Multiple sequence alignment - TraesCS1A01G141500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G141500 chr1A 100.000 2945 0 0 1 2945 239904834 239907778 0.000000e+00 5439.0
1 TraesCS1A01G141500 chr1B 92.126 2032 103 19 670 2662 268285862 268287875 0.000000e+00 2813.0
2 TraesCS1A01G141500 chr1B 93.573 389 19 3 23 406 268284493 268284880 2.550000e-160 575.0
3 TraesCS1A01G141500 chr1B 89.912 228 15 2 412 633 268285279 268285504 1.340000e-73 287.0
4 TraesCS1A01G141500 chr1B 97.561 41 1 0 471 511 412897642 412897602 1.460000e-08 71.3
5 TraesCS1A01G141500 chr1D 91.569 1886 99 27 821 2664 193448464 193450331 0.000000e+00 2547.0
6 TraesCS1A01G141500 chr1D 84.238 387 27 16 87 469 193435071 193435427 2.170000e-91 346.0
7 TraesCS1A01G141500 chr1D 81.148 244 24 7 595 823 193448193 193448429 3.020000e-40 176.0
8 TraesCS1A01G141500 chr3D 82.292 480 68 7 2189 2654 568492001 568492477 1.640000e-107 399.0
9 TraesCS1A01G141500 chr3D 77.099 524 98 14 2151 2661 497898089 497898603 1.730000e-72 283.0
10 TraesCS1A01G141500 chr3D 97.561 41 1 0 471 511 540575916 540575956 1.460000e-08 71.3
11 TraesCS1A01G141500 chr3B 79.355 465 76 18 2191 2644 584531702 584532157 2.850000e-80 309.0
12 TraesCS1A01G141500 chr3B 78.754 353 64 6 2318 2666 514012301 514011956 2.950000e-55 226.0
13 TraesCS1A01G141500 chr3B 75.681 477 100 11 2194 2655 559897008 559897483 1.060000e-54 224.0
14 TraesCS1A01G141500 chr5D 78.049 492 91 13 2151 2635 56911019 56910538 7.980000e-76 294.0
15 TraesCS1A01G141500 chr5D 79.787 376 67 8 2174 2544 385924551 385924922 6.260000e-67 265.0
16 TraesCS1A01G141500 chr5D 93.617 47 2 1 471 517 191259065 191259020 5.270000e-08 69.4
17 TraesCS1A01G141500 chr2B 77.444 399 80 9 2194 2586 448081147 448081541 2.280000e-56 230.0
18 TraesCS1A01G141500 chr2B 93.333 45 3 0 471 515 136176100 136176056 1.890000e-07 67.6
19 TraesCS1A01G141500 chr2B 97.436 39 1 0 633 671 390945148 390945186 1.890000e-07 67.6
20 TraesCS1A01G141500 chr7B 75.862 464 98 13 2202 2655 327156002 327155543 1.060000e-54 224.0
21 TraesCS1A01G141500 chr7D 97.561 41 1 0 471 511 299188976 299188936 1.460000e-08 71.3
22 TraesCS1A01G141500 chr5A 93.750 48 2 1 471 518 228887840 228887886 1.460000e-08 71.3
23 TraesCS1A01G141500 chr5B 93.333 45 3 0 471 515 635464513 635464469 1.890000e-07 67.6
24 TraesCS1A01G141500 chr6D 90.196 51 3 2 469 519 302639680 302639632 6.810000e-07 65.8
25 TraesCS1A01G141500 chr4B 100.000 33 0 0 637 669 77663010 77662978 8.810000e-06 62.1
26 TraesCS1A01G141500 chr4B 96.970 33 1 0 637 669 77662924 77662956 4.100000e-04 56.5
27 TraesCS1A01G141500 chr4D 100.000 32 0 0 638 669 91094197 91094228 3.170000e-05 60.2
28 TraesCS1A01G141500 chr4D 90.698 43 0 3 2136 2178 27120329 27120291 1.000000e-03 54.7
29 TraesCS1A01G141500 chr4A 100.000 32 0 0 638 669 503327031 503327062 3.170000e-05 60.2
30 TraesCS1A01G141500 chr3A 100.000 32 0 0 638 669 655539837 655539806 3.170000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G141500 chr1A 239904834 239907778 2944 False 5439.0 5439 100.000000 1 2945 1 chr1A.!!$F1 2944
1 TraesCS1A01G141500 chr1B 268284493 268287875 3382 False 1225.0 2813 91.870333 23 2662 3 chr1B.!!$F1 2639
2 TraesCS1A01G141500 chr1D 193448193 193450331 2138 False 1361.5 2547 86.358500 595 2664 2 chr1D.!!$F2 2069
3 TraesCS1A01G141500 chr3D 497898089 497898603 514 False 283.0 283 77.099000 2151 2661 1 chr3D.!!$F1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 1776 0.250989 AATCGCTCCCCCGAACAAAA 60.251 50.0 0.0 0.0 41.01 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2915 3761 0.034767 ATCCAGTGTGGTGCCTCATG 60.035 55.0 0.0 0.0 39.03 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.403252 CCCGGAGCTGTTAGACATTT 57.597 50.000 0.73 0.00 0.00 2.32
20 21 2.280628 CCCGGAGCTGTTAGACATTTC 58.719 52.381 0.73 0.00 0.00 2.17
21 22 2.093447 CCCGGAGCTGTTAGACATTTCT 60.093 50.000 0.73 0.00 35.66 2.52
28 29 7.593273 CGGAGCTGTTAGACATTTCTCTATTAG 59.407 40.741 0.00 0.00 32.75 1.73
48 49 6.890663 TTAGTAACCATTATTTCCACGTCG 57.109 37.500 0.00 0.00 0.00 5.12
227 233 1.815613 CCATTGTGGCGGTAATGTTGA 59.184 47.619 0.00 0.00 33.52 3.18
249 255 6.227522 TGAAACATAGAAGTCATTTCCGTGA 58.772 36.000 0.00 0.00 36.40 4.35
256 262 2.779506 AGTCATTTCCGTGAACTTCCC 58.220 47.619 0.00 0.00 0.00 3.97
260 266 2.047213 TTTCCGTGAACTTCCCGCCT 62.047 55.000 0.00 0.00 0.00 5.52
261 267 2.032071 CCGTGAACTTCCCGCCTT 59.968 61.111 0.00 0.00 0.00 4.35
271 277 7.414319 CGTGAACTTCCCGCCTTATAATTAAAA 60.414 37.037 0.00 0.00 0.00 1.52
330 336 1.019278 GCCGGCGAGTTTGAAGATGA 61.019 55.000 12.58 0.00 0.00 2.92
466 865 8.403236 GTCAACATATTCACATAAAAGTACCCC 58.597 37.037 0.00 0.00 0.00 4.95
467 866 7.558444 TCAACATATTCACATAAAAGTACCCCC 59.442 37.037 0.00 0.00 0.00 5.40
471 870 4.837093 TCACATAAAAGTACCCCCTCTG 57.163 45.455 0.00 0.00 0.00 3.35
480 879 4.904895 AGTACCCCCTCTGAACTAAAAC 57.095 45.455 0.00 0.00 0.00 2.43
496 895 8.286800 TGAACTAAAACCACGACAAGAATTATG 58.713 33.333 0.00 0.00 0.00 1.90
498 897 6.713450 ACTAAAACCACGACAAGAATTATGGT 59.287 34.615 0.00 0.00 42.22 3.55
522 921 7.339976 GGTACAGAGGGAGTAACTATATCCATC 59.660 44.444 0.00 0.00 42.75 3.51
653 1342 4.115398 ACTACTACACCCTCTGTTCACT 57.885 45.455 0.00 0.00 33.91 3.41
702 1428 3.310774 CAGAGGGATTACAAAGCATCGTG 59.689 47.826 0.00 0.00 0.00 4.35
818 1557 1.066908 GAGTCAGCGATTGAGGAGGAG 59.933 57.143 0.00 0.00 36.21 3.69
968 1767 0.389817 GCAAAAACCAATCGCTCCCC 60.390 55.000 0.00 0.00 0.00 4.81
972 1771 2.132089 AAACCAATCGCTCCCCCGAA 62.132 55.000 0.00 0.00 41.01 4.30
974 1773 2.267642 CAATCGCTCCCCCGAACA 59.732 61.111 0.00 0.00 41.01 3.18
