Multiple sequence alignment - TraesCS1A01G139900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G139900 chr1A 100.000 3383 0 0 1 3383 237743733 237747115 0.000000e+00 6248.0
1 TraesCS1A01G139900 chr1A 89.510 286 29 1 2736 3020 201889233 201889518 8.920000e-96 361.0
2 TraesCS1A01G139900 chr1D 91.074 1927 94 36 860 2737 191859768 191861665 0.000000e+00 2534.0
3 TraesCS1A01G139900 chr1D 91.150 339 22 3 3051 3383 191861662 191861998 1.430000e-123 453.0
4 TraesCS1A01G139900 chr1B 90.010 1932 91 39 850 2737 265646890 265648763 0.000000e+00 2405.0
5 TraesCS1A01G139900 chr1B 94.909 275 11 1 3051 3325 265648760 265649031 8.670000e-116 427.0
6 TraesCS1A01G139900 chr3B 99.517 828 3 1 1 828 39639797 39640623 0.000000e+00 1506.0
7 TraesCS1A01G139900 chr3B 98.311 829 14 0 1 829 472655136 472654308 0.000000e+00 1454.0
8 TraesCS1A01G139900 chr7B 99.158 831 7 0 1 831 424541497 424542327 0.000000e+00 1496.0
9 TraesCS1A01G139900 chr7B 90.210 286 27 1 2739 3023 508662866 508662581 4.120000e-99 372.0
10 TraesCS1A01G139900 chr3A 99.034 828 8 0 1 828 444445732 444446559 0.000000e+00 1485.0
11 TraesCS1A01G139900 chr3A 89.510 286 29 1 2739 3023 670599435 670599150 8.920000e-96 361.0
12 TraesCS1A01G139900 chr2A 98.671 828 11 0 1 828 630238326 630239153 0.000000e+00 1469.0
13 TraesCS1A01G139900 chr2A 89.000 300 31 2 2722 3020 45307361 45307659 1.480000e-98 370.0
14 TraesCS1A01G139900 chrUn 98.551 828 12 0 1 828 437387055 437387882 0.000000e+00 1463.0
15 TraesCS1A01G139900 chr7A 98.551 828 12 0 1 828 473485168 473484341 0.000000e+00 1463.0
16 TraesCS1A01G139900 chr7A 92.308 273 20 1 2736 3007 675233946 675233674 1.470000e-103 387.0
17 TraesCS1A01G139900 chr4B 98.551 828 12 0 1 828 312784129 312784956 0.000000e+00 1463.0
18 TraesCS1A01G139900 chr5B 98.430 828 13 0 1 828 311960812 311961639 0.000000e+00 1458.0
19 TraesCS1A01G139900 chr5B 94.444 54 3 0 2330 2383 708961337 708961284 2.160000e-12 84.2
20 TraesCS1A01G139900 chr5B 97.674 43 1 0 2342 2384 345138980 345139022 1.300000e-09 75.0
21 TraesCS1A01G139900 chr5A 89.262 298 30 2 2727 3023 383885381 383885085 4.120000e-99 372.0
22 TraesCS1A01G139900 chr5A 97.674 43 1 0 2342 2384 395805163 395805121 1.300000e-09 75.0
23 TraesCS1A01G139900 chr6B 89.384 292 30 1 2730 3020 31587533 31587824 1.920000e-97 366.0
24 TraesCS1A01G139900 chr4D 89.161 286 30 1 2736 3020 473193278 473193563 4.150000e-94 355.0
25 TraesCS1A01G139900 chr4D 87.960 299 34 2 2727 3023 291202719 291202421 5.370000e-93 351.0
26 TraesCS1A01G139900 chr4A 94.444 54 3 0 2330 2383 606346176 606346123 2.160000e-12 84.2
27 TraesCS1A01G139900 chr5D 97.674 43 1 0 2342 2384 302105400 302105442 1.300000e-09 75.0
28 TraesCS1A01G139900 chr5D 97.368 38 1 0 2334 2371 562062909 562062872 7.840000e-07 65.8
29 TraesCS1A01G139900 chr2B 100.000 37 0 0 2345 2381 42264781 42264817 6.060000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G139900 chr1A 237743733 237747115 3382 False 6248.0 6248 100.0000 1 3383 1 chr1A.!!$F2 3382
1 TraesCS1A01G139900 chr1D 191859768 191861998 2230 False 1493.5 2534 91.1120 860 3383 2 chr1D.!!$F1 2523
2 TraesCS1A01G139900 chr1B 265646890 265649031 2141 False 1416.0 2405 92.4595 850 3325 2 chr1B.!!$F1 2475
3 TraesCS1A01G139900 chr3B 39639797 39640623 826 False 1506.0 1506 99.5170 1 828 1 chr3B.!!$F1 827
4 TraesCS1A01G139900 chr3B 472654308 472655136 828 True 1454.0 1454 98.3110 1 829 1 chr3B.!!$R1 828
5 TraesCS1A01G139900 chr7B 424541497 424542327 830 False 1496.0 1496 99.1580 1 831 1 chr7B.!!$F1 830
6 TraesCS1A01G139900 chr3A 444445732 444446559 827 False 1485.0 1485 99.0340 1 828 1 chr3A.!!$F1 827
7 TraesCS1A01G139900 chr2A 630238326 630239153 827 False 1469.0 1469 98.6710 1 828 1 chr2A.!!$F2 827
8 TraesCS1A01G139900 chrUn 437387055 437387882 827 False 1463.0 1463 98.5510 1 828 1 chrUn.!!$F1 827
9 TraesCS1A01G139900 chr7A 473484341 473485168 827 True 1463.0 1463 98.5510 1 828 1 chr7A.!!$R1 827
10 TraesCS1A01G139900 chr4B 312784129 312784956 827 False 1463.0 1463 98.5510 1 828 1 chr4B.!!$F1 827
11 TraesCS1A01G139900 chr5B 311960812 311961639 827 False 1458.0 1458 98.4300 1 828 1 chr5B.!!$F1 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 919 0.523072 CCTTCATTCCAAGCACCACG 59.477 55.0 0.0 0.0 0.00 4.94 F
1169 1196 0.321653 CCTGGTACGCCTGCTTCTTT 60.322 55.0 0.0 0.0 35.27 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2112 0.109873 TTCTTCTCGCCGTCGTCTTC 60.110 55.0 0.00 0.0 36.96 2.87 R
3016 3093 0.246635 AAACGTCGATGACCTCAGGG 59.753 55.0 12.58 0.0 38.88 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
768 769 7.974243 GTGGTACTGACACGTAAAAATTTTT 57.026 32.000 19.44 19.44 0.00 1.94
817 818 3.463944 CCCCAATTGTGGTACTATCGTC 58.536 50.000 4.43 0.00 44.30 4.20
831 832 9.182214 TGGTACTATCGTCTAATTAACTCTGTT 57.818 33.333 0.00 0.00 0.00 3.16
832 833 9.662545 GGTACTATCGTCTAATTAACTCTGTTC 57.337 37.037 0.00 0.00 0.00 3.18
838 839 9.790389 ATCGTCTAATTAACTCTGTTCTAGTTG 57.210 33.333 0.00 0.00 37.71 3.16
839 840 8.790718 TCGTCTAATTAACTCTGTTCTAGTTGT 58.209 33.333 0.00 0.00 37.71 3.32
843 844 9.286946 CTAATTAACTCTGTTCTAGTTGTACGG 57.713 37.037 0.00 0.00 37.71 4.02
844 845 6.639632 TTAACTCTGTTCTAGTTGTACGGT 57.360 37.500 0.00 0.00 37.71 4.83
845 846 7.744087 TTAACTCTGTTCTAGTTGTACGGTA 57.256 36.000 0.00 0.00 37.71 4.02
846 847 5.619625 ACTCTGTTCTAGTTGTACGGTAC 57.380 43.478 11.33 11.33 0.00 3.34
847 848 5.312079 ACTCTGTTCTAGTTGTACGGTACT 58.688 41.667 18.32 3.71 0.00 2.73
848 849 5.411053 ACTCTGTTCTAGTTGTACGGTACTC 59.589 44.000 18.32 11.59 0.00 2.59
852 853 4.833478 TCTAGTTGTACGGTACTCTCCT 57.167 45.455 18.32 10.91 0.00 3.69
857 858 3.446442 TGTACGGTACTCTCCTTCCTT 57.554 47.619 18.32 0.00 0.00 3.36
