Multiple sequence alignment - TraesCS1A01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G142100 chr1A 100.000 3704 0 0 1 3704 241983883 241987586 0 6841
1 TraesCS1A01G142100 chr1A 97.763 2816 53 2 898 3704 530775327 530772513 0 4843
2 TraesCS1A01G142100 chr1A 96.945 2815 68 8 899 3704 13720045 13722850 0 4706
3 TraesCS1A01G142100 chr2A 97.309 2824 58 2 899 3704 753951605 753954428 0 4778
4 TraesCS1A01G142100 chr3A 97.096 2824 62 4 899 3704 713795703 713798524 0 4743
5 TraesCS1A01G142100 chr3A 96.376 2842 71 5 895 3704 699770271 699773112 0 4649
6 TraesCS1A01G142100 chr3A 96.828 2774 65 4 898 3653 725985799 725988567 0 4614
7 TraesCS1A01G142100 chr6A 96.954 2823 61 4 900 3704 369654872 369657687 0 4713
8 TraesCS1A01G142100 chr5A 96.063 2794 72 7 899 3660 9494743 9491956 0 4516
9 TraesCS1A01G142100 chr7A 97.197 2319 47 3 1403 3704 107350018 107352335 0 3906
10 TraesCS1A01G142100 chr1D 93.588 2012 102 13 899 2887 481961642 481959635 0 2976
11 TraesCS1A01G142100 chr1D 98.222 900 15 1 1 899 194456461 194457360 0 1572
12 TraesCS1A01G142100 chr5D 92.060 1990 104 29 899 2869 474542533 474544487 0 2750
13 TraesCS1A01G142100 chr5D 91.474 1079 74 12 899 1961 423748938 423750014 0 1467
14 TraesCS1A01G142100 chr5D 89.503 1086 68 21 899 1961 125657679 125658741 0 1332
15 TraesCS1A01G142100 chrUn 97.642 933 21 1 2772 3704 305973244 305972313 0 1600
16 TraesCS1A01G142100 chrUn 97.642 933 21 1 2772 3704 359036840 359035909 0 1600
17 TraesCS1A01G142100 chr1B 97.889 900 15 2 1 899 271906100 271905204 0 1554
18 TraesCS1A01G142100 chr2D 90.185 1080 66 20 899 1961 102619779 102620835 0 1371
19 TraesCS1A01G142100 chr3D 87.834 1085 69 34 896 1961 152702893 152703933 0 1214


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G142100 chr1A 241983883 241987586 3703 False 6841 6841 100.000 1 3704 1 chr1A.!!$F2 3703
1 TraesCS1A01G142100 chr1A 530772513 530775327 2814 True 4843 4843 97.763 898 3704 1 chr1A.!!$R1 2806
2 TraesCS1A01G142100 chr1A 13720045 13722850 2805 False 4706 4706 96.945 899 3704 1 chr1A.!!$F1 2805
3 TraesCS1A01G142100 chr2A 753951605 753954428 2823 False 4778 4778 97.309 899 3704 1 chr2A.!!$F1 2805
4 TraesCS1A01G142100 chr3A 713795703 713798524 2821 False 4743 4743 97.096 899 3704 1 chr3A.!!$F2 2805
5 TraesCS1A01G142100 chr3A 699770271 699773112 2841 False 4649 4649 96.376 895 3704 1 chr3A.!!$F1 2809
6 TraesCS1A01G142100 chr3A 725985799 725988567 2768 False 4614 4614 96.828 898 3653 1 chr3A.!!$F3 2755
7 TraesCS1A01G142100 chr6A 369654872 369657687 2815 False 4713 4713 96.954 900 3704 1 chr6A.!!$F1 2804
8 TraesCS1A01G142100 chr5A 9491956 9494743 2787 True 4516 4516 96.063 899 3660 1 chr5A.!!$R1 2761
9 TraesCS1A01G142100 chr7A 107350018 107352335 2317 False 3906 3906 97.197 1403 3704 1 chr7A.!!$F1 2301
10 TraesCS1A01G142100 chr1D 481959635 481961642 2007 True 2976 2976 93.588 899 2887 1 chr1D.!!$R1 1988
11 TraesCS1A01G142100 chr1D 194456461 194457360 899 False 1572 1572 98.222 1 899 1 chr1D.!!$F1 898
12 TraesCS1A01G142100 chr5D 474542533 474544487 1954 False 2750 2750 92.060 899 2869 1 chr5D.!!$F3 1970
13 TraesCS1A01G142100 chr5D 423748938 423750014 1076 False 1467 1467 91.474 899 1961 1 chr5D.!!$F2 1062
14 TraesCS1A01G142100 chr5D 125657679 125658741 1062 False 1332 1332 89.503 899 1961 1 chr5D.!!$F1 1062
15 TraesCS1A01G142100 chrUn 305972313 305973244 931 True 1600 1600 97.642 2772 3704 1 chrUn.!!$R1 932
16 TraesCS1A01G142100 chrUn 359035909 359036840 931 True 1600 1600 97.642 2772 3704 1 chrUn.!!$R2 932
17 TraesCS1A01G142100 chr1B 271905204 271906100 896 True 1554 1554 97.889 1 899 1 chr1B.!!$R1 898
18 TraesCS1A01G142100 chr2D 102619779 102620835 1056 False 1371 1371 90.185 899 1961 1 chr2D.!!$F1 1062
19 TraesCS1A01G142100 chr3D 152702893 152703933 1040 False 1214 1214 87.834 896 1961 1 chr3D.!!$F1 1065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 700 0.102300 CGATGGTGTAGGTGCATCGA 59.898 55.0 0.14 0.0 45.28 3.59 F
874 875 0.106967 GGAGGGAATGGCAGAGGAAC 60.107 60.0 0.00 0.0 0.00 3.62 F
879 880 0.181350 GAATGGCAGAGGAACGGGAT 59.819 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2592 1.131638 TGCACTTCACCTCCTTCAGT 58.868 50.000 0.0 0.0 0.00 3.41 R
2557 2813 3.244561 CCACCAGAAACTCCAGCTTCTTA 60.245 47.826 0.0 0.0 28.83 2.10 R
2827 3119 5.449999 GCTAACAACATTACATAACTGGGGC 60.450 44.000 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 0.178068 GCTGCGGGAAGTCCTTCATA 59.822 55.000 9.12 0.00 41.20 2.15
228 229 2.753043 TCGTACAGGAGGTCGGGC 60.753 66.667 0.00 0.00 0.00 6.13
229 230 3.834799 CGTACAGGAGGTCGGGCC 61.835 72.222 0.00 0.00 37.58 5.80
230 231 3.468140 GTACAGGAGGTCGGGCCC 61.468 72.222 13.57 13.57 38.26 5.80
254 255 4.775440 CGTAGGAGTCGAAGTAGTGTAG 57.225 50.000 0.00 0.00 0.00 2.74
255 256 3.555139 CGTAGGAGTCGAAGTAGTGTAGG 59.445 52.174 0.00 0.00 0.00 3.18
256 257 3.996921 AGGAGTCGAAGTAGTGTAGGA 57.003 47.619 0.00 0.00 0.00 2.94
257 258 3.876341 AGGAGTCGAAGTAGTGTAGGAG 58.124 50.000 0.00 0.00 0.00 3.69
258 259 3.518705 AGGAGTCGAAGTAGTGTAGGAGA 59.481 47.826 0.00 0.00 0.00 3.71
259 260 4.164604 AGGAGTCGAAGTAGTGTAGGAGAT 59.835 45.833 0.00 0.00 0.00 2.75
260 261 4.512571 GGAGTCGAAGTAGTGTAGGAGATC 59.487 50.000 0.00 0.00 0.00 2.75
261 262 4.121317 AGTCGAAGTAGTGTAGGAGATCG 58.879 47.826 0.00 0.00 0.00 3.69
262 263 3.870419 GTCGAAGTAGTGTAGGAGATCGT 59.130 47.826 0.00 0.00 0.00 3.73
263 264 4.025813 GTCGAAGTAGTGTAGGAGATCGTC 60.026 50.000 0.00 0.00 0.00 4.20
264 265 3.060406 CGAAGTAGTGTAGGAGATCGTCG 60.060 52.174 0.00 0.00 0.00 5.12
265 266 2.836262 AGTAGTGTAGGAGATCGTCGG 58.164 52.381 0.00 0.00 0.00 4.79
266 267 1.872313 GTAGTGTAGGAGATCGTCGGG 59.128 57.143 0.00 0.00 0.00 5.14
267 268 0.465824 AGTGTAGGAGATCGTCGGGG 60.466 60.000 0.00 0.00 0.00 5.73
268 269 0.465097 GTGTAGGAGATCGTCGGGGA 60.465 60.000 0.00 0.00 0.00 4.81
269 270 0.256752 TGTAGGAGATCGTCGGGGAA 59.743 55.000 0.00 0.00 0.00 3.97
270 271 0.953003 GTAGGAGATCGTCGGGGAAG 59.047 60.000 0.00 0.00 0.00 3.46
271 272 0.549950 TAGGAGATCGTCGGGGAAGT 59.450 55.000 0.00 0.00 0.00 3.01
272 273 0.752376 AGGAGATCGTCGGGGAAGTC 60.752 60.000 0.00 0.00 0.00 3.01
273 274 1.355916 GAGATCGTCGGGGAAGTCG 59.644 63.158 0.00 0.00 0.00 4.18
274 275 1.375098 GAGATCGTCGGGGAAGTCGT 61.375 60.000 0.00 0.00 0.00 4.34
275 276 1.063811 GATCGTCGGGGAAGTCGTC 59.936 63.158 0.00 0.00 0.00 4.20
276 277 2.643764 GATCGTCGGGGAAGTCGTCG 62.644 65.000 0.00 0.00 39.60 5.12
277 278 4.471726 CGTCGGGGAAGTCGTCGG 62.472 72.222 0.00 0.00 36.06 4.79
278 279 3.058160 GTCGGGGAAGTCGTCGGA 61.058 66.667 0.00 0.00 0.00 4.55