975 1774 1.376683 CAATCGCTCCCCCGAACAA 60.377 57.895 0.00 0.00 41.01 2.83
976 1775 0.958382 CAATCGCTCCCCCGAACAAA 60.958 55.000 0.00 0.00 41.01 2.83
977 1776 0.250989 AATCGCTCCCCCGAACAAAA 60.251 50.000 0.00 0.00 41.01 2.44
978 1777 0.676782 ATCGCTCCCCCGAACAAAAG 60.677 55.000 0.00 0.00 41.01 2.27
1041 1846 4.516195 GCGACTCTTCTCCCCGCC 62.516 72.222 0.00 0.00 39.97 6.13
1116 1921 0.396811 CCAACTCCAACCTCTTCCGT 59.603 55.000 0.00 0.00 0.00 4.69
1401 2206 3.920196 AACGTCACCTCCGGCGTT 61.920 61.111 6.01 9.11 41.79 4.84
1448 2253 2.190313 GCTGACCGGCATCATCCA 59.810 61.111 0.00 0.00 0.00 3.41
2037 2850 5.689514 CGATTTTAATTGTTGGTTGACTGCA 59.310 36.000 0.00 0.00 0.00 4.41
2046 2859 3.627395 TGGTTGACTGCACCCTATTAG 57.373 47.619 0.00 0.00 0.00 1.73
2049 2862 1.879575 TGACTGCACCCTATTAGGCT 58.120 50.000 4.01 0.00 32.73 4.58
2149 2971 3.722908 AGCCCTTCCTCTAAACTTTCC 57.277 47.619 0.00 0.00 0.00 3.13
2160 2982 6.263168 TCCTCTAAACTTTCCTTTTGCAAGAG 59.737 38.462 9.98 9.98 30.57 2.85
2170 2992 4.709397 TCCTTTTGCAAGAGAAACTTCCAA 59.291 37.500 18.08 0.00 34.87 3.53
2181 3003 8.386606 CAAGAGAAACTTCCAATCTATTCTTCG 58.613 37.037 0.00 0.00 36.61 3.79
2185 3007 5.024785 ACTTCCAATCTATTCTTCGACCC 57.975 43.478 0.00 0.00 0.00 4.46
2211 3034 9.321562 CTTAAGGTAGTACAAAGAACACAGAAA 57.678 33.333 2.06 0.00 0.00 2.52
2251 3074 5.416947 GTTCGTAAACCACCTAGTGATGAT 58.583 41.667 0.00 0.00 35.23 2.45
2271 3094 1.561643 TACAAGCACTGGAGCTAGCT 58.438 50.000 19.45 19.45 45.89 3.32
2277 3100 0.901124 CACTGGAGCTAGCTGAAGGT 59.099 55.000 24.99 12.28 0.00 3.50
2339 3181 5.266733 ACCTTGTTGTAGTAAACAGTCGA 57.733 39.130 0.00 0.00 40.93 4.20
2346 3188 6.694411 TGTTGTAGTAAACAGTCGAGAAGTTC 59.306 38.462 0.00 0.00 39.87 3.01
2361 3203 0.526662 AGTTCTCGTGCTAAGACCCG 59.473 55.000 0.00 0.00 0.00 5.28
2415 3257 3.797184 GCCGATGAAGAGAAGCGTAGATT 60.797 47.826 0.00 0.00 41.04 2.40
2421 3263 4.462834 TGAAGAGAAGCGTAGATTGGAAGA 59.537 41.667 0.00 0.00 34.67 2.87
2512 3358 1.539560 CCATGAGATCCGCCGGAGAT 61.540 60.000 13.12 6.33 34.05 2.75
2519 3365 1.070289 GATCCGCCGGAGATAAACCTT 59.930 52.381 13.12 0.00 34.05 3.50
2529 3375 1.092348 GATAAACCTTCACACGCCCC 58.908 55.000 0.00 0.00 0.00 5.80
2554 3400 3.932710 GACGATGCTAGAAACACCATCAA 59.067 43.478 0.00 0.00 35.08 2.57
2559 3405 6.092122 CGATGCTAGAAACACCATCAAAACTA 59.908 38.462 0.00 0.00 35.08 2.24
2569 3415 2.092429 CCATCAAAACTAGGGCTAGGCA 60.092 50.000 19.14 0.00 37.49 4.75
2571 3417 2.546899 TCAAAACTAGGGCTAGGCAGA 58.453 47.619 19.14 3.87 37.49 4.26
2572 3418 2.910319 TCAAAACTAGGGCTAGGCAGAA 59.090 45.455 19.14 1.45 37.49 3.02
2574 3420 4.079253 CAAAACTAGGGCTAGGCAGAAAA 58.921 43.478 19.14 0.00 37.49 2.29
2599 3445 5.342866 ACCTTATTCCACCTACAGAGAGTT 58.657 41.667 0.00 0.00 0.00 3.01
2619 3465 3.966104 CGCCGCCTCGCATCTCTA 61.966 66.667 0.00 0.00 0.00 2.43
2684 3530 7.686438 AAAAAGGGATTTGTGATTATTTGCC 57.314 32.000 0.00 0.00 0.00 4.52
2685 3531 6.371595 AAAGGGATTTGTGATTATTTGCCA 57.628 33.333 0.00 0.00 0.00 4.92
2686 3532 5.343307 AGGGATTTGTGATTATTTGCCAC 57.657 39.130 0.00 0.00 0.00 5.01
2687 3533 4.776837 AGGGATTTGTGATTATTTGCCACA 59.223 37.500 0.00 0.00 38.83 4.17
2688 3534 5.248020 AGGGATTTGTGATTATTTGCCACAA 59.752 36.000 0.00 0.00 45.56 3.33
2689 3535 5.351189 GGGATTTGTGATTATTTGCCACAAC 59.649 40.000 0.00 0.00 46.47 3.32
2690 3536 6.165577 GGATTTGTGATTATTTGCCACAACT 58.834 36.000 0.00 0.00 46.47 3.16
2691 3537 6.650390 GGATTTGTGATTATTTGCCACAACTT 59.350 34.615 0.00 0.00 46.47 2.66
2692 3538 7.816995 GGATTTGTGATTATTTGCCACAACTTA 59.183 33.333 0.00 0.00 46.47 2.24
2693 3539 7.938563 TTTGTGATTATTTGCCACAACTTAC 57.061 32.000 0.00 0.00 46.47 2.34
2694 3540 6.892658 TGTGATTATTTGCCACAACTTACT 57.107 33.333 0.00 0.00 37.80 2.24
2695 3541 7.283625 TGTGATTATTTGCCACAACTTACTT 57.716 32.000 0.00 0.00 37.80 2.24
2696 3542 7.721402 TGTGATTATTTGCCACAACTTACTTT 58.279 30.769 0.00 0.00 37.80 2.66
2697 3543 7.651304 TGTGATTATTTGCCACAACTTACTTTG 59.349 33.333 0.00 0.00 37.80 2.77
2698 3544 7.865385 GTGATTATTTGCCACAACTTACTTTGA 59.135 33.333 0.00 0.00 0.00 2.69
2699 3545 8.417106 TGATTATTTGCCACAACTTACTTTGAA 58.583 29.630 0.00 0.00 0.00 2.69
2700 3546 7.995463 TTATTTGCCACAACTTACTTTGAAC 57.005 32.000 0.00 0.00 0.00 3.18
2701 3547 5.652994 TTTGCCACAACTTACTTTGAACT 57.347 34.783 0.00 0.00 0.00 3.01
2702 3548 5.652994 TTGCCACAACTTACTTTGAACTT 57.347 34.783 0.00 0.00 0.00 2.66
2703 3549 5.652994 TGCCACAACTTACTTTGAACTTT 57.347 34.783 0.00 0.00 0.00 2.66
2704 3550 5.406649 TGCCACAACTTACTTTGAACTTTG 58.593 37.500 0.00 0.00 0.00 2.77
2705 3551 5.184096 TGCCACAACTTACTTTGAACTTTGA 59.816 36.000 0.00 0.00 0.00 2.69
2706 3552 6.127479 TGCCACAACTTACTTTGAACTTTGAT 60.127 34.615 0.00 0.00 0.00 2.57
2707 3553 7.067615 TGCCACAACTTACTTTGAACTTTGATA 59.932 33.333 0.00 0.00 0.00 2.15
2708 3554 8.082242 GCCACAACTTACTTTGAACTTTGATAT 58.918 33.333 0.00 0.00 0.00 1.63
2709 3555 9.965824 CCACAACTTACTTTGAACTTTGATATT 57.034 29.630 0.00 0.00 0.00 1.28
2718 3564 9.533253 ACTTTGAACTTTGATATTTTTCTGGTG 57.467 29.630 0.00 0.00 0.00 4.17
2719 3565 7.945033 TTGAACTTTGATATTTTTCTGGTGC 57.055 32.000 0.00 0.00 0.00 5.01
2720 3566 6.454795 TGAACTTTGATATTTTTCTGGTGCC 58.545 36.000 0.00 0.00 0.00 5.01
2721 3567 6.041409 TGAACTTTGATATTTTTCTGGTGCCA 59.959 34.615 0.00 0.00 0.00 4.92
2722 3568 5.783111 ACTTTGATATTTTTCTGGTGCCAC 58.217 37.500 0.00 0.00 0.00 5.01
2723 3569 4.799564 TTGATATTTTTCTGGTGCCACC 57.200 40.909 7.01 7.01 39.22 4.61
2724 3570 3.096092 TGATATTTTTCTGGTGCCACCC 58.904 45.455 12.25 0.00 37.50 4.61
2725 3571 2.990740 TATTTTTCTGGTGCCACCCT 57.009 45.000 12.25 0.00 37.50 4.34
