AutoCloner

Multiple sequence alignment - TraesCS1A01G141800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G141800	chr1A	100.000	2360	0	0	1	2360	241378560	241376201	0.000000e+00	4359.0
1	TraesCS1A01G141800	chr1A	78.774	636	126	8	2	631	38586926	38586294	3.630000e-113	418.0
2	TraesCS1A01G141800	chr1A	78.145	636	128	9	4	631	38639987	38639355	6.110000e-106	394.0
3	TraesCS1A01G141800	chr1D	92.071	1690	68	19	671	2341	194202467	194200825	0.000000e+00	2318.0
4	TraesCS1A01G141800	chr1B	87.132	1461	147	19	1	1428	268900445	268898993	0.000000e+00	1618.0
5	TraesCS1A01G141800	chr1B	91.611	906	35	11	1444	2341	268898938	268898066	0.000000e+00	1214.0
6	TraesCS1A01G141800	chr1B	80.876	685	120	10	6	686	341935566	341934889	1.610000e-146	529.0
7	TraesCS1A01G141800	chr3B	81.145	594	102	10	8	596	204378293	204377705	3.550000e-128	468.0
8	TraesCS1A01G141800	chr3B	79.520	625	107	15	5	620	27991874	27992486	2.170000e-115	425.0
9	TraesCS1A01G141800	chr3B	83.673	98	15	1	742	838	732437918	732438015	8.980000e-15	91.6
10	TraesCS1A01G141800	chr7B	78.998	619	124	6	4	620	665287761	665287147	3.630000e-113	418.0
11	TraesCS1A01G141800	chr3D	83.784	444	60	9	158	596	142634328	142633892	6.070000e-111	411.0
12	TraesCS1A01G141800	chr3D	82.609	92	16	0	742	833	549234860	549234951	5.410000e-12	82.4
13	TraesCS1A01G141800	chr3A	79.327	624	90	27	2	609	419547117	419546517	3.650000e-108	401.0
14	TraesCS1A01G141800	chr2D	80.321	498	95	3	132	628	551210508	551211003	7.960000e-100	374.0
15	TraesCS1A01G141800	chr2D	91.071	56	5	0	790	845	80797536	80797591	2.520000e-10	76.8
16	TraesCS1A01G141800	chr5A	84.127	189	29	1	1	188	457907201	457907013	5.180000e-42	182.0
17	TraesCS1A01G141800	chr5B	77.640	161	24	7	689	838	529387277	529387436	1.160000e-13	87.9
18	TraesCS1A01G141800	chr5B	78.641	103	22	0	736	838	607257707	607257809	4.210000e-08	69.4
19	TraesCS1A01G141800	chr6A	95.652	46	2	0	793	838	608714625	608714670	9.050000e-10	75.0
20	TraesCS1A01G141800	chr6A	90.566	53	5	0	793	845	62963086	62963034	1.170000e-08	71.3
21	TraesCS1A01G141800	chr4B	95.652	46	2	0	793	838	517953830	517953785	9.050000e-10	75.0
22	TraesCS1A01G141800	chr7A	93.478	46	3	0	644	689	25138822	25138777	4.210000e-08	69.4
23	TraesCS1A01G141800	chr7D	92.857	42	3	0	646	687	368815049	368815008	7.040000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G141800	chr1A	241376201	241378560	2359	True	4359	4359	100.0000	1	2360	1	chr1A.!!$R3	2359