279 280 2.749044 TCGGGGAAGTCGTCGGAG 60.749 66.667 0.00 0.00 0.00 4.63
280 281 2.749044 CGGGGAAGTCGTCGGAGA 60.749 66.667 0.00 0.00 0.00 3.71
281 282 2.119655 CGGGGAAGTCGTCGGAGAT 61.120 63.158 0.00 0.00 40.67 2.75
282 283 1.437986 GGGGAAGTCGTCGGAGATG 59.562 63.158 0.00 0.00 46.63 2.90
291 292 2.026522 GTCGGAGATGAGGGAGTCG 58.973 63.158 0.00 0.00 40.67 4.18
292 293 1.824329 TCGGAGATGAGGGAGTCGC 60.824 63.158 0.00 0.00 0.00 5.19
293 294 2.725008 GGAGATGAGGGAGTCGCG 59.275 66.667 0.00 0.00 0.00 5.87
294 295 2.725008 GAGATGAGGGAGTCGCGG 59.275 66.667 6.13 0.00 0.00 6.46
295 296 1.824329 GAGATGAGGGAGTCGCGGA 60.824 63.158 6.13 0.00 0.00 5.54
296 297 2.065906 GAGATGAGGGAGTCGCGGAC 62.066 65.000 6.13 3.09 0.00 4.79
297 298 3.140225 GATGAGGGAGTCGCGGACC 62.140 68.421 6.13 7.46 32.18 4.46
298 299 3.663815 ATGAGGGAGTCGCGGACCT 62.664 63.158 6.13 8.99 35.67 3.85
299 300 3.827898 GAGGGAGTCGCGGACCTG 61.828 72.222 6.13 0.00 32.42 4.00
303 304 3.827898 GAGTCGCGGACCTGGGAG 61.828 72.222 6.13 0.00 32.18 4.30
311 312 4.131088 GACCTGGGAGGCGACGAC 62.131 72.222 0.00 0.00 39.63 4.34
314 315 4.180946 CTGGGAGGCGACGACGAG 62.181 72.222 12.29 0.00 42.66 4.18
323 324 2.851104 GACGACGAGGCGGTTTTG 59.149 61.111 0.00 0.00 35.12 2.44
324 325 3.291167 GACGACGAGGCGGTTTTGC 62.291 63.158 0.00 0.00 35.12 3.68
325 326 3.041940 CGACGAGGCGGTTTTGCT 61.042 61.111 0.00 0.00 34.52 3.91
326 327 2.861006 GACGAGGCGGTTTTGCTC 59.139 61.111 0.00 0.00 34.52 4.26
327 328 3.011760 GACGAGGCGGTTTTGCTCG 62.012 63.158 0.00 0.00 39.61 5.03
328 329 2.736995 CGAGGCGGTTTTGCTCGA 60.737 61.111 0.00 0.00 37.55 4.04
329 330 2.861006 GAGGCGGTTTTGCTCGAC 59.139 61.111 0.00 0.00 34.52 4.20
330 331 3.011760 GAGGCGGTTTTGCTCGACG 62.012 63.158 0.00 0.00 39.74 5.12
332 333 4.736631 GCGGTTTTGCTCGACGCC 62.737 66.667 3.22 0.00 44.01 5.68
333 334 4.424430 CGGTTTTGCTCGACGCCG 62.424 66.667 4.73 0.00 38.05 6.46
334 335 4.084888 GGTTTTGCTCGACGCCGG 62.085 66.667 0.00 0.00 38.05 6.13
335 336 3.039588 GTTTTGCTCGACGCCGGA 61.040 61.111 5.05 0.00 38.05 5.14
336 337 3.039588 TTTTGCTCGACGCCGGAC 61.040 61.111 5.05 0.00 38.05 4.79
337 338 3.793775 TTTTGCTCGACGCCGGACA 62.794 57.895 5.05 0.00 38.05 4.02
338 339 3.583276 TTTGCTCGACGCCGGACAT 62.583 57.895 5.05 0.00 38.05 3.06
339 340 4.794439 TGCTCGACGCCGGACATG 62.794 66.667 5.05 0.00 38.05 3.21
357 358 4.227134 CCGGTGGCCTCCTCGATG 62.227 72.222 21.24 5.55 0.00 3.84
358 359 4.227134 CGGTGGCCTCCTCGATGG 62.227 72.222 21.24 1.07 37.10 3.51
359 360 2.764128 GGTGGCCTCCTCGATGGA 60.764 66.667 16.91 3.89 43.86 3.41
371 372 3.407967 GATGGAGGCCGGGGTGAA 61.408 66.667 2.18 0.00 0.00 3.18
372 373 3.406595 GATGGAGGCCGGGGTGAAG 62.407 68.421 2.18 0.00 0.00 3.02
393 394 2.190843 TCGCGGGAGAGAGAGGAG 59.809 66.667 6.13 0.00 33.73 3.69
394 395 2.190843 CGCGGGAGAGAGAGGAGA 59.809 66.667 0.00 0.00 0.00 3.71
395 396 1.228124 CGCGGGAGAGAGAGGAGAT 60.228 63.158 0.00 0.00 0.00 2.75
396 397 1.514678 CGCGGGAGAGAGAGGAGATG 61.515 65.000 0.00 0.00 0.00 2.90
397 398 0.179004 GCGGGAGAGAGAGGAGATGA 60.179 60.000 0.00 0.00 0.00 2.92
398 399 1.896220 CGGGAGAGAGAGGAGATGAG 58.104 60.000 0.00 0.00 0.00 2.90
399 400 1.545428 CGGGAGAGAGAGGAGATGAGG 60.545 61.905 0.00 0.00 0.00 3.86
400 401 1.203050 GGGAGAGAGAGGAGATGAGGG 60.203 61.905 0.00 0.00 0.00 4.30
401 402 1.203050 GGAGAGAGAGGAGATGAGGGG 60.203 61.905 0.00 0.00 0.00 4.79
402 403 0.188342 AGAGAGAGGAGATGAGGGGC 59.812 60.000 0.00 0.00 0.00 5.80
403 404 1.152567 AGAGAGGAGATGAGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
404 405 2.841988 AGAGGAGATGAGGGGCGC 60.842 66.667 0.00 0.00 0.00 6.53
405 406 4.292178 GAGGAGATGAGGGGCGCG 62.292 72.222 0.00 0.00 0.00 6.86
407 408 3.224324 GGAGATGAGGGGCGCGTA 61.224 66.667 8.43 0.00 0.00 4.42
408 409 2.027751 GAGATGAGGGGCGCGTAC 59.972 66.667 8.43 0.21 0.00 3.67
409 410 2.442272 AGATGAGGGGCGCGTACT 60.442 61.111 8.43 3.10 0.00 2.73
410 411 2.027751 GATGAGGGGCGCGTACTC 59.972 66.667 8.43 13.52 0.00 2.59
411 412 3.825833 GATGAGGGGCGCGTACTCG 62.826 68.421 8.43 0.00 40.37 4.18
413 414 3.204827 GAGGGGCGCGTACTCGTA 61.205 66.667 8.43 0.00 39.49 3.43
414 415 3.460854 GAGGGGCGCGTACTCGTAC 62.461 68.421 8.43 0.58 39.49 3.67
415 416 4.559229 GGGGCGCGTACTCGTACC 62.559 72.222 8.43 9.48 39.49 3.34
416 417 3.814268 GGGCGCGTACTCGTACCA 61.814 66.667 8.43 0.00 39.49 3.25
417 418 2.277756 GGCGCGTACTCGTACCAG 60.278 66.667 8.43 0.00 39.49 4.00
418 419 2.948134 GCGCGTACTCGTACCAGC 60.948 66.667 8.43 4.25 39.49 4.85
419 420 2.646862 CGCGTACTCGTACCAGCG 60.647 66.667 12.55 12.55 38.67 5.18
420 421 2.277756 GCGTACTCGTACCAGCGG 60.278 66.667 1.92 0.00 39.49 5.52
421 422 2.277756 CGTACTCGTACCAGCGGC 60.278 66.667 0.00 0.00 32.61 6.53
422 423 2.103736 GTACTCGTACCAGCGGCC 59.896 66.667 0.00 0.00 0.00 6.13
423 424 3.142838 TACTCGTACCAGCGGCCC 61.143 66.667 0.00 0.00 0.00 5.80
424 425 3.942377 TACTCGTACCAGCGGCCCA 62.942 63.158 0.00 0.00 0.00 5.36
425 426 3.849951 CTCGTACCAGCGGCCCAT 61.850 66.667 0.00 0.00 0.00 4.00
426 427 4.155733 TCGTACCAGCGGCCCATG 62.156 66.667 0.00 0.00 0.00 3.66
460 461 3.753434 CGAGGCGCTCAGTGAGGT 61.753 66.667 21.54 0.00 0.00 3.85
461 462 2.183046 GAGGCGCTCAGTGAGGTC 59.817 66.667 21.54 12.84 0.00 3.85
462 463 3.691744 GAGGCGCTCAGTGAGGTCG 62.692 68.421 21.54 17.30 0.00 4.79
463 464 3.749064 GGCGCTCAGTGAGGTCGA 61.749 66.667 21.54 0.00 0.00 4.20
464 465 2.202544 GCGCTCAGTGAGGTCGAG 60.203 66.667 21.54 0.00 0.00 4.04
465 466 2.487428 CGCTCAGTGAGGTCGAGG 59.513 66.667 21.54 0.00 0.00 4.63
466 467 2.336478 CGCTCAGTGAGGTCGAGGT 61.336 63.158 21.54 0.00 0.00 3.85
467 468 1.867919 CGCTCAGTGAGGTCGAGGTT 61.868 60.000 21.54 0.00 0.00 3.50
468 469 0.389166 GCTCAGTGAGGTCGAGGTTG 60.389 60.000 21.54 0.00 0.00 3.77
469 470 0.389166 CTCAGTGAGGTCGAGGTTGC 60.389 60.000 12.67 0.00 0.00 4.17
470 471 1.734477 CAGTGAGGTCGAGGTTGCG 60.734 63.158 0.00 0.00 0.00 4.85
471 472 2.432628 GTGAGGTCGAGGTTGCGG 60.433 66.667 0.00 0.00 0.00 5.69
472 473 2.915659 TGAGGTCGAGGTTGCGGT 60.916 61.111 0.00 0.00 0.00 5.68
473 474 1.604308 TGAGGTCGAGGTTGCGGTA 60.604 57.895 0.00 0.00 0.00 4.02
474 475 1.180456 TGAGGTCGAGGTTGCGGTAA 61.180 55.000 0.00 0.00 0.00 2.85
475 476 0.458025 GAGGTCGAGGTTGCGGTAAG 60.458 60.000 0.00 0.00 0.00 2.34
476 477 1.183676 AGGTCGAGGTTGCGGTAAGT 61.184 55.000 0.00 0.00 0.00 2.24
477 478 0.735287 GGTCGAGGTTGCGGTAAGTC 60.735 60.000 0.00 0.00 0.00 3.01
478 479 0.243095 GTCGAGGTTGCGGTAAGTCT 59.757 55.000 0.00 0.00 0.00 3.24
479 480 0.524862 TCGAGGTTGCGGTAAGTCTC 59.475 55.000 0.00 0.00 0.00 3.36
480 481 0.797249 CGAGGTTGCGGTAAGTCTCG 60.797 60.000 13.64 13.64 37.12 4.04
