 0.00 0.00 32.96 2.29
404 409 5.483583 ACATTTACCCAAATAAGTGCCACAT 59.516 36.000 0.00 0.00 32.96 3.21
409 414 5.061684 GCGAAACATTTACCCAAATAAGTGC 59.938 40.000 0.00 0.00 32.96 4.40
410 415 5.575218 GGCGAAACATTTACCCAAATAAGTG 59.425 40.000 0.00 0.00 32.96 3.16
414 419 5.419155 TCATGGCGAAACATTTACCCAAATA 59.581 36.000 0.00 0.00 32.96 1.40
420 428 3.548014 CGGATCATGGCGAAACATTTACC 60.548 47.826 0.00 0.00 0.00 2.85
530 562 6.271488 TCTTCCTTGCTTGTTAAATGATGG 57.729 37.500 0.00 0.00 0.00 3.51
589 625 1.000612 GAAGAGGAGACGGGAGGGT 59.999 63.158 0.00 0.00 0.00 4.34
610 646 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
613 649 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
614 650 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
615 651 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
616 652 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
617 653 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
618 654 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
619 655 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
620 656 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
621 657 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
622 658 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
623 659 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
624 660 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
625 661 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
626 662 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
627 663 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
628 664 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
629 665 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
630 666 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
631 667 2.408565 GGGGAGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
649 685 3.253838 TGTGAACGGGGAAGGGGG 61.254 66.667 0.00 0.00 0.00 5.40
972 1008 1.216990 CTTGGCTGGATTAGAGGGGT 58.783 55.000 0.00 0.00 0.00 4.95
1029 1070 0.182299 GGAAGGGGAGGAGCAAGATG 59.818 60.000 0.00 0.00 0.00 2.90
1072 1113 4.432741 GTTGAGCAGGGGGAGGGC 62.433 72.222 0.00 0.00 0.00 5.19
1164 1205 0.318955 CTCAAAAGTTTGCCCTGCCG 60.319 55.000 0.00 0.00 38.05 5.69
1170 1211 0.104671 TGCAGCCTCAAAAGTTTGCC 59.895 50.000 0.00 0.00 38.05 4.52
1358 1399 1.913762 CCGGTCCTTCCACCAGTCT 60.914 63.158 0.00 0.00 36.01 3.24
2159 2201 1.790387 CGGCAAGAGAAAAGAGGCG 59.210 57.895 0.00 0.00 41.63 5.52
2161 2203 0.519077 GCACGGCAAGAGAAAAGAGG 59.481 55.000 0.00 0.00 0.00 3.69
2162 2204 0.519077 GGCACGGCAAGAGAAAAGAG 59.481 55.000 0.00 0.00 0.00 2.85
2163 2205 2.629002 GGCACGGCAAGAGAAAAGA 58.371 52.632 0.00 0.00 0.00 2.52
2183 2225 1.879380 CCATGAGCAAACAAACCGAGA 59.121 47.619 0.00 0.00 0.00 4.04
2252 2303 1.156736 CAAAGATCCAAACGAGGCGT 58.843 50.000 0.00 0.00 43.97 5.68
2294 2354 4.341502 CTTTGGCAACCACCGCGG 62.342 66.667 26.86 26.86 42.50 6.46
2295 2355 2.731587 CTTCTTTGGCAACCACCGCG 62.732 60.000 0.00 0.00 30.78 6.46
2339 2399 2.510613 GGGAAGAAAAACGGGACATGA 58.489 47.619 0.00 0.00 0.00 3.07
2348 2408 3.557185 AGAACACGTACGGGAAGAAAAAC 59.443 43.478 27.01 5.81 0.00 2.43
2397 2461 8.543774 CGCAGAAATTAACATGGTTTTTAACAA 58.456 29.630 0.00 0.00 0.00 2.83
2407 2471 7.673776 GCAAAATAACCGCAGAAATTAACATGG 60.674 37.037 0.00 0.00 0.00 3.66
2440 2507 5.488341 ACCATCACTACAAACCTCATGTAC 58.512 41.667 0.00 0.00 32.27 2.90
2509 2589 1.827969 ACGAAAGAGAGAGATGGGGTG 59.172 52.381 0.00 0.00 0.00 4.61
2527 2609 7.783090 TTCTCCTACTACTACTATCAACACG 57.217 40.000 0.00 0.00 0.00 4.49
2583 2686 1.299648 CTGGCTGGACCCAAATCGA 59.700 57.895 0.00 0.00 37.83 3.59
2693 2820 2.035832 CACCTGTAGCCCAACCAAAAAG 59.964 50.000 0.00 0.00 0.00 2.27