2726 3572 2.101640 ATTTTTCTGGTGCCACCCTT 57.898 45.000 12.25 0.00 37.50 3.95
2727 3573 1.872773 TTTTTCTGGTGCCACCCTTT 58.127 45.000 12.25 0.00 37.50 3.11
2728 3574 2.757894 TTTTCTGGTGCCACCCTTTA 57.242 45.000 12.25 0.00 37.50 1.85
2729 3575 1.989706 TTTCTGGTGCCACCCTTTAC 58.010 50.000 12.25 0.00 37.50 2.01
2730 3576 1.145571 TTCTGGTGCCACCCTTTACT 58.854 50.000 12.25 0.00 37.50 2.24
2731 3577 1.145571 TCTGGTGCCACCCTTTACTT 58.854 50.000 12.25 0.00 37.50 2.24
2732 3578 1.202879 TCTGGTGCCACCCTTTACTTG 60.203 52.381 12.25 0.00 37.50 3.16
2733 3579 0.178975 TGGTGCCACCCTTTACTTGG 60.179 55.000 12.25 0.00 37.50 3.61
2734 3580 0.111639 GGTGCCACCCTTTACTTGGA 59.888 55.000 1.17 0.00 31.39 3.53
2735 3581 1.479757 GGTGCCACCCTTTACTTGGAA 60.480 52.381 1.17 0.00 31.39 3.53
2736 3582 2.525368 GTGCCACCCTTTACTTGGAAT 58.475 47.619 0.00 0.00 31.39 3.01
2737 3583 2.897326 GTGCCACCCTTTACTTGGAATT 59.103 45.455 0.00 0.00 31.39 2.17
2738 3584 3.323691 GTGCCACCCTTTACTTGGAATTT 59.676 43.478 0.00 0.00 31.39 1.82
2739 3585 3.970640 TGCCACCCTTTACTTGGAATTTT 59.029 39.130 0.00 0.00 31.39 1.82
2740 3586 4.202305 TGCCACCCTTTACTTGGAATTTTG 60.202 41.667 0.00 0.00 31.39 2.44
2741 3587 4.039852 GCCACCCTTTACTTGGAATTTTGA 59.960 41.667 0.00 0.00 31.39 2.69
2742 3588 5.279960 GCCACCCTTTACTTGGAATTTTGAT 60.280 40.000 0.00 0.00 31.39 2.57
2743 3589 6.071051 GCCACCCTTTACTTGGAATTTTGATA 60.071 38.462 0.00 0.00 31.39 2.15
2744 3590 7.526359 GCCACCCTTTACTTGGAATTTTGATAA 60.526 37.037 0.00 0.00 31.39 1.75
2745 3591 8.539544 CCACCCTTTACTTGGAATTTTGATAAT 58.460 33.333 0.00 0.00 31.39 1.28
2746 3592 9.942850 CACCCTTTACTTGGAATTTTGATAATT 57.057 29.630 0.00 0.00 0.00 1.40
2751 3597 9.784531 TTTACTTGGAATTTTGATAATTTGCCA 57.215 25.926 0.00 0.00 0.00 4.92
2752 3598 9.956640 TTACTTGGAATTTTGATAATTTGCCAT 57.043 25.926 0.00 0.00 0.00 4.40
2753 3599 8.496707 ACTTGGAATTTTGATAATTTGCCATC 57.503 30.769 0.00 0.00 0.00 3.51
2754 3600 8.323567 ACTTGGAATTTTGATAATTTGCCATCT 58.676 29.630 0.00 0.00 0.00 2.90
2755 3601 8.495361 TTGGAATTTTGATAATTTGCCATCTG 57.505 30.769 0.00 0.00 0.00 2.90
2756 3602 7.622713 TGGAATTTTGATAATTTGCCATCTGT 58.377 30.769 0.00 0.00 0.00 3.41
2757 3603 7.765360 TGGAATTTTGATAATTTGCCATCTGTC 59.235 33.333 0.00 0.00 0.00 3.51
2758 3604 7.043192 GGAATTTTGATAATTTGCCATCTGTCG 60.043 37.037 0.00 0.00 0.00 4.35
2759 3605 4.898829 TTGATAATTTGCCATCTGTCGG 57.101 40.909 0.00 0.00 0.00 4.79
2760 3606 3.884895 TGATAATTTGCCATCTGTCGGT 58.115 40.909 0.00 0.00 0.00 4.69
2761 3607 4.269183 TGATAATTTGCCATCTGTCGGTT 58.731 39.130 0.00 0.00 0.00 4.44
2762 3608 4.096231 TGATAATTTGCCATCTGTCGGTTG 59.904 41.667 0.00 0.00 0.00 3.77
2763 3609 1.176527 ATTTGCCATCTGTCGGTTGG 58.823 50.000 4.57 4.57 37.73 3.77
2764 3610 0.893270 TTTGCCATCTGTCGGTTGGG 60.893 55.000 10.25 0.00 35.80 4.12
2765 3611 3.134127 GCCATCTGTCGGTTGGGC 61.134 66.667 10.25 3.63 35.80 5.36
2766 3612 2.438434 CCATCTGTCGGTTGGGCC 60.438 66.667 0.00 0.00 32.59 5.80
2767 3613 2.438434 CATCTGTCGGTTGGGCCC 60.438 66.667 17.59 17.59 0.00 5.80
2768 3614 3.728373 ATCTGTCGGTTGGGCCCC 61.728 66.667 22.27 3.89 0.00 5.80
2775 3621 3.909651 GGTTGGGCCCCACAGGAA 61.910 66.667 26.40 7.13 38.24 3.36
2776 3622 2.200092 GTTGGGCCCCACAGGAAA 59.800 61.111 22.27 0.75 38.24 3.13
2777 3623 1.458588 GTTGGGCCCCACAGGAAAA 60.459 57.895 22.27 0.00 38.24 2.29
2778 3624 1.152355 TTGGGCCCCACAGGAAAAG 60.152 57.895 22.27 0.00 38.24 2.27
2779 3625 1.955458 TTGGGCCCCACAGGAAAAGT 61.955 55.000 22.27 0.00 38.24 2.66
2780 3626 1.606601 GGGCCCCACAGGAAAAGTC 60.607 63.158 12.23 0.00 38.24 3.01
2781 3627 1.606601 GGCCCCACAGGAAAAGTCC 60.607 63.158 0.00 0.00 45.35 3.85
2794 3640 4.566004 GGAAAAGTCCAAAATACCCTTGC 58.434 43.478 0.00 0.00 44.26 4.01
2795 3641 4.562757 GGAAAAGTCCAAAATACCCTTGCC 60.563 45.833 0.00 0.00 44.26 4.52
2796 3642 1.834188 AGTCCAAAATACCCTTGCCG 58.166 50.000 0.00 0.00 0.00 5.69
2797 3643 1.074889 AGTCCAAAATACCCTTGCCGT 59.925 47.619 0.00 0.00 0.00 5.68
2798 3644 1.890489 GTCCAAAATACCCTTGCCGTT 59.110 47.619 0.00 0.00 0.00 4.44
2799 3645 2.094906 GTCCAAAATACCCTTGCCGTTC 60.095 50.000 0.00 0.00 0.00 3.95
2800 3646 1.135517 CCAAAATACCCTTGCCGTTCG 60.136 52.381 0.00 0.00 0.00 3.95
2801 3647 1.807742 CAAAATACCCTTGCCGTTCGA 59.192 47.619 0.00 0.00 0.00 3.71
2802 3648 2.413310 AAATACCCTTGCCGTTCGAT 57.587 45.000 0.00 0.00 0.00 3.59
2803 3649 2.413310 AATACCCTTGCCGTTCGATT 57.587 45.000 0.00 0.00 0.00 3.34
2804 3650 1.663695 ATACCCTTGCCGTTCGATTG 58.336 50.000 0.00 0.00 0.00 2.67
2805 3651 0.609151 TACCCTTGCCGTTCGATTGA 59.391 50.000 0.00 0.00 0.00 2.57
2806 3652 0.953960 ACCCTTGCCGTTCGATTGAC 60.954 55.000 0.00 0.00 0.00 3.18
2807 3653 1.644786 CCCTTGCCGTTCGATTGACC 61.645 60.000 0.00 0.00 0.00 4.02
2808 3654 0.953471 CCTTGCCGTTCGATTGACCA 60.953 55.000 0.00 0.00 0.00 4.02
2809 3655 0.443869 CTTGCCGTTCGATTGACCAG 59.556 55.000 0.00 0.00 0.00 4.00
2810 3656 0.953471 TTGCCGTTCGATTGACCAGG 60.953 55.000 0.00 0.00 0.00 4.45
2811 3657 1.079405 GCCGTTCGATTGACCAGGA 60.079 57.895 0.00 0.00 0.00 3.86
2812 3658 1.359459 GCCGTTCGATTGACCAGGAC 61.359 60.000 0.00 0.00 0.00 3.85
2813 3659 1.076533 CCGTTCGATTGACCAGGACG 61.077 60.000 0.00 0.00 0.00 4.79
2814 3660 1.076533 CGTTCGATTGACCAGGACGG 61.077 60.000 0.00 0.00 42.50 4.79
2815 3661 0.739813 GTTCGATTGACCAGGACGGG 60.740 60.000 0.00 0.00 40.22 5.28
2816 3662 0.901114 TTCGATTGACCAGGACGGGA 60.901 55.000 0.00 0.00 40.22 5.14
2817 3663 1.141881 CGATTGACCAGGACGGGAG 59.858 63.158 0.00 0.00 40.22 4.30
2818 3664 1.320344 CGATTGACCAGGACGGGAGA 61.320 60.000 0.00 0.00 40.22 3.71