873 874 2.896168 TCCTTCCTATTTAACACCGCG 58.104 47.619 0.00 0.00 0.00 6.46
877 878 1.639534 CTATTTAACACCGCGCCCG 59.360 57.895 0.00 0.00 0.00 6.13
913 919 0.523072 CCTTCATTCCAAGCACCACG 59.477 55.000 0.00 0.00 0.00 4.94
937 943 3.316573 CTCTCCTCCAACCCACGCC 62.317 68.421 0.00 0.00 0.00 5.68
956 964 4.065281 ACGCCCACGCACTACCTC 62.065 66.667 0.00 0.00 45.53 3.85
957 965 4.814294 CGCCCACGCACTACCTCC 62.814 72.222 0.00 0.00 34.03 4.30
960 968 2.722201 CCCACGCACTACCTCCCTC 61.722 68.421 0.00 0.00 0.00 4.30
1169 1196 0.321653 CCTGGTACGCCTGCTTCTTT 60.322 55.000 0.00 0.00 35.27 2.52
1191 1238 3.197116 TCTTTCATCTCCTTACGGTTCCC 59.803 47.826 0.00 0.00 0.00 3.97
1196 1243 2.454538 TCTCCTTACGGTTCCCTTCTC 58.545 52.381 0.00 0.00 0.00 2.87
1200 1247 3.094572 CCTTACGGTTCCCTTCTCTGTA 58.905 50.000 0.00 0.00 0.00 2.74
1201 1248 3.130693 CCTTACGGTTCCCTTCTCTGTAG 59.869 52.174 0.00 0.00 0.00 2.74
1202 1249 1.558233 ACGGTTCCCTTCTCTGTAGG 58.442 55.000 0.00 0.00 0.00 3.18
1205 1252 2.822697 GGTTCCCTTCTCTGTAGGACT 58.177 52.381 0.00 0.00 34.56 3.85
1207 1254 3.955551 GGTTCCCTTCTCTGTAGGACTAG 59.044 52.174 0.00 0.00 34.56 2.57
1210 1257 3.592427 TCCCTTCTCTGTAGGACTAGTGT 59.408 47.826 0.00 0.00 34.56 3.55
1211 1258 4.786994 TCCCTTCTCTGTAGGACTAGTGTA 59.213 45.833 0.00 0.00 34.56 2.90
1212 1259 5.252397 TCCCTTCTCTGTAGGACTAGTGTAA 59.748 44.000 0.00 0.00 34.56 2.41
1230 1279 3.886505 TGTAATTTCTGACCGTTTGCCTT 59.113 39.130 0.00 0.00 0.00 4.35
1231 1280 5.049267 GTGTAATTTCTGACCGTTTGCCTTA 60.049 40.000 0.00 0.00 0.00 2.69
1232 1281 5.531659 TGTAATTTCTGACCGTTTGCCTTAA 59.468 36.000 0.00 0.00 0.00 1.85
1233 1282 5.722021 AATTTCTGACCGTTTGCCTTAAT 57.278 34.783 0.00 0.00 0.00 1.40
1237 1286 3.254657 TCTGACCGTTTGCCTTAATTTGG 59.745 43.478 0.00 0.00 0.00 3.28
1243 1292 4.022329 CCGTTTGCCTTAATTTGGTTCTCT 60.022 41.667 0.00 0.00 0.00 3.10
1279 1328 1.529152 TTAAGACTGAGACGGCGGCA 61.529 55.000 18.30 7.40 0.00 5.69
1324 1373 2.956964 GACGCGGCCGAGATCAAG 60.957 66.667 35.95 14.83 38.29 3.02
1401 1450 0.817634 TCGCCCAACAAGGACAACAG 60.818 55.000 0.00 0.00 41.22 3.16
1405 1454 1.318576 CCAACAAGGACAACAGGGAC 58.681 55.000 0.00 0.00 41.22 4.46
1408 1457 2.348411 ACAAGGACAACAGGGACAAG 57.652 50.000 0.00 0.00 0.00 3.16
1488 1537 2.045926 CAAGGAGAAGGGCGGTGG 60.046 66.667 0.00 0.00 0.00 4.61
1661 1728 8.299570 GTGTTGTAAATGAAGATTTGGTCTCAT 58.700 33.333 0.00 0.00 35.67 2.90
1816 1883 1.523711 GGCCGCAGATTCATTCCGA 60.524 57.895 0.00 0.00 0.00 4.55
1824 1891 3.458189 CAGATTCATTCCGACCTGGTAC 58.542 50.000 0.00 0.00 39.52 3.34
1836 1903 4.261801 CGACCTGGTACAAGGAATCATTT 58.738 43.478 23.92 0.00 38.70 2.32
1842 1909 6.095440 CCTGGTACAAGGAATCATTTAGTTGG 59.905 42.308 11.30 0.00 38.70 3.77
1957 2028 1.073025 GTGACTGGCACCATGGACA 59.927 57.895 21.47 13.19 41.78 4.02
2041 2112 1.004918 AAGAAGGACGGCGACAAGG 60.005 57.895 16.62 0.00 0.00 3.61
2073 2144 2.705730 GAGAAGAAGAAGGACAAGGGC 58.294 52.381 0.00 0.00 0.00 5.19
2074 2145 1.002544 AGAAGAAGAAGGACAAGGGCG 59.997 52.381 0.00 0.00 0.00 6.13
2075 2146 0.606673 AAGAAGAAGGACAAGGGCGC 60.607 55.000 0.00 0.00 0.00 6.53
2076 2147 1.003233 GAAGAAGGACAAGGGCGCT 60.003 57.895 7.64 0.00 0.00 5.92
2077 2148 1.301677 GAAGAAGGACAAGGGCGCTG 61.302 60.000 7.64 0.00 0.00 5.18
2078 2149 2.747855 GAAGGACAAGGGCGCTGG 60.748 66.667 7.64 3.08 0.00 4.85
2390 2464 1.450848 CCGTCATGTGAGCTGCCAT 60.451 57.895 0.00 0.00 0.00 4.40
2434 2508 4.680237 CACGACGCCAAGCCCAGA 62.680 66.667 0.00 0.00 0.00 3.86
2435 2509 4.379243 ACGACGCCAAGCCCAGAG 62.379 66.667 0.00 0.00 0.00 3.35
2448 2522 3.485431 CAGAGTCGCCGCAAGCAG 61.485 66.667 0.00 0.00 44.04 4.24
2449 2523 3.996124 AGAGTCGCCGCAAGCAGT 61.996 61.111 0.00 0.00 44.04 4.40
2450 2524 2.126071 GAGTCGCCGCAAGCAGTA 60.126 61.111 0.00 0.00 44.04 2.74
2451 2525 1.519455 GAGTCGCCGCAAGCAGTAT 60.519 57.895 0.00 0.00 44.04 2.12
2452 2526 1.756375 GAGTCGCCGCAAGCAGTATG 61.756 60.000 0.00 0.00 44.04 2.39
2480 2556 4.021925 GAGAAGCACGGCCTGGGT 62.022 66.667 0.00 0.00 0.00 4.51
2483 2559 2.912025 AAGCACGGCCTGGGTTTG 60.912 61.111 0.00 0.00 0.00 2.93
2558 2634 4.504461 CACCGAGAATTAGCAGACATGTAC 59.496 45.833 0.00 0.00 0.00 2.90
2674 2751 1.269174 CAATCGTTGTTGTCATGGCCA 59.731 47.619 8.56 8.56 0.00 5.36
2675 2752 1.167851 ATCGTTGTTGTCATGGCCAG 58.832 50.000 13.05 3.43 0.00 4.85
2722 2799 3.529341 ATGAACTGGTGGCGCGTCA 62.529 57.895 10.57 10.57 0.00 4.35
2734 2811 4.012895 GCGTCACTGTTGCCCGTG 62.013 66.667 0.00 0.00 0.00 4.94
2735 2812 2.279851 CGTCACTGTTGCCCGTGA 60.280 61.111 0.00 0.00 37.79 4.35
2736 2813 2.310233 CGTCACTGTTGCCCGTGAG 61.310 63.158 0.00 0.00 40.48 3.51
2737 2814 1.069090 GTCACTGTTGCCCGTGAGA 59.931 57.895 0.00 0.00 40.48 3.27
2738 2815 0.946221 GTCACTGTTGCCCGTGAGAG 60.946 60.000 0.00 0.00 40.48 3.20
2739 2816 2.031163 ACTGTTGCCCGTGAGAGC 59.969 61.111 0.00 0.00 0.00 4.09
2740 2817 2.031012 CTGTTGCCCGTGAGAGCA 59.969 61.111 0.00 0.00 37.18 4.26
2741 2818 1.376424 CTGTTGCCCGTGAGAGCAT 60.376 57.895 0.00 0.00 39.11 3.79
2742 2819 1.364626 CTGTTGCCCGTGAGAGCATC 61.365 60.000 0.00 0.00 39.11 3.91
2763 2840 7.513968 GCATCTGCTACAGTTTATATGTTAGC 58.486 38.462 0.00 0.00 38.21 3.09
2764 2841 7.386299 GCATCTGCTACAGTTTATATGTTAGCT 59.614 37.037 0.00 0.00 38.21 3.32
2765 2842 9.265901 CATCTGCTACAGTTTATATGTTAGCTT 57.734 33.333 0.00 0.00 32.89 3.74
2766 2843 8.648557 TCTGCTACAGTTTATATGTTAGCTTG 57.351 34.615 0.00 0.00 32.89 4.01
2767 2844 8.258007 TCTGCTACAGTTTATATGTTAGCTTGT 58.742 33.333 0.00 0.00 32.89 3.16
2768 2845 8.786826 TGCTACAGTTTATATGTTAGCTTGTT 57.213 30.769 0.00 0.00 32.89 2.83
2769 2846 8.664798 TGCTACAGTTTATATGTTAGCTTGTTG 58.335 33.333 0.00 0.00 32.89 3.33