481 482 0.458025 GAGGTTGCGGTAAGTCTCGG 60.458 60.000 0.00 0.00 0.00 4.63
482 483 1.447314 GGTTGCGGTAAGTCTCGGG 60.447 63.158 0.00 0.00 0.00 5.14
483 484 2.098831 GTTGCGGTAAGTCTCGGGC 61.099 63.158 0.00 0.00 0.00 6.13
484 485 2.575893 TTGCGGTAAGTCTCGGGCA 61.576 57.895 0.00 0.00 0.00 5.36
485 486 2.202756 GCGGTAAGTCTCGGGCAG 60.203 66.667 0.00 0.00 0.00 4.85
486 487 2.494918 CGGTAAGTCTCGGGCAGG 59.505 66.667 0.00 0.00 0.00 4.85
487 488 2.901042 GGTAAGTCTCGGGCAGGG 59.099 66.667 0.00 0.00 0.00 4.45
488 489 2.732619 GGTAAGTCTCGGGCAGGGG 61.733 68.421 0.00 0.00 0.00 4.79
489 490 2.365105 TAAGTCTCGGGCAGGGGG 60.365 66.667 0.00 0.00 0.00 5.40
490 491 3.248248 TAAGTCTCGGGCAGGGGGT 62.248 63.158 0.00 0.00 0.00 4.95
491 492 2.758852 TAAGTCTCGGGCAGGGGGTT 62.759 60.000 0.00 0.00 0.00 4.11
492 493 2.686106 GTCTCGGGCAGGGGGTTA 60.686 66.667 0.00 0.00 0.00 2.85
493 494 2.365105 TCTCGGGCAGGGGGTTAG 60.365 66.667 0.00 0.00 0.00 2.34
494 495 3.480133 CTCGGGCAGGGGGTTAGG 61.480 72.222 0.00 0.00 0.00 2.69
506 507 4.397832 GTTAGGCGGCGGGTGGAA 62.398 66.667 9.78 0.00 0.00 3.53
507 508 4.090588 TTAGGCGGCGGGTGGAAG 62.091 66.667 9.78 0.00 0.00 3.46
515 516 3.006728 CGGGTGGAAGGGCTGGTA 61.007 66.667 0.00 0.00 0.00 3.25
516 517 2.675371 GGGTGGAAGGGCTGGTAC 59.325 66.667 0.00 0.00 0.00 3.34
517 518 2.228480 GGGTGGAAGGGCTGGTACA 61.228 63.158 0.00 0.00 0.00 2.90
565 566 4.424711 TGCGGGGGAGCATTCCAC 62.425 66.667 0.00 0.00 46.96 4.02
620 621 4.247380 GCTGCCGGGGAGGATGAG 62.247 72.222 17.79 0.00 45.00 2.90
621 622 4.247380 CTGCCGGGGAGGATGAGC 62.247 72.222 7.81 0.00 45.00 4.26
622 623 4.804420 TGCCGGGGAGGATGAGCT 62.804 66.667 2.18 0.00 45.00 4.09
623 624 3.483869 GCCGGGGAGGATGAGCTT 61.484 66.667 2.18 0.00 45.00 3.74
624 625 2.507944 CCGGGGAGGATGAGCTTG 59.492 66.667 0.00 0.00 45.00 4.01
625 626 2.203126 CGGGGAGGATGAGCTTGC 60.203 66.667 0.00 0.00 0.00 4.01
626 627 2.194326 GGGGAGGATGAGCTTGCC 59.806 66.667 0.00 0.00 32.98 4.52
627 628 2.203126 GGGAGGATGAGCTTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
628 629 2.899339 GGAGGATGAGCTTGCCGC 60.899 66.667 0.00 0.00 39.57 6.53
629 630 2.899339 GAGGATGAGCTTGCCGCC 60.899 66.667 0.00 0.00 40.39 6.13
630 631 4.845580 AGGATGAGCTTGCCGCCG 62.846 66.667 0.00 0.00 40.39 6.46
632 633 3.127533 GATGAGCTTGCCGCCGTT 61.128 61.111 0.00 0.00 40.39 4.44
633 634 3.100862 GATGAGCTTGCCGCCGTTC 62.101 63.158 0.00 0.00 40.39 3.95
677 678 2.764128 TCCGGGGAGGATGAGTGC 60.764 66.667 0.00 0.00 45.98 4.40
678 679 4.227134 CCGGGGAGGATGAGTGCG 62.227 72.222 0.00 0.00 45.00 5.34
679 680 4.227134 CGGGGAGGATGAGTGCGG 62.227 72.222 0.00 0.00 0.00 5.69
680 681 4.554036 GGGGAGGATGAGTGCGGC 62.554 72.222 0.00 0.00 0.00 6.53
681 682 4.899239 GGGAGGATGAGTGCGGCG 62.899 72.222 0.51 0.51 0.00 6.46
682 683 3.838271 GGAGGATGAGTGCGGCGA 61.838 66.667 12.98 0.00 0.00 5.54
683 684 2.419198 GAGGATGAGTGCGGCGAT 59.581 61.111 12.98 0.00 0.00 4.58
684 685 1.953138 GAGGATGAGTGCGGCGATG 60.953 63.158 12.98 0.00 0.00 3.84
685 686 2.969238 GGATGAGTGCGGCGATGG 60.969 66.667 12.98 0.00 0.00 3.51
686 687 2.202932 GATGAGTGCGGCGATGGT 60.203 61.111 12.98 0.00 0.00 3.55
687 688 2.512286 ATGAGTGCGGCGATGGTG 60.512 61.111 12.98 0.00 0.00 4.17
688 689 3.315142 ATGAGTGCGGCGATGGTGT 62.315 57.895 12.98 0.00 0.00 4.16
689 690 1.955495 ATGAGTGCGGCGATGGTGTA 61.955 55.000 12.98 0.00 0.00 2.90
690 691 1.878522 GAGTGCGGCGATGGTGTAG 60.879 63.158 12.98 0.00 0.00 2.74
691 692 2.890474 GTGCGGCGATGGTGTAGG 60.890 66.667 12.98 0.00 0.00 3.18
692 693 3.387091 TGCGGCGATGGTGTAGGT 61.387 61.111 12.98 0.00 0.00 3.08
693 694 2.890474 GCGGCGATGGTGTAGGTG 60.890 66.667 12.98 0.00 0.00 4.00
694 695 2.890474 CGGCGATGGTGTAGGTGC 60.890 66.667 0.00 0.00 0.00 5.01
695 696 2.267642 GGCGATGGTGTAGGTGCA 59.732 61.111 0.00 0.00 0.00 4.57
696 697 1.153168 GGCGATGGTGTAGGTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
697 698 1.160329 GGCGATGGTGTAGGTGCATC 61.160 60.000 0.00 0.00 0.00 3.91
698 699 1.490693 GCGATGGTGTAGGTGCATCG 61.491 60.000 1.50 1.50 45.25 3.84
699 700 0.102300 CGATGGTGTAGGTGCATCGA 59.898 55.000 0.14 0.00 45.28 3.59
700 701 1.571919 GATGGTGTAGGTGCATCGAC 58.428 55.000 2.87 2.87 0.00 4.20
701 702 0.179111 ATGGTGTAGGTGCATCGACG 60.179 55.000 5.72 0.00 0.00 5.12
702 703 2.165301 GGTGTAGGTGCATCGACGC 61.165 63.158 14.60 14.60 0.00 5.19
703 704 2.165301 GTGTAGGTGCATCGACGCC 61.165 63.158 12.24 0.00 40.71 5.68
704 705 2.954868 GTAGGTGCATCGACGCCG 60.955 66.667 0.00 0.00 45.23 6.46
705 706 4.201679 TAGGTGCATCGACGCCGG 62.202 66.667 0.00 0.00 45.23 6.13
725 726 4.394712 GTGGTGGGCGGTGGAGAG 62.395 72.222 0.00 0.00 0.00 3.20
732 733 4.785453 GCGGTGGAGAGGGGCTTG 62.785 72.222 0.00 0.00 0.00 4.01
733 734 4.785453 CGGTGGAGAGGGGCTTGC 62.785 72.222 0.00 0.00 0.00 4.01
734 735 4.785453 GGTGGAGAGGGGCTTGCG 62.785 72.222 0.00 0.00 0.00 4.85
735 736 4.785453 GTGGAGAGGGGCTTGCGG 62.785 72.222 0.00 0.00 0.00 5.69
737 738 4.785453 GGAGAGGGGCTTGCGGTG 62.785 72.222 0.00 0.00 0.00 4.94
738 739 4.785453 GAGAGGGGCTTGCGGTGG 62.785 72.222 0.00 0.00 0.00 4.61
780 781 4.715130 TGGGGGTGGGAGACGGAG 62.715 72.222 0.00 0.00 0.00 4.63
781 782 4.393778 GGGGGTGGGAGACGGAGA 62.394 72.222 0.00 0.00 0.00 3.71
782 783 2.760385 GGGGTGGGAGACGGAGAG 60.760 72.222 0.00 0.00 0.00 3.20
783 784 3.462678 GGGTGGGAGACGGAGAGC 61.463 72.222 0.00 0.00 0.00 4.09
784 785 2.680352 GGTGGGAGACGGAGAGCA 60.680 66.667 0.00 0.00 0.00 4.26
785 786 2.060980 GGTGGGAGACGGAGAGCAT 61.061 63.158 0.00 0.00 0.00 3.79
786 787 1.142748 GTGGGAGACGGAGAGCATG 59.857 63.158 0.00 0.00 0.00 4.06
787 788 2.060383 TGGGAGACGGAGAGCATGG 61.060 63.158 0.00 0.00 0.00 3.66
788 789 2.060980 GGGAGACGGAGAGCATGGT 61.061 63.158 0.00 0.00 0.00 3.55
789 790 1.142748 GGAGACGGAGAGCATGGTG 59.857 63.158 0.00 0.00 0.00 4.17
790 791 1.142748 GAGACGGAGAGCATGGTGG 59.857 63.158 0.00 0.00 0.00 4.61
791 792 1.608717 GAGACGGAGAGCATGGTGGT 61.609 60.000 0.00 0.00 0.00 4.16
792 793 1.448540 GACGGAGAGCATGGTGGTG 60.449 63.158 0.00 0.00 0.00 4.17
793 794 1.888436 GACGGAGAGCATGGTGGTGA 61.888 60.000 0.00 0.00 0.00 4.02
794 795 1.267574 ACGGAGAGCATGGTGGTGAT 61.268 55.000 0.00 0.00 0.00 3.06
795 796 0.752658 CGGAGAGCATGGTGGTGATA 59.247 55.000 0.00 0.00 0.00 2.15
796 797 1.138859 CGGAGAGCATGGTGGTGATAA 59.861 52.381 0.00 0.00 0.00 1.75
797 798 2.804572 CGGAGAGCATGGTGGTGATAAG 60.805 54.545 0.00 0.00 0.00 1.73
798 799 2.486191 GGAGAGCATGGTGGTGATAAGG 60.486 54.545 0.00 0.00 0.00 2.69
799 800 2.171448 GAGAGCATGGTGGTGATAAGGT 59.829 50.000 0.00 0.00 0.00 3.50
800 801 2.092753 AGAGCATGGTGGTGATAAGGTG 60.093 50.000 0.00 0.00 0.00 4.00