2696 2823 0.847373 TCACCTGTAGCCCAACCAAA 59.153 50.000 0.00 0.00 0.00 3.28
2706 2834 2.152699 CGCGCTTCGTCACCTGTAG 61.153 63.158 5.56 0.00 0.00 2.74
2953 3081 0.895100 ACCCACGTAGTAGACCGCAA 60.895 55.000 0.00 0.00 41.61 4.85
2954 3082 1.303561 ACCCACGTAGTAGACCGCA 60.304 57.895 0.00 0.00 41.61 5.69
2976 3104 0.462759 GAGACATTTCAGCCCCTCGG 60.463 60.000 0.00 0.00 0.00 4.63
2978 3106 0.250513 ACGAGACATTTCAGCCCCTC 59.749 55.000 0.00 0.00 0.00 4.30
2979 3107 1.207329 GTACGAGACATTTCAGCCCCT 59.793 52.381 0.00 0.00 0.00 4.79
2991 3119 4.026804 CAGTTTTATCGCATGGTACGAGAC 60.027 45.833 0.00 0.00 43.74 3.36
3107 3239 8.757789 GCAAATGCGTACTACTGTATGTATAAA 58.242 33.333 0.00 0.00 39.12 1.40
3108 3240 7.383029 GGCAAATGCGTACTACTGTATGTATAA 59.617 37.037 0.00 0.00 39.12 0.98
3109 3241 6.864685 GGCAAATGCGTACTACTGTATGTATA 59.135 38.462 0.00 0.00 39.12 1.47
3111 3243 5.045215 GGCAAATGCGTACTACTGTATGTA 58.955 41.667 0.00 0.00 43.26 2.29
3112 3244 3.869246 GGCAAATGCGTACTACTGTATGT 59.131 43.478 0.00 0.00 43.26 2.29
3113 3245 4.119862 AGGCAAATGCGTACTACTGTATG 58.880 43.478 0.00 0.00 43.26 2.39
3114 3246 4.402056 AGGCAAATGCGTACTACTGTAT 57.598 40.909 0.00 0.00 43.26 2.29
3115 3247 3.880047 AGGCAAATGCGTACTACTGTA 57.120 42.857 0.00 0.00 43.26 2.74
3116 3248 2.762535 AGGCAAATGCGTACTACTGT 57.237 45.000 0.00 0.00 43.26 3.55
3117 3249 2.351726 GGAAGGCAAATGCGTACTACTG 59.648 50.000 0.52 0.00 43.26 2.74
3118 3250 2.236395 AGGAAGGCAAATGCGTACTACT 59.764 45.455 0.52 0.00 43.26 2.57
3119 3251 2.608090 GAGGAAGGCAAATGCGTACTAC 59.392 50.000 0.52 0.00 43.26 2.73
3120 3252 2.419574 GGAGGAAGGCAAATGCGTACTA 60.420 50.000 0.52 0.00 43.26 1.82
3212 3350 3.202706 GATTCCAGGCGCGGGAAC 61.203 66.667 27.82 19.31 46.53 3.62
3223 3361 8.383175 AGTAGAGTAGACCAAAATTTGATTCCA 58.617 33.333 7.37 0.00 0.00 3.53
3236 3374 2.420269 CCGAGCTGAGTAGAGTAGACCA 60.420 54.545 0.00 0.00 0.00 4.02
3238 3376 1.600485 GCCGAGCTGAGTAGAGTAGAC 59.400 57.143 0.00 0.00 0.00 2.59
3247 3385 3.311110 TTTCCCGCCGAGCTGAGT 61.311 61.111 0.00 0.00 0.00 3.41
3269 3407 2.423538 ACAAACAGCACAGGACAGAAAC 59.576 45.455 0.00 0.00 0.00 2.78
3274 3412 1.748493 GGAAACAAACAGCACAGGACA 59.252 47.619 0.00 0.00 0.00 4.02
3282 3420 0.961753 CAGGAGGGGAAACAAACAGC 59.038 55.000 0.00 0.00 0.00 4.40
3283 3421 0.961753 GCAGGAGGGGAAACAAACAG 59.038 55.000 0.00 0.00 0.00 3.16
3288 3426 2.429930 CGTGCAGGAGGGGAAACA 59.570 61.111 0.00 0.00 0.00 2.83
3290 3428 3.551496 CTGCGTGCAGGAGGGGAAA 62.551 63.158 14.00 0.00 40.17 3.13
3293 3431 2.826777 ATTTCTGCGTGCAGGAGGGG 62.827 60.000 20.78 0.00 43.75 4.79
3297 3435 1.825090 AATGATTTCTGCGTGCAGGA 58.175 45.000 20.78 10.60 43.75 3.86
3319 3457 4.778143 ATTCGCACGGCCAGGGAC 62.778 66.667 10.93 0.00 0.00 4.46
3332 3470 2.809174 TCCTCGCGTGTGCATTCG 60.809 61.111 5.77 8.71 42.97 3.34
3456 4174 6.042322 GGAGGCCCGGGTTAATTATTAATTTT 59.958 38.462 24.63 0.00 32.38 1.82
3481 4203 1.135257 CAGAGTGAGTACCTTGAGGCG 60.135 57.143 0.00 0.00 39.32 5.52
3491 4213 5.120208 GCGATGCTTTTAAACAGAGTGAGTA 59.880 40.000 0.00 0.00 0.00 2.59
3495 4217 3.155998 CGCGATGCTTTTAAACAGAGTG 58.844 45.455 0.00 0.00 0.00 3.51
3498 4220 3.181538 CGTACGCGATGCTTTTAAACAGA 60.182 43.478 15.93 0.00 41.33 3.41
3500 4222 2.722403 GCGTACGCGATGCTTTTAAACA 60.722 45.455 26.17 0.00 41.33 2.83
3505 4227 2.782615 GGCGTACGCGATGCTTTT 59.217 55.556 31.78 0.00 43.06 2.27
3506 4228 3.550992 CGGCGTACGCGATGCTTT 61.551 61.111 31.78 0.00 43.06 3.51
3526 4248 9.709495 CTGTACTACCTACTCCAGTATAGTTAG 57.291 40.741 5.68 3.18 32.06 2.34
3530 4252 7.965718 ACTCTGTACTACCTACTCCAGTATAG 58.034 42.308 0.00 0.00 36.11 1.31
3531 4253 7.927683 ACTCTGTACTACCTACTCCAGTATA 57.072 40.000 0.00 0.00 0.00 1.47