1	TraesCS1A01G141800	chr1A	38586294	38586926	632	True	418	418	78.7740	2	631	1	chr1A.!!$R1	629
2	TraesCS1A01G141800	chr1A	38639355	38639987	632	True	394	394	78.1450	4	631	1	chr1A.!!$R2	627
3	TraesCS1A01G141800	chr1D	194200825	194202467	1642	True	2318	2318	92.0710	671	2341	1	chr1D.!!$R1	1670
4	TraesCS1A01G141800	chr1B	268898066	268900445	2379	True	1416	1618	89.3715	1	2341	2	chr1B.!!$R2	2340
5	TraesCS1A01G141800	chr1B	341934889	341935566	677	True	529	529	80.8760	6	686	1	chr1B.!!$R1	680
6	TraesCS1A01G141800	chr3B	204377705	204378293	588	True	468	468	81.1450	8	596	1	chr3B.!!$R1	588
7	TraesCS1A01G141800	chr3B	27991874	27992486	612	False	425	425	79.5200	5	620	1	chr3B.!!$F1	615
8	TraesCS1A01G141800	chr7B	665287147	665287761	614	True	418	418	78.9980	4	620	1	chr7B.!!$R1	616
9	TraesCS1A01G141800	chr3A	419546517	419547117	600	True	401	401	79.3270	2	609	1	chr3A.!!$R1	607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
94	95	0.178935	GAGGAGATCCAGGCTAGGCT	60.179	60.0	14.1	14.1	38.89	4.58	F
130	133	0.331954	TCTGAGCTACCTTCGGACCT	59.668	55.0	0.0	0.0	0.00	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1065	1130	1.040339	GCTCAGGGTCACGGATCTCT	61.040	60.0	0.0	0.0	0.00	3.10	R
1473	1577	2.041620	GGCCCATATGGATGTGGTATGT	59.958	50.0	24.0	0.0	37.36	2.29	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	1.449423	CATCGCCATGGTCCGACAA	60.449	57.895	15.48	0.00	36.18	3.18
28	29	0.521735	GCCATGGTCCGACAAAAGAC	59.478	55.000	14.67	0.00	0.00	3.01
38	39	2.409975	CGACAAAAGACCACCACGTAT	58.590	47.619	0.00	0.00	0.00	3.06
94	95	0.178935	GAGGAGATCCAGGCTAGGCT	60.179	60.000	14.10	14.10	38.89	4.58
98	99	2.444706	ATCCAGGCTAGGCTCGCA	60.445	61.111	17.30	3.20	0.00	5.10
109	110	3.574445	GCTCGCAGCCTGCATCAG	61.574	66.667	18.21	10.01	45.36	2.90
111	112	1.744368	CTCGCAGCCTGCATCAGTT	60.744	57.895	18.21	0.00	45.36	3.16
129	132	1.135053	GTTCTGAGCTACCTTCGGACC	60.135	57.143	0.00	0.00	29.96	4.46
130	133	0.331954	TCTGAGCTACCTTCGGACCT	59.668	55.000	0.00	0.00	0.00	3.85
280	292	2.436646	CCAAGCCGCGAAGATGGT	60.437	61.111	8.23	0.00	0.00	3.55
285	297	2.579201	CCGCGAAGATGGTGGAGT	59.421	61.111	8.23	0.00	37.22	3.85
346	358	0.610785	GAGGCCAACCGGGAATTTCA	60.611	55.000	6.32	0.00	42.76	2.69
349	361	1.614850	GGCCAACCGGGAATTTCACTA	60.615	52.381	6.32	0.00	40.01	2.74
351	363	2.617021	GCCAACCGGGAATTTCACTAGA	60.617	50.000	6.32	0.00	40.01	2.43
475	496	0.471971	ATGTACCTAGAGCCGGGCAT	60.472	55.000	23.09	11.97	0.00	4.40