2770 2847 8.122952 GCTACAGTTTATATGTTAGCTTGTTGG 58.877 37.037 0.00 0.00 30.93 3.77
2771 2848 7.996098 ACAGTTTATATGTTAGCTTGTTGGT 57.004 32.000 0.00 0.00 0.00 3.67
2773 2850 9.509956 ACAGTTTATATGTTAGCTTGTTGGTAA 57.490 29.630 0.00 0.00 36.42 2.85
2780 2857 9.965824 ATATGTTAGCTTGTTGGTAAAATATGC 57.034 29.630 0.00 0.00 42.95 3.14
2781 2858 6.626302 TGTTAGCTTGTTGGTAAAATATGCC 58.374 36.000 0.00 0.00 39.88 4.40
2782 2859 6.209589 TGTTAGCTTGTTGGTAAAATATGCCA 59.790 34.615 0.00 0.00 42.69 4.92
2783 2860 5.937975 AGCTTGTTGGTAAAATATGCCAT 57.062 34.783 0.00 0.00 43.93 4.40
2784 2861 5.663456 AGCTTGTTGGTAAAATATGCCATG 58.337 37.500 0.00 0.00 43.93 3.66
2785 2862 5.187576 AGCTTGTTGGTAAAATATGCCATGT 59.812 36.000 0.00 0.00 43.93 3.21
2786 2863 5.519927 GCTTGTTGGTAAAATATGCCATGTC 59.480 40.000 0.00 0.00 43.93 3.06
2787 2864 6.596309 TTGTTGGTAAAATATGCCATGTCA 57.404 33.333 0.00 0.00 43.93 3.58
2788 2865 6.788598 TGTTGGTAAAATATGCCATGTCAT 57.211 33.333 0.00 0.00 43.93 3.06
2789 2866 6.804677 TGTTGGTAAAATATGCCATGTCATC 58.195 36.000 0.00 0.00 43.93 2.92
2790 2867 6.379417 TGTTGGTAAAATATGCCATGTCATCA 59.621 34.615 0.00 0.00 43.93 3.07
2791 2868 7.093596 TGTTGGTAAAATATGCCATGTCATCAA 60.094 33.333 0.00 0.00 43.93 2.57
2792 2869 7.415592 TGGTAAAATATGCCATGTCATCAAA 57.584 32.000 0.00 0.00 39.10 2.69
2793 2870 7.264221 TGGTAAAATATGCCATGTCATCAAAC 58.736 34.615 0.00 0.00 39.10 2.93
2794 2871 7.093596 TGGTAAAATATGCCATGTCATCAAACA 60.094 33.333 0.00 0.00 39.10 2.83
2795 2872 7.763528 GGTAAAATATGCCATGTCATCAAACAA 59.236 33.333 0.00 0.00 33.24 2.83
2796 2873 9.316730 GTAAAATATGCCATGTCATCAAACAAT 57.683 29.630 0.00 0.00 31.81 2.71
2799 2876 9.701098 AAATATGCCATGTCATCAAACAATATC 57.299 29.630 0.00 0.00 31.81 1.63
2800 2877 6.971726 ATGCCATGTCATCAAACAATATCT 57.028 33.333 0.00 0.00 31.81 1.98
2801 2878 6.778834 TGCCATGTCATCAAACAATATCTT 57.221 33.333 0.00 0.00 31.81 2.40
2802 2879 7.878547 TGCCATGTCATCAAACAATATCTTA 57.121 32.000 0.00 0.00 31.81 2.10
2803 2880 8.291191 TGCCATGTCATCAAACAATATCTTAA 57.709 30.769 0.00 0.00 31.81 1.85
2804 2881 8.190122 TGCCATGTCATCAAACAATATCTTAAC 58.810 33.333 0.00 0.00 31.81 2.01
2805 2882 8.190122 GCCATGTCATCAAACAATATCTTAACA 58.810 33.333 0.00 0.00 31.81 2.41
2840 2917 8.685838 TCAAATAGGTTGTATTTAGTATGCCC 57.314 34.615 0.00 0.00 38.47 5.36
2841 2918 8.275758 TCAAATAGGTTGTATTTAGTATGCCCA 58.724 33.333 0.00 0.00 38.47 5.36
2842 2919 8.908903 CAAATAGGTTGTATTTAGTATGCCCAA 58.091 33.333 0.00 0.00 32.08 4.12
2843 2920 9.654919 AAATAGGTTGTATTTAGTATGCCCAAT 57.345 29.630 0.00 0.00 0.00 3.16
2846 2923 8.691661 AGGTTGTATTTAGTATGCCCAATAAG 57.308 34.615 0.00 0.00 0.00 1.73
2847 2924 8.499406 AGGTTGTATTTAGTATGCCCAATAAGA 58.501 33.333 0.00 0.00 0.00 2.10
2848 2925 9.297037 GGTTGTATTTAGTATGCCCAATAAGAT 57.703 33.333 0.00 0.00 0.00 2.40
2850 2927 9.860650 TTGTATTTAGTATGCCCAATAAGATGT 57.139 29.630 0.00 0.00 0.00 3.06
2851 2928 9.283768 TGTATTTAGTATGCCCAATAAGATGTG 57.716 33.333 0.00 0.00 0.00 3.21
2852 2929 9.502091 GTATTTAGTATGCCCAATAAGATGTGA 57.498 33.333 0.00 0.00 0.00 3.58
2853 2930 8.627208 ATTTAGTATGCCCAATAAGATGTGAG 57.373 34.615 0.00 0.00 0.00 3.51
2854 2931 5.894298 AGTATGCCCAATAAGATGTGAGA 57.106 39.130 0.00 0.00 0.00 3.27
2855 2932 6.445451 AGTATGCCCAATAAGATGTGAGAT 57.555 37.500 0.00 0.00 0.00 2.75
2856 2933 7.559335 AGTATGCCCAATAAGATGTGAGATA 57.441 36.000 0.00 0.00 0.00 1.98
2857 2934 7.977818 AGTATGCCCAATAAGATGTGAGATAA 58.022 34.615 0.00 0.00 0.00 1.75
2858 2935 8.609483 AGTATGCCCAATAAGATGTGAGATAAT 58.391 33.333 0.00 0.00 0.00 1.28
2859 2936 9.890629 GTATGCCCAATAAGATGTGAGATAATA 57.109 33.333 0.00 0.00 0.00 0.98
2861 2938 9.812347 ATGCCCAATAAGATGTGAGATAATAAA 57.188 29.630 0.00 0.00 0.00 1.40
2862 2939 9.812347 TGCCCAATAAGATGTGAGATAATAAAT 57.188 29.630 0.00 0.00 0.00 1.40
2871 2948 9.717942 AGATGTGAGATAATAAATAAGGTGCTC 57.282 33.333 0.00 0.00 0.00 4.26
2872 2949 9.717942 GATGTGAGATAATAAATAAGGTGCTCT 57.282 33.333 0.00 0.00 0.00 4.09
2874 2951 9.905713 TGTGAGATAATAAATAAGGTGCTCTTT 57.094 29.630 0.00 0.00 36.93 2.52
2883 2960 9.905713 ATAAATAAGGTGCTCTTTCATTCTACA 57.094 29.630 0.00 0.00 36.93 2.74
2884 2961 8.814038 AAATAAGGTGCTCTTTCATTCTACAT 57.186 30.769 0.00 0.00 36.93 2.29
2885 2962 8.814038 AATAAGGTGCTCTTTCATTCTACATT 57.186 30.769 0.00 0.00 36.93 2.71
2886 2963 6.506500 AAGGTGCTCTTTCATTCTACATTG 57.493 37.500 0.00 0.00 29.99 2.82
2887 2964 5.809001 AGGTGCTCTTTCATTCTACATTGA 58.191 37.500 0.00 0.00 0.00 2.57
2888 2965 6.240894 AGGTGCTCTTTCATTCTACATTGAA 58.759 36.000 0.00 0.00 0.00 2.69
2889 2966 6.373774 AGGTGCTCTTTCATTCTACATTGAAG 59.626 38.462 0.00 0.00 33.68 3.02
2890 2967 6.026513 GTGCTCTTTCATTCTACATTGAAGC 58.973 40.000 0.00 0.00 33.68 3.86
2891 2968 5.942236 TGCTCTTTCATTCTACATTGAAGCT 59.058 36.000 0.00 0.00 33.68 3.74
2892 2969 6.432162 TGCTCTTTCATTCTACATTGAAGCTT 59.568 34.615 0.00 0.00 33.68 3.74
2893 2970 6.746364 GCTCTTTCATTCTACATTGAAGCTTG 59.254 38.462 2.10 0.00 33.68 4.01
2894 2971 7.574592 GCTCTTTCATTCTACATTGAAGCTTGT 60.575 37.037 2.10 0.00 33.68 3.16
2895 2972 7.587629 TCTTTCATTCTACATTGAAGCTTGTG 58.412 34.615 2.10 2.35 33.68 3.33
2896 2973 6.882610 TTCATTCTACATTGAAGCTTGTGT 57.117 33.333 2.10 8.79 0.00 3.72
2897 2974 7.977789 TTCATTCTACATTGAAGCTTGTGTA 57.022 32.000 2.10 9.50 0.00 2.90
2898 2975 7.977789 TCATTCTACATTGAAGCTTGTGTAA 57.022 32.000 2.10 0.00 0.00 2.41
2899 2976 8.565896 TCATTCTACATTGAAGCTTGTGTAAT 57.434 30.769 2.10 1.57 0.00 1.89
2900 2977 8.453320 TCATTCTACATTGAAGCTTGTGTAATG 58.547 33.333 2.10 12.82 34.25 1.90
2901 2978 6.741992 TCTACATTGAAGCTTGTGTAATGG 57.258 37.500 2.10 0.00 34.07 3.16
2902 2979 4.789012 ACATTGAAGCTTGTGTAATGGG 57.211 40.909 2.10 0.00 34.07 4.00
2903 2980 4.151883 ACATTGAAGCTTGTGTAATGGGT 58.848 39.130 2.10 0.00 34.07 4.51