801 802 1.915489 AGCATGGTGGTGATAAGGTGA 59.085 47.619 0.00 0.00 0.00 4.02
802 803 2.308570 AGCATGGTGGTGATAAGGTGAA 59.691 45.455 0.00 0.00 0.00 3.18
803 804 2.684881 GCATGGTGGTGATAAGGTGAAG 59.315 50.000 0.00 0.00 0.00 3.02
804 805 3.282021 CATGGTGGTGATAAGGTGAAGG 58.718 50.000 0.00 0.00 0.00 3.46
805 806 1.633432 TGGTGGTGATAAGGTGAAGGG 59.367 52.381 0.00 0.00 0.00 3.95
806 807 1.913419 GGTGGTGATAAGGTGAAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
807 808 2.092914 GGTGGTGATAAGGTGAAGGGAG 60.093 54.545 0.00 0.00 0.00 4.30
808 809 2.092914 GTGGTGATAAGGTGAAGGGAGG 60.093 54.545 0.00 0.00 0.00 4.30
809 810 2.225779 TGGTGATAAGGTGAAGGGAGGA 60.226 50.000 0.00 0.00 0.00 3.71
810 811 2.436173 GGTGATAAGGTGAAGGGAGGAG 59.564 54.545 0.00 0.00 0.00 3.69
811 812 2.119495 TGATAAGGTGAAGGGAGGAGC 58.881 52.381 0.00 0.00 0.00 4.70
812 813 1.069358 GATAAGGTGAAGGGAGGAGCG 59.931 57.143 0.00 0.00 0.00 5.03
813 814 1.614241 TAAGGTGAAGGGAGGAGCGC 61.614 60.000 0.00 0.00 0.00 5.92
814 815 3.706373 GGTGAAGGGAGGAGCGCA 61.706 66.667 11.47 0.00 0.00 6.09
815 816 2.125350 GTGAAGGGAGGAGCGCAG 60.125 66.667 11.47 0.00 0.00 5.18
816 817 2.283894 TGAAGGGAGGAGCGCAGA 60.284 61.111 11.47 0.00 0.00 4.26
817 818 2.354401 TGAAGGGAGGAGCGCAGAG 61.354 63.158 11.47 0.00 0.00 3.35
818 819 3.080121 AAGGGAGGAGCGCAGAGG 61.080 66.667 11.47 0.00 0.00 3.69
819 820 3.608759 AAGGGAGGAGCGCAGAGGA 62.609 63.158 11.47 0.00 0.00 3.71
820 821 3.077556 GGGAGGAGCGCAGAGGAA 61.078 66.667 11.47 0.00 0.00 3.36
821 822 2.498726 GGAGGAGCGCAGAGGAAG 59.501 66.667 11.47 0.00 0.00 3.46
822 823 2.202864 GAGGAGCGCAGAGGAAGC 60.203 66.667 11.47 0.00 0.00 3.86
823 824 2.999648 AGGAGCGCAGAGGAAGCA 61.000 61.111 11.47 0.00 0.00 3.91
824 825 2.511145 GGAGCGCAGAGGAAGCAG 60.511 66.667 11.47 0.00 0.00 4.24
825 826 2.511145 GAGCGCAGAGGAAGCAGG 60.511 66.667 11.47 0.00 0.00 4.85
826 827 4.093291 AGCGCAGAGGAAGCAGGG 62.093 66.667 11.47 0.00 0.00 4.45
828 829 3.393970 CGCAGAGGAAGCAGGGGA 61.394 66.667 0.00 0.00 0.00 4.81
829 830 2.588989 GCAGAGGAAGCAGGGGAG 59.411 66.667 0.00 0.00 0.00 4.30
830 831 2.588989 CAGAGGAAGCAGGGGAGC 59.411 66.667 0.00 0.00 0.00 4.70
838 839 3.642977 AGCAGGGGAGCTTATCTCA 57.357 52.632 0.00 0.00 43.70 3.27
839 840 2.115337 AGCAGGGGAGCTTATCTCAT 57.885 50.000 0.00 0.00 43.70 2.90
840 841 1.977129 AGCAGGGGAGCTTATCTCATC 59.023 52.381 0.00 0.00 43.70 2.92
841 842 1.977129 GCAGGGGAGCTTATCTCATCT 59.023 52.381 0.00 0.00 43.70 2.90
842 843 2.289569 GCAGGGGAGCTTATCTCATCTG 60.290 54.545 0.00 8.39 43.70 2.90
843 844 1.977129 AGGGGAGCTTATCTCATCTGC 59.023 52.381 0.00 0.00 43.70 4.26
844 845 1.977129 GGGGAGCTTATCTCATCTGCT 59.023 52.381 0.00 0.00 43.70 4.24
845 846 2.028203 GGGGAGCTTATCTCATCTGCTC 60.028 54.545 0.00 0.00 46.43 4.26
846 847 2.899256 GGGAGCTTATCTCATCTGCTCT 59.101 50.000 12.06 0.00 46.39 4.09
847 848 3.056607 GGGAGCTTATCTCATCTGCTCTC 60.057 52.174 12.06 5.43 46.39 3.20
848 849 3.366273 GGAGCTTATCTCATCTGCTCTCG 60.366 52.174 12.06 0.00 46.39 4.04
849 850 3.221771 AGCTTATCTCATCTGCTCTCGT 58.778 45.455 0.00 0.00 0.00 4.18
850 851 3.253188 AGCTTATCTCATCTGCTCTCGTC 59.747 47.826 0.00 0.00 0.00 4.20
851 852 3.253188 GCTTATCTCATCTGCTCTCGTCT 59.747 47.826 0.00 0.00 0.00 4.18
852 853 4.613622 GCTTATCTCATCTGCTCTCGTCTC 60.614 50.000 0.00 0.00 0.00 3.36
853 854 1.294857 TCTCATCTGCTCTCGTCTCG 58.705 55.000 0.00 0.00 0.00 4.04
854 855 0.307453 CTCATCTGCTCTCGTCTCGG 59.693 60.000 0.00 0.00 0.00 4.63
855 856 1.098129 TCATCTGCTCTCGTCTCGGG 61.098 60.000 0.00 0.00 0.00 5.14
856 857 1.826054 ATCTGCTCTCGTCTCGGGG 60.826 63.158 0.00 0.00 0.00 5.73
857 858 2.272230 ATCTGCTCTCGTCTCGGGGA 62.272 60.000 0.00 0.00 0.00 4.81
858 859 2.438614 TGCTCTCGTCTCGGGGAG 60.439 66.667 0.00 0.00 33.35 4.30
859 860 3.213402 GCTCTCGTCTCGGGGAGG 61.213 72.222 11.84 0.00 31.94 4.30
860 861 2.517402 CTCTCGTCTCGGGGAGGG 60.517 72.222 0.00 0.00 0.00 4.30
861 862 3.013327 TCTCGTCTCGGGGAGGGA 61.013 66.667 0.00 0.00 0.00 4.20
862 863 2.044252 CTCGTCTCGGGGAGGGAA 60.044 66.667 0.00 0.00 0.00 3.97
863 864 1.455959 CTCGTCTCGGGGAGGGAAT 60.456 63.158 0.00 0.00 0.00 3.01
864 865 1.739338 CTCGTCTCGGGGAGGGAATG 61.739 65.000 0.00 0.00 0.00 2.67
865 866 2.797278 CGTCTCGGGGAGGGAATGG 61.797 68.421 0.00 0.00 0.00 3.16
866 867 2.768344 TCTCGGGGAGGGAATGGC 60.768 66.667 0.00 0.00 0.00 4.40
867 868 3.089874 CTCGGGGAGGGAATGGCA 61.090 66.667 0.00 0.00 0.00 4.92
868 869 3.089874 TCGGGGAGGGAATGGCAG 61.090 66.667 0.00 0.00 0.00 4.85
869 870 3.089874 CGGGGAGGGAATGGCAGA 61.090 66.667 0.00 0.00 0.00 4.26
870 871 2.922234 GGGGAGGGAATGGCAGAG 59.078 66.667 0.00 0.00 0.00 3.35
871 872 2.761465 GGGGAGGGAATGGCAGAGG 61.761 68.421 0.00 0.00 0.00 3.69
872 873 1.694169 GGGAGGGAATGGCAGAGGA 60.694 63.158 0.00 0.00 0.00 3.71
873 874 1.281925 GGGAGGGAATGGCAGAGGAA 61.282 60.000 0.00 0.00 0.00 3.36
874 875 0.106967 GGAGGGAATGGCAGAGGAAC 60.107 60.000 0.00 0.00 0.00 3.62
875 876 0.462759 GAGGGAATGGCAGAGGAACG 60.463 60.000 0.00 0.00 0.00 3.95
876 877 1.452108 GGGAATGGCAGAGGAACGG 60.452 63.158 0.00 0.00 0.00 4.44
877 878 1.452108 GGAATGGCAGAGGAACGGG 60.452 63.158 0.00 0.00 0.00 5.28
878 879 1.602237 GAATGGCAGAGGAACGGGA 59.398 57.895 0.00 0.00 0.00 5.14
879 880 0.181350 GAATGGCAGAGGAACGGGAT 59.819 55.000 0.00 0.00 0.00 3.85
880 881 0.625849 AATGGCAGAGGAACGGGATT 59.374 50.000 0.00 0.00 0.00 3.01
881 882 0.181350 ATGGCAGAGGAACGGGATTC 59.819 55.000 0.00 0.00 36.48 2.52
882 883 1.521681 GGCAGAGGAACGGGATTCG 60.522 63.158 0.00 0.00 45.88 3.34
883 884 1.521681 GCAGAGGAACGGGATTCGG 60.522 63.158 0.00 0.00 44.45 4.30
884 885 1.898154 CAGAGGAACGGGATTCGGT 59.102 57.895 0.00 0.00 44.24 4.69
885 886 0.249398 CAGAGGAACGGGATTCGGTT 59.751 55.000 0.00 0.00 39.92 4.44
886 887 1.479323 CAGAGGAACGGGATTCGGTTA 59.521 52.381 0.00 0.00 39.92 2.85
887 888 2.093869 CAGAGGAACGGGATTCGGTTAA 60.094 50.000 0.00 0.00 39.92 2.01
888 889 2.167900 AGAGGAACGGGATTCGGTTAAG 59.832 50.000 0.00 0.00 39.92 1.85
889 890 1.904537 AGGAACGGGATTCGGTTAAGT 59.095 47.619 0.00 0.00 39.92 2.24
890 891 2.004733 GGAACGGGATTCGGTTAAGTG 58.995 52.381 0.00 0.00 39.92 3.16
891 892 2.613725 GGAACGGGATTCGGTTAAGTGT 60.614 50.000 0.00 0.00 39.92 3.55
892 893 2.845363 ACGGGATTCGGTTAAGTGTT 57.155 45.000 0.00 0.00 44.45 3.32
893 894 2.419667 ACGGGATTCGGTTAAGTGTTG 58.580 47.619 0.00 0.00 44.45 3.33
946 947 5.957842 TTAAAGTCGAAGCATCCAATTGT 57.042 34.783 4.43 0.00 0.00 2.71
1053 1054 3.512033 ACACGATTTCTGACTAGGCTC 57.488 47.619 0.00 0.00 0.00 4.70
1353 1398 3.578716 GGAGCAGCACTGGGTAAGATATA 59.421 47.826 0.00 0.00 0.00 0.86