481	502	1.814772	CTAGAGCCGGGCATGGAGAG	61.815	65.000	23.09	5.44	0.00	3.20
483	504	2.688666	AGCCGGGCATGGAGAGAA	60.689	61.111	23.09	0.00	0.00	2.87
494	515	4.319139	CATGGAGAGAATCGACATGTCT	57.681	45.455	22.95	4.97	43.87	3.41
537	562	8.006027	GTGATTTGTGTAGTACGTAGGTTTTTC	58.994	37.037	0.00	0.00	0.00	2.29
558	583	3.005261	TCCGTTTGCATGCTTTTGTATGT	59.995	39.130	20.33	0.00	43.17	2.29
605	631	1.665679	CGATGCAGTTGCGGTAATCTT	59.334	47.619	0.00	0.00	45.83	2.40
620	646	0.765510	ATCTTAGGATTGCCCGGTCC	59.234	55.000	0.00	0.00	40.87	4.46
652	682	0.738063	ATGTCCGCACGCGTTTGATA	60.738	50.000	10.22	5.07	37.81	2.15
701	732	4.351111	AGATGCTCTTATATCCCCCGTTTT	59.649	41.667	0.00	0.00	0.00	2.43
715	746	7.868906	TCCCCCGTTTTTAAATATAAGTCAG	57.131	36.000	0.00	0.00	0.00	3.51
716	747	7.631933	TCCCCCGTTTTTAAATATAAGTCAGA	58.368	34.615	0.00	0.00	0.00	3.27
717	748	7.771826	TCCCCCGTTTTTAAATATAAGTCAGAG	59.228	37.037	0.00	0.00	0.00	3.35
718	749	7.012989	CCCCCGTTTTTAAATATAAGTCAGAGG	59.987	40.741	0.00	0.00	0.00	3.69
734	771	8.641498	AAGTCAGAGGTTTCAACATAAATGAT	57.359	30.769	0.00	0.00	0.00	2.45
762	799	8.433421	AAGGATGTATGTTGACGTATTTTAGG	57.567	34.615	0.00	0.00	0.00	2.69
1080	1145	2.418910	CGCAGAGATCCGTGACCCT	61.419	63.158	0.00	0.00	0.00	4.34
1200	1265	1.743995	CGTGCTAAACTTCCCCGGG	60.744	63.158	15.80	15.80	0.00	5.73
1370	1435	5.046529	CGGTGGTAAATGAGAGAGAGATTG	58.953	45.833	0.00	0.00	0.00	2.67
1376	1441	7.179160	TGGTAAATGAGAGAGAGATTGTCTTGA	59.821	37.037	0.00	0.00	34.71	3.02
1415	1480	1.202382	GCATGCAGAAGAAATGGCCTC	60.202	52.381	14.21	0.00	0.00	4.70
1428	1493	6.376248	AGAAATGGCCTCCACAAATACATAT	58.624	36.000	3.32	0.00	35.80	1.78
1435	1500	6.427150	GCCTCCACAAATACATATGTAAACG	58.573	40.000	19.11	12.17	33.76	3.60
1436	1501	6.037830	GCCTCCACAAATACATATGTAAACGT	59.962	38.462	19.11	12.75	33.76	3.99
1437	1502	7.225145	GCCTCCACAAATACATATGTAAACGTA	59.775	37.037	19.11	0.00	33.76	3.57
1438	1503	8.761497	CCTCCACAAATACATATGTAAACGTAG	58.239	37.037	19.11	9.54	33.76	3.51
1454	1558	9.489393	TGTAAACGTAGATGTAAACTATACACG	57.511	33.333	0.00	0.00	0.00	4.49
1459	1563	8.344831	ACGTAGATGTAAACTATACACGCATAA	58.655	33.333	0.00	0.00	0.00	1.90
1471	1575	9.188588	ACTATACACGCATAATAACACACATAC	57.811	33.333	0.00	0.00	0.00	2.39
1472	1576	5.728351	ACACGCATAATAACACACATACC	57.272	39.130	0.00	0.00	0.00	2.73
1473	1577	5.179533	ACACGCATAATAACACACATACCA	58.820	37.500	0.00	0.00	0.00	3.25
1571	1675	2.665165	AGTTGCAATTTCCACCACTGA	58.335	42.857	0.59	0.00	0.00	3.41