2904 2981 4.022068 ACATTGAAGCTTGTGTAATGGGTG 60.022 41.667 2.10 0.00 34.07 4.61
2905 2982 3.222173 TGAAGCTTGTGTAATGGGTGT 57.778 42.857 2.10 0.00 0.00 4.16
2906 2983 3.561143 TGAAGCTTGTGTAATGGGTGTT 58.439 40.909 2.10 0.00 0.00 3.32
2907 2984 3.317711 TGAAGCTTGTGTAATGGGTGTTG 59.682 43.478 2.10 0.00 0.00 3.33
2908 2985 2.238521 AGCTTGTGTAATGGGTGTTGG 58.761 47.619 0.00 0.00 0.00 3.77
2909 2986 1.960689 GCTTGTGTAATGGGTGTTGGT 59.039 47.619 0.00 0.00 0.00 3.67
2910 2987 2.364002 GCTTGTGTAATGGGTGTTGGTT 59.636 45.455 0.00 0.00 0.00 3.67
2911 2988 3.181470 GCTTGTGTAATGGGTGTTGGTTT 60.181 43.478 0.00 0.00 0.00 3.27
2912 2989 4.038162 GCTTGTGTAATGGGTGTTGGTTTA 59.962 41.667 0.00 0.00 0.00 2.01
2913 2990 5.279256 GCTTGTGTAATGGGTGTTGGTTTAT 60.279 40.000 0.00 0.00 0.00 1.40
2914 2991 6.732896 TTGTGTAATGGGTGTTGGTTTATT 57.267 33.333 0.00 0.00 0.00 1.40
2915 2992 7.524038 GCTTGTGTAATGGGTGTTGGTTTATTA 60.524 37.037 0.00 0.00 0.00 0.98
2916 2993 7.216973 TGTGTAATGGGTGTTGGTTTATTAC 57.783 36.000 0.00 0.00 33.72 1.89
2917 2994 6.776116 TGTGTAATGGGTGTTGGTTTATTACA 59.224 34.615 0.00 0.00 38.15 2.41
2918 2995 7.451877 TGTGTAATGGGTGTTGGTTTATTACAT 59.548 33.333 0.00 0.00 40.75 2.29
2919 2996 8.958506 GTGTAATGGGTGTTGGTTTATTACATA 58.041 33.333 0.00 0.00 40.75 2.29
2920 2997 8.958506 TGTAATGGGTGTTGGTTTATTACATAC 58.041 33.333 0.00 0.00 36.59 2.39
2921 2998 8.958506 GTAATGGGTGTTGGTTTATTACATACA 58.041 33.333 0.00 0.00 33.48 2.29
2922 2999 8.423906 AATGGGTGTTGGTTTATTACATACAA 57.576 30.769 0.00 0.00 0.00 2.41
2923 3000 7.216973 TGGGTGTTGGTTTATTACATACAAC 57.783 36.000 0.00 0.00 38.81 3.32
2924 3001 6.776116 TGGGTGTTGGTTTATTACATACAACA 59.224 34.615 0.00 0.00 43.85 3.33
2925 3002 7.451877 TGGGTGTTGGTTTATTACATACAACAT 59.548 33.333 10.64 0.00 46.37 2.71
2926 3003 8.308207 GGGTGTTGGTTTATTACATACAACATT 58.692 33.333 10.64 0.00 46.37 2.71
2927 3004 9.699703 GGTGTTGGTTTATTACATACAACATTT 57.300 29.630 10.64 0.00 46.37 2.32
2938 3015 9.965902 ATTACATACAACATTTCTCTCTTTCCT 57.034 29.630 0.00 0.00 0.00 3.36
2939 3016 7.913674 ACATACAACATTTCTCTCTTTCCTC 57.086 36.000 0.00 0.00 0.00 3.71
2940 3017 7.453393 ACATACAACATTTCTCTCTTTCCTCA 58.547 34.615 0.00 0.00 0.00 3.86
2941 3018 8.105829 ACATACAACATTTCTCTCTTTCCTCAT 58.894 33.333 0.00 0.00 0.00 2.90
2942 3019 8.954350 CATACAACATTTCTCTCTTTCCTCATT 58.046 33.333 0.00 0.00 0.00 2.57
2943 3020 7.830099 ACAACATTTCTCTCTTTCCTCATTT 57.170 32.000 0.00 0.00 0.00 2.32
2944 3021 8.924511 ACAACATTTCTCTCTTTCCTCATTTA 57.075 30.769 0.00 0.00 0.00 1.40
2945 3022 9.525826 ACAACATTTCTCTCTTTCCTCATTTAT 57.474 29.630 0.00 0.00 0.00 1.40
2948 3025 8.465201 ACATTTCTCTCTTTCCTCATTTATTGC 58.535 33.333 0.00 0.00 0.00 3.56
2949 3026 8.464404 CATTTCTCTCTTTCCTCATTTATTGCA 58.536 33.333 0.00 0.00 0.00 4.08
2950 3027 8.585471 TTTCTCTCTTTCCTCATTTATTGCAT 57.415 30.769 0.00 0.00 0.00 3.96
2951 3028 7.563888 TCTCTCTTTCCTCATTTATTGCATG 57.436 36.000 0.00 0.00 0.00 4.06
2952 3029 7.341030 TCTCTCTTTCCTCATTTATTGCATGA 58.659 34.615 0.00 0.00 0.00 3.07
2953 3030 7.281774 TCTCTCTTTCCTCATTTATTGCATGAC 59.718 37.037 0.00 0.00 0.00 3.06
2954 3031 6.885918 TCTCTTTCCTCATTTATTGCATGACA 59.114 34.615 0.00 0.00 0.00 3.58
2955 3032 6.855836 TCTTTCCTCATTTATTGCATGACAC 58.144 36.000 0.00 0.00 0.00 3.67
2956 3033 6.433716 TCTTTCCTCATTTATTGCATGACACA 59.566 34.615 0.00 0.00 0.00 3.72
2957 3034 6.778834 TTCCTCATTTATTGCATGACACAT 57.221 33.333 0.00 0.00 0.00 3.21
2958 3035 6.381481 TCCTCATTTATTGCATGACACATC 57.619 37.500 0.00 0.00 0.00 3.06
2959 3036 5.887035 TCCTCATTTATTGCATGACACATCA 59.113 36.000 0.00 0.00 39.83 3.07
2961 3038 6.861572 CCTCATTTATTGCATGACACATCATC 59.138 38.462 0.00 0.00 44.13 2.92
2962 3039 7.336161 TCATTTATTGCATGACACATCATCA 57.664 32.000 0.00 0.00 44.13 3.07
2963 3040 7.773149 TCATTTATTGCATGACACATCATCAA 58.227 30.769 0.00 0.00 44.13 2.57
2964 3041 8.251721 TCATTTATTGCATGACACATCATCAAA 58.748 29.630 0.00 0.00 44.13 2.69
2965 3042 8.874816 CATTTATTGCATGACACATCATCAAAA 58.125 29.630 0.00 0.00 44.13 2.44
2966 3043 8.828688 TTTATTGCATGACACATCATCAAAAA 57.171 26.923 0.00 0.00 44.13 1.94
2967 3044 9.438228 TTTATTGCATGACACATCATCAAAAAT 57.562 25.926 0.00 0.00 44.13 1.82
2968 3045 7.915293 ATTGCATGACACATCATCAAAAATT 57.085 28.000 0.00 0.00 44.13 1.82
2969 3046 6.954616 TGCATGACACATCATCAAAAATTC 57.045 33.333 0.00 0.00 44.13 2.17
2970 3047 6.693466 TGCATGACACATCATCAAAAATTCT 58.307 32.000 0.00 0.00 44.13 2.40
2971 3048 7.828712 TGCATGACACATCATCAAAAATTCTA 58.171 30.769 0.00 0.00 44.13 2.10
2972 3049 8.471609 TGCATGACACATCATCAAAAATTCTAT 58.528 29.630 0.00 0.00 44.13 1.98
2973 3050 8.752254 GCATGACACATCATCAAAAATTCTATG 58.248 33.333 0.00 0.00 44.13 2.23
2974 3051 9.797556 CATGACACATCATCAAAAATTCTATGT 57.202 29.630 0.00 0.00 44.13 2.29
2975 3052 9.797556 ATGACACATCATCAAAAATTCTATGTG 57.202 29.630 10.16 10.16 42.15 3.21
2976 3053 9.012161 TGACACATCATCAAAAATTCTATGTGA 57.988 29.630 16.81 3.35 43.28 3.58
2993 3070 8.997621 TCTATGTGATAAAGTCTACCAACAAC 57.002 34.615 0.00 0.00 0.00 3.32
2994 3071 8.812972 TCTATGTGATAAAGTCTACCAACAACT 58.187 33.333 0.00 0.00 0.00 3.16
2997 3074 8.997621 TGTGATAAAGTCTACCAACAACTATC 57.002 34.615 0.00 0.00 0.00 2.08
2998 3075 8.812972 TGTGATAAAGTCTACCAACAACTATCT 58.187 33.333 0.00 0.00 0.00 1.98
2999 3076 9.654663 GTGATAAAGTCTACCAACAACTATCTT 57.345 33.333 0.00 0.00 0.00 2.40
3021 3098 8.510358 TCTTATAATCATTGAAGATCCCCTGA 57.490 34.615 0.00 0.00 0.00 3.86
3022 3099 8.600668 TCTTATAATCATTGAAGATCCCCTGAG 58.399 37.037 0.00 0.00 0.00 3.35
3023 3100 4.450305 AATCATTGAAGATCCCCTGAGG 57.550 45.455 0.00 0.00 0.00 3.86
3024 3101 2.850833 TCATTGAAGATCCCCTGAGGT 58.149 47.619 0.00 0.00 36.75 3.85