2819 3665 0.461961 GATTGACCAGGACGGGAGAG 59.538 60.000 0.00 0.00 40.22 3.20
2820 3666 0.041238 ATTGACCAGGACGGGAGAGA 59.959 55.000 0.00 0.00 40.22 3.10
2821 3667 0.178944 TTGACCAGGACGGGAGAGAA 60.179 55.000 0.00 0.00 40.22 2.87
2822 3668 0.612174 TGACCAGGACGGGAGAGAAG 60.612 60.000 0.00 0.00 40.22 2.85
2823 3669 1.950973 GACCAGGACGGGAGAGAAGC 61.951 65.000 0.00 0.00 40.22 3.86
2824 3670 1.684049 CCAGGACGGGAGAGAAGCT 60.684 63.158 0.00 0.00 0.00 3.74
2825 3671 1.671901 CCAGGACGGGAGAGAAGCTC 61.672 65.000 0.00 0.00 43.17 4.09
2826 3672 0.682855 CAGGACGGGAGAGAAGCTCT 60.683 60.000 0.00 0.00 44.28 4.09
2835 3681 2.172534 GAGAAGCTCTCGGTCGTCA 58.827 57.895 0.00 0.00 33.35 4.35
2836 3682 0.736053 GAGAAGCTCTCGGTCGTCAT 59.264 55.000 0.00 0.00 33.35 3.06
2837 3683 1.133407 GAGAAGCTCTCGGTCGTCATT 59.867 52.381 0.00 0.00 33.35 2.57
2838 3684 1.133407 AGAAGCTCTCGGTCGTCATTC 59.867 52.381 0.00 0.00 0.00 2.67
2839 3685 1.133407 GAAGCTCTCGGTCGTCATTCT 59.867 52.381 0.00 0.00 0.00 2.40
2840 3686 0.736053 AGCTCTCGGTCGTCATTCTC 59.264 55.000 0.00 0.00 0.00 2.87
2841 3687 0.452184 GCTCTCGGTCGTCATTCTCA 59.548 55.000 0.00 0.00 0.00 3.27
2842 3688 1.066303 GCTCTCGGTCGTCATTCTCAT 59.934 52.381 0.00 0.00 0.00 2.90
2843 3689 2.856720 GCTCTCGGTCGTCATTCTCATC 60.857 54.545 0.00 0.00 0.00 2.92
2844 3690 1.676529 TCTCGGTCGTCATTCTCATCC 59.323 52.381 0.00 0.00 0.00 3.51
2845 3691 0.744874 TCGGTCGTCATTCTCATCCC 59.255 55.000 0.00 0.00 0.00 3.85
2846 3692 0.249489 CGGTCGTCATTCTCATCCCC 60.249 60.000 0.00 0.00 0.00 4.81
2847 3693 1.123928 GGTCGTCATTCTCATCCCCT 58.876 55.000 0.00 0.00 0.00 4.79
2848 3694 1.486726 GGTCGTCATTCTCATCCCCTT 59.513 52.381 0.00 0.00 0.00 3.95
2849 3695 2.483889 GGTCGTCATTCTCATCCCCTTC 60.484 54.545 0.00 0.00 0.00 3.46
2850 3696 2.432510 GTCGTCATTCTCATCCCCTTCT 59.567 50.000 0.00 0.00 0.00 2.85
2851 3697 2.695666 TCGTCATTCTCATCCCCTTCTC 59.304 50.000 0.00 0.00 0.00 2.87
2852 3698 2.697751 CGTCATTCTCATCCCCTTCTCT 59.302 50.000 0.00 0.00 0.00 3.10
2853 3699 3.243704 CGTCATTCTCATCCCCTTCTCTC 60.244 52.174 0.00 0.00 0.00 3.20
2854 3700 2.961741 TCATTCTCATCCCCTTCTCTCG 59.038 50.000 0.00 0.00 0.00 4.04
2855 3701 1.115467 TTCTCATCCCCTTCTCTCGC 58.885 55.000 0.00 0.00 0.00 5.03
2856 3702 0.757188 TCTCATCCCCTTCTCTCGCC 60.757 60.000 0.00 0.00 0.00 5.54
2857 3703 1.753368 CTCATCCCCTTCTCTCGCCC 61.753 65.000 0.00 0.00 0.00 6.13
2858 3704 2.446802 ATCCCCTTCTCTCGCCCC 60.447 66.667 0.00 0.00 0.00 5.80
2859 3705 4.798682 TCCCCTTCTCTCGCCCCC 62.799 72.222 0.00 0.00 0.00 5.40
2861 3707 3.474570 CCCTTCTCTCGCCCCCAG 61.475 72.222 0.00 0.00 0.00 4.45
2862 3708 2.364317 CCTTCTCTCGCCCCCAGA 60.364 66.667 0.00 0.00 0.00 3.86
2863 3709 2.430610 CCTTCTCTCGCCCCCAGAG 61.431 68.421 0.00 0.00 39.11 3.35
2864 3710 1.380515 CTTCTCTCGCCCCCAGAGA 60.381 63.158 0.00 0.00 43.88 3.10
2865 3711 0.758685 CTTCTCTCGCCCCCAGAGAT 60.759 60.000 2.00 0.00 44.72 2.75
2866 3712 1.045350 TTCTCTCGCCCCCAGAGATG 61.045 60.000 2.00 0.00 44.72 2.90
2867 3713 2.444706 TCTCGCCCCCAGAGATGG 60.445 66.667 0.00 0.00 39.57 3.51
2868 3714 4.247380 CTCGCCCCCAGAGATGGC 62.247 72.222 0.00 0.00 41.85 4.40
2870 3716 4.113815 CGCCCCCAGAGATGGCAA 62.114 66.667 0.00 0.00 45.63 4.52
2871 3717 2.123982 GCCCCCAGAGATGGCAAG 60.124 66.667 0.00 0.00 44.70 4.01
2872 3718 2.683465 GCCCCCAGAGATGGCAAGA 61.683 63.158 0.00 0.00 44.70 3.02
2873 3719 1.530771 CCCCCAGAGATGGCAAGAG 59.469 63.158 0.00 0.00 0.00 2.85
2874 3720 1.530771 CCCCAGAGATGGCAAGAGG 59.469 63.158 0.00 0.00 0.00 3.69
2875 3721 1.530771 CCCAGAGATGGCAAGAGGG 59.469 63.158 0.00 0.00 0.00 4.30
2876 3722 1.153005 CCAGAGATGGCAAGAGGGC 60.153 63.158 0.00 0.00 43.73 5.19
2897 3743 3.126225 GGCTCCTCGACGACGACT 61.126 66.667 5.75 0.00 43.81 4.18
2898 3744 2.400402 GCTCCTCGACGACGACTC 59.600 66.667 5.75 0.00 43.81 3.36
2899 3745 2.389020 GCTCCTCGACGACGACTCA 61.389 63.158 5.75 0.00 43.81 3.41
2900 3746 1.420702 CTCCTCGACGACGACTCAC 59.579 63.158 5.75 0.00 43.81 3.51
2901 3747 2.096030 CCTCGACGACGACTCACG 59.904 66.667 5.75 0.00 43.81 4.35
2902 3748 2.571096 CTCGACGACGACTCACGC 60.571 66.667 5.75 0.00 46.94 5.34
2903 3749 3.012936 CTCGACGACGACTCACGCT 62.013 63.158 5.75 0.00 46.94 5.07
2904 3750 2.127345 CGACGACGACTCACGCTT 60.127 61.111 0.00 0.00 46.94 4.68
2905 3751 2.418333 CGACGACGACTCACGCTTG 61.418 63.158 0.00 0.00 46.94 4.01
2906 3752 2.708059 GACGACGACTCACGCTTGC 61.708 63.158 0.00 0.00 46.94 4.01
2907 3753 2.729491 CGACGACTCACGCTTGCA 60.729 61.111 0.00 0.00 46.94 4.08
2908 3754 2.846918 GACGACTCACGCTTGCAC 59.153 61.111 0.00 0.00 46.94 4.57
2909 3755 2.658707 GACGACTCACGCTTGCACC 61.659 63.158 0.00 0.00 46.94 5.01
2910 3756 2.356313 CGACTCACGCTTGCACCT 60.356 61.111 0.00 0.00 34.51 4.00
2911 3757 2.375766 CGACTCACGCTTGCACCTC 61.376 63.158 0.00 0.00 34.51 3.85
2912 3758 1.005630 GACTCACGCTTGCACCTCT 60.006 57.895 0.00 0.00 0.00 3.69
2913 3759 0.243907 GACTCACGCTTGCACCTCTA 59.756 55.000 0.00 0.00 0.00 2.43
2914 3760 0.038159 ACTCACGCTTGCACCTCTAC 60.038 55.000 0.00 0.00 0.00 2.59
2915 3761 0.737715 CTCACGCTTGCACCTCTACC 60.738 60.000 0.00 0.00 0.00 3.18
2916 3762 1.005037 CACGCTTGCACCTCTACCA 60.005 57.895 0.00 0.00 0.00 3.25
2917 3763 0.391661 CACGCTTGCACCTCTACCAT 60.392 55.000 0.00 0.00 0.00 3.55
2918 3764 0.391661 ACGCTTGCACCTCTACCATG 60.392 55.000 0.00 0.00 0.00 3.66
2919 3765 0.108186 CGCTTGCACCTCTACCATGA 60.108 55.000 0.00 0.00 0.00 3.07
2920 3766 1.661341 GCTTGCACCTCTACCATGAG 58.339 55.000 0.00 0.00 0.00 2.90
2926 3772 2.607811 CCTCTACCATGAGGCACCA 58.392 57.895 0.00 0.00 45.84 4.17
2927 3773 0.179000 CCTCTACCATGAGGCACCAC 59.821 60.000 0.00 0.00 45.84 4.16