1573	1677	3.642848	AGTTGCAATTTCCACCACTGAAT	59.357	39.130	0.59	0.00	0.00	2.57
1643	1747	1.950909	CCCTAAACAAAAGACACGCCA	59.049	47.619	0.00	0.00	0.00	5.69
1657	1761	1.446099	CGCCAGACGTGCACAGTAT	60.446	57.895	18.64	10.22	36.87	2.12
1714	1818	3.924144	TCATGGCAAAACAAGGCAATAC	58.076	40.909	0.00	0.00	45.03	1.89
1715	1819	3.323115	TCATGGCAAAACAAGGCAATACA	59.677	39.130	0.00	0.00	45.03	2.29
1716	1820	4.020396	TCATGGCAAAACAAGGCAATACAT	60.020	37.500	0.00	0.00	45.03	2.29
1717	1821	5.186603	TCATGGCAAAACAAGGCAATACATA	59.813	36.000	0.00	0.00	45.03	2.29
1880	1984	4.496360	TGTTATCAATGTGGCAATTGCAG	58.504	39.130	30.32	13.01	44.36	4.41
2116	2220	4.095932	TCTCTTCGCGTGTGTAATCTATGT	59.904	41.667	5.77	0.00	0.00	2.29
2117	2221	4.348656	TCTTCGCGTGTGTAATCTATGTC	58.651	43.478	5.77	0.00	0.00	3.06
2118	2222	3.768468	TCGCGTGTGTAATCTATGTCA	57.232	42.857	5.77	0.00	0.00	3.58
2119	2223	4.301637	TCGCGTGTGTAATCTATGTCAT	57.698	40.909	5.77	0.00	0.00	3.06
2181	2286	2.983192	TGTGGACCTTGGAAGACCATTA	59.017	45.455	0.00	0.00	46.34	1.90
2208	2320	7.063074	GCTAGATCTAGTAAACAAAAGCACGAA	59.937	37.037	26.73	0.00	35.65	3.85
2304	2416	4.034285	ACTCCCTGATTTAAACCACAGG	57.966	45.455	21.23	21.23	46.37	4.00
2306	2418	2.109128	TCCCTGATTTAAACCACAGGCA	59.891	45.455	22.10	12.24	45.72	4.75
2341	2453	3.194968	TGTTAATTCCCTCTCTCGTCACC	59.805	47.826	0.00	0.00	0.00	4.02
2342	2454	0.818296	AATTCCCTCTCTCGTCACCG	59.182	55.000	0.00	0.00	0.00	4.94
2343	2455	1.038130	ATTCCCTCTCTCGTCACCGG	61.038	60.000	0.00	0.00	33.95	5.28
2344	2456	2.045242	CCCTCTCTCGTCACCGGA	60.045	66.667	9.46	0.00	33.95	5.14
2345	2457	1.677966	CCCTCTCTCGTCACCGGAA	60.678	63.158	9.46	0.00	33.95	4.30
2346	2458	1.248785	CCCTCTCTCGTCACCGGAAA	61.249	60.000	9.46	0.00	33.95	3.13
2347	2459	0.601558	CCTCTCTCGTCACCGGAAAA	59.398	55.000	9.46	0.00	33.95	2.29
2348	2460	1.000506	CCTCTCTCGTCACCGGAAAAA	59.999	52.381	9.46	0.00	33.95	1.94
2349	2461	2.329379	CTCTCTCGTCACCGGAAAAAG	58.671	52.381	9.46	0.00	33.95	2.27
2350	2462	1.000506	TCTCTCGTCACCGGAAAAAGG	59.999	52.381	9.46	0.00	33.95	3.11
2351	2463	1.000506	CTCTCGTCACCGGAAAAAGGA	59.999	52.381	9.46	0.32	33.95	3.36
2352	2464	1.413445	TCTCGTCACCGGAAAAAGGAA	59.587	47.619	9.46	0.00	33.95	3.36
2353	2465	2.158928	TCTCGTCACCGGAAAAAGGAAA	60.159	45.455	9.46	0.00	33.95	3.13
2354	2466	1.941975	TCGTCACCGGAAAAAGGAAAC	59.058	47.619	9.46	0.00	33.95	2.78
2355	2467	1.671845	CGTCACCGGAAAAAGGAAACA	59.328	47.619	9.46	0.00	0.00	2.83