1401 1458 5.617252 AGGGTTCAAGTGTTCTTCGATTTA 58.383 37.500 0.00 0.00 0.00 1.40
1655 1732 7.275999 GGTAGTTAGTCTGCAGATTCAGTTAAC 59.724 40.741 21.47 15.54 36.57 2.01
1663 1740 7.118390 GTCTGCAGATTCAGTTAACTGTGTTAT 59.882 37.037 29.83 19.86 44.12 1.89
1894 2027 7.097192 GGACTGTCTGTAGTTGATGAAACATA 58.903 38.462 7.85 0.00 41.61 2.29
2193 2336 3.087031 AGAATTGTGGCAGAGTGATTGG 58.913 45.455 0.00 0.00 0.00 3.16
2399 2542 3.069443 GCTAGCTATCAGCAAGGAGAAGT 59.931 47.826 7.70 0.00 45.56 3.01
2449 2592 0.837691 TGGAGAAGCTGGCTCAGGAA 60.838 55.000 16.13 0.00 34.07 3.36
2557 2813 3.238597 GGACTGGCTGATAGAGGAGAAT 58.761 50.000 0.00 0.00 0.00 2.40
2764 3056 9.387397 TCCCCTAGTTATGTAATGATTGTGATA 57.613 33.333 0.00 0.00 0.00 2.15
2827 3119 5.611796 TGTAATGACTAGCTGCAAAACTG 57.388 39.130 1.02 0.00 0.00 3.16
3232 3538 4.907269 TCCTTGCCCAGTAGATGATATCAA 59.093 41.667 9.99 0.00 0.00 2.57
3289 3595 2.146342 CGAACTGCTCCATGTCTTTGT 58.854 47.619 0.00 0.00 0.00 2.83
3343 3649 2.044492 TGCCTTCTCTCCCTCCTTCTTA 59.956 50.000 0.00 0.00 0.00 2.10
3512 3906 7.450903 GTGCCTTATATAGTAGAAATGGTGGT 58.549 38.462 0.00 0.00 0.00 4.16
3591 3985 3.953542 AGTCCAACTTTCCTTGTCCTT 57.046 42.857 0.00 0.00 0.00 3.36
3646 4040 8.214364 TGAATTTTAACCCAAGCCAACTAAAAT 58.786 29.630 0.00 0.00 32.88 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 229 3.122250 CTTCGACTCCTACGGCGGG 62.122 68.421 13.24 3.35 0.00 6.13
229 230 1.091771 TACTTCGACTCCTACGGCGG 61.092 60.000 13.24 0.00 0.00 6.13
230 231 0.304098 CTACTTCGACTCCTACGGCG 59.696 60.000 4.80 4.80 0.00 6.46
231 232 1.063764 CACTACTTCGACTCCTACGGC 59.936 57.143 0.00 0.00 0.00 5.68
232 233 2.354259 ACACTACTTCGACTCCTACGG 58.646 52.381 0.00 0.00 0.00 4.02
233 234 3.555139 CCTACACTACTTCGACTCCTACG 59.445 52.174 0.00 0.00 0.00 3.51
234 235 4.764172 TCCTACACTACTTCGACTCCTAC 58.236 47.826 0.00 0.00 0.00 3.18
235 236 4.713814 TCTCCTACACTACTTCGACTCCTA 59.286 45.833 0.00 0.00 0.00 2.94
236 237 3.518705 TCTCCTACACTACTTCGACTCCT 59.481 47.826 0.00 0.00 0.00 3.69
237 238 3.871485 TCTCCTACACTACTTCGACTCC 58.129 50.000 0.00 0.00 0.00 3.85
238 239 4.209703 CGATCTCCTACACTACTTCGACTC 59.790 50.000 0.00 0.00 0.00 3.36
239 240 4.121317 CGATCTCCTACACTACTTCGACT 58.879 47.826 0.00 0.00 0.00 4.18
240 241 3.870419 ACGATCTCCTACACTACTTCGAC 59.130 47.826 0.00 0.00 0.00 4.20
241 242 4.118410 GACGATCTCCTACACTACTTCGA 58.882 47.826 0.00 0.00 0.00 3.71
242 243 3.060406 CGACGATCTCCTACACTACTTCG 60.060 52.174 0.00 0.00 0.00 3.79
243 244 3.248125 CCGACGATCTCCTACACTACTTC 59.752 52.174 0.00 0.00 0.00 3.01
244 245 3.204526 CCGACGATCTCCTACACTACTT 58.795 50.000 0.00 0.00 0.00 2.24
245 246 2.485124 CCCGACGATCTCCTACACTACT 60.485 54.545 0.00 0.00 0.00 2.57
246 247 1.872313 CCCGACGATCTCCTACACTAC 59.128 57.143 0.00 0.00 0.00 2.73
247 248 1.202734 CCCCGACGATCTCCTACACTA 60.203 57.143 0.00 0.00 0.00 2.74
248 249 0.465824 CCCCGACGATCTCCTACACT 60.466 60.000 0.00 0.00 0.00 3.55
249 250 0.465097 TCCCCGACGATCTCCTACAC 60.465 60.000 0.00 0.00 0.00 2.90
250 251 0.256752 TTCCCCGACGATCTCCTACA 59.743 55.000 0.00 0.00 0.00 2.74
251 252 0.953003 CTTCCCCGACGATCTCCTAC 59.047 60.000 0.00 0.00 0.00 3.18
252 253 0.549950 ACTTCCCCGACGATCTCCTA 59.450 55.000 0.00 0.00 0.00 2.94
253 254 0.752376 GACTTCCCCGACGATCTCCT 60.752 60.000 0.00 0.00 0.00 3.69
254 255 1.734748 GACTTCCCCGACGATCTCC 59.265 63.158 0.00 0.00 0.00 3.71
255 256 1.355916 CGACTTCCCCGACGATCTC 59.644 63.158 0.00 0.00 0.00 2.75
256 257 1.375098 GACGACTTCCCCGACGATCT 61.375 60.000 0.00 0.00 0.00 2.75
257 258 1.063811 GACGACTTCCCCGACGATC 59.936 63.158 0.00 0.00 0.00 3.69
258 259 2.758089 CGACGACTTCCCCGACGAT 61.758 63.158 0.00 0.00 44.84 3.73
259 260 3.425713 CGACGACTTCCCCGACGA 61.426 66.667 0.00 0.00 44.84 4.20
260 261 4.471726 CCGACGACTTCCCCGACG 62.472 72.222 0.00 0.00 42.63 5.12
261 262 3.048941 CTCCGACGACTTCCCCGAC 62.049 68.421 0.00 0.00 0.00 4.79
262 263 2.547640 ATCTCCGACGACTTCCCCGA 62.548 60.000 0.00 0.00 0.00 5.14
263 264 2.119655 ATCTCCGACGACTTCCCCG 61.120 63.158 0.00 0.00 0.00 5.73
264 265 1.035932 TCATCTCCGACGACTTCCCC 61.036 60.000 0.00 0.00 0.00 4.81
265 266 0.382515 CTCATCTCCGACGACTTCCC 59.617 60.000 0.00 0.00 0.00 3.97
266 267 0.382515 CCTCATCTCCGACGACTTCC 59.617 60.000 0.00 0.00 0.00 3.46
267 268 0.382515 CCCTCATCTCCGACGACTTC 59.617 60.000 0.00 0.00 0.00 3.01
268 269 0.034380 TCCCTCATCTCCGACGACTT 60.034 55.000 0.00 0.00 0.00 3.01
269 270 0.464735 CTCCCTCATCTCCGACGACT 60.465 60.000 0.00 0.00 0.00 4.18
270 271 0.748729 ACTCCCTCATCTCCGACGAC 60.749 60.000 0.00 0.00 0.00 4.34
271 272 0.464013 GACTCCCTCATCTCCGACGA 60.464 60.000 0.00 0.00 0.00 4.20
272 273 1.777030 CGACTCCCTCATCTCCGACG 61.777 65.000 0.00 0.00 0.00 5.12
273 274 2.026522 CGACTCCCTCATCTCCGAC 58.973 63.158 0.00 0.00 0.00 4.79
274 275 1.824329 GCGACTCCCTCATCTCCGA 60.824 63.158 0.00 0.00 0.00 4.55
275 276 2.725008 GCGACTCCCTCATCTCCG 59.275 66.667 0.00 0.00 0.00 4.63
276 277 2.725008 CGCGACTCCCTCATCTCC 59.275 66.667 0.00 0.00 0.00 3.71
277 278 1.824329 TCCGCGACTCCCTCATCTC 60.824 63.158 8.23 0.00 0.00 2.75
278 279 2.122167 GTCCGCGACTCCCTCATCT 61.122 63.158 8.23 0.00 0.00 2.90
279 280 2.413765 GTCCGCGACTCCCTCATC 59.586 66.667 8.23 0.00 0.00 2.92
280 281 3.148279 GGTCCGCGACTCCCTCAT 61.148 66.667 8.23 0.00 32.47 2.90
281 282 4.361971 AGGTCCGCGACTCCCTCA 62.362 66.667 8.23 0.00 32.47 3.86
282 283 3.827898 CAGGTCCGCGACTCCCTC 61.828 72.222 8.23 0.00 32.47 4.30
286 287 3.827898 CTCCCAGGTCCGCGACTC 61.828 72.222 8.23 0.00 32.47 3.36
294 295 4.131088 GTCGTCGCCTCCCAGGTC 62.131 72.222 0.00 0.00 37.80 3.85
297 298 4.180946 CTCGTCGTCGCCTCCCAG 62.181 72.222 0.00 0.00 36.96 4.45
305 306 2.732094 AAAACCGCCTCGTCGTCG 60.732 61.111 0.00 0.00 38.55 5.12
306 307 2.851104 CAAAACCGCCTCGTCGTC 59.149 61.111 0.00 0.00 0.00 4.20
307 308 3.343421 GCAAAACCGCCTCGTCGT 61.343 61.111 0.00 0.00 0.00 4.34
308 309 3.011760 GAGCAAAACCGCCTCGTCG 62.012 63.158 0.00 0.00 0.00 5.12
309 310 2.861006 GAGCAAAACCGCCTCGTC 59.139 61.111 0.00 0.00 0.00 4.20
310 311 3.041940 CGAGCAAAACCGCCTCGT 61.042 61.111 0.00 0.00 31.96 4.18
311 312 2.736995 TCGAGCAAAACCGCCTCG 60.737 61.111 3.13 3.13 35.37 4.63
312 313 2.861006 GTCGAGCAAAACCGCCTC 59.139 61.111 0.00 0.00 0.00 4.70
313 314 3.041940 CGTCGAGCAAAACCGCCT 61.042 61.111 0.00 0.00 0.00 5.52
340 341 4.227134 CATCGAGGAGGCCACCGG 62.227 72.222 14.10 10.12 34.73 5.28
341 342 4.227134 CCATCGAGGAGGCCACCG 62.227 72.222 14.10 6.66 41.22 4.94
342 343 2.764128 TCCATCGAGGAGGCCACC 60.764 66.667 11.96 11.96 43.07 4.61
354 355 3.406595 CTTCACCCCGGCCTCCATC 62.407 68.421 0.00 0.00 0.00 3.51