3533 4255 6.633325 AACTCTGTACTACCTACTCCAGTA 57.367 41.667 0.00 0.00 0.00 2.74
3534 4256 5.517620 AACTCTGTACTACCTACTCCAGT 57.482 43.478 0.00 0.00 0.00 4.00
3535 4257 7.611079 AGTTTAACTCTGTACTACCTACTCCAG 59.389 40.741 0.00 0.00 0.00 3.86
3536 4258 7.392673 CAGTTTAACTCTGTACTACCTACTCCA 59.607 40.741 0.00 0.00 0.00 3.86
3537 4259 7.628153 GCAGTTTAACTCTGTACTACCTACTCC 60.628 44.444 0.00 0.00 35.60 3.85
3540 4262 6.026513 CGCAGTTTAACTCTGTACTACCTAC 58.973 44.000 0.00 0.00 35.60 3.18
3541 4263 5.939883 TCGCAGTTTAACTCTGTACTACCTA 59.060 40.000 0.00 0.00 35.60 3.08
3542 4264 4.763793 TCGCAGTTTAACTCTGTACTACCT 59.236 41.667 0.00 0.00 35.60 3.08
3543 4265 5.051891 TCGCAGTTTAACTCTGTACTACC 57.948 43.478 0.00 0.00 35.60 3.18
3573 4307 4.160439 CCTGTAGTGGTCTGCATCTTCTAA 59.840 45.833 0.00 0.00 35.88 2.10
3606 4356 2.905075 CGAGTGCCATGGATTTGTCTA 58.095 47.619 18.40 0.00 0.00 2.59
3610 4360 0.742505 ATGCGAGTGCCATGGATTTG 59.257 50.000 18.40 4.68 41.78 2.32
3612 4362 1.105167 CCATGCGAGTGCCATGGATT 61.105 55.000 18.40 0.00 45.13 3.01
3614 4364 2.124612 CCATGCGAGTGCCATGGA 60.125 61.111 18.40 0.00 45.13 3.41
3634 4412 1.985684 GGCCGAATTTTTCTTGCTTCG 59.014 47.619 0.00 0.00 39.99 3.79
3635 4413 1.985684 CGGCCGAATTTTTCTTGCTTC 59.014 47.619 24.07 0.00 0.00 3.86
3640 4418 0.671251 TGCACGGCCGAATTTTTCTT 59.329 45.000 35.90 1.64 0.00 2.52
3741 4519 1.202245 TGGTGCAAGAAAAGAACACGC 60.202 47.619 0.00 0.00 32.00 5.34
3756 4534 2.159296 ACGTTCCTTTTTGTCTTGGTGC 60.159 45.455 0.00 0.00 0.00 5.01
3787 4567 0.458543 CGGTAGCACAGTAGCCAGTG 60.459 60.000 0.00 0.00 38.74 3.66
3799 4579 0.106819 GGAGGGAGTACTCGGTAGCA 60.107 60.000 16.56 0.00 38.39 3.49
3800 4580 0.106819 TGGAGGGAGTACTCGGTAGC 60.107 60.000 16.56 2.28 38.39 3.58
3801 4581 2.660670 ATGGAGGGAGTACTCGGTAG 57.339 55.000 16.56 0.00 38.39 3.18
3802 4582 2.512896 AGAATGGAGGGAGTACTCGGTA 59.487 50.000 16.56 2.04 38.39 4.02
3803 4583 1.288335 AGAATGGAGGGAGTACTCGGT 59.712 52.381 16.56 6.06 38.39 4.69
3804 4584 2.074729 AGAATGGAGGGAGTACTCGG 57.925 55.000 16.56 0.00 38.39 4.63
3805 4585 5.593679 TTTTAGAATGGAGGGAGTACTCG 57.406 43.478 16.56 0.00 38.39 4.18
3807 4587 9.900112 ACTATATTTTAGAATGGAGGGAGTACT 57.100 33.333 0.00 0.00 0.00 2.73
3809 4589 8.594550 GCACTATATTTTAGAATGGAGGGAGTA 58.405 37.037 0.00 0.00 0.00 2.59
3810 4590 7.454225 GCACTATATTTTAGAATGGAGGGAGT 58.546 38.462 0.00 0.00 0.00 3.85
3811 4591 6.591834 CGCACTATATTTTAGAATGGAGGGAG 59.408 42.308 0.00 0.00 0.00 4.30
3812 4592 6.464222 CGCACTATATTTTAGAATGGAGGGA 58.536 40.000 0.00 0.00 0.00 4.20
3813 4593 5.122396 GCGCACTATATTTTAGAATGGAGGG 59.878 44.000 0.30 0.00 0.00 4.30
3814 4594 5.122396 GGCGCACTATATTTTAGAATGGAGG 59.878 44.000 10.83 0.00 0.00 4.30
3817 4597 5.617751 GCAGGCGCACTATATTTTAGAATGG 60.618 44.000 10.83 0.00 38.36 3.16
3818 4598 5.385617 GCAGGCGCACTATATTTTAGAATG 58.614 41.667 10.83 0.00 38.36 2.67
3819 4599 4.152402 CGCAGGCGCACTATATTTTAGAAT 59.848 41.667 10.83 0.00 38.40 2.40
3820 4600 3.493129 CGCAGGCGCACTATATTTTAGAA 59.507 43.478 10.83 0.00 38.40 2.10
3821 4601 3.057019 CGCAGGCGCACTATATTTTAGA 58.943 45.455 10.83 0.00 38.40 2.10
3822 4602 3.439932 CGCAGGCGCACTATATTTTAG 57.560 47.619 10.83 0.00 38.40 1.85
3837 4617 4.821589 GACCTCGGGAAGCGCAGG 62.822 72.222 11.47 9.19 0.00 4.85
3838 4618 4.821589 GGACCTCGGGAAGCGCAG 62.822 72.222 11.47 0.00 0.00 5.18
3840 4620 4.388499 TTGGACCTCGGGAAGCGC 62.388 66.667 0.00 0.00 0.00 5.92
3841 4621 2.434359 GTTGGACCTCGGGAAGCG 60.434 66.667 0.00 0.00 0.00 4.68
3842 4622 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
3843 4623 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