2356	2468	2.292292	CGTCACCGGAAAAAGGAAACAT	59.708	45.455	9.46	0.00	0.00	2.71
2357	2469	3.608474	CGTCACCGGAAAAAGGAAACATC	60.608	47.826	9.46	0.00	0.00	3.06
2358	2470	2.888414	TCACCGGAAAAAGGAAACATCC	59.112	45.455	9.46	0.00	0.00	3.51
2359	2471	2.029380	CACCGGAAAAAGGAAACATCCC	60.029	50.000	9.46	0.00	0.00	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	3.531538	CATAGCATACGTGGTGGTCTTT	58.468	45.455	10.16	0.00	37.28	2.52
28	29	1.202521	TCAGCATAGCATACGTGGTGG	60.203	52.381	0.00	0.00	40.64	4.61
38	39	1.257750	ACTCCGGTGTCAGCATAGCA	61.258	55.000	2.61	0.00	0.00	3.49
62	63	0.551396	TCTCCTCCGTGATCTGCCTA	59.449	55.000	0.00	0.00	0.00	3.93
98	99	0.392729	GCTCAGAACTGATGCAGGCT	60.393	55.000	15.62	0.00	39.13	4.58
152	155	1.454847	CTCCGGTAGCTGCTCTCCT	60.455	63.158	4.91	0.00	0.00	3.69
214	220	0.616371	CATGGTGAACCCCGGAACTA	59.384	55.000	0.73	0.00	34.29	2.24
215	221	1.378762	CATGGTGAACCCCGGAACT	59.621	57.895	0.73	0.00	34.29	3.01
217	223	1.847798	CTCCATGGTGAACCCCGGAA	61.848	60.000	12.58	0.00	35.64	4.30
280	292	0.264657	TAGGATGGCCTGCTACTCCA	59.735	55.000	3.32	0.00	46.45	3.86
285	297	2.320781	GAACTCTAGGATGGCCTGCTA	58.679	52.381	3.32	3.76	46.45	3.49
317	329	0.331616	GGTTGGCCTCCACATAGGTT	59.668	55.000	3.32	0.00	39.02	3.50
318	330	1.910580	CGGTTGGCCTCCACATAGGT	61.911	60.000	3.32	0.00	39.02	3.08
346	358	1.001145	ACCGTCCGCTCCTTCTAGT	60.001	57.895	0.00	0.00	0.00	2.57
349	361	2.282958	TCACCGTCCGCTCCTTCT	60.283	61.111	0.00	0.00	0.00	2.85
351	363	3.692406	GGTCACCGTCCGCTCCTT	61.692	66.667	0.00	0.00	0.00	3.36
475	496	3.129462	GTCAGACATGTCGATTCTCTCCA	59.871	47.826	19.85	0.00	34.09	3.86
481	502	2.097629	TCCTCGTCAGACATGTCGATTC	59.902	50.000	19.85	10.84	44.02	2.52
483	504	1.673400	CTCCTCGTCAGACATGTCGAT	59.327	52.381	19.85	0.53	44.02	3.59
491	512	2.215196	CCTAGCTACTCCTCGTCAGAC	58.785	57.143	0.00	0.00	0.00	3.51
494	515	1.558294	TCACCTAGCTACTCCTCGTCA	59.442	52.381	0.00	0.00	0.00	4.35
537	562	3.316283	ACATACAAAAGCATGCAAACGG	58.684	40.909	21.98	7.63	0.00	4.44
585	611	1.290203	AGATTACCGCAACTGCATCG	58.710	50.000	2.12	0.00	42.21	3.84
605	631	2.070039	CAGGGACCGGGCAATCCTA	61.070	63.158	11.00	0.00	35.15	2.94
632	662	2.239341	ATCAAACGCGTGCGGACATG	62.239	55.000	14.98	11.08	44.69	3.21
633	663	0.738063	TATCAAACGCGTGCGGACAT	60.738	50.000	14.98	1.91	44.69	3.06
642	672	1.567504	AATCCGACCTATCAAACGCG	58.432	50.000	3.53	3.53	0.00	6.01
652	682	1.376609	GCGATTGGCAAATCCGACCT	61.377	55.000	19.22	0.00	39.29	3.85
747	784	7.838771	AATCTACACCCTAAAATACGTCAAC	57.161	36.000	0.00	0.00	0.00	3.18