2928 3774 0.904649 CTCTACCATGAGGCACCACA 59.095 55.000 0.00 0.00 39.06 4.17
2929 3775 0.613260 TCTACCATGAGGCACCACAC 59.387 55.000 0.00 0.00 39.06 3.82
2930 3776 0.615331 CTACCATGAGGCACCACACT 59.385 55.000 0.00 0.00 39.06 3.55
2931 3777 0.324614 TACCATGAGGCACCACACTG 59.675 55.000 0.00 0.00 39.06 3.66
2932 3778 1.676635 CCATGAGGCACCACACTGG 60.677 63.158 0.00 0.00 45.02 4.00
2933 3779 1.376086 CATGAGGCACCACACTGGA 59.624 57.895 0.00 0.00 40.96 3.86
2934 3780 0.034767 CATGAGGCACCACACTGGAT 60.035 55.000 0.00 0.00 40.96 3.41
2935 3781 0.254178 ATGAGGCACCACACTGGATC 59.746 55.000 0.00 0.00 40.96 3.36
2936 3782 1.078143 GAGGCACCACACTGGATCC 60.078 63.158 4.20 4.20 40.96 3.36
2937 3783 2.436646 GGCACCACACTGGATCCG 60.437 66.667 7.39 4.62 40.96 4.18
2938 3784 3.127533 GCACCACACTGGATCCGC 61.128 66.667 7.39 0.00 40.96 5.54
2939 3785 2.815211 CACCACACTGGATCCGCG 60.815 66.667 7.39 0.00 40.96 6.46
2940 3786 4.082523 ACCACACTGGATCCGCGG 62.083 66.667 22.12 22.12 40.96 6.46
2941 3787 4.838152 CCACACTGGATCCGCGGG 62.838 72.222 27.83 11.50 40.96 6.13
2942 3788 4.082523 CACACTGGATCCGCGGGT 62.083 66.667 27.83 21.57 0.00 5.28
2943 3789 4.082523 ACACTGGATCCGCGGGTG 62.083 66.667 27.83 25.63 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093447 AGAAATGTCTAACAGCTCCGGG 60.093 50.000 0.00 0.00 29.93 5.73
1 2 3.118956 AGAGAAATGTCTAACAGCTCCGG 60.119 47.826 0.00 0.00 32.80 5.14
2 3 4.116747 AGAGAAATGTCTAACAGCTCCG 57.883 45.455 0.00 0.00 32.80 4.63
3 4 8.417884 ACTAATAGAGAAATGTCTAACAGCTCC 58.582 37.037 0.00 0.00 32.80 4.70
19 20 9.976511 CGTGGAAATAATGGTTACTAATAGAGA 57.023 33.333 0.00 0.00 0.00 3.10
20 21 9.760077 ACGTGGAAATAATGGTTACTAATAGAG 57.240 33.333 0.00 0.00 0.00 2.43
21 22 9.754382 GACGTGGAAATAATGGTTACTAATAGA 57.246 33.333 0.00 0.00 0.00 1.98
28 29 3.619929 AGCGACGTGGAAATAATGGTTAC 59.380 43.478 0.11 0.00 0.00 2.50
35 36 3.057386 TGACTGTAGCGACGTGGAAATAA 60.057 43.478 0.11 0.00 0.00 1.40
48 49 6.428385 AATTTTCATAGCTGTGACTGTAGC 57.572 37.500 13.30 0.00 40.18 3.58
227 233 6.710744 AGTTCACGGAAATGACTTCTATGTTT 59.289 34.615 0.00 0.00 34.17 2.83
249 255 8.762481 AGATTTTAATTATAAGGCGGGAAGTT 57.238 30.769 0.00 0.00 0.00 2.66
290 296 3.795488 GCAAGGAAAACTTGGAAAGGTCG 60.795 47.826 8.92 0.00 43.11 4.79
466 865 3.724374 TGTCGTGGTTTTAGTTCAGAGG 58.276 45.455 0.00 0.00 0.00 3.69
467 866 5.047847 TCTTGTCGTGGTTTTAGTTCAGAG 58.952 41.667 0.00 0.00 0.00 3.35
471 870 7.749126 CCATAATTCTTGTCGTGGTTTTAGTTC 59.251 37.037 0.00 0.00 0.00 3.01
480 879 5.416083 TCTGTACCATAATTCTTGTCGTGG 58.584 41.667 0.00 0.00 0.00 4.94
496 895 6.550163 TGGATATAGTTACTCCCTCTGTACC 58.450 44.000 0.00 0.00 0.00 3.34
498 897 8.233349 AGATGGATATAGTTACTCCCTCTGTA 57.767 38.462 0.00 0.00 34.14 2.74
501 900 7.350044 TGAGATGGATATAGTTACTCCCTCT 57.650 40.000 0.00 0.00 36.93 3.69
589 994 9.447157 CCACCAATTTTCAAACCACATAATATT 57.553 29.630 0.00 0.00 0.00 1.28
590 995 8.601546 ACCACCAATTTTCAAACCACATAATAT 58.398 29.630 0.00 0.00 0.00 1.28
653 1342 6.762187 TCACTGTTCAAAAACGTCCTACATTA 59.238 34.615 0.00 0.00 38.28 1.90
702 1428 6.031751 ACTGTCTTCACTCTTCAGGAATAC 57.968 41.667 0.00 0.00 0.00 1.89
751 1488 7.094634 ACACGGAATAATGCATATGGAGAATTC 60.095 37.037 18.43 18.43 0.00 2.17
818 1557 8.909671 CATCTGCTTACTTTTCAACAGAAAATC 58.090 33.333 4.11 0.00 39.68 2.17
968 1767 2.875933 TGTTACTCCTGCTTTTGTTCGG 59.124 45.455 0.00 0.00 0.00 4.30
972 1771 4.441495 GGCTTTTGTTACTCCTGCTTTTGT 60.441 41.667 0.00 0.00 0.00 2.83
974 1773 3.704061 TGGCTTTTGTTACTCCTGCTTTT 59.296 39.130 0.00 0.00 0.00 2.27
975 1774 3.068165 GTGGCTTTTGTTACTCCTGCTTT 59.932 43.478 0.00 0.00 0.00 3.51
976 1775 2.623416 GTGGCTTTTGTTACTCCTGCTT 59.377 45.455 0.00 0.00 0.00 3.91
977 1776 2.230660 GTGGCTTTTGTTACTCCTGCT 58.769 47.619 0.00 0.00 0.00 4.24
978 1777 1.269723 GGTGGCTTTTGTTACTCCTGC 59.730 52.381 0.00 0.00 0.00 4.85
1041 1846 0.676736 GTAGATGGAGGGCGAGGAAG 59.323 60.000 0.00 0.00 0.00 3.46
1116 1921 2.758327 AGGGCGCCGATGTAGTCA 60.758 61.111 22.54 0.00 0.00 3.41
1401 2206 2.525629 TTGCGGACCCAGGAGTCA 60.526 61.111 9.54 0.00 38.59 3.41
1434 2239 2.969238 CGCTGGATGATGCCGGTC 60.969 66.667 1.90 0.00 36.65 4.79
1809 2614 2.031516 CAGAGTCCGGCAAGCACTG 61.032 63.158 0.00 0.00 0.00 3.66
2005 2810 5.184864 ACCAACAATTAAAATCGGATGCTCA 59.815 36.000 0.00 0.00 0.00 4.26
2046 2859 9.361315 ACGTACATTTTCCAATAATTTTAAGCC 57.639 29.630 0.00 0.00 0.00 4.35
2114 2935 6.151049 AGGAAGGGCTAGAAAGTTATGGATA 58.849 40.000 0.00 0.00 0.00 2.59
2160 2982 6.037281 GGGTCGAAGAATAGATTGGAAGTTTC 59.963 42.308 0.00 0.00 39.69 2.78
2185 3007 8.882415 TTCTGTGTTCTTTGTACTACCTTAAG 57.118 34.615 0.00 0.00 0.00 1.85
2235 3058 5.186198 GCTTGTAATCATCACTAGGTGGTT 58.814 41.667 0.00 0.00 33.87 3.67
2245 3068 3.054875 AGCTCCAGTGCTTGTAATCATCA 60.055 43.478 0.00 0.00 40.93 3.07
2248 3071 3.679917 GCTAGCTCCAGTGCTTGTAATCA 60.680 47.826 7.70 0.00 43.74 2.57
2251 3074 1.902508 AGCTAGCTCCAGTGCTTGTAA 59.097 47.619 12.68 0.00 43.74 2.41
2339 3181 2.231721 GGGTCTTAGCACGAGAACTTCT 59.768 50.000 0.00 0.00 31.47 2.85
2346 3188 0.249073 CCATCGGGTCTTAGCACGAG 60.249 60.000 7.05 0.00 38.85 4.18
2361 3203 0.107703 TCTGATGCGTTGGTCCCATC 60.108 55.000 0.21 0.21 36.71 3.51
2415 3257 4.020218 CTGTCTACAGGTTGGATTCTTCCA 60.020 45.833 2.01 0.00 43.93 3.53
2421 3263 3.162666 TCGTCTGTCTACAGGTTGGATT 58.837 45.455 10.11 0.00 43.91 3.01
2492 3338 2.123468 TCCGGCGGATCTCATGGA 60.123 61.111 27.46 0.00 0.00 3.41
2512 3358 1.073548 GGGGGCGTGTGAAGGTTTA 59.926 57.895 0.00 0.00 0.00 2.01
2529 3375 2.271800 GGTGTTTCTAGCATCGTCAGG 58.728 52.381 0.00 0.00 0.00 3.86