3025 3102 2.774234 TCATTGAAGATCCCCTGAGGTC 59.226 50.000 0.00 0.00 36.75 3.85
3026 3103 2.342406 TTGAAGATCCCCTGAGGTCA 57.658 50.000 0.00 0.00 36.75 4.02
3027 3104 2.575921 TGAAGATCCCCTGAGGTCAT 57.424 50.000 0.00 0.00 36.75 3.06
3028 3105 2.402564 TGAAGATCCCCTGAGGTCATC 58.597 52.381 0.00 0.00 36.75 2.92
3029 3106 1.342819 GAAGATCCCCTGAGGTCATCG 59.657 57.143 0.00 0.00 36.75 3.84
3030 3107 0.558220 AGATCCCCTGAGGTCATCGA 59.442 55.000 0.00 0.00 36.75 3.59
3031 3108 0.676736 GATCCCCTGAGGTCATCGAC 59.323 60.000 0.00 0.00 36.75 4.20
3032 3109 1.109920 ATCCCCTGAGGTCATCGACG 61.110 60.000 0.00 0.00 36.75 5.12
3033 3110 2.052690 CCCCTGAGGTCATCGACGT 61.053 63.158 0.00 0.00 32.65 4.34
3034 3111 1.605058 CCCCTGAGGTCATCGACGTT 61.605 60.000 0.00 0.00 32.65 3.99
3035 3112 0.246635 CCCTGAGGTCATCGACGTTT 59.753 55.000 0.00 0.00 32.65 3.60
3036 3113 1.337823 CCCTGAGGTCATCGACGTTTT 60.338 52.381 0.00 0.00 32.65 2.43
3037 3114 1.993370 CCTGAGGTCATCGACGTTTTC 59.007 52.381 0.00 0.00 32.65 2.29
3038 3115 2.352814 CCTGAGGTCATCGACGTTTTCT 60.353 50.000 0.00 0.00 32.65 2.52
3039 3116 3.318017 CTGAGGTCATCGACGTTTTCTT 58.682 45.455 0.00 0.00 32.65 2.52
3040 3117 3.724374 TGAGGTCATCGACGTTTTCTTT 58.276 40.909 0.00 0.00 32.65 2.52
3041 3118 4.124238 TGAGGTCATCGACGTTTTCTTTT 58.876 39.130 0.00 0.00 32.65 2.27
3042 3119 4.573201 TGAGGTCATCGACGTTTTCTTTTT 59.427 37.500 0.00 0.00 32.65 1.94
3097 3180 0.958382 TGCCATTTTCGTCTTCCGGG 60.958 55.000 0.00 0.00 37.11 5.73
3136 3219 0.039617 TTGCGTCGGCCATCTTTTTG 60.040 50.000 2.24 0.00 38.85 2.44
3143 3226 1.514873 GCCATCTTTTTGCGGCTCG 60.515 57.895 0.00 0.00 41.50 5.03
3206 3289 2.286242 TGATCGATTAGCGTGAGACGAC 60.286 50.000 0.00 0.00 46.05 4.34
3264 3348 4.144051 GCGTGTGTGTTTATTTATATGCGC 59.856 41.667 0.00 0.00 0.00 6.09
3271 3355 6.481976 TGTGTTTATTTATATGCGCTGCTAGT 59.518 34.615 9.73 0.00 0.00 2.57
3327 3411 2.612212 CCATTGTTTAGCGCTAATCCGT 59.388 45.455 29.17 16.26 0.00 4.69
3329 3413 2.953466 TGTTTAGCGCTAATCCGTCT 57.047 45.000 29.17 0.00 0.00 4.18
3334 3418 0.179108 AGCGCTAATCCGTCTTGTCC 60.179 55.000 8.99 0.00 0.00 4.02
3349 3433 0.813610 TGTCCTGTTCTTGCGTGGTG 60.814 55.000 0.00 0.00 0.00 4.17
3366 3450 0.319555 GTGTCAAGCTACGCAGTGGA 60.320 55.000 0.00 0.00 43.65 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
768 769 3.432933 GTGGCGAATTGGTACTCGTTTTA 59.567 43.478 4.45 0.00 37.39 1.52
817 818 9.286946 CCGTACAACTAGAACAGAGTTAATTAG 57.713 37.037 0.00 0.00 35.36 1.73
831 832 4.833478 AGGAGAGTACCGTACAACTAGA 57.167 45.455 11.26 0.00 34.73 2.43
832 833 4.335037 GGAAGGAGAGTACCGTACAACTAG 59.665 50.000 11.26 0.00 34.73 2.57
833 834 4.018960 AGGAAGGAGAGTACCGTACAACTA 60.019 45.833 11.26 0.00 34.73 2.24
834 835 3.087781 GGAAGGAGAGTACCGTACAACT 58.912 50.000 11.26 9.28 34.73 3.16
835 836 3.087781 AGGAAGGAGAGTACCGTACAAC 58.912 50.000 11.26 4.91 34.73 3.32
836 837 3.446442 AGGAAGGAGAGTACCGTACAA 57.554 47.619 11.26 0.00 34.73 2.41
837 838 3.350833 GAAGGAAGGAGAGTACCGTACA 58.649 50.000 11.26 0.00 34.73 2.90
838 839 2.687425 GGAAGGAAGGAGAGTACCGTAC 59.313 54.545 0.00 0.00 34.73 3.67
839 840 2.579860 AGGAAGGAAGGAGAGTACCGTA 59.420 50.000 0.00 0.00 34.73 4.02
840 841 1.358445 AGGAAGGAAGGAGAGTACCGT 59.642 52.381 0.00 0.00 34.73 4.83
841 842 2.146920 AGGAAGGAAGGAGAGTACCG 57.853 55.000 0.00 0.00 34.73 4.02
842 843 7.125356 TGTTAAATAGGAAGGAAGGAGAGTACC 59.875 40.741 0.00 0.00 0.00 3.34
843 844 7.980662 GTGTTAAATAGGAAGGAAGGAGAGTAC 59.019 40.741 0.00 0.00 0.00 2.73
844 845 7.125356 GGTGTTAAATAGGAAGGAAGGAGAGTA 59.875 40.741 0.00 0.00 0.00 2.59
845 846 6.070136 GGTGTTAAATAGGAAGGAAGGAGAGT 60.070 42.308 0.00 0.00 0.00 3.24
846 847 6.350103 GGTGTTAAATAGGAAGGAAGGAGAG 58.650 44.000 0.00 0.00 0.00 3.20
847 848 5.105064 CGGTGTTAAATAGGAAGGAAGGAGA 60.105 44.000 0.00 0.00 0.00 3.71
848 849 5.116882 CGGTGTTAAATAGGAAGGAAGGAG 58.883 45.833 0.00 0.00 0.00 3.69
852 853 3.264104 CGCGGTGTTAAATAGGAAGGAA 58.736 45.455 0.00 0.00 0.00 3.36
857 858 0.462403 GGGCGCGGTGTTAAATAGGA 60.462 55.000 8.83 0.00 0.00 2.94
913 919 1.599576 GGTTGGAGGAGAGGAGCAC 59.400 63.158 0.00 0.00 0.00 4.40
939 945 4.065281 GAGGTAGTGCGTGGGCGT 62.065 66.667 0.00 0.00 44.10 5.68
951 959 2.019272 GGAGGGAGGGAGGGAGGTA 61.019 68.421 0.00 0.00 0.00 3.08
952 960 3.369388 GGAGGGAGGGAGGGAGGT 61.369 72.222 0.00 0.00 0.00 3.85
953 961 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1073 1100 4.783621 TGAGCACGATGGGCTGGC 62.784 66.667 0.00 0.00 42.78 4.85
1191 1238 8.962679 AGAAATTACACTAGTCCTACAGAGAAG 58.037 37.037 0.00 0.00 0.00 2.85
1196 1243 7.259161 GGTCAGAAATTACACTAGTCCTACAG 58.741 42.308 0.00 0.00 0.00 2.74
1200 1247 4.771054 ACGGTCAGAAATTACACTAGTCCT 59.229 41.667 0.00 0.00 0.00 3.85
1201 1248 5.069501 ACGGTCAGAAATTACACTAGTCC 57.930 43.478 0.00 0.00 0.00 3.85
1202 1249 6.617953 GCAAACGGTCAGAAATTACACTAGTC 60.618 42.308 0.00 0.00 0.00 2.59
1205 1252 4.453136 GGCAAACGGTCAGAAATTACACTA 59.547 41.667 0.00 0.00 0.00 2.74
1207 1254 3.252458 AGGCAAACGGTCAGAAATTACAC 59.748 43.478 0.00 0.00 0.00 2.90
1210 1257 6.827586 ATTAAGGCAAACGGTCAGAAATTA 57.172 33.333 0.00 0.00 0.00 1.40
1211 1258 5.722021 ATTAAGGCAAACGGTCAGAAATT 57.278 34.783 0.00 0.00 0.00 1.82
1212 1259 5.722021 AATTAAGGCAAACGGTCAGAAAT 57.278 34.783 0.00 0.00 0.00 2.17
1230 1279 2.083774 CGCCTGCAGAGAACCAAATTA 58.916 47.619 17.39 0.00 0.00 1.40
1231 1280 0.883833 CGCCTGCAGAGAACCAAATT 59.116 50.000 17.39 0.00 0.00 1.82
1232 1281 0.250901 ACGCCTGCAGAGAACCAAAT 60.251 50.000 17.39 0.00 0.00 2.32
1233 1282 1.148273 ACGCCTGCAGAGAACCAAA 59.852 52.632 17.39 0.00 0.00 3.28
1237 1286 1.739562 CTCCACGCCTGCAGAGAAC 60.740 63.158 17.39 0.25 0.00 3.01
1270 1319 3.284449 ACCTTGTTTGCCGCCGTC 61.284 61.111 0.00 0.00 0.00 4.79