3844 4624 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
3845 4625 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
3846 4626 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
3852 4632 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
3853 4633 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
3854 4634 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
3855 4635 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
3856 4636 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
3857 4637 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
3858 4638 8.804688 TTCGTTGGTTAAATTTATGGTCAAAG 57.195 30.769 0.00 4.88 0.00 2.77
3859 4639 9.032420 GTTTCGTTGGTTAAATTTATGGTCAAA 57.968 29.630 0.00 0.00 0.00 2.69
3860 4640 7.652507 GGTTTCGTTGGTTAAATTTATGGTCAA 59.347 33.333 0.00 0.00 0.00 3.18
3861 4641 7.146648 GGTTTCGTTGGTTAAATTTATGGTCA 58.853 34.615 0.00 0.00 0.00 4.02
3862 4642 7.146648 TGGTTTCGTTGGTTAAATTTATGGTC 58.853 34.615 0.00 0.00 0.00 4.02
3863 4643 7.052142 TGGTTTCGTTGGTTAAATTTATGGT 57.948 32.000 0.00 0.00 0.00 3.55
3864 4644 7.654116 AGTTGGTTTCGTTGGTTAAATTTATGG 59.346 33.333 0.00 0.00 0.00 2.74
3865 4645 8.484008 CAGTTGGTTTCGTTGGTTAAATTTATG 58.516 33.333 0.00 0.00 0.00 1.90
3866 4646 7.170151 GCAGTTGGTTTCGTTGGTTAAATTTAT 59.830 33.333 0.00 0.00 0.00 1.40
3867 4647 6.476053 GCAGTTGGTTTCGTTGGTTAAATTTA 59.524 34.615 0.00 0.00 0.00 1.40
3868 4648 5.292345 GCAGTTGGTTTCGTTGGTTAAATTT 59.708 36.000 0.00 0.00 0.00 1.82
3869 4649 4.806775 GCAGTTGGTTTCGTTGGTTAAATT 59.193 37.500 0.00 0.00 0.00 1.82
3870 4650 4.364860 GCAGTTGGTTTCGTTGGTTAAAT 58.635 39.130 0.00 0.00 0.00 1.40
3871 4651 3.731264 CGCAGTTGGTTTCGTTGGTTAAA 60.731 43.478 0.00 0.00 0.00 1.52
3872 4652 2.223294 CGCAGTTGGTTTCGTTGGTTAA 60.223 45.455 0.00 0.00 0.00 2.01
3873 4653 1.331138 CGCAGTTGGTTTCGTTGGTTA 59.669 47.619 0.00 0.00 0.00 2.85
3874 4654 0.099791 CGCAGTTGGTTTCGTTGGTT 59.900 50.000 0.00 0.00 0.00 3.67
3875 4655 1.720694 CCGCAGTTGGTTTCGTTGGT 61.721 55.000 0.00 0.00 0.00 3.67
3876 4656 1.008995 CCGCAGTTGGTTTCGTTGG 60.009 57.895 0.00 0.00 0.00 3.77
3877 4657 1.657181 GCCGCAGTTGGTTTCGTTG 60.657 57.895 0.00 0.00 0.00 4.10
3878 4658 2.719354 GCCGCAGTTGGTTTCGTT 59.281 55.556 0.00 0.00 0.00 3.85
3879 4659 3.645975 CGCCGCAGTTGGTTTCGT 61.646 61.111 0.00 0.00 0.00 3.85
3880 4660 4.383602 CCGCCGCAGTTGGTTTCG 62.384 66.667 0.00 0.00 0.00 3.46
3881 4661 4.038080 CCCGCCGCAGTTGGTTTC 62.038 66.667 0.00 0.00 0.00 2.78
3882 4662 4.572571 TCCCGCCGCAGTTGGTTT 62.573 61.111 0.00 0.00 0.00 3.27
3885 4665 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
3886 4666 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
3887 4667 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
3888 4668 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
3936 4716 9.822185 GGGAGCAAAAATTATATCAGTGAATTT 57.178 29.630 0.00 0.00 34.94 1.82
3937 4717 8.980596 TGGGAGCAAAAATTATATCAGTGAATT 58.019 29.630 0.00 0.00 0.00 2.17
3938 4718 8.416329 GTGGGAGCAAAAATTATATCAGTGAAT 58.584 33.333 0.00 0.00 0.00 2.57
3939 4719 7.147915 GGTGGGAGCAAAAATTATATCAGTGAA 60.148 37.037 0.00 0.00 0.00 3.18
3940 4720 6.321181 GGTGGGAGCAAAAATTATATCAGTGA 59.679 38.462 0.00 0.00 0.00 3.41
3941 4721 6.096705 TGGTGGGAGCAAAAATTATATCAGTG 59.903 38.462 0.00 0.00 0.00 3.66
3942 4722 6.096846 GTGGTGGGAGCAAAAATTATATCAGT 59.903 38.462 0.00 0.00 0.00 3.41
3943 4723 6.096705 TGTGGTGGGAGCAAAAATTATATCAG 59.903 38.462 0.00 0.00 0.00 2.90
3944 4724 5.954752 TGTGGTGGGAGCAAAAATTATATCA 59.045 36.000 0.00 0.00 0.00 2.15
3945 4725 6.463995 TGTGGTGGGAGCAAAAATTATATC 57.536 37.500 0.00 0.00 0.00 1.63
3946 4726 6.865834 TTGTGGTGGGAGCAAAAATTATAT 57.134 33.333 0.00 0.00 0.00 0.86