355 356 3.411517 CTTCACCCCGGCCTCCAT 61.412 66.667 0.00 0.00 0.00 3.41
375 376 1.891919 CTCCTCTCTCTCCCGCGAG 60.892 68.421 8.23 0.00 37.48 5.03
376 377 1.701031 ATCTCCTCTCTCTCCCGCGA 61.701 60.000 8.23 0.00 0.00 5.87
377 378 1.228124 ATCTCCTCTCTCTCCCGCG 60.228 63.158 0.00 0.00 0.00 6.46
378 379 0.179004 TCATCTCCTCTCTCTCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
379 380 1.545428 CCTCATCTCCTCTCTCTCCCG 60.545 61.905 0.00 0.00 0.00 5.14
380 381 1.203050 CCCTCATCTCCTCTCTCTCCC 60.203 61.905 0.00 0.00 0.00 4.30
381 382 1.203050 CCCCTCATCTCCTCTCTCTCC 60.203 61.905 0.00 0.00 0.00 3.71
382 383 1.823250 GCCCCTCATCTCCTCTCTCTC 60.823 61.905 0.00 0.00 0.00 3.20
383 384 0.188342 GCCCCTCATCTCCTCTCTCT 59.812 60.000 0.00 0.00 0.00 3.10
384 385 1.178534 CGCCCCTCATCTCCTCTCTC 61.179 65.000 0.00 0.00 0.00 3.20
385 386 1.152567 CGCCCCTCATCTCCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
386 387 2.866726 GCGCCCCTCATCTCCTCTC 61.867 68.421 0.00 0.00 0.00 3.20
387 388 2.841988 GCGCCCCTCATCTCCTCT 60.842 66.667 0.00 0.00 0.00 3.69
388 389 4.292178 CGCGCCCCTCATCTCCTC 62.292 72.222 0.00 0.00 0.00 3.71
389 390 3.733507 TACGCGCCCCTCATCTCCT 62.734 63.158 5.73 0.00 0.00 3.69
390 391 3.224324 TACGCGCCCCTCATCTCC 61.224 66.667 5.73 0.00 0.00 3.71
391 392 2.027751 GTACGCGCCCCTCATCTC 59.972 66.667 5.73 0.00 0.00 2.75
392 393 2.442272 AGTACGCGCCCCTCATCT 60.442 61.111 5.73 0.00 0.00 2.90
393 394 2.027751 GAGTACGCGCCCCTCATC 59.972 66.667 5.73 0.00 0.00 2.92
394 395 3.900892 CGAGTACGCGCCCCTCAT 61.901 66.667 5.73 0.00 0.00 2.90
395 396 3.974835 TACGAGTACGCGCCCCTCA 62.975 63.158 19.25 0.00 43.96 3.86
396 397 3.204827 TACGAGTACGCGCCCCTC 61.205 66.667 19.25 8.18 43.96 4.30
397 398 3.512516 GTACGAGTACGCGCCCCT 61.513 66.667 19.25 0.00 43.96 4.79
398 399 4.559229 GGTACGAGTACGCGCCCC 62.559 72.222 19.25 14.54 43.96 5.80
399 400 3.746409 CTGGTACGAGTACGCGCCC 62.746 68.421 19.25 18.27 43.96 6.13
400 401 2.277756 CTGGTACGAGTACGCGCC 60.278 66.667 19.25 13.23 43.96 6.53
401 402 2.948134 GCTGGTACGAGTACGCGC 60.948 66.667 19.25 0.00 43.96 6.86
402 403 2.646862 CGCTGGTACGAGTACGCG 60.647 66.667 17.76 17.76 43.96 6.01
403 404 2.277756 CCGCTGGTACGAGTACGC 60.278 66.667 6.75 5.51 43.96 4.42
404 405 2.277756 GCCGCTGGTACGAGTACG 60.278 66.667 6.75 2.67 45.75 3.67
405 406 2.103736 GGCCGCTGGTACGAGTAC 59.896 66.667 6.75 4.90 34.06 2.73
406 407 3.142838 GGGCCGCTGGTACGAGTA 61.143 66.667 6.75 0.00 34.06 2.59
408 409 3.849951 ATGGGCCGCTGGTACGAG 61.850 66.667 0.00 0.00 34.06 4.18
409 410 4.155733 CATGGGCCGCTGGTACGA 62.156 66.667 0.00 0.00 34.06 3.43
443 444 3.691744 GACCTCACTGAGCGCCTCG 62.692 68.421 2.29 0.00 32.35 4.63
444 445 2.183046 GACCTCACTGAGCGCCTC 59.817 66.667 2.29 1.22 0.00 4.70
445 446 3.753434 CGACCTCACTGAGCGCCT 61.753 66.667 2.29 0.00 0.00 5.52
446 447 3.691744 CTCGACCTCACTGAGCGCC 62.692 68.421 2.29 0.00 0.00 6.53
447 448 2.202544 CTCGACCTCACTGAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
448 449 1.867919 AACCTCGACCTCACTGAGCG 61.868 60.000 0.00 0.46 0.00 5.03
449 450 0.389166 CAACCTCGACCTCACTGAGC 60.389 60.000 0.00 0.00 0.00 4.26
450 451 0.389166 GCAACCTCGACCTCACTGAG 60.389 60.000 0.00 0.00 0.00 3.35
451 452 1.666011 GCAACCTCGACCTCACTGA 59.334 57.895 0.00 0.00 0.00 3.41
452 453 1.734477 CGCAACCTCGACCTCACTG 60.734 63.158 0.00 0.00 0.00 3.66
453 454 2.651361 CGCAACCTCGACCTCACT 59.349 61.111 0.00 0.00 0.00 3.41
454 455 1.870055 TACCGCAACCTCGACCTCAC 61.870 60.000 0.00 0.00 0.00 3.51
455 456 1.180456 TTACCGCAACCTCGACCTCA 61.180 55.000 0.00 0.00 0.00 3.86
456 457 0.458025 CTTACCGCAACCTCGACCTC 60.458 60.000 0.00 0.00 0.00 3.85
457 458 1.183676 ACTTACCGCAACCTCGACCT 61.184 55.000 0.00 0.00 0.00 3.85
458 459 0.735287 GACTTACCGCAACCTCGACC 60.735 60.000 0.00 0.00 0.00 4.79
459 460 0.243095 AGACTTACCGCAACCTCGAC 59.757 55.000 0.00 0.00 0.00 4.20
460 461 0.524862 GAGACTTACCGCAACCTCGA 59.475 55.000 0.00 0.00 0.00 4.04
461 462 0.797249 CGAGACTTACCGCAACCTCG 60.797 60.000 0.00 0.00 37.72 4.63
462 463 0.458025 CCGAGACTTACCGCAACCTC 60.458 60.000 0.00 0.00 0.00 3.85
463 464 1.590147 CCGAGACTTACCGCAACCT 59.410 57.895 0.00 0.00 0.00 3.50
464 465 1.447314 CCCGAGACTTACCGCAACC 60.447 63.158 0.00 0.00 0.00 3.77
465 466 2.098831 GCCCGAGACTTACCGCAAC 61.099 63.158 0.00 0.00 0.00 4.17
466 467 2.263540 GCCCGAGACTTACCGCAA 59.736 61.111 0.00 0.00 0.00 4.85
467 468 2.992689 TGCCCGAGACTTACCGCA 60.993 61.111 0.00 0.00 0.00 5.69
468 469 2.202756 CTGCCCGAGACTTACCGC 60.203 66.667 0.00 0.00 0.00 5.68
469 470 2.494918 CCTGCCCGAGACTTACCG 59.505 66.667 0.00 0.00 0.00 4.02
470 471 2.732619 CCCCTGCCCGAGACTTACC 61.733 68.421 0.00 0.00 0.00 2.85
471 472 2.732619 CCCCCTGCCCGAGACTTAC 61.733 68.421 0.00 0.00 0.00 2.34
472 473 2.365105 CCCCCTGCCCGAGACTTA 60.365 66.667 0.00 0.00 0.00 2.24
473 474 2.758852 TAACCCCCTGCCCGAGACTT 62.759 60.000 0.00 0.00 0.00 3.01
474 475 3.248248 TAACCCCCTGCCCGAGACT 62.248 63.158 0.00 0.00 0.00 3.24
475 476 2.686106 TAACCCCCTGCCCGAGAC 60.686 66.667 0.00 0.00 0.00 3.36
476 477 2.365105 CTAACCCCCTGCCCGAGA 60.365 66.667 0.00 0.00 0.00 4.04
477 478 3.480133 CCTAACCCCCTGCCCGAG 61.480 72.222 0.00 0.00 0.00 4.63
489 490 4.397832 TTCCACCCGCCGCCTAAC 62.398 66.667 0.00 0.00 0.00 2.34
490 491 4.090588 CTTCCACCCGCCGCCTAA 62.091 66.667 0.00 0.00 0.00 2.69
498 499 3.006728 TACCAGCCCTTCCACCCG 61.007 66.667 0.00 0.00 0.00 5.28
499 500 2.198304 CTGTACCAGCCCTTCCACCC 62.198 65.000 0.00 0.00 0.00 4.61
500 501 1.299976 CTGTACCAGCCCTTCCACC 59.700 63.158 0.00 0.00 0.00 4.61
510 511 4.473520 CCGGGCCAGCTGTACCAG 62.474 72.222 21.04 17.46 34.12 4.00
547 548 4.424711 TGGAATGCTCCCCCGCAC 62.425 66.667 0.00 0.00 43.61 5.34
548 549 4.424711 GTGGAATGCTCCCCCGCA 62.425 66.667 0.00 0.00 45.10 5.69
603 604 4.247380 CTCATCCTCCCCGGCAGC 62.247 72.222 0.00 0.00 0.00 5.25
604 605 4.247380 GCTCATCCTCCCCGGCAG 62.247 72.222 0.00 0.00 0.00 4.85
605 606 4.804420 AGCTCATCCTCCCCGGCA 62.804 66.667 0.00 0.00 0.00 5.69
606 607 3.483869 AAGCTCATCCTCCCCGGC 61.484 66.667 0.00 0.00 0.00 6.13
607 608 2.507944 CAAGCTCATCCTCCCCGG 59.492 66.667 0.00 0.00 0.00 5.73
608 609 2.203126 GCAAGCTCATCCTCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
609 610 2.194326 GGCAAGCTCATCCTCCCC 59.806 66.667 0.00 0.00 0.00 4.81
610 611 2.203126 CGGCAAGCTCATCCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
611 612 2.899339 GCGGCAAGCTCATCCTCC 60.899 66.667 0.00 0.00 44.04 4.30
661 662 4.227134 CGCACTCATCCTCCCCGG 62.227 72.222 0.00 0.00 0.00 5.73
662 663 4.227134 CCGCACTCATCCTCCCCG 62.227 72.222 0.00 0.00 0.00 5.73