2554 3400 3.587506 TCTTTTCTGCCTAGCCCTAGTTT 59.412 43.478 1.99 0.00 0.00 2.66
2559 3405 0.621082 GGTCTTTTCTGCCTAGCCCT 59.379 55.000 0.00 0.00 0.00 5.19
2569 3415 6.500751 TCTGTAGGTGGAATAAGGTCTTTTCT 59.499 38.462 0.00 0.00 0.00 2.52
2571 3417 6.500751 TCTCTGTAGGTGGAATAAGGTCTTTT 59.499 38.462 0.00 0.00 0.00 2.27
2572 3418 6.023603 TCTCTGTAGGTGGAATAAGGTCTTT 58.976 40.000 0.00 0.00 0.00 2.52
2574 3420 5.205056 CTCTCTGTAGGTGGAATAAGGTCT 58.795 45.833 0.00 0.00 0.00 3.85
2619 3465 2.092103 TGTTAGGGTTTGTGTCCTGCTT 60.092 45.455 0.00 0.00 34.75 3.91
2664 3510 4.776837 TGTGGCAAATAATCACAAATCCCT 59.223 37.500 0.00 0.00 38.30 4.20
2665 3511 5.083533 TGTGGCAAATAATCACAAATCCC 57.916 39.130 0.00 0.00 38.30 3.85
2670 3516 7.283625 AGTAAGTTGTGGCAAATAATCACAA 57.716 32.000 4.30 4.30 45.47 3.33
2671 3517 6.892658 AGTAAGTTGTGGCAAATAATCACA 57.107 33.333 0.00 0.00 39.31 3.58
2672 3518 7.865385 TCAAAGTAAGTTGTGGCAAATAATCAC 59.135 33.333 0.00 0.00 0.00 3.06
2673 3519 7.946207 TCAAAGTAAGTTGTGGCAAATAATCA 58.054 30.769 0.00 0.00 0.00 2.57
2674 3520 8.699749 GTTCAAAGTAAGTTGTGGCAAATAATC 58.300 33.333 0.00 0.00 0.00 1.75
2675 3521 8.421002 AGTTCAAAGTAAGTTGTGGCAAATAAT 58.579 29.630 0.00 0.00 0.00 1.28
2676 3522 7.777095 AGTTCAAAGTAAGTTGTGGCAAATAA 58.223 30.769 0.00 0.00 0.00 1.40
2677 3523 7.341445 AGTTCAAAGTAAGTTGTGGCAAATA 57.659 32.000 0.00 0.00 0.00 1.40
2678 3524 6.220726 AGTTCAAAGTAAGTTGTGGCAAAT 57.779 33.333 0.00 0.00 0.00 2.32
2679 3525 5.652994 AGTTCAAAGTAAGTTGTGGCAAA 57.347 34.783 0.00 0.00 0.00 3.68
2680 3526 5.652994 AAGTTCAAAGTAAGTTGTGGCAA 57.347 34.783 0.00 0.00 0.00 4.52
2681 3527 5.184096 TCAAAGTTCAAAGTAAGTTGTGGCA 59.816 36.000 0.00 0.00 0.00 4.92
2682 3528 5.646606 TCAAAGTTCAAAGTAAGTTGTGGC 58.353 37.500 0.00 0.00 0.00 5.01
2683 3529 9.965824 AATATCAAAGTTCAAAGTAAGTTGTGG 57.034 29.630 0.00 0.00 0.00 4.17
2692 3538 9.533253 CACCAGAAAAATATCAAAGTTCAAAGT 57.467 29.630 0.00 0.00 0.00 2.66
2693 3539 8.490355 GCACCAGAAAAATATCAAAGTTCAAAG 58.510 33.333 0.00 0.00 0.00 2.77
2694 3540 7.440856 GGCACCAGAAAAATATCAAAGTTCAAA 59.559 33.333 0.00 0.00 0.00 2.69
2695 3541 6.928492 GGCACCAGAAAAATATCAAAGTTCAA 59.072 34.615 0.00 0.00 0.00 2.69
2696 3542 6.041409 TGGCACCAGAAAAATATCAAAGTTCA 59.959 34.615 0.00 0.00 0.00 3.18
2697 3543 6.366061 GTGGCACCAGAAAAATATCAAAGTTC 59.634 38.462 6.29 0.00 0.00 3.01
2698 3544 6.223120 GTGGCACCAGAAAAATATCAAAGTT 58.777 36.000 6.29 0.00 0.00 2.66
2699 3545 5.279456 GGTGGCACCAGAAAAATATCAAAGT 60.279 40.000 31.26 0.00 38.42 2.66
2700 3546 5.170748 GGTGGCACCAGAAAAATATCAAAG 58.829 41.667 31.26 0.00 38.42 2.77
2701 3547 4.020662 GGGTGGCACCAGAAAAATATCAAA 60.021 41.667 35.69 0.00 41.02 2.69
2702 3548 3.513515 GGGTGGCACCAGAAAAATATCAA 59.486 43.478 35.69 0.00 41.02 2.57
2703 3549 3.096092 GGGTGGCACCAGAAAAATATCA 58.904 45.455 35.69 0.00 41.02 2.15
2704 3550 3.365472 AGGGTGGCACCAGAAAAATATC 58.635 45.455 35.69 15.64 41.02 1.63
2705 3551 3.473113 AGGGTGGCACCAGAAAAATAT 57.527 42.857 35.69 8.61 41.02 1.28
2706 3552 2.990740 AGGGTGGCACCAGAAAAATA 57.009 45.000 35.69 0.00 41.02 1.40
2707 3553 2.101640 AAGGGTGGCACCAGAAAAAT 57.898 45.000 35.69 11.91 41.02 1.82
2708 3554 1.872773 AAAGGGTGGCACCAGAAAAA 58.127 45.000 35.69 0.00 41.02 1.94
2709 3555 2.091555 AGTAAAGGGTGGCACCAGAAAA 60.092 45.455 35.69 15.46 41.02 2.29
2710 3556 1.497286 AGTAAAGGGTGGCACCAGAAA 59.503 47.619 35.69 16.89 41.02 2.52
2711 3557 1.145571 AGTAAAGGGTGGCACCAGAA 58.854 50.000 35.69 16.52 41.02 3.02
2712 3558 1.145571 AAGTAAAGGGTGGCACCAGA 58.854 50.000 35.69 16.03 41.02 3.86
2713 3559 1.247567 CAAGTAAAGGGTGGCACCAG 58.752 55.000 35.69 12.11 41.02 4.00
2714 3560 0.178975 CCAAGTAAAGGGTGGCACCA 60.179 55.000 35.69 14.78 41.02 4.17
2715 3561 0.111639 TCCAAGTAAAGGGTGGCACC 59.888 55.000 28.69 28.69 37.60 5.01
2716 3562 1.989706 TTCCAAGTAAAGGGTGGCAC 58.010 50.000 9.70 9.70 32.10 5.01
2717 3563 2.990740 ATTCCAAGTAAAGGGTGGCA 57.009 45.000 0.00 0.00 32.10 4.92
2718 3564 4.039852 TCAAAATTCCAAGTAAAGGGTGGC 59.960 41.667 0.00 0.00 32.10 5.01
2719 3565 5.799827 TCAAAATTCCAAGTAAAGGGTGG 57.200 39.130 0.00 0.00 0.00 4.61
2720 3566 9.942850 AATTATCAAAATTCCAAGTAAAGGGTG 57.057 29.630 0.00 0.00 0.00 4.61
2725 3571 9.784531 TGGCAAATTATCAAAATTCCAAGTAAA 57.215 25.926 0.00 0.00 0.00 2.01
2726 3572 9.956640 ATGGCAAATTATCAAAATTCCAAGTAA 57.043 25.926 0.00 0.00 0.00 2.24
2727 3573 9.598517 GATGGCAAATTATCAAAATTCCAAGTA 57.401 29.630 0.00 0.00 0.00 2.24
2728 3574 8.323567 AGATGGCAAATTATCAAAATTCCAAGT 58.676 29.630 0.00 0.00 0.00 3.16
2729 3575 8.609176 CAGATGGCAAATTATCAAAATTCCAAG 58.391 33.333 0.00 0.00 0.00 3.61
2730 3576 8.102047 ACAGATGGCAAATTATCAAAATTCCAA 58.898 29.630 0.00 0.00 0.00 3.53
2731 3577 7.622713 ACAGATGGCAAATTATCAAAATTCCA 58.377 30.769 0.00 0.00 0.00 3.53
2732 3578 7.043192 CGACAGATGGCAAATTATCAAAATTCC 60.043 37.037 0.00 0.00 0.00 3.01
2733 3579 7.043192 CCGACAGATGGCAAATTATCAAAATTC 60.043 37.037 0.00 0.00 0.00 2.17
2734 3580 6.757947 CCGACAGATGGCAAATTATCAAAATT 59.242 34.615 0.00 0.00 0.00 1.82
2735 3581 6.127366 ACCGACAGATGGCAAATTATCAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
2736 3582 5.184864 ACCGACAGATGGCAAATTATCAAAA 59.815 36.000 0.00 0.00 0.00 2.44
2737 3583 4.704540 ACCGACAGATGGCAAATTATCAAA 59.295 37.500 0.00 0.00 0.00 2.69
2738 3584 4.269183 ACCGACAGATGGCAAATTATCAA 58.731 39.130 0.00 0.00 0.00 2.57
2739 3585 3.884895 ACCGACAGATGGCAAATTATCA 58.115 40.909 0.00 0.00 0.00 2.15
2740 3586 4.498009 CCAACCGACAGATGGCAAATTATC 60.498 45.833 0.00 0.00 0.00 1.75
2741 3587 3.381272 CCAACCGACAGATGGCAAATTAT 59.619 43.478 0.00 0.00 0.00 1.28