3947 4727 6.405286 CGATTGTGGTGGGAGCAAAAATTATA 60.405 38.462 0.00 0.00 0.00 0.98
3948 4728 5.624281 CGATTGTGGTGGGAGCAAAAATTAT 60.624 40.000 0.00 0.00 0.00 1.28
3949 4729 4.321601 CGATTGTGGTGGGAGCAAAAATTA 60.322 41.667 0.00 0.00 0.00 1.40
3950 4730 3.554752 CGATTGTGGTGGGAGCAAAAATT 60.555 43.478 0.00 0.00 0.00 1.82
3951 4731 2.029110 CGATTGTGGTGGGAGCAAAAAT 60.029 45.455 0.00 0.00 0.00 1.82
3952 4732 1.339610 CGATTGTGGTGGGAGCAAAAA 59.660 47.619 0.00 0.00 0.00 1.94
3953 4733 0.958091 CGATTGTGGTGGGAGCAAAA 59.042 50.000 0.00 0.00 0.00 2.44
3954 4734 0.893270 CCGATTGTGGTGGGAGCAAA 60.893 55.000 0.00 0.00 0.00 3.68
3955 4735 1.303236 CCGATTGTGGTGGGAGCAA 60.303 57.895 0.00 0.00 0.00 3.91
3956 4736 2.350895 CCGATTGTGGTGGGAGCA 59.649 61.111 0.00 0.00 0.00 4.26
3957 4737 1.745489 GACCGATTGTGGTGGGAGC 60.745 63.158 0.00 0.00 44.01 4.70
3958 4738 0.324943 AAGACCGATTGTGGTGGGAG 59.675 55.000 0.00 0.00 44.01 4.30
3959 4739 0.036164 CAAGACCGATTGTGGTGGGA 59.964 55.000 0.00 0.00 44.01 4.37
3960 4740 0.036164 TCAAGACCGATTGTGGTGGG 59.964 55.000 0.00 0.00 44.01 4.61
3961 4741 2.113860 ATCAAGACCGATTGTGGTGG 57.886 50.000 0.00 0.00 44.01 4.61
3962 4742 3.861840 ACTATCAAGACCGATTGTGGTG 58.138 45.455 0.00 0.00 44.01 4.17
3964 4744 6.978343 TTTAACTATCAAGACCGATTGTGG 57.022 37.500 0.00 0.00 32.74 4.17
3969 4749 9.901172 ACCTTAAATTTAACTATCAAGACCGAT 57.099 29.630 6.54 0.00 0.00 4.18
3970 4750 9.374838 GACCTTAAATTTAACTATCAAGACCGA 57.625 33.333 6.54 0.00 0.00 4.69
3971 4751 9.158233 TGACCTTAAATTTAACTATCAAGACCG 57.842 33.333 6.54 0.00 0.00 4.79
3985 4765 9.535878 TCGTGCTTTAATTTTGACCTTAAATTT 57.464 25.926 0.00 0.00 36.75 1.82
3986 4766 9.191995 CTCGTGCTTTAATTTTGACCTTAAATT 57.808 29.630 0.00 0.00 38.40 1.82
3987 4767 7.812669 CCTCGTGCTTTAATTTTGACCTTAAAT 59.187 33.333 0.00 0.00 0.00 1.40
3988 4768 7.013464 TCCTCGTGCTTTAATTTTGACCTTAAA 59.987 33.333 0.00 0.00 0.00 1.52
3989 4769 6.487331 TCCTCGTGCTTTAATTTTGACCTTAA 59.513 34.615 0.00 0.00 0.00 1.85
3990 4770 5.998981 TCCTCGTGCTTTAATTTTGACCTTA 59.001 36.000 0.00 0.00 0.00 2.69
3991 4771 4.825085 TCCTCGTGCTTTAATTTTGACCTT 59.175 37.500 0.00 0.00 0.00 3.50
3992 4772 4.394729 TCCTCGTGCTTTAATTTTGACCT 58.605 39.130 0.00 0.00 0.00 3.85
3993 4773 4.759516 TCCTCGTGCTTTAATTTTGACC 57.240 40.909 0.00 0.00 0.00 4.02
3994 4774 7.484959 CCTTTATCCTCGTGCTTTAATTTTGAC 59.515 37.037 0.00 0.00 0.00 3.18
3995 4775 7.392113 TCCTTTATCCTCGTGCTTTAATTTTGA 59.608 33.333 0.00 0.00 0.00 2.69
3996 4776 7.535139 TCCTTTATCCTCGTGCTTTAATTTTG 58.465 34.615 0.00 0.00 0.00 2.44
3997 4777 7.696992 TCCTTTATCCTCGTGCTTTAATTTT 57.303 32.000 0.00 0.00 0.00 1.82
3998 4778 7.628580 GCTTCCTTTATCCTCGTGCTTTAATTT 60.629 37.037 0.00 0.00 0.00 1.82
3999 4779 6.183360 GCTTCCTTTATCCTCGTGCTTTAATT 60.183 38.462 0.00 0.00 0.00 1.40
4000 4780 5.297029 GCTTCCTTTATCCTCGTGCTTTAAT 59.703 40.000 0.00 0.00 0.00 1.40
4001 4781 4.634443 GCTTCCTTTATCCTCGTGCTTTAA 59.366 41.667 0.00 0.00 0.00 1.52
4002 4782 4.189231 GCTTCCTTTATCCTCGTGCTTTA 58.811 43.478 0.00 0.00 0.00 1.85
4003 4783 3.010420 GCTTCCTTTATCCTCGTGCTTT 58.990 45.455 0.00 0.00 0.00 3.51
4004 4784 2.027192 TGCTTCCTTTATCCTCGTGCTT 60.027 45.455 0.00 0.00 0.00 3.91
4005 4785 1.555075 TGCTTCCTTTATCCTCGTGCT 59.445 47.619 0.00 0.00 0.00 4.40
4006 4786 1.666189 GTGCTTCCTTTATCCTCGTGC 59.334 52.381 0.00 0.00 0.00 5.34
4007 4787 3.252974 AGTGCTTCCTTTATCCTCGTG 57.747 47.619 0.00 0.00 0.00 4.35
4008 4788 3.767673 TGTAGTGCTTCCTTTATCCTCGT 59.232 43.478 0.00 0.00 0.00 4.18
4009 4789 4.386867 TGTAGTGCTTCCTTTATCCTCG 57.613 45.455 0.00 0.00 0.00 4.63
4010 4790 4.985409 CGATGTAGTGCTTCCTTTATCCTC 59.015 45.833 0.00 0.00 0.00 3.71