663 664 4.554036 GCCGCACTCATCCTCCCC 62.554 72.222 0.00 0.00 0.00 4.81
664 665 4.899239 CGCCGCACTCATCCTCCC 62.899 72.222 0.00 0.00 0.00 4.30
665 666 3.157217 ATCGCCGCACTCATCCTCC 62.157 63.158 0.00 0.00 0.00 4.30
666 667 1.953138 CATCGCCGCACTCATCCTC 60.953 63.158 0.00 0.00 0.00 3.71
667 668 2.107750 CATCGCCGCACTCATCCT 59.892 61.111 0.00 0.00 0.00 3.24
668 669 2.969238 CCATCGCCGCACTCATCC 60.969 66.667 0.00 0.00 0.00 3.51
669 670 2.202932 ACCATCGCCGCACTCATC 60.203 61.111 0.00 0.00 0.00 2.92
670 671 1.955495 TACACCATCGCCGCACTCAT 61.955 55.000 0.00 0.00 0.00 2.90
671 672 2.557059 CTACACCATCGCCGCACTCA 62.557 60.000 0.00 0.00 0.00 3.41
672 673 1.878522 CTACACCATCGCCGCACTC 60.879 63.158 0.00 0.00 0.00 3.51
673 674 2.184322 CTACACCATCGCCGCACT 59.816 61.111 0.00 0.00 0.00 4.40
674 675 2.890474 CCTACACCATCGCCGCAC 60.890 66.667 0.00 0.00 0.00 5.34
675 676 3.387091 ACCTACACCATCGCCGCA 61.387 61.111 0.00 0.00 0.00 5.69
676 677 2.890474 CACCTACACCATCGCCGC 60.890 66.667 0.00 0.00 0.00 6.53
677 678 2.890474 GCACCTACACCATCGCCG 60.890 66.667 0.00 0.00 0.00 6.46
678 679 1.153168 ATGCACCTACACCATCGCC 60.153 57.895 0.00 0.00 0.00 5.54
679 680 2.311294 GATGCACCTACACCATCGC 58.689 57.895 0.00 0.00 0.00 4.58
681 682 1.571919 GTCGATGCACCTACACCATC 58.428 55.000 0.00 0.00 33.71 3.51
682 683 0.179111 CGTCGATGCACCTACACCAT 60.179 55.000 0.00 0.00 0.00 3.55
683 684 1.214325 CGTCGATGCACCTACACCA 59.786 57.895 0.00 0.00 0.00 4.17
684 685 2.165301 GCGTCGATGCACCTACACC 61.165 63.158 24.45 0.00 34.15 4.16
685 686 2.165301 GGCGTCGATGCACCTACAC 61.165 63.158 29.46 7.93 36.28 2.90
686 687 2.183300 GGCGTCGATGCACCTACA 59.817 61.111 29.46 0.00 36.28 2.74
687 688 2.954868 CGGCGTCGATGCACCTAC 60.955 66.667 29.46 11.87 39.00 3.18
688 689 4.201679 CCGGCGTCGATGCACCTA 62.202 66.667 29.46 0.00 39.00 3.08
708 709 4.394712 CTCTCCACCGCCCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
715 716 4.785453 CAAGCCCCTCTCCACCGC 62.785 72.222 0.00 0.00 0.00 5.68
716 717 4.785453 GCAAGCCCCTCTCCACCG 62.785 72.222 0.00 0.00 0.00 4.94
717 718 4.785453 CGCAAGCCCCTCTCCACC 62.785 72.222 0.00 0.00 0.00 4.61
718 719 4.785453 CCGCAAGCCCCTCTCCAC 62.785 72.222 0.00 0.00 0.00 4.02
720 721 4.785453 CACCGCAAGCCCCTCTCC 62.785 72.222 0.00 0.00 0.00 3.71
721 722 4.785453 CCACCGCAAGCCCCTCTC 62.785 72.222 0.00 0.00 0.00 3.20
763 764 4.715130 CTCCGTCTCCCACCCCCA 62.715 72.222 0.00 0.00 0.00 4.96
764 765 4.393778 TCTCCGTCTCCCACCCCC 62.394 72.222 0.00 0.00 0.00 5.40
765 766 2.760385 CTCTCCGTCTCCCACCCC 60.760 72.222 0.00 0.00 0.00 4.95
766 767 3.462678 GCTCTCCGTCTCCCACCC 61.463 72.222 0.00 0.00 0.00 4.61
767 768 2.060980 ATGCTCTCCGTCTCCCACC 61.061 63.158 0.00 0.00 0.00 4.61
768 769 1.142748 CATGCTCTCCGTCTCCCAC 59.857 63.158 0.00 0.00 0.00 4.61
769 770 2.060383 CCATGCTCTCCGTCTCCCA 61.060 63.158 0.00 0.00 0.00 4.37
770 771 2.060980 ACCATGCTCTCCGTCTCCC 61.061 63.158 0.00 0.00 0.00 4.30
771 772 1.142748 CACCATGCTCTCCGTCTCC 59.857 63.158 0.00 0.00 0.00 3.71
772 773 1.142748 CCACCATGCTCTCCGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
773 774 1.610673 ACCACCATGCTCTCCGTCT 60.611 57.895 0.00 0.00 0.00 4.18
774 775 1.448540 CACCACCATGCTCTCCGTC 60.449 63.158 0.00 0.00 0.00 4.79
775 776 1.267574 ATCACCACCATGCTCTCCGT 61.268 55.000 0.00 0.00 0.00 4.69
776 777 0.752658 TATCACCACCATGCTCTCCG 59.247 55.000 0.00 0.00 0.00 4.63
777 778 2.486191 CCTTATCACCACCATGCTCTCC 60.486 54.545 0.00 0.00 0.00 3.71
778 779 2.171448 ACCTTATCACCACCATGCTCTC 59.829 50.000 0.00 0.00 0.00 3.20
779 780 2.092753 CACCTTATCACCACCATGCTCT 60.093 50.000 0.00 0.00 0.00 4.09
780 781 2.092968 TCACCTTATCACCACCATGCTC 60.093 50.000 0.00 0.00 0.00 4.26
781 782 1.915489 TCACCTTATCACCACCATGCT 59.085 47.619 0.00 0.00 0.00 3.79
782 783 2.418368 TCACCTTATCACCACCATGC 57.582 50.000 0.00 0.00 0.00 4.06
783 784 3.282021 CCTTCACCTTATCACCACCATG 58.718 50.000 0.00 0.00 0.00 3.66
784 785 2.242196 CCCTTCACCTTATCACCACCAT 59.758 50.000 0.00 0.00 0.00 3.55
785 786 1.633432 CCCTTCACCTTATCACCACCA 59.367 52.381 0.00 0.00 0.00 4.17
786 787 1.913419 TCCCTTCACCTTATCACCACC 59.087 52.381 0.00 0.00 0.00 4.61
787 788 2.092914 CCTCCCTTCACCTTATCACCAC 60.093 54.545 0.00 0.00 0.00 4.16
788 789 2.196595 CCTCCCTTCACCTTATCACCA 58.803 52.381 0.00 0.00 0.00 4.17
789 790 2.436173 CTCCTCCCTTCACCTTATCACC 59.564 54.545 0.00 0.00 0.00 4.02
790 791 2.158885 GCTCCTCCCTTCACCTTATCAC 60.159 54.545 0.00 0.00 0.00 3.06
791 792 2.119495 GCTCCTCCCTTCACCTTATCA 58.881 52.381 0.00 0.00 0.00 2.15
792 793 1.069358 CGCTCCTCCCTTCACCTTATC 59.931 57.143 0.00 0.00 0.00 1.75
793 794 1.123928 CGCTCCTCCCTTCACCTTAT 58.876 55.000 0.00 0.00 0.00 1.73
794 795 1.614241 GCGCTCCTCCCTTCACCTTA 61.614 60.000 0.00 0.00 0.00 2.69
795 796 2.960688 GCGCTCCTCCCTTCACCTT 61.961 63.158 0.00 0.00 0.00 3.50
796 797 3.394836 GCGCTCCTCCCTTCACCT 61.395 66.667 0.00 0.00 0.00 4.00
797 798 3.672295 CTGCGCTCCTCCCTTCACC 62.672 68.421 9.73 0.00 0.00 4.02
798 799 2.125350 CTGCGCTCCTCCCTTCAC 60.125 66.667 9.73 0.00 0.00 3.18
799 800 2.283894 TCTGCGCTCCTCCCTTCA 60.284 61.111 9.73 0.00 0.00 3.02
800 801 2.498726 CTCTGCGCTCCTCCCTTC 59.501 66.667 9.73 0.00 0.00 3.46
801 802 3.080121 CCTCTGCGCTCCTCCCTT 61.080 66.667 9.73 0.00 0.00 3.95
802 803 3.608759 TTCCTCTGCGCTCCTCCCT 62.609 63.158 9.73 0.00 0.00 4.20
803 804 3.077556 TTCCTCTGCGCTCCTCCC 61.078 66.667 9.73 0.00 0.00 4.30
804 805 2.498726 CTTCCTCTGCGCTCCTCC 59.501 66.667 9.73 0.00 0.00 4.30
805 806 2.202864 GCTTCCTCTGCGCTCCTC 60.203 66.667 9.73 0.00 0.00 3.71
806 807 2.999648 TGCTTCCTCTGCGCTCCT 61.000 61.111 9.73 0.00 0.00 3.69
807 808 2.511145 CTGCTTCCTCTGCGCTCC 60.511 66.667 9.73 0.00 0.00 4.70
808 809 2.511145 CCTGCTTCCTCTGCGCTC 60.511 66.667 9.73 0.00 0.00 5.03
809 810 4.093291 CCCTGCTTCCTCTGCGCT 62.093 66.667 9.73 0.00 0.00 5.92
811 812 3.382803 CTCCCCTGCTTCCTCTGCG 62.383 68.421 0.00 0.00 0.00 5.18
812 813 2.588989 CTCCCCTGCTTCCTCTGC 59.411 66.667 0.00 0.00 0.00 4.26
813 814 1.994507 AGCTCCCCTGCTTCCTCTG 60.995 63.158 0.00 0.00 40.93 3.35
814 815 2.453996 AGCTCCCCTGCTTCCTCT 59.546 61.111 0.00 0.00 40.93 3.69
820 821 1.977129 GATGAGATAAGCTCCCCTGCT 59.023 52.381 0.00 0.00 46.40 4.24
821 822 1.977129 AGATGAGATAAGCTCCCCTGC 59.023 52.381 0.00 0.00 43.26 4.85
822 823 2.289569 GCAGATGAGATAAGCTCCCCTG 60.290 54.545 0.00 0.00 43.26 4.45
823 824 1.977129 GCAGATGAGATAAGCTCCCCT 59.023 52.381 0.00 0.00 43.26 4.79
824 825 1.977129 AGCAGATGAGATAAGCTCCCC 59.023 52.381 0.00 0.00 43.26 4.81
825 826 3.317603 GAGCAGATGAGATAAGCTCCC 57.682 52.381 0.00 0.00 44.37 4.30