1315 1364 1.274126 CGATGCGCTCCTTGATCTCG 61.274 60.000 9.73 0.00 0.00 4.04
1381 1430 0.179004 TGTTGTCCTTGTTGGGCGAT 60.179 50.000 0.00 0.00 45.26 4.58
1401 1450 1.133915 TGTTGTCCTTGTCCTTGTCCC 60.134 52.381 0.00 0.00 0.00 4.46
1405 1454 1.338020 GCCTTGTTGTCCTTGTCCTTG 59.662 52.381 0.00 0.00 0.00 3.61
1408 1457 1.515521 CGGCCTTGTTGTCCTTGTCC 61.516 60.000 0.00 0.00 0.00 4.02
1661 1728 6.015918 TCAAGGAAAAAGGGCAAGATGAATA 58.984 36.000 0.00 0.00 0.00 1.75
1816 1883 6.388619 ACTAAATGATTCCTTGTACCAGGT 57.611 37.500 12.50 0.00 35.15 4.00
1824 1891 6.976925 GCAAGATCCAACTAAATGATTCCTTG 59.023 38.462 0.00 0.00 0.00 3.61
1836 1903 4.041567 TCAGTTTCCAGCAAGATCCAACTA 59.958 41.667 0.00 0.00 0.00 2.24
1842 1909 3.434984 GTCAGTCAGTTTCCAGCAAGATC 59.565 47.826 0.00 0.00 0.00 2.75
2041 2112 0.109873 TTCTTCTCGCCGTCGTCTTC 60.110 55.000 0.00 0.00 36.96 2.87
2088 2159 1.964373 GTCCTTCTTTTCGCCGCCA 60.964 57.895 0.00 0.00 0.00 5.69
2434 2508 1.811266 CATACTGCTTGCGGCGACT 60.811 57.895 12.98 0.00 45.43 4.18
2435 2509 1.358725 TTCATACTGCTTGCGGCGAC 61.359 55.000 12.98 2.02 45.43 5.19
2443 2517 5.809001 TCTCTGGTTTGATTCATACTGCTT 58.191 37.500 7.11 0.00 0.00 3.91
2444 2518 5.426689 TCTCTGGTTTGATTCATACTGCT 57.573 39.130 7.11 0.00 0.00 4.24
2445 2519 5.448360 GCTTCTCTGGTTTGATTCATACTGC 60.448 44.000 7.11 0.00 0.00 4.40
2446 2520 5.645067 TGCTTCTCTGGTTTGATTCATACTG 59.355 40.000 7.11 2.25 0.00 2.74
2447 2521 5.645497 GTGCTTCTCTGGTTTGATTCATACT 59.355 40.000 7.11 0.00 0.00 2.12
2448 2522 5.446473 CGTGCTTCTCTGGTTTGATTCATAC 60.446 44.000 0.00 0.00 0.00 2.39
2449 2523 4.631377 CGTGCTTCTCTGGTTTGATTCATA 59.369 41.667 0.00 0.00 0.00 2.15
2450 2524 3.438087 CGTGCTTCTCTGGTTTGATTCAT 59.562 43.478 0.00 0.00 0.00 2.57
2451 2525 2.807967 CGTGCTTCTCTGGTTTGATTCA 59.192 45.455 0.00 0.00 0.00 2.57
2452 2526 2.160417 CCGTGCTTCTCTGGTTTGATTC 59.840 50.000 0.00 0.00 0.00 2.52
2483 2559 3.335534 CTAATGGTACCGCGCGCC 61.336 66.667 27.36 21.31 0.00 6.53
2558 2634 2.969238 GGGATCGCTGTCGCCATG 60.969 66.667 1.84 0.00 35.26 3.66
2675 2752 1.027357 AATGGAGCACCGATTCATGC 58.973 50.000 0.00 2.40 42.39 4.06
2738 2815 7.386299 AGCTAACATATAAACTGTAGCAGATGC 59.614 37.037 2.91 0.00 42.49 3.91
2739 2816 8.824159 AGCTAACATATAAACTGTAGCAGATG 57.176 34.615 2.91 0.00 35.18 2.90
2740 2817 9.265901 CAAGCTAACATATAAACTGTAGCAGAT 57.734 33.333 2.91 0.00 35.18 2.90
2741 2818 8.258007 ACAAGCTAACATATAAACTGTAGCAGA 58.742 33.333 2.91 0.00 35.18 4.26
2742 2819 8.425577 ACAAGCTAACATATAAACTGTAGCAG 57.574 34.615 0.00 0.00 37.52 4.24
2743 2820 8.664798 CAACAAGCTAACATATAAACTGTAGCA 58.335 33.333 0.00 0.00 31.47 3.49
2744 2821 8.122952 CCAACAAGCTAACATATAAACTGTAGC 58.877 37.037 0.00 0.00 0.00 3.58
2745 2822 9.162764 ACCAACAAGCTAACATATAAACTGTAG 57.837 33.333 0.00 0.00 0.00 2.74
2747 2824 7.996098 ACCAACAAGCTAACATATAAACTGT 57.004 32.000 0.00 0.00 0.00 3.55
2754 2831 9.965824 GCATATTTTACCAACAAGCTAACATAT 57.034 29.630 0.00 0.00 0.00 1.78
2755 2832 8.410141 GGCATATTTTACCAACAAGCTAACATA 58.590 33.333 0.00 0.00 0.00 2.29
2756 2833 7.093552 TGGCATATTTTACCAACAAGCTAACAT 60.094 33.333 0.00 0.00 0.00 2.71
2757 2834 6.209589 TGGCATATTTTACCAACAAGCTAACA 59.790 34.615 0.00 0.00 0.00 2.41
2758 2835 6.626302 TGGCATATTTTACCAACAAGCTAAC 58.374 36.000 0.00 0.00 0.00 2.34
2759 2836 6.842437 TGGCATATTTTACCAACAAGCTAA 57.158 33.333 0.00 0.00 0.00 3.09
2760 2837 6.379703 ACATGGCATATTTTACCAACAAGCTA 59.620 34.615 0.00 0.00 36.94 3.32
2761 2838 5.187576 ACATGGCATATTTTACCAACAAGCT 59.812 36.000 0.00 0.00 36.94 3.74
2762 2839 5.418676 ACATGGCATATTTTACCAACAAGC 58.581 37.500 0.00 0.00 36.94 4.01
2763 2840 6.629128 TGACATGGCATATTTTACCAACAAG 58.371 36.000 0.00 0.00 36.94 3.16
2764 2841 6.596309 TGACATGGCATATTTTACCAACAA 57.404 33.333 0.00 0.00 36.94 2.83
2765 2842 6.379417 TGATGACATGGCATATTTTACCAACA 59.621 34.615 15.77 0.61 36.94 3.33
2766 2843 6.804677 TGATGACATGGCATATTTTACCAAC 58.195 36.000 15.77 0.00 36.94 3.77
2767 2844 7.415592 TTGATGACATGGCATATTTTACCAA 57.584 32.000 15.77 9.72 36.94 3.67
2768 2845 7.093596 TGTTTGATGACATGGCATATTTTACCA 60.094 33.333 15.77 3.07 37.99 3.25
2769 2846 7.264221 TGTTTGATGACATGGCATATTTTACC 58.736 34.615 15.77 0.00 0.00 2.85
2770 2847 8.700722 TTGTTTGATGACATGGCATATTTTAC 57.299 30.769 15.77 9.14 0.00 2.01
2773 2850 9.701098 GATATTGTTTGATGACATGGCATATTT 57.299 29.630 15.77 0.00 0.00 1.40
2774 2851 9.085645 AGATATTGTTTGATGACATGGCATATT 57.914 29.630 15.77 0.00 0.00 1.28
2775 2852 8.645814 AGATATTGTTTGATGACATGGCATAT 57.354 30.769 15.77 5.71 0.00 1.78
2776 2853 8.467963 AAGATATTGTTTGATGACATGGCATA 57.532 30.769 15.77 0.00 0.00 3.14
2777 2854 6.971726 AGATATTGTTTGATGACATGGCAT 57.028 33.333 15.73 15.73 0.00 4.40
2778 2855 6.778834 AAGATATTGTTTGATGACATGGCA 57.221 33.333 2.18 2.18 0.00 4.92
2779 2856 8.190122 TGTTAAGATATTGTTTGATGACATGGC 58.810 33.333 0.00 0.00 0.00 4.40
2814 2891 9.127277 GGGCATACTAAATACAACCTATTTGAA 57.873 33.333 0.00 0.00 38.73 2.69
2815 2892 8.275758 TGGGCATACTAAATACAACCTATTTGA 58.724 33.333 0.00 0.00 38.73 2.69
2816 2893 8.458573 TGGGCATACTAAATACAACCTATTTG 57.541 34.615 0.00 0.00 41.49 2.32
2817 2894 9.654919 ATTGGGCATACTAAATACAACCTATTT 57.345 29.630 0.00 0.00 0.00 1.40
2820 2897 9.787435 CTTATTGGGCATACTAAATACAACCTA 57.213 33.333 0.00 0.00 0.00 3.08
2821 2898 8.499406 TCTTATTGGGCATACTAAATACAACCT 58.501 33.333 0.00 0.00 0.00 3.50
2822 2899 8.685838 TCTTATTGGGCATACTAAATACAACC 57.314 34.615 0.00 0.00 0.00 3.77
2824 2901 9.860650 ACATCTTATTGGGCATACTAAATACAA 57.139 29.630 0.00 0.00 0.00 2.41
2825 2902 9.283768 CACATCTTATTGGGCATACTAAATACA 57.716 33.333 0.00 0.00 0.00 2.29
2826 2903 9.502091 TCACATCTTATTGGGCATACTAAATAC 57.498 33.333 0.00 0.00 0.00 1.89