4011 4791 4.406003 ACGATGTAGTGCTTCCTTTATCCT 59.594 41.667 0.00 0.00 0.00 3.24
4012 4792 4.508124 CACGATGTAGTGCTTCCTTTATCC 59.492 45.833 0.00 0.00 35.17 2.59
4013 4793 4.508124 CCACGATGTAGTGCTTCCTTTATC 59.492 45.833 0.00 0.00 40.59 1.75
4014 4794 4.161565 TCCACGATGTAGTGCTTCCTTTAT 59.838 41.667 0.00 0.00 40.59 1.40
4015 4795 3.512329 TCCACGATGTAGTGCTTCCTTTA 59.488 43.478 0.00 0.00 40.59 1.85
4016 4796 2.301870 TCCACGATGTAGTGCTTCCTTT 59.698 45.455 0.00 0.00 40.59 3.11
4017 4797 1.899814 TCCACGATGTAGTGCTTCCTT 59.100 47.619 0.00 0.00 40.59 3.36
4018 4798 1.557099 TCCACGATGTAGTGCTTCCT 58.443 50.000 0.00 0.00 40.59 3.36
4019 4799 2.380084 TTCCACGATGTAGTGCTTCC 57.620 50.000 0.00 0.00 40.59 3.46
4020 4800 2.609459 CCATTCCACGATGTAGTGCTTC 59.391 50.000 0.00 0.00 40.59 3.86
4021 4801 2.236146 TCCATTCCACGATGTAGTGCTT 59.764 45.455 0.00 0.00 40.59 3.91
4022 4802 1.831106 TCCATTCCACGATGTAGTGCT 59.169 47.619 0.00 0.00 40.59 4.40
4023 4803 2.205074 CTCCATTCCACGATGTAGTGC 58.795 52.381 0.00 0.00 40.59 4.40
4024 4804 2.483714 CCCTCCATTCCACGATGTAGTG 60.484 54.545 0.00 0.00 41.53 2.74
4025 4805 1.762957 CCCTCCATTCCACGATGTAGT 59.237 52.381 0.00 0.00 0.00 2.73
4026 4806 2.036475 CTCCCTCCATTCCACGATGTAG 59.964 54.545 0.00 0.00 0.00 2.74
4027 4807 2.039418 CTCCCTCCATTCCACGATGTA 58.961 52.381 0.00 0.00 0.00 2.29
4028 4808 0.833287 CTCCCTCCATTCCACGATGT 59.167 55.000 0.00 0.00 0.00 3.06
4029 4809 0.833287 ACTCCCTCCATTCCACGATG 59.167 55.000 0.00 0.00 0.00 3.84
4030 4810 2.471815 TACTCCCTCCATTCCACGAT 57.528 50.000 0.00 0.00 0.00 3.73
4031 4811 2.471815 ATACTCCCTCCATTCCACGA 57.528 50.000 0.00 0.00 0.00 4.35
4032 4812 3.231818 ACTATACTCCCTCCATTCCACG 58.768 50.000 0.00 0.00 0.00 4.94
4033 4813 5.395611 ACTACTATACTCCCTCCATTCCAC 58.604 45.833 0.00 0.00 0.00 4.02
4034 4814 5.681494 ACTACTATACTCCCTCCATTCCA 57.319 43.478 0.00 0.00 0.00 3.53
4035 4815 5.653330 GCTACTACTATACTCCCTCCATTCC 59.347 48.000 0.00 0.00 0.00 3.01
4036 4816 6.151480 GTGCTACTACTATACTCCCTCCATTC 59.849 46.154 0.00 0.00 0.00 2.67
4037 4817 6.011481 GTGCTACTACTATACTCCCTCCATT 58.989 44.000 0.00 0.00 0.00 3.16
4038 4818 5.572252 GTGCTACTACTATACTCCCTCCAT 58.428 45.833 0.00 0.00 0.00 3.41
4039 4819 4.504514 CGTGCTACTACTATACTCCCTCCA 60.505 50.000 0.00 0.00 0.00 3.86
4040 4820 4.002316 CGTGCTACTACTATACTCCCTCC 58.998 52.174 0.00 0.00 0.00 4.30
4041 4821 4.002316 CCGTGCTACTACTATACTCCCTC 58.998 52.174 0.00 0.00 0.00 4.30
4042 4822 3.393941 ACCGTGCTACTACTATACTCCCT 59.606 47.826 0.00 0.00 0.00 4.20
4043 4823 3.749226 ACCGTGCTACTACTATACTCCC 58.251 50.000 0.00 0.00 0.00 4.30
4044 4824 4.391523 GCTACCGTGCTACTACTATACTCC 59.608 50.000 0.00 0.00 0.00 3.85
4045 4825 4.091220 CGCTACCGTGCTACTACTATACTC 59.909 50.000 0.00 0.00 0.00 2.59
4046 4826 3.993081 CGCTACCGTGCTACTACTATACT 59.007 47.826 0.00 0.00 0.00 2.12
4047 4827 3.124297 CCGCTACCGTGCTACTACTATAC 59.876 52.174 0.00 0.00 0.00 1.47
4048 4828 3.244215 ACCGCTACCGTGCTACTACTATA 60.244 47.826 0.00 0.00 0.00 1.31
4049 4829 2.149578 CCGCTACCGTGCTACTACTAT 58.850 52.381 0.00 0.00 0.00 2.12
4050 4830 1.134401 ACCGCTACCGTGCTACTACTA 60.134 52.381 0.00 0.00 0.00 1.82
4051 4831 0.393537 ACCGCTACCGTGCTACTACT 60.394 55.000 0.00 0.00 0.00 2.57
4052 4832 0.028637 GACCGCTACCGTGCTACTAC 59.971 60.000 0.00 0.00 0.00 2.73
4087 4900 1.079405 GTGGGACGCAAGATTCCGA 60.079 57.895 0.00 0.00 43.62 4.55
4142 5423 9.939802 AGTGACCTAAAACGTCTTATATTTCTT 57.060 29.630 0.00 0.00 0.00 2.52
4154 5435 9.420551 CTCTTTTCTAATAGTGACCTAAAACGT 57.579 33.333 0.00 0.00 0.00 3.99
4163 5444 7.421530 TGCACAACTCTTTTCTAATAGTGAC 57.578 36.000 0.00 0.00 0.00 3.67
4164 5445 8.621532 AATGCACAACTCTTTTCTAATAGTGA 57.378 30.769 0.00 0.00 0.00 3.41