2742 3588 2.752354 CCAACCGACAGATGGCAAATTA 59.248 45.455 0.00 0.00 0.00 1.40
2743 3589 1.545582 CCAACCGACAGATGGCAAATT 59.454 47.619 0.00 0.00 0.00 1.82
2744 3590 1.176527 CCAACCGACAGATGGCAAAT 58.823 50.000 0.00 0.00 0.00 2.32
2745 3591 0.893270 CCCAACCGACAGATGGCAAA 60.893 55.000 0.00 0.00 32.71 3.68
2746 3592 1.303236 CCCAACCGACAGATGGCAA 60.303 57.895 0.00 0.00 32.71 4.52
2747 3593 2.350895 CCCAACCGACAGATGGCA 59.649 61.111 0.00 0.00 32.71 4.92
2748 3594 3.134127 GCCCAACCGACAGATGGC 61.134 66.667 0.00 0.00 32.71 4.40
2749 3595 2.438434 GGCCCAACCGACAGATGG 60.438 66.667 0.00 0.00 0.00 3.51
2750 3596 2.438434 GGGCCCAACCGACAGATG 60.438 66.667 19.95 0.00 40.62 2.90
2751 3597 3.728373 GGGGCCCAACCGACAGAT 61.728 66.667 26.86 0.00 40.62 2.90
2758 3604 2.956077 TTTTCCTGTGGGGCCCAACC 62.956 60.000 30.70 17.37 34.18 3.77
2759 3605 1.458588 TTTTCCTGTGGGGCCCAAC 60.459 57.895 30.70 23.97 34.18 3.77
2760 3606 1.152355 CTTTTCCTGTGGGGCCCAA 60.152 57.895 30.70 10.65 34.18 4.12
2761 3607 2.366153 GACTTTTCCTGTGGGGCCCA 62.366 60.000 24.76 24.76 34.39 5.36
2762 3608 1.606601 GACTTTTCCTGTGGGGCCC 60.607 63.158 18.17 18.17 34.39 5.80
2763 3609 1.606601 GGACTTTTCCTGTGGGGCC 60.607 63.158 0.00 0.00 39.13 5.80
2764 3610 0.469144 TTGGACTTTTCCTGTGGGGC 60.469 55.000 0.00 0.00 43.31 5.80
2765 3611 2.080654 TTTGGACTTTTCCTGTGGGG 57.919 50.000 0.00 0.00 43.31 4.96
2766 3612 4.021456 GGTATTTTGGACTTTTCCTGTGGG 60.021 45.833 0.00 0.00 43.31 4.61
2767 3613 4.021456 GGGTATTTTGGACTTTTCCTGTGG 60.021 45.833 0.00 0.00 43.31 4.17
2768 3614 4.832823 AGGGTATTTTGGACTTTTCCTGTG 59.167 41.667 0.00 0.00 43.31 3.66
2769 3615 5.074746 AGGGTATTTTGGACTTTTCCTGT 57.925 39.130 0.00 0.00 43.31 4.00
2770 3616 5.783111 CAAGGGTATTTTGGACTTTTCCTG 58.217 41.667 0.00 0.00 43.31 3.86
2771 3617 4.283467 GCAAGGGTATTTTGGACTTTTCCT 59.717 41.667 0.00 0.00 43.31 3.36
2772 3618 4.562757 GGCAAGGGTATTTTGGACTTTTCC 60.563 45.833 0.00 0.00 43.19 3.13
2773 3619 4.566004 GGCAAGGGTATTTTGGACTTTTC 58.434 43.478 0.00 0.00 0.00 2.29
2774 3620 3.006430 CGGCAAGGGTATTTTGGACTTTT 59.994 43.478 0.00 0.00 0.00 2.27
2775 3621 2.560981 CGGCAAGGGTATTTTGGACTTT 59.439 45.455 0.00 0.00 0.00 2.66
2776 3622 2.167662 CGGCAAGGGTATTTTGGACTT 58.832 47.619 0.00 0.00 0.00 3.01
2777 3623 1.074889 ACGGCAAGGGTATTTTGGACT 59.925 47.619 0.00 0.00 0.00 3.85
2778 3624 1.541379 ACGGCAAGGGTATTTTGGAC 58.459 50.000 0.00 0.00 0.00 4.02
2779 3625 2.164338 GAACGGCAAGGGTATTTTGGA 58.836 47.619 0.00 0.00 0.00 3.53
2780 3626 1.135517 CGAACGGCAAGGGTATTTTGG 60.136 52.381 0.00 0.00 0.00 3.28
2781 3627 1.807742 TCGAACGGCAAGGGTATTTTG 59.192 47.619 0.00 0.00 0.00 2.44
2782 3628 2.188062 TCGAACGGCAAGGGTATTTT 57.812 45.000 0.00 0.00 0.00 1.82
2783 3629 2.413310 ATCGAACGGCAAGGGTATTT 57.587 45.000 0.00 0.00 0.00 1.40
2784 3630 2.014128 CAATCGAACGGCAAGGGTATT 58.986 47.619 0.00 0.00 0.00 1.89
2785 3631 1.208535 TCAATCGAACGGCAAGGGTAT 59.791 47.619 0.00 0.00 0.00 2.73
2786 3632 0.609151 TCAATCGAACGGCAAGGGTA 59.391 50.000 0.00 0.00 0.00 3.69
2787 3633 0.953960 GTCAATCGAACGGCAAGGGT 60.954 55.000 0.00 0.00 0.00 4.34
2788 3634 1.644786 GGTCAATCGAACGGCAAGGG 61.645 60.000 0.00 0.00 0.00 3.95
2789 3635 0.953471 TGGTCAATCGAACGGCAAGG 60.953 55.000 0.00 0.00 0.00 3.61
2790 3636 0.443869 CTGGTCAATCGAACGGCAAG 59.556 55.000 0.00 0.00 0.00 4.01
2791 3637 0.953471 CCTGGTCAATCGAACGGCAA 60.953 55.000 0.00 0.00 33.45 4.52
2792 3638 1.375396 CCTGGTCAATCGAACGGCA 60.375 57.895 0.00 0.00 33.45 5.69
2793 3639 1.079405 TCCTGGTCAATCGAACGGC 60.079 57.895 0.00 0.00 33.45 5.68
2794 3640 1.076533 CGTCCTGGTCAATCGAACGG 61.077 60.000 0.00 0.00 34.71 4.44
2795 3641 1.076533 CCGTCCTGGTCAATCGAACG 61.077 60.000 0.00 0.00 0.00 3.95
2796 3642 0.739813 CCCGTCCTGGTCAATCGAAC 60.740 60.000 0.00 0.00 35.15 3.95
2797 3643 0.901114 TCCCGTCCTGGTCAATCGAA 60.901 55.000 0.00 0.00 35.15 3.71
2798 3644 1.304630 TCCCGTCCTGGTCAATCGA 60.305 57.895 0.00 0.00 35.15 3.59
2799 3645 1.141881 CTCCCGTCCTGGTCAATCG 59.858 63.158 0.00 0.00 35.15 3.34
2800 3646 0.461961 CTCTCCCGTCCTGGTCAATC 59.538 60.000 0.00 0.00 35.15 2.67
2801 3647 0.041238 TCTCTCCCGTCCTGGTCAAT 59.959 55.000 0.00 0.00 35.15 2.57
2802 3648 0.178944 TTCTCTCCCGTCCTGGTCAA 60.179 55.000 0.00 0.00 35.15 3.18
2803 3649 0.612174 CTTCTCTCCCGTCCTGGTCA 60.612 60.000 0.00 0.00 35.15 4.02
2804 3650 1.950973 GCTTCTCTCCCGTCCTGGTC 61.951 65.000 0.00 0.00 35.15 4.02
2805 3651 1.985116 GCTTCTCTCCCGTCCTGGT 60.985 63.158 0.00 0.00 35.15 4.00
2806 3652 1.671901 GAGCTTCTCTCCCGTCCTGG 61.672 65.000 0.00 0.00 35.77 4.45
2807 3653 0.682855 AGAGCTTCTCTCCCGTCCTG 60.683 60.000 0.00 0.00 42.90 3.86
2808 3654 1.694856 AGAGCTTCTCTCCCGTCCT 59.305 57.895 0.00 0.00 42.90 3.85
2809 3655 4.347865 AGAGCTTCTCTCCCGTCC 57.652 61.111 0.00 0.00 42.90 4.79
2816 3662 0.321741 TGACGACCGAGAGCTTCTCT 60.322 55.000 10.25 0.00 44.28 3.10
2817 3663 0.736053 ATGACGACCGAGAGCTTCTC 59.264 55.000 0.00 0.00 40.06 2.87
2818 3664 1.133407 GAATGACGACCGAGAGCTTCT 59.867 52.381 0.00 0.00 0.00 2.85
2819 3665 1.133407 AGAATGACGACCGAGAGCTTC 59.867 52.381 0.00 0.00 0.00 3.86
2820 3666 1.133407 GAGAATGACGACCGAGAGCTT 59.867 52.381 0.00 0.00 0.00 3.74
2821 3667 0.736053 GAGAATGACGACCGAGAGCT 59.264 55.000 0.00 0.00 0.00 4.09
2822 3668 0.452184 TGAGAATGACGACCGAGAGC 59.548 55.000 0.00 0.00 0.00 4.09
2823 3669 2.287308 GGATGAGAATGACGACCGAGAG 60.287 54.545 0.00 0.00 0.00 3.20
2824 3670 1.676529 GGATGAGAATGACGACCGAGA 59.323 52.381 0.00 0.00 0.00 4.04
2825 3671 1.269309 GGGATGAGAATGACGACCGAG 60.269 57.143 0.00 0.00 0.00 4.63
2826 3672 0.744874 GGGATGAGAATGACGACCGA 59.255 55.000 0.00 0.00 0.00 4.69
