Multiple sequence alignment - TraesCS1A01G139000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G139000 chr1A 100.000 2213 0 0 1 2213 234159566 234157354 0.000000e+00 4087.0
1 TraesCS1A01G139000 chr1A 87.946 224 23 4 761 983 320500648 320500428 6.060000e-66 261.0
2 TraesCS1A01G139000 chrUn 98.460 909 14 0 1305 2213 297319221 297320129 0.000000e+00 1602.0
3 TraesCS1A01G139000 chrUn 98.460 909 14 0 1305 2213 354671151 354672059 0.000000e+00 1602.0
4 TraesCS1A01G139000 chrUn 93.333 45 2 1 730 774 287081325 287081368 5.100000e-07 65.8
5 TraesCS1A01G139000 chrUn 93.333 45 2 1 730 774 287084972 287084929 5.100000e-07 65.8
6 TraesCS1A01G139000 chrUn 93.333 45 2 1 730 774 294093535 294093492 5.100000e-07 65.8
7 TraesCS1A01G139000 chr4A 98.031 914 17 1 1301 2213 59877474 59878387 0.000000e+00 1587.0
8 TraesCS1A01G139000 chr4A 91.633 741 49 7 1 732 164029197 164029933 0.000000e+00 1013.0
9 TraesCS1A01G139000 chr5A 98.128 908 17 0 1306 2213 52250578 52249671 0.000000e+00 1583.0
10 TraesCS1A01G139000 chr3B 98.128 908 17 0 1306 2213 90150923 90151830 0.000000e+00 1583.0
11 TraesCS1A01G139000 chr1B 98.130 909 16 1 1306 2213 44243008 44243916 0.000000e+00 1583.0
12 TraesCS1A01G139000 chr1B 97.912 910 18 1 1305 2213 649041862 649040953 0.000000e+00 1574.0
13 TraesCS1A01G139000 chr7A 97.819 917 19 1 1298 2213 71154741 71153825 0.000000e+00 1581.0
14 TraesCS1A01G139000 chr5B 97.921 914 17 2 1301 2213 695761920 695762832 0.000000e+00 1581.0
15 TraesCS1A01G139000 chr4D 92.769 733 48 5 1 731 398531954 398531225 0.000000e+00 1055.0
16 TraesCS1A01G139000 chr5D 92.603 730 52 2 3 731 494171732 494171004 0.000000e+00 1048.0
17 TraesCS1A01G139000 chr5D 91.803 732 56 4 1 731 90392317 90393045 0.000000e+00 1016.0
18 TraesCS1A01G139000 chr3D 92.329 730 52 4 1 729 188312205 188311479 0.000000e+00 1035.0
19 TraesCS1A01G139000 chr3D 91.918 730 56 3 1 729 458511839 458512566 0.000000e+00 1018.0
20 TraesCS1A01G139000 chr3D 91.667 732 58 3 1 729 253754261 253754992 0.000000e+00 1011.0
21 TraesCS1A01G139000 chr7D 92.105 722 55 2 1 721 97337187 97336467 0.000000e+00 1016.0
22 TraesCS1A01G139000 chr2D 91.803 732 56 4 1 731 338570268 338570996 0.000000e+00 1016.0
23 TraesCS1A01G139000 chr1D 88.177 406 32 4 730 1119 180838272 180837867 9.250000e-129 470.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G139000 chr1A 234157354 234159566 2212 True 4087 4087 100.000 1 2213 1 chr1A.!!$R1 2212
1 TraesCS1A01G139000 chrUn 297319221 297320129 908 False 1602 1602 98.460 1305 2213 1 chrUn.!!$F2 908
2 TraesCS1A01G139000 chrUn 354671151 354672059 908 False 1602 1602 98.460 1305 2213 1 chrUn.!!$F3 908
3 TraesCS1A01G139000 chr4A 59877474 59878387 913 False 1587 1587 98.031 1301 2213 1 chr4A.!!$F1 912
4 TraesCS1A01G139000 chr4A 164029197 164029933 736 False 1013 1013 91.633 1 732 1 chr4A.!!$F2 731
5 TraesCS1A01G139000 chr5A 52249671 52250578 907 True 1583 1583 98.128 1306 2213 1 chr5A.!!$R1 907