4165 5446 8.725148 AGAATGCACAACTCTTTTCTAATAGTG 58.275 33.333 0.00 0.00 0.00 2.74
4169 5450 7.609532 AGCTAGAATGCACAACTCTTTTCTAAT 59.390 33.333 0.00 0.00 34.99 1.73
4170 5451 6.936900 AGCTAGAATGCACAACTCTTTTCTAA 59.063 34.615 0.00 0.00 34.99 2.10
4171 5452 6.467677 AGCTAGAATGCACAACTCTTTTCTA 58.532 36.000 0.00 0.00 34.99 2.10
4173 5454 5.619625 AGCTAGAATGCACAACTCTTTTC 57.380 39.130 0.00 0.00 34.99 2.29
4176 5457 6.396829 AAAAAGCTAGAATGCACAACTCTT 57.603 33.333 0.00 0.00 34.99 2.85
4178 5459 5.048434 AGGAAAAAGCTAGAATGCACAACTC 60.048 40.000 0.00 0.00 34.99 3.01
4179 5460 4.829492 AGGAAAAAGCTAGAATGCACAACT 59.171 37.500 0.00 0.00 34.99 3.16
4183 5464 6.215845 TCAAAAGGAAAAAGCTAGAATGCAC 58.784 36.000 0.00 0.00 34.99 4.57
4187 5640 8.918116 AGAGTTTCAAAAGGAAAAAGCTAGAAT 58.082 29.630 0.00 0.00 46.53 2.40
4190 5643 8.621286 TGTAGAGTTTCAAAAGGAAAAAGCTAG 58.379 33.333 0.00 0.00 46.53 3.42
4192 5645 7.404671 TGTAGAGTTTCAAAAGGAAAAAGCT 57.595 32.000 0.00 0.00 46.53 3.74
4207 5660 6.998673 ACCAGCTTAGAACAATTGTAGAGTTT 59.001 34.615 12.39 0.00 0.00 2.66
4234 5692 1.084289 AACGCTCAATTAACTCCCGC 58.916 50.000 0.00 0.00 0.00 6.13
4245 5703 1.522668 CCACAGATCCAAACGCTCAA 58.477 50.000 0.00 0.00 0.00 3.02
4246 5704 0.321564 CCCACAGATCCAAACGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
4247 5705 0.036388 TCCCACAGATCCAAACGCTC 60.036 55.000 0.00 0.00 0.00 5.03
4248 5706 0.321653 GTCCCACAGATCCAAACGCT 60.322 55.000 0.00 0.00 0.00 5.07
4249 5707 0.321653 AGTCCCACAGATCCAAACGC 60.322 55.000 0.00 0.00 0.00 4.84
4250 5708 1.726853 GAGTCCCACAGATCCAAACG 58.273 55.000 0.00 0.00 0.00 3.60
4251 5709 1.275291 TCGAGTCCCACAGATCCAAAC 59.725 52.381 0.00 0.00 0.00 2.93
4252 5710 1.639722 TCGAGTCCCACAGATCCAAA 58.360 50.000 0.00 0.00 0.00 3.28
4253 5711 1.757118 GATCGAGTCCCACAGATCCAA 59.243 52.381 0.00 0.00 34.90 3.53
4254 5712 1.403814 GATCGAGTCCCACAGATCCA 58.596 55.000 0.00 0.00 34.90 3.41
4255 5713 0.312416 CGATCGAGTCCCACAGATCC 59.688 60.000 10.26 0.00 36.94 3.36
4256 5714 0.318275 GCGATCGAGTCCCACAGATC 60.318 60.000 21.57 0.00 36.92 2.75
4257 5715 1.736586 GCGATCGAGTCCCACAGAT 59.263 57.895 21.57 0.00 0.00 2.90
4278 5736 1.698506 ATGCGTTTTGACCTTCCCAA 58.301 45.000 0.00 0.00 0.00 4.12
4301 5759 2.237751 CGTTCCTAATCAGCCGCCG 61.238 63.158 0.00 0.00 0.00 6.46
4327 5785 2.525629 TGGAGCTCGGACCCAACA 60.526 61.111 7.83 0.00 0.00 3.33
4367 5825 1.145162 CCACAAGCAACGCAAACCAC 61.145 55.000 0.00 0.00 0.00 4.16
4387 5845 3.396260 TGGTAGTTCGTTTCTTCCCTG 57.604 47.619 0.00 0.00 0.00 4.45
4488 5946 3.774734 TCCTGAGAGCTAACTGTAACCA 58.225 45.455 0.00 0.00 0.00 3.67
4509 5967 5.936956 GCTAGCAGCCAGTTAGATAAATCAT 59.063 40.000 10.63 0.00 34.48 2.45
4652 6110 2.143122 CACCTTGATTACAGTGCGTGT 58.857 47.619 0.00 0.00 43.86 4.49
4692 6150 2.166459 CTCCTGCTCATACTTCCGTTCA 59.834 50.000 0.00 0.00 0.00 3.18
4704 6162 3.706373 GTTCCGGCCTCCTGCTCA 61.706 66.667 0.00 0.00 40.92 4.26
4727 6185 1.985159 AGGTACCCATTTCTGCACTGA 59.015 47.619 8.74 0.00 0.00 3.41
4837 6295 0.546988 AGAACCGGGACTAAAGGCCT 60.547 55.000 6.32 0.00 0.00 5.19
4857 6315 1.153025 GGCCATTAGTCCCGGTTCC 60.153 63.158 0.00 0.00 0.00 3.62
5000 6596 4.473196 TGAGCAGTGATAAGGGGTGATTAA 59.527 41.667 0.00 0.00 0.00 1.40
5236 6913 6.432162 ACAGTGAAATATGTGACTTCATGCTT 59.568 34.615 0.00 0.00 32.08 3.91
5890 7720 2.440599 GGTGCCACCAACCAGGAT 59.559 61.111 9.55 0.00 41.22 3.24
5954 7790 2.595095 GATGCCCATTGGTCCCGA 59.405 61.111 1.20 0.00 0.00 5.14
6406 8253 1.677820 CGGCGAACCCAGGTAATCTTT 60.678 52.381 0.00 0.00 0.00 2.52
6464 8311 7.037153 ACCTTACATAAGTCATTAGAAACCCCA 60.037 37.037 0.00 0.00 0.00 4.96
6612 8459 0.679002 TCCCGAACGGAGGACACTAG 60.679 60.000 15.07 0.00 34.86 2.57