2827 3673 0.249489 GGGGATGAGAATGACGACCG 60.249 60.000 0.00 0.00 0.00 4.79
2828 3674 1.123928 AGGGGATGAGAATGACGACC 58.876 55.000 0.00 0.00 0.00 4.79
2829 3675 2.432510 AGAAGGGGATGAGAATGACGAC 59.567 50.000 0.00 0.00 0.00 4.34
2830 3676 2.695666 GAGAAGGGGATGAGAATGACGA 59.304 50.000 0.00 0.00 0.00 4.20
2831 3677 2.697751 AGAGAAGGGGATGAGAATGACG 59.302 50.000 0.00 0.00 0.00 4.35
2832 3678 3.243704 CGAGAGAAGGGGATGAGAATGAC 60.244 52.174 0.00 0.00 0.00 3.06
2833 3679 2.961741 CGAGAGAAGGGGATGAGAATGA 59.038 50.000 0.00 0.00 0.00 2.57
2834 3680 2.547642 GCGAGAGAAGGGGATGAGAATG 60.548 54.545 0.00 0.00 0.00 2.67
2835 3681 1.691434 GCGAGAGAAGGGGATGAGAAT 59.309 52.381 0.00 0.00 0.00 2.40
2836 3682 1.115467 GCGAGAGAAGGGGATGAGAA 58.885 55.000 0.00 0.00 0.00 2.87
2837 3683 0.757188 GGCGAGAGAAGGGGATGAGA 60.757 60.000 0.00 0.00 0.00 3.27
2838 3684 1.745264 GGCGAGAGAAGGGGATGAG 59.255 63.158 0.00 0.00 0.00 2.90
2839 3685 1.762460 GGGCGAGAGAAGGGGATGA 60.762 63.158 0.00 0.00 0.00 2.92
2840 3686 2.812619 GGGGCGAGAGAAGGGGATG 61.813 68.421 0.00 0.00 0.00 3.51
2841 3687 2.446802 GGGGCGAGAGAAGGGGAT 60.447 66.667 0.00 0.00 0.00 3.85
2842 3688 4.798682 GGGGGCGAGAGAAGGGGA 62.799 72.222 0.00 0.00 0.00 4.81
2844 3690 3.474570 CTGGGGGCGAGAGAAGGG 61.475 72.222 0.00 0.00 0.00 3.95
2845 3691 2.364317 TCTGGGGGCGAGAGAAGG 60.364 66.667 0.00 0.00 0.00 3.46
2846 3692 0.758685 ATCTCTGGGGGCGAGAGAAG 60.759 60.000 11.96 0.00 45.49 2.85
2847 3693 1.045350 CATCTCTGGGGGCGAGAGAA 61.045 60.000 11.96 0.00 45.49 2.87
2848 3694 1.456518 CATCTCTGGGGGCGAGAGA 60.457 63.158 10.74 10.74 46.16 3.10
2849 3695 2.506061 CCATCTCTGGGGGCGAGAG 61.506 68.421 0.00 0.00 40.53 3.20
2850 3696 2.444706 CCATCTCTGGGGGCGAGA 60.445 66.667 0.00 0.00 41.36 4.04
2851 3697 4.247380 GCCATCTCTGGGGGCGAG 62.247 72.222 0.00 0.00 43.36 5.03
2855 3701 1.530771 CTCTTGCCATCTCTGGGGG 59.469 63.158 0.00 0.00 43.36 5.40
2856 3702 1.530771 CCTCTTGCCATCTCTGGGG 59.469 63.158 0.00 0.00 43.36 4.96
2857 3703 1.530771 CCCTCTTGCCATCTCTGGG 59.469 63.158 0.00 0.00 43.36 4.45
2858 3704 1.153005 GCCCTCTTGCCATCTCTGG 60.153 63.158 0.00 0.00 46.17 3.86
2859 3705 1.523258 CGCCCTCTTGCCATCTCTG 60.523 63.158 0.00 0.00 0.00 3.35
2860 3706 2.739996 CCGCCCTCTTGCCATCTCT 61.740 63.158 0.00 0.00 0.00 3.10
2861 3707 2.203126 CCGCCCTCTTGCCATCTC 60.203 66.667 0.00 0.00 0.00 2.75
2862 3708 4.496336 GCCGCCCTCTTGCCATCT 62.496 66.667 0.00 0.00 0.00 2.90
2879 3725 4.517703 GTCGTCGTCGAGGAGCCG 62.518 72.222 17.34 9.75 46.96 5.52
2880 3726 3.098377 GAGTCGTCGTCGAGGAGCC 62.098 68.421 17.34 7.55 46.96 4.70
2881 3727 2.389020 TGAGTCGTCGTCGAGGAGC 61.389 63.158 17.34 12.86 46.96 4.70
2882 3728 1.420702 GTGAGTCGTCGTCGAGGAG 59.579 63.158 17.34 3.38 46.96 3.69
2883 3729 2.378084 CGTGAGTCGTCGTCGAGGA 61.378 63.158 13.32 13.32 46.96 3.71
2884 3730 2.096030 CGTGAGTCGTCGTCGAGG 59.904 66.667 4.68 8.62 46.96 4.63
2885 3731 2.495921 AAGCGTGAGTCGTCGTCGAG 62.496 60.000 4.68 0.00 46.96 4.04
2886 3732 2.601398 AAGCGTGAGTCGTCGTCGA 61.601 57.895 0.00 0.00 44.12 4.20
2887 3733 2.127345 AAGCGTGAGTCGTCGTCG 60.127 61.111 8.80 0.00 42.13 5.12
2888 3734 2.708059 GCAAGCGTGAGTCGTCGTC 61.708 63.158 2.99 0.00 42.13 4.20
2889 3735 2.729862 GCAAGCGTGAGTCGTCGT 60.730 61.111 2.99 0.00 42.13 4.34
2890 3736 2.729491 TGCAAGCGTGAGTCGTCG 60.729 61.111 2.99 3.66 42.13 5.12
2891 3737 2.658707 GGTGCAAGCGTGAGTCGTC 61.659 63.158 2.99 0.00 42.13 4.20
2892 3738 2.661866 GGTGCAAGCGTGAGTCGT 60.662 61.111 2.99 0.00 42.13 4.34
2893 3739 2.356313 AGGTGCAAGCGTGAGTCG 60.356 61.111 2.99 0.00 40.95 4.18
2894 3740 0.243907 TAGAGGTGCAAGCGTGAGTC 59.756 55.000 2.99 0.00 40.95 3.36
2895 3741 0.038159 GTAGAGGTGCAAGCGTGAGT 60.038 55.000 2.99 0.00 40.95 3.41
2896 3742 0.737715 GGTAGAGGTGCAAGCGTGAG 60.738 60.000 2.99 0.00 40.95 3.51
2897 3743 1.292223 GGTAGAGGTGCAAGCGTGA 59.708 57.895 2.99 0.00 40.95 4.35
2898 3744 0.391661 ATGGTAGAGGTGCAAGCGTG 60.392 55.000 0.00 0.00 40.95 5.34
2899 3745 0.391661 CATGGTAGAGGTGCAAGCGT 60.392 55.000 0.00 0.00 40.95 5.07
2900 3746 0.108186 TCATGGTAGAGGTGCAAGCG 60.108 55.000 0.00 0.00 40.95 4.68
2901 3747 1.661341 CTCATGGTAGAGGTGCAAGC 58.339 55.000 0.00 0.00 31.94 4.01
2909 3755 0.904649 TGTGGTGCCTCATGGTAGAG 59.095 55.000 0.00 0.00 35.27 2.43
2910 3756 0.613260 GTGTGGTGCCTCATGGTAGA 59.387 55.000 0.00 0.00 35.27 2.59
2911 3757 0.615331 AGTGTGGTGCCTCATGGTAG 59.385 55.000 0.00 0.00 35.27 3.18
2912 3758 0.324614 CAGTGTGGTGCCTCATGGTA 59.675 55.000 0.00 0.00 35.27 3.25
2913 3759 1.073722 CAGTGTGGTGCCTCATGGT 59.926 57.895 0.00 0.00 35.27 3.55
2914 3760 1.676635 CCAGTGTGGTGCCTCATGG 60.677 63.158 0.00 2.89 31.35 3.66
2915 3761 0.034767 ATCCAGTGTGGTGCCTCATG 60.035 55.000 0.00 0.00 39.03 3.07
2916 3762 0.254178 GATCCAGTGTGGTGCCTCAT 59.746 55.000 0.00 0.00 39.03 2.90
2917 3763 1.679311 GATCCAGTGTGGTGCCTCA 59.321 57.895 0.00 0.00 39.03 3.86
2918 3764 1.078143 GGATCCAGTGTGGTGCCTC 60.078 63.158 6.95 0.00 39.03 4.70
2919 3765 2.959484 CGGATCCAGTGTGGTGCCT 61.959 63.158 13.41 0.00 39.03 4.75
2920 3766 2.436646 CGGATCCAGTGTGGTGCC 60.437 66.667 13.41 0.00 39.03 5.01
2921 3767 3.127533 GCGGATCCAGTGTGGTGC 61.128 66.667 13.41 0.00 39.03 5.01
2922 3768 2.815211 CGCGGATCCAGTGTGGTG 60.815 66.667 13.41 0.00 39.03 4.17
2923 3769 4.082523 CCGCGGATCCAGTGTGGT 62.083 66.667 24.07 0.00 39.03 4.16
2924 3770 4.838152 CCCGCGGATCCAGTGTGG 62.838 72.222 30.73 11.43 39.43 4.17
2925 3771 4.082523 ACCCGCGGATCCAGTGTG 62.083 66.667 30.73 8.96 0.00 3.82
2926 3772 4.082523 CACCCGCGGATCCAGTGT 62.083 66.667 30.73 11.48 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.