2827 2904 9.725019 CTCACATCTTATTGGGCATACTAAATA 57.275 33.333 0.00 0.00 0.00 1.40
2828 2905 8.439971 TCTCACATCTTATTGGGCATACTAAAT 58.560 33.333 0.00 0.00 0.00 1.40
2829 2906 7.801104 TCTCACATCTTATTGGGCATACTAAA 58.199 34.615 0.00 0.00 0.00 1.85
2830 2907 7.373617 TCTCACATCTTATTGGGCATACTAA 57.626 36.000 0.00 0.00 0.00 2.24
2831 2908 6.994421 TCTCACATCTTATTGGGCATACTA 57.006 37.500 0.00 0.00 0.00 1.82
2832 2909 5.894298 TCTCACATCTTATTGGGCATACT 57.106 39.130 0.00 0.00 0.00 2.12
2833 2910 8.798859 ATTATCTCACATCTTATTGGGCATAC 57.201 34.615 0.00 0.00 0.00 2.39
2835 2912 9.812347 TTTATTATCTCACATCTTATTGGGCAT 57.188 29.630 0.00 0.00 0.00 4.40
2836 2913 9.812347 ATTTATTATCTCACATCTTATTGGGCA 57.188 29.630 0.00 0.00 0.00 5.36
2845 2922 9.717942 GAGCACCTTATTTATTATCTCACATCT 57.282 33.333 0.00 0.00 0.00 2.90
2846 2923 9.717942 AGAGCACCTTATTTATTATCTCACATC 57.282 33.333 0.00 0.00 0.00 3.06
2848 2925 9.905713 AAAGAGCACCTTATTTATTATCTCACA 57.094 29.630 0.00 0.00 34.00 3.58
2857 2934 9.905713 TGTAGAATGAAAGAGCACCTTATTTAT 57.094 29.630 0.00 0.00 34.00 1.40
2858 2935 9.905713 ATGTAGAATGAAAGAGCACCTTATTTA 57.094 29.630 0.00 0.00 34.00 1.40
2859 2936 8.814038 ATGTAGAATGAAAGAGCACCTTATTT 57.186 30.769 0.00 0.00 34.00 1.40
2860 2937 8.680903 CAATGTAGAATGAAAGAGCACCTTATT 58.319 33.333 0.00 0.00 34.00 1.40
2861 2938 8.049117 TCAATGTAGAATGAAAGAGCACCTTAT 58.951 33.333 0.00 0.00 34.00 1.73
2862 2939 7.394016 TCAATGTAGAATGAAAGAGCACCTTA 58.606 34.615 0.00 0.00 34.00 2.69
2863 2940 6.240894 TCAATGTAGAATGAAAGAGCACCTT 58.759 36.000 0.00 0.00 36.47 3.50
2864 2941 5.809001 TCAATGTAGAATGAAAGAGCACCT 58.191 37.500 0.00 0.00 0.00 4.00
2865 2942 6.500684 TTCAATGTAGAATGAAAGAGCACC 57.499 37.500 0.00 0.00 32.89 5.01
2866 2943 6.026513 GCTTCAATGTAGAATGAAAGAGCAC 58.973 40.000 0.00 0.00 35.31 4.40
2867 2944 5.942236 AGCTTCAATGTAGAATGAAAGAGCA 59.058 36.000 3.71 0.00 35.31 4.26
2868 2945 6.434018 AGCTTCAATGTAGAATGAAAGAGC 57.566 37.500 0.00 0.00 35.31 4.09
2869 2946 7.749570 CACAAGCTTCAATGTAGAATGAAAGAG 59.250 37.037 0.00 0.00 35.31 2.85
2870 2947 7.229306 ACACAAGCTTCAATGTAGAATGAAAGA 59.771 33.333 0.00 0.00 35.31 2.52
2871 2948 7.365741 ACACAAGCTTCAATGTAGAATGAAAG 58.634 34.615 0.00 0.00 35.31 2.62
2872 2949 7.275888 ACACAAGCTTCAATGTAGAATGAAA 57.724 32.000 0.00 0.00 35.31 2.69
2873 2950 6.882610 ACACAAGCTTCAATGTAGAATGAA 57.117 33.333 0.00 0.00 34.57 2.57
2874 2951 7.977789 TTACACAAGCTTCAATGTAGAATGA 57.022 32.000 12.25 0.00 0.00 2.57
2875 2952 7.699391 CCATTACACAAGCTTCAATGTAGAATG 59.301 37.037 15.70 15.70 34.16 2.67
2876 2953 7.148018 CCCATTACACAAGCTTCAATGTAGAAT 60.148 37.037 12.25 6.21 0.00 2.40
2877 2954 6.150976 CCCATTACACAAGCTTCAATGTAGAA 59.849 38.462 12.25 4.61 0.00 2.10
2878 2955 5.647658 CCCATTACACAAGCTTCAATGTAGA 59.352 40.000 12.25 6.93 0.00 2.59
2879 2956 5.415701 ACCCATTACACAAGCTTCAATGTAG 59.584 40.000 12.25 8.75 0.00 2.74
2880 2957 5.182950 CACCCATTACACAAGCTTCAATGTA 59.817 40.000 0.00 3.25 0.00 2.29
2881 2958 4.022068 CACCCATTACACAAGCTTCAATGT 60.022 41.667 11.24 11.24 0.00 2.71
2882 2959 4.022068 ACACCCATTACACAAGCTTCAATG 60.022 41.667 0.00 4.47 0.00 2.82
2883 2960 4.151883 ACACCCATTACACAAGCTTCAAT 58.848 39.130 0.00 0.00 0.00 2.57
2884 2961 3.561143 ACACCCATTACACAAGCTTCAA 58.439 40.909 0.00 0.00 0.00 2.69
2885 2962 3.222173 ACACCCATTACACAAGCTTCA 57.778 42.857 0.00 0.00 0.00 3.02
2886 2963 3.305335 CCAACACCCATTACACAAGCTTC 60.305 47.826 0.00 0.00 0.00 3.86
2887 2964 2.627699 CCAACACCCATTACACAAGCTT 59.372 45.455 0.00 0.00 0.00 3.74
2888 2965 2.238521 CCAACACCCATTACACAAGCT 58.761 47.619 0.00 0.00 0.00 3.74
2889 2966 1.960689 ACCAACACCCATTACACAAGC 59.039 47.619 0.00 0.00 0.00 4.01
2890 2967 4.664150 AAACCAACACCCATTACACAAG 57.336 40.909 0.00 0.00 0.00 3.16
2891 2968 6.732896 AATAAACCAACACCCATTACACAA 57.267 33.333 0.00 0.00 0.00 3.33
2892 2969 6.776116 TGTAATAAACCAACACCCATTACACA 59.224 34.615 0.00 0.00 35.21 3.72
2893 2970 7.216973 TGTAATAAACCAACACCCATTACAC 57.783 36.000 0.00 0.00 35.21 2.90
2894 2971 8.958506 GTATGTAATAAACCAACACCCATTACA 58.041 33.333 7.25 7.25 40.88 2.41
2895 2972 8.958506 TGTATGTAATAAACCAACACCCATTAC 58.041 33.333 0.00 0.00 32.21 1.89
2896 2973 9.529823 TTGTATGTAATAAACCAACACCCATTA 57.470 29.630 0.00 0.00 0.00 1.90
2897 2974 8.308207 GTTGTATGTAATAAACCAACACCCATT 58.692 33.333 0.00 0.00 34.96 3.16
2898 2975 7.451877 TGTTGTATGTAATAAACCAACACCCAT 59.548 33.333 0.00 0.00 37.96 4.00
2899 2976 6.776116 TGTTGTATGTAATAAACCAACACCCA 59.224 34.615 0.00 0.00 37.96 4.51
2900 2977 7.216973 TGTTGTATGTAATAAACCAACACCC 57.783 36.000 0.00 0.00 37.96 4.61
2901 2978 9.699703 AAATGTTGTATGTAATAAACCAACACC 57.300 29.630 5.28 0.00 42.35 4.16
2912 2989 9.965902 AGGAAAGAGAGAAATGTTGTATGTAAT 57.034 29.630 0.00 0.00 0.00 1.89
2913 2990 9.436957 GAGGAAAGAGAGAAATGTTGTATGTAA 57.563 33.333 0.00 0.00 0.00 2.41
2914 2991 8.593679 TGAGGAAAGAGAGAAATGTTGTATGTA 58.406 33.333 0.00 0.00 0.00 2.29
2915 2992 7.453393 TGAGGAAAGAGAGAAATGTTGTATGT 58.547 34.615 0.00 0.00 0.00 2.29
2916 2993 7.912056 TGAGGAAAGAGAGAAATGTTGTATG 57.088 36.000 0.00 0.00 0.00 2.39
2917 2994 9.525826 AAATGAGGAAAGAGAGAAATGTTGTAT 57.474 29.630 0.00 0.00 0.00 2.29
2918 2995 8.924511 AAATGAGGAAAGAGAGAAATGTTGTA 57.075 30.769 0.00 0.00 0.00 2.41
2919 2996 7.830099 AAATGAGGAAAGAGAGAAATGTTGT 57.170 32.000 0.00 0.00 0.00 3.32
2922 2999 8.465201 GCAATAAATGAGGAAAGAGAGAAATGT 58.535 33.333 0.00 0.00 0.00 2.71
2923 3000 8.464404 TGCAATAAATGAGGAAAGAGAGAAATG 58.536 33.333 0.00 0.00 0.00 2.32
2924 3001 8.585471 TGCAATAAATGAGGAAAGAGAGAAAT 57.415 30.769 0.00 0.00 0.00 2.17
2925 3002 8.464404 CATGCAATAAATGAGGAAAGAGAGAAA 58.536 33.333 0.00 0.00 0.00 2.52
2926 3003 7.830697 TCATGCAATAAATGAGGAAAGAGAGAA 59.169 33.333 0.00 0.00 30.61 2.87