828 829 3.221771 ACGAGAGCAGATGAGATAAGCT 58.778 45.455 0.00 0.00 38.43 3.74
829 830 3.253188 AGACGAGAGCAGATGAGATAAGC 59.747 47.826 0.00 0.00 0.00 3.09
830 831 4.377328 CGAGACGAGAGCAGATGAGATAAG 60.377 50.000 0.00 0.00 0.00 1.73
831 832 3.496507 CGAGACGAGAGCAGATGAGATAA 59.503 47.826 0.00 0.00 0.00 1.75
832 833 3.063485 CGAGACGAGAGCAGATGAGATA 58.937 50.000 0.00 0.00 0.00 1.98
833 834 1.872952 CGAGACGAGAGCAGATGAGAT 59.127 52.381 0.00 0.00 0.00 2.75
834 835 1.294857 CGAGACGAGAGCAGATGAGA 58.705 55.000 0.00 0.00 0.00 3.27
835 836 0.307453 CCGAGACGAGAGCAGATGAG 59.693 60.000 0.00 0.00 0.00 2.90
836 837 1.098129 CCCGAGACGAGAGCAGATGA 61.098 60.000 0.00 0.00 0.00 2.92
837 838 1.358402 CCCGAGACGAGAGCAGATG 59.642 63.158 0.00 0.00 0.00 2.90
838 839 1.826054 CCCCGAGACGAGAGCAGAT 60.826 63.158 0.00 0.00 0.00 2.90
839 840 2.438614 CCCCGAGACGAGAGCAGA 60.439 66.667 0.00 0.00 0.00 4.26
840 841 2.438614 TCCCCGAGACGAGAGCAG 60.439 66.667 0.00 0.00 0.00 4.24
841 842 2.438614 CTCCCCGAGACGAGAGCA 60.439 66.667 0.00 0.00 0.00 4.26
842 843 3.213402 CCTCCCCGAGACGAGAGC 61.213 72.222 0.00 0.00 0.00 4.09
843 844 2.517402 CCCTCCCCGAGACGAGAG 60.517 72.222 0.00 0.00 0.00 3.20
844 845 1.934459 ATTCCCTCCCCGAGACGAGA 61.934 60.000 0.00 0.00 0.00 4.04
845 846 1.455959 ATTCCCTCCCCGAGACGAG 60.456 63.158 0.00 0.00 0.00 4.18
846 847 1.756950 CATTCCCTCCCCGAGACGA 60.757 63.158 0.00 0.00 0.00 4.20
847 848 2.797278 CCATTCCCTCCCCGAGACG 61.797 68.421 0.00 0.00 0.00 4.18
848 849 3.108288 GCCATTCCCTCCCCGAGAC 62.108 68.421 0.00 0.00 0.00 3.36
849 850 2.768344 GCCATTCCCTCCCCGAGA 60.768 66.667 0.00 0.00 0.00 4.04
850 851 3.089874 TGCCATTCCCTCCCCGAG 61.090 66.667 0.00 0.00 0.00 4.63
851 852 3.089874 CTGCCATTCCCTCCCCGA 61.090 66.667 0.00 0.00 0.00 5.14
852 853 3.089874 TCTGCCATTCCCTCCCCG 61.090 66.667 0.00 0.00 0.00 5.73
853 854 2.761465 CCTCTGCCATTCCCTCCCC 61.761 68.421 0.00 0.00 0.00 4.81
854 855 1.281925 TTCCTCTGCCATTCCCTCCC 61.282 60.000 0.00 0.00 0.00 4.30
855 856 0.106967 GTTCCTCTGCCATTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
856 857 0.462759 CGTTCCTCTGCCATTCCCTC 60.463 60.000 0.00 0.00 0.00 4.30
857 858 1.604378 CGTTCCTCTGCCATTCCCT 59.396 57.895 0.00 0.00 0.00 4.20
858 859 1.452108 CCGTTCCTCTGCCATTCCC 60.452 63.158 0.00 0.00 0.00 3.97
859 860 1.452108 CCCGTTCCTCTGCCATTCC 60.452 63.158 0.00 0.00 0.00 3.01
860 861 0.181350 ATCCCGTTCCTCTGCCATTC 59.819 55.000 0.00 0.00 0.00 2.67
861 862 0.625849 AATCCCGTTCCTCTGCCATT 59.374 50.000 0.00 0.00 0.00 3.16
862 863 0.181350 GAATCCCGTTCCTCTGCCAT 59.819 55.000 0.00 0.00 0.00 4.40
863 864 1.602237 GAATCCCGTTCCTCTGCCA 59.398 57.895 0.00 0.00 0.00 4.92
864 865 1.521681 CGAATCCCGTTCCTCTGCC 60.522 63.158 0.00 0.00 33.04 4.85
865 866 1.521681 CCGAATCCCGTTCCTCTGC 60.522 63.158 0.00 0.00 36.31 4.26
866 867 0.249398 AACCGAATCCCGTTCCTCTG 59.751 55.000 0.00 0.00 36.31 3.35
867 868 1.856629 TAACCGAATCCCGTTCCTCT 58.143 50.000 0.00 0.00 36.31 3.69
868 869 2.093816 ACTTAACCGAATCCCGTTCCTC 60.094 50.000 0.00 0.00 36.31 3.71
869 870 1.904537 ACTTAACCGAATCCCGTTCCT 59.095 47.619 0.00 0.00 36.31 3.36
870 871 2.004733 CACTTAACCGAATCCCGTTCC 58.995 52.381 0.00 0.00 36.31 3.62
871 872 2.691927 ACACTTAACCGAATCCCGTTC 58.308 47.619 0.00 0.00 36.31 3.95
872 873 2.809696 CAACACTTAACCGAATCCCGTT 59.190 45.455 0.00 0.00 36.31 4.44
873 874 2.037511 TCAACACTTAACCGAATCCCGT 59.962 45.455 0.00 0.00 36.31 5.28
874 875 2.690786 TCAACACTTAACCGAATCCCG 58.309 47.619 0.00 0.00 38.18 5.14
875 876 4.201783 CGAATCAACACTTAACCGAATCCC 60.202 45.833 0.00 0.00 0.00 3.85
876 877 4.628333 TCGAATCAACACTTAACCGAATCC 59.372 41.667 0.00 0.00 0.00 3.01
877 878 5.347907 ACTCGAATCAACACTTAACCGAATC 59.652 40.000 0.00 0.00 0.00 2.52
878 879 5.120208 CACTCGAATCAACACTTAACCGAAT 59.880 40.000 0.00 0.00 0.00 3.34
879 880 4.446385 CACTCGAATCAACACTTAACCGAA 59.554 41.667 0.00 0.00 0.00 4.30
880 881 3.985279 CACTCGAATCAACACTTAACCGA 59.015 43.478 0.00 0.00 0.00 4.69
881 882 3.985279 TCACTCGAATCAACACTTAACCG 59.015 43.478 0.00 0.00 0.00 4.44
882 883 5.917541 TTCACTCGAATCAACACTTAACC 57.082 39.130 0.00 0.00 0.00 2.85
883 884 6.303259 GCAATTCACTCGAATCAACACTTAAC 59.697 38.462 0.00 0.00 41.12 2.01
884 885 6.017523 TGCAATTCACTCGAATCAACACTTAA 60.018 34.615 0.00 0.00 41.12 1.85
885 886 5.468409 TGCAATTCACTCGAATCAACACTTA 59.532 36.000 0.00 0.00 41.12 2.24
886 887 4.275689 TGCAATTCACTCGAATCAACACTT 59.724 37.500 0.00 0.00 41.12 3.16
887 888 3.814842 TGCAATTCACTCGAATCAACACT 59.185 39.130 0.00 0.00 41.12 3.55
888 889 4.145876 TGCAATTCACTCGAATCAACAC 57.854 40.909 0.00 0.00 41.12 3.32
889 890 4.827304 TTGCAATTCACTCGAATCAACA 57.173 36.364 0.00 0.00 41.12 3.33
890 891 6.509317 TTTTTGCAATTCACTCGAATCAAC 57.491 33.333 0.00 0.00 41.12 3.18
931 932 4.563337 ATGATGACAATTGGATGCTTCG 57.437 40.909 10.83 0.00 0.00 3.79
946 947 2.031560 GGACGCGCAACAAATATGATGA 59.968 45.455 5.73 0.00 31.40 2.92
1024 1025 3.427528 GTCAGAAATCGTGTTAACTGCGA 59.572 43.478 21.31 21.31 39.02 5.10
1098 1099 2.660802 CCCTAACGGCCGTCAACT 59.339 61.111 34.29 19.18 0.00 3.16
1353 1398 2.357154 CCTAACCCTAGGTGCAAAGCAT 60.357 50.000 8.29 0.00 41.91 3.79
1401 1458 2.664402 ACTGCTCCAAACATGGTCTT 57.336 45.000 0.00 0.00 0.00 3.01
1655 1732 6.163476 TGCAGACTAACTACCAATAACACAG 58.837 40.000 0.00 0.00 0.00 3.66
1663 1740 7.446769 TGAATTTACTGCAGACTAACTACCAA 58.553 34.615 23.35 0.00 0.00 3.67
1894 2027 7.551035 TGCTTGCAAAATCACTGTTAAAAAT 57.449 28.000 0.00 0.00 0.00 1.82
2193 2336 7.254932 CCAACTCTTTCTTATACTTAGCATGGC 60.255 40.741 0.00 0.00 0.00 4.40
2399 2542 4.551702 TCTTGCCAAAGTCAGCACTATA 57.448 40.909 0.00 0.00 39.10 1.31
2449 2592 1.131638 TGCACTTCACCTCCTTCAGT 58.868 50.000 0.00 0.00 0.00 3.41
2459 2602 4.569943 TGAGACCTAAGAATGCACTTCAC 58.430 43.478 10.26 0.00 36.24 3.18
2557 2813 3.244561 CCACCAGAAACTCCAGCTTCTTA 60.245 47.826 0.00 0.00 28.83 2.10
2757 3049 9.461312 AGGTAGTTTTGCAGATAAATATCACAA 57.539 29.630 3.45 4.54 35.17 3.33
2764 3056 6.485171 ACTGGAGGTAGTTTTGCAGATAAAT 58.515 36.000 0.00 0.00 36.41 1.40
2827 3119 5.449999 GCTAACAACATTACATAACTGGGGC 60.450 44.000 0.00 0.00 0.00 5.80
2931 3237 4.613925 TGTAAGCATTTGCCCAATTTGA 57.386 36.364 0.00 0.00 43.38 2.69
3048 3354 9.494271 GAGTGCAATGTAATAAATCCTAGATGA 57.506 33.333 0.00 0.00 0.00 2.92
3232 3538 0.912486 GGCTCCAACCCTACTGATGT 59.088 55.000 0.00 0.00 0.00 3.06
3343 3649 2.760385 GGCCAGGCGTAGAGAGGT 60.760 66.667 5.00 0.00 0.00 3.85
3512 3906 9.232882 ACCATTAATCTATTTCCTACCTACCAA 57.767 33.333 0.00 0.00 0.00 3.67
3646 4040 5.103686 AGCCACCCTAAAGCCTAAATGATTA 60.104 40.000 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.