833	882	5.955959	ACAGTGTATGTAGGTAATCACTCCA	59.044	40.000	0.00	0.00	41.60	3.86
838	887	7.207383	GCATGTACAGTGTATGTAGGTAATCA	58.793	38.462	6.21	0.00	45.06	2.57
841	890	5.163385	GGGCATGTACAGTGTATGTAGGTAA	60.163	44.000	6.21	0.00	45.06	2.85
849	908	0.179056	GCCGGGCATGTACAGTGTAT	60.179	55.000	15.62	0.00	0.00	2.29
1065	1130	1.040339	GCTCAGGGTCACGGATCTCT	61.040	60.000	0.00	0.00	0.00	3.10
1216	1281	3.745803	GGACGAAGACGAGCCGGT	61.746	66.667	1.90	0.00	42.66	5.28
1370	1435	6.466308	TGCATATATACGTGCATTCAAGAC	57.534	37.500	6.88	0.00	45.60	3.01
1428	1493	9.489393	CGTGTATAGTTTACATCTACGTTTACA	57.511	33.333	0.00	0.00	0.00	2.41
1440	1505	9.583765	TGTGTTATTATGCGTGTATAGTTTACA	57.416	29.630	0.00	0.00	0.00	2.41
1441	1506	9.839589	GTGTGTTATTATGCGTGTATAGTTTAC	57.160	33.333	0.00	0.00	0.00	2.01
1442	1507	9.583765	TGTGTGTTATTATGCGTGTATAGTTTA	57.416	29.630	0.00	0.00	0.00	2.01
1449	1553	6.256104	GTGGTATGTGTGTTATTATGCGTGTA	59.744	38.462	0.00	0.00	0.00	2.90
1454	1558	7.227711	TGGTATGTGGTATGTGTGTTATTATGC	59.772	37.037	0.00	0.00	0.00	3.14
1459	1563	6.056090	TGTGGTATGTGGTATGTGTGTTAT	57.944	37.500	0.00	0.00	0.00	1.89
1461	1565	4.359434	TGTGGTATGTGGTATGTGTGTT	57.641	40.909	0.00	0.00	0.00	3.32
1471	1575	3.689347	CCCATATGGATGTGGTATGTGG	58.311	50.000	24.00	0.00	37.36	4.17
1472	1576	3.084039	GCCCATATGGATGTGGTATGTG	58.916	50.000	24.00	2.65	37.36	3.21
1473	1577	2.041620	GGCCCATATGGATGTGGTATGT	59.958	50.000	24.00	0.00	37.36	2.29
1599	1703	6.351749	GCACGAAACAAAAGCGATTATTTTT	58.648	32.000	0.00	0.00	0.00	1.94
1657	1761	7.274447	TCATTCATCACAGAAGTACATATGCA	58.726	34.615	1.58	0.00	0.00	3.96
1663	1767	8.122472	TCTAGTTCATTCATCACAGAAGTACA	57.878	34.615	0.00	0.00	0.00	2.90
1714	1818	8.851960	AGATACAACAGTAACACGTACATATG	57.148	34.615	0.00	0.00	34.88	1.78
1759	1863	3.670377	GCCGCCACCCAACACTTC	61.670	66.667	0.00	0.00	0.00	3.01
2116	2220	3.328093	TAAGCAGCCGCAGCCATGA	62.328	57.895	3.83	0.00	42.27	3.07
2117	2221	2.825387	TAAGCAGCCGCAGCCATG	60.825	61.111	3.83	0.00	42.27	3.66
2118	2222	2.825836	GTAAGCAGCCGCAGCCAT	60.826	61.111	3.83	0.00	42.27	4.40
2181	2286	6.531948	CGTGCTTTTGTTTACTAGATCTAGCT	59.468	38.462	26.50	16.86	36.66	3.32
2218	2330	7.041780	CCTTAATAATTAATCACGTGAGCAGCT	60.042	37.037	24.41	10.51	0.00	4.24
2304	2416	0.392461	TAACAAGGCGAGGTGGATGC	60.392	55.000	0.00	0.00	0.00	3.91
2306	2418	3.279434	GAATTAACAAGGCGAGGTGGAT	58.721	45.455	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.