2927 3004 7.281774 GTCATGCAATAAATGAGGAAAGAGAGA 59.718 37.037 0.00 0.00 34.78 3.10
2928 3005 7.066645 TGTCATGCAATAAATGAGGAAAGAGAG 59.933 37.037 0.00 0.00 34.78 3.20
2929 3006 6.885918 TGTCATGCAATAAATGAGGAAAGAGA 59.114 34.615 0.00 0.00 34.78 3.10
2930 3007 6.971184 GTGTCATGCAATAAATGAGGAAAGAG 59.029 38.462 0.00 0.00 34.78 2.85
2931 3008 6.433716 TGTGTCATGCAATAAATGAGGAAAGA 59.566 34.615 0.00 0.00 34.78 2.52
2932 3009 6.623486 TGTGTCATGCAATAAATGAGGAAAG 58.377 36.000 0.00 0.00 34.78 2.62
2933 3010 6.587206 TGTGTCATGCAATAAATGAGGAAA 57.413 33.333 0.00 0.00 34.78 3.13
2934 3011 6.377712 TGATGTGTCATGCAATAAATGAGGAA 59.622 34.615 0.00 0.00 34.78 3.36
2935 3012 5.887035 TGATGTGTCATGCAATAAATGAGGA 59.113 36.000 0.00 0.00 34.78 3.71
2936 3013 6.139048 TGATGTGTCATGCAATAAATGAGG 57.861 37.500 0.00 0.00 34.78 3.86
2937 3014 7.422399 TGATGATGTGTCATGCAATAAATGAG 58.578 34.615 0.00 0.00 44.96 2.90
2938 3015 7.336161 TGATGATGTGTCATGCAATAAATGA 57.664 32.000 0.00 0.00 44.96 2.57
2939 3016 7.995463 TTGATGATGTGTCATGCAATAAATG 57.005 32.000 0.00 0.00 44.96 2.32
2940 3017 9.438228 TTTTTGATGATGTGTCATGCAATAAAT 57.562 25.926 0.00 0.00 44.96 1.40
2941 3018 8.828688 TTTTTGATGATGTGTCATGCAATAAA 57.171 26.923 0.00 3.15 44.96 1.40
2942 3019 9.438228 AATTTTTGATGATGTGTCATGCAATAA 57.562 25.926 0.00 3.50 44.96 1.40
2943 3020 9.089601 GAATTTTTGATGATGTGTCATGCAATA 57.910 29.630 0.00 0.00 44.96 1.90
2944 3021 7.822334 AGAATTTTTGATGATGTGTCATGCAAT 59.178 29.630 0.00 0.00 44.96 3.56
2945 3022 7.156000 AGAATTTTTGATGATGTGTCATGCAA 58.844 30.769 0.00 0.00 44.96 4.08
2946 3023 6.693466 AGAATTTTTGATGATGTGTCATGCA 58.307 32.000 0.00 0.00 44.96 3.96
2947 3024 8.752254 CATAGAATTTTTGATGATGTGTCATGC 58.248 33.333 0.00 0.00 44.96 4.06
2948 3025 9.797556 ACATAGAATTTTTGATGATGTGTCATG 57.202 29.630 0.00 0.00 44.96 3.07
2950 3027 9.012161 TCACATAGAATTTTTGATGATGTGTCA 57.988 29.630 10.81 0.00 42.02 3.58
2967 3044 9.431887 GTTGTTGGTAGACTTTATCACATAGAA 57.568 33.333 0.00 0.00 0.00 2.10
2968 3045 8.812972 AGTTGTTGGTAGACTTTATCACATAGA 58.187 33.333 0.00 0.00 0.00 1.98
2971 3048 9.601217 GATAGTTGTTGGTAGACTTTATCACAT 57.399 33.333 0.00 0.00 0.00 3.21
2972 3049 8.812972 AGATAGTTGTTGGTAGACTTTATCACA 58.187 33.333 0.00 0.00 0.00 3.58
2973 3050 9.654663 AAGATAGTTGTTGGTAGACTTTATCAC 57.345 33.333 0.00 0.00 0.00 3.06
2995 3072 9.120658 TCAGGGGATCTTCAATGATTATAAGAT 57.879 33.333 12.22 12.22 40.47 2.40
2996 3073 8.510358 TCAGGGGATCTTCAATGATTATAAGA 57.490 34.615 5.07 5.07 32.85 2.10
2997 3074 7.828223 CCTCAGGGGATCTTCAATGATTATAAG 59.172 40.741 0.00 0.00 37.23 1.73
2998 3075 7.295672 ACCTCAGGGGATCTTCAATGATTATAA 59.704 37.037 0.00 0.00 38.76 0.98
2999 3076 6.794493 ACCTCAGGGGATCTTCAATGATTATA 59.206 38.462 0.00 0.00 38.76 0.98
3000 3077 5.614402 ACCTCAGGGGATCTTCAATGATTAT 59.386 40.000 0.00 0.00 38.76 1.28
3001 3078 4.977739 ACCTCAGGGGATCTTCAATGATTA 59.022 41.667 0.00 0.00 38.76 1.75
3002 3079 3.790408 ACCTCAGGGGATCTTCAATGATT 59.210 43.478 0.00 0.00 38.76 2.57
3003 3080 3.393941 GACCTCAGGGGATCTTCAATGAT 59.606 47.826 0.00 0.00 38.76 2.45
3004 3081 2.774234 GACCTCAGGGGATCTTCAATGA 59.226 50.000 0.00 0.00 38.76 2.57
3005 3082 2.507058 TGACCTCAGGGGATCTTCAATG 59.493 50.000 0.00 0.00 38.76 2.82
3006 3083 2.850833 TGACCTCAGGGGATCTTCAAT 58.149 47.619 0.00 0.00 38.76 2.57
3007 3084 2.342406 TGACCTCAGGGGATCTTCAA 57.658 50.000 0.00 0.00 38.76 2.69
3008 3085 2.402564 GATGACCTCAGGGGATCTTCA 58.597 52.381 0.00 0.00 38.76 3.02
3009 3086 1.342819 CGATGACCTCAGGGGATCTTC 59.657 57.143 0.00 0.00 38.76 2.87
3010 3087 1.062886 TCGATGACCTCAGGGGATCTT 60.063 52.381 0.00 0.00 38.76 2.40
3011 3088 0.558220 TCGATGACCTCAGGGGATCT 59.442 55.000 0.00 0.00 38.76 2.75
3012 3089 0.676736 GTCGATGACCTCAGGGGATC 59.323 60.000 0.00 0.00 38.76 3.36
3013 3090 1.109920 CGTCGATGACCTCAGGGGAT 61.110 60.000 0.00 0.00 38.76 3.85
3014 3091 1.753078 CGTCGATGACCTCAGGGGA 60.753 63.158 0.00 0.00 38.76 4.81
3015 3092 1.605058 AACGTCGATGACCTCAGGGG 61.605 60.000 12.58 0.00 41.89 4.79
3016 3093 0.246635 AAACGTCGATGACCTCAGGG 59.753 55.000 12.58 0.00 38.88 4.45
3017 3094 1.993370 GAAAACGTCGATGACCTCAGG 59.007 52.381 12.58 0.00 0.00 3.86
3018 3095 2.947852 AGAAAACGTCGATGACCTCAG 58.052 47.619 12.58 0.00 0.00 3.35
3019 3096 3.380479 AAGAAAACGTCGATGACCTCA 57.620 42.857 12.58 0.00 0.00 3.86
3020 3097 4.727235 AAAAGAAAACGTCGATGACCTC 57.273 40.909 12.58 4.23 0.00 3.85
3046 3123 3.459145 TCAACGTCGATGACCTCAAAAA 58.541 40.909 12.58 0.00 0.00 1.94
3047 3124 3.100658 TCAACGTCGATGACCTCAAAA 57.899 42.857 12.58 0.00 0.00 2.44
3048 3125 2.804697 TCAACGTCGATGACCTCAAA 57.195 45.000 12.58 0.00 0.00 2.69
3049 3126 2.230266 TGATCAACGTCGATGACCTCAA 59.770 45.455 12.58 0.00 0.00 3.02
3128 3211 0.804989 CCTTCGAGCCGCAAAAAGAT 59.195 50.000 0.00 0.00 0.00 2.40
3136 3219 1.792118 AAACAAACCCTTCGAGCCGC 61.792 55.000 0.00 0.00 0.00 6.53
3143 3226 5.414765 ACCATCGAGATAAAACAAACCCTTC 59.585 40.000 0.00 0.00 0.00 3.46
3206 3289 1.148310 AGCAAACATCCAAGACGTCG 58.852 50.000 10.46 0.00 0.00 5.12
3247 3330 6.792250 CACTAGCAGCGCATATAAATAAACAC 59.208 38.462 11.47 0.00 0.00 3.32
3248 3331 6.481976 ACACTAGCAGCGCATATAAATAAACA 59.518 34.615 11.47 0.00 0.00 2.83
3249 3332 6.792250 CACACTAGCAGCGCATATAAATAAAC 59.208 38.462 11.47 0.00 0.00 2.01
3264 3348 0.615331 ACACCATCCCACACTAGCAG 59.385 55.000 0.00 0.00 0.00 4.24
3271 3355 0.998928 ATTAGCCACACCATCCCACA 59.001 50.000 0.00 0.00 0.00 4.17
3327 3411 1.581934 CACGCAAGAACAGGACAAGA 58.418 50.000 0.00 0.00 43.62 3.02
3329 3413 0.107410 ACCACGCAAGAACAGGACAA 60.107 50.000 0.00 0.00 43.62 3.18
3334 3418 1.003545 CTTGACACCACGCAAGAACAG 60.004 52.381 0.00 0.00 43.11 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.