6658 8505 0.030908 CCCTACGTTCTCTCATCGCC 59.969 60.000 0.00 0.00 0.00 5.54
6702 8551 7.375834 GGGTTTTGGTTTTTCTAATCGAGAAT 58.624 34.615 0.00 0.00 43.84 2.40
6715 8564 0.978667 AGGCCACGGGTTTTGGTTTT 60.979 50.000 5.01 0.00 36.40 2.43
6788 8637 5.007921 GGTTTCGAGTCTAGATCTACCAGAC 59.992 48.000 13.99 13.99 39.19 3.51
6796 8645 4.688021 AGCATTGGTTTCGAGTCTAGATC 58.312 43.478 0.00 0.00 0.00 2.75
6797 8646 4.160439 TGAGCATTGGTTTCGAGTCTAGAT 59.840 41.667 0.00 0.00 0.00 1.98
6798 8647 3.509967 TGAGCATTGGTTTCGAGTCTAGA 59.490 43.478 0.00 0.00 0.00 2.43
6799 8648 3.849911 TGAGCATTGGTTTCGAGTCTAG 58.150 45.455 0.00 0.00 0.00 2.43
6800 8649 3.953712 TGAGCATTGGTTTCGAGTCTA 57.046 42.857 0.00 0.00 0.00 2.59
6818 8688 1.874739 CGGGGAGTAACGCACTTTTGA 60.875 52.381 0.00 0.00 37.72 2.69
6828 8698 0.460722 GGAGAGAAGCGGGGAGTAAC 59.539 60.000 0.00 0.00 0.00 2.50
6830 8700 1.453379 CGGAGAGAAGCGGGGAGTA 60.453 63.158 0.00 0.00 0.00 2.59
6879 8754 4.032900 CGTTATGATATAAGATGCCACCGC 59.967 45.833 0.00 0.00 0.00 5.68
6880 8755 5.062183 CACGTTATGATATAAGATGCCACCG 59.938 44.000 0.00 0.00 0.00 4.94
6883 8758 6.521162 ACACACGTTATGATATAAGATGCCA 58.479 36.000 3.61 0.00 0.00 4.92
6888 8763 9.016623 CGAAGAAACACACGTTATGATATAAGA 57.983 33.333 3.61 0.00 33.99 2.10
6889 8764 8.804743 ACGAAGAAACACACGTTATGATATAAG 58.195 33.333 3.61 0.00 35.47 1.73
6890 8765 8.692110 ACGAAGAAACACACGTTATGATATAA 57.308 30.769 3.61 0.00 35.47 0.98
6892 8767 7.329962 TGAACGAAGAAACACACGTTATGATAT 59.670 33.333 0.00 0.00 46.24 1.63
6914 8953 0.804989 CTTCGCCATTGTCCCTGAAC 59.195 55.000 0.00 0.00 0.00 3.18
6993 9032 3.081409 ATACCCGTTGCCTCCGCT 61.081 61.111 0.00 0.00 35.36 5.52
6995 9034 1.678598 TACCATACCCGTTGCCTCCG 61.679 60.000 0.00 0.00 0.00 4.63
7064 9103 7.070074 ACCAAAGTAGTCAGGGATAGTATCAAG 59.930 40.741 12.19 1.58 0.00 3.02
7076 9115 3.744660 AGCAAGAACCAAAGTAGTCAGG 58.255 45.455 0.00 0.00 0.00 3.86
7077 9116 4.636249 AGAGCAAGAACCAAAGTAGTCAG 58.364 43.478 0.00 0.00 0.00 3.51
7196 9240 4.213564 ACCTATATTGCTGCTGCCTATC 57.786 45.455 13.47 0.00 38.71 2.08
7378 9440 2.190841 CACGACCGGCCCAAAGTTT 61.191 57.895 0.00 0.00 0.00 2.66
7413 9475 2.028203 TGTCGCTTGATGGATGACTGAA 60.028 45.455 0.00 0.00 0.00 3.02
7414 9476 1.550072 TGTCGCTTGATGGATGACTGA 59.450 47.619 0.00 0.00 0.00 3.41
7418 9480 0.246360 ACGTGTCGCTTGATGGATGA 59.754 50.000 0.00 0.00 0.00 2.92
7421 9483 1.135489 GTCTACGTGTCGCTTGATGGA 60.135 52.381 0.00 0.00 0.00 3.41
7450 9512 8.421784 AGAAAATAGAGATGATAGCGTTTGGTA 58.578 33.333 0.00 0.00 0.00 3.25
7464 9526 7.987458 TCGCATAAGGTTGAAGAAAATAGAGAT 59.013 33.333 0.00 0.00 0.00 2.75
7470 9532 7.396540 AGATTCGCATAAGGTTGAAGAAAAT 57.603 32.000 0.00 0.00 0.00 1.82
7471 9533 6.402118 CGAGATTCGCATAAGGTTGAAGAAAA 60.402 38.462 0.00 0.00 31.14 2.29
7639 9736 2.573915 GAGGAGAAAGGAAGTGTGGGAT 59.426 50.000 0.00 0.00 0.00 3.85
7644 9741 2.977808 TGAGGAGGAGAAAGGAAGTGT 58.022 47.619 0.00 0.00 0.00 3.55
7664 9761 4.340246 GGTCCTCCCCGGCGTTTT 62.340 66.667 6.01 0.00 0.00 2.43
7690 9792 0.893270 GTGGCCATGGTTGTAGCACA 60.893 55.000 9.72 0.00 0.00 4.57
7736 9838 0.814010 AACGCCGTTTGCAACTCTCT 60.814 50.000 0.00 0.00 41.33 3.10
7808 9910 6.378564 TCCTGTATTTTGTTGTCTGGTTGAAA 59.621 34.615 0.00 0.00 0.00 2.69
7852 9954 4.893424 AACTGCGAGTTGAAGCTTTTTA 57.107 36.364 0.00 0.00 37.00 1.52
7907 10009 3.053291 GCCATGGCCGTCGTCAAA 61.053 61.111 27.24 0.00 34.56 2.69
7994 10127 3.004752 TGAAGCTTTTCCCCTCTATGC 57.995 47.619 0.00 0.00 0.00 3.14
7996 10129 3.333680 TGGTTGAAGCTTTTCCCCTCTAT 59.666 43.478 0.00 0.00 0.00 1.98
8074 10208 7.773690 GGATGTAGTAAAATATGTTGGTCCAGT 59.226 37.037 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.