6 TraesCS1A01G139000 chr3B 90150923 90151830 907 False 1583 1583 98.128 1306 2213 1 chr3B.!!$F1 907
7 TraesCS1A01G139000 chr1B 44243008 44243916 908 False 1583 1583 98.130 1306 2213 1 chr1B.!!$F1 907
8 TraesCS1A01G139000 chr1B 649040953 649041862 909 True 1574 1574 97.912 1305 2213 1 chr1B.!!$R1 908
9 TraesCS1A01G139000 chr7A 71153825 71154741 916 True 1581 1581 97.819 1298 2213 1 chr7A.!!$R1 915
10 TraesCS1A01G139000 chr5B 695761920 695762832 912 False 1581 1581 97.921 1301 2213 1 chr5B.!!$F1 912
11 TraesCS1A01G139000 chr4D 398531225 398531954 729 True 1055 1055 92.769 1 731 1 chr4D.!!$R1 730
12 TraesCS1A01G139000 chr5D 494171004 494171732 728 True 1048 1048 92.603 3 731 1 chr5D.!!$R1 728
13 TraesCS1A01G139000 chr5D 90392317 90393045 728 False 1016 1016 91.803 1 731 1 chr5D.!!$F1 730
14 TraesCS1A01G139000 chr3D 188311479 188312205 726 True 1035 1035 92.329 1 729 1 chr3D.!!$R1 728
15 TraesCS1A01G139000 chr3D 458511839 458512566 727 False 1018 1018 91.918 1 729 1 chr3D.!!$F2 728
16 TraesCS1A01G139000 chr3D 253754261 253754992 731 False 1011 1011 91.667 1 729 1 chr3D.!!$F1 728
17 TraesCS1A01G139000 chr7D 97336467 97337187 720 True 1016 1016 92.105 1 721 1 chr7D.!!$R1 720
18 TraesCS1A01G139000 chr2D 338570268 338570996 728 False 1016 1016 91.803 1 731 1 chr2D.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 889 0.040499 TTAATTCACAGGGGGCCCAC 59.96 55.0 26.86 23.59 38.92 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1797 1.135774 TCACGTAGCAGTACTGAAGCG 60.136 52.381 27.08 24.29 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.160822 ATTCATCGGATCTCGGCAAG 57.839 50.000 0.00 0.00 39.77 4.01
220 225 0.606401 CGGAGAGGCAATGGTGTTGT 60.606 55.000 0.00 0.00 0.00 3.32
249 255 1.399744 CCTCCGTGATCGAATCCCCA 61.400 60.000 0.00 0.00 39.71 4.96
255 261 1.417890 GTGATCGAATCCCCATCTGGT 59.582 52.381 0.00 0.00 0.00 4.00
264 270 1.763770 CCCATCTGGTAGGATGCCC 59.236 63.158 0.00 0.00 41.90 5.36
457 466 2.829384 GCACCCTCCACCCTTGTGA 61.829 63.158 0.00 0.00 45.76 3.58
484 493 0.884704 GTGGCTCTTCCGACTTGCAA 60.885 55.000 0.00 0.00 37.80 4.08
578 587 6.671614 TTTCTGCGAAACTCTAAAACAAGA 57.328 33.333 0.00 0.00 0.00 3.02
613 628 3.235200 CTGGCACTAGGCTCTAGGTTAT 58.765 50.000 12.18 0.00 44.01 1.89
732 747 3.185246 ACGTTGGAGGCATATCAAGAG 57.815 47.619 0.00 0.00 0.00 2.85
733 748 2.158900 ACGTTGGAGGCATATCAAGAGG 60.159 50.000 0.00 0.00 0.00 3.69
734 749 2.225467 GTTGGAGGCATATCAAGAGGC 58.775 52.381 0.00 0.00 0.00 4.70
735 750 1.811778 TGGAGGCATATCAAGAGGCT 58.188 50.000 0.00 0.00 41.21 4.58
738 753 2.926778 AGGCATATCAAGAGGCTCAC 57.073 50.000 18.26 0.00 32.09 3.51
739 754 2.121948 AGGCATATCAAGAGGCTCACA 58.878 47.619 18.26 0.00 32.09 3.58
740 755 2.709934 AGGCATATCAAGAGGCTCACAT 59.290 45.455 18.26 7.62 32.09 3.21
741 756 2.812591 GGCATATCAAGAGGCTCACATG 59.187 50.000 18.26 12.45 0.00 3.21
742 757 3.474600 GCATATCAAGAGGCTCACATGT 58.525 45.455 18.26 0.00 0.00 3.21
743 758 3.250280 GCATATCAAGAGGCTCACATGTG 59.750 47.826 20.18 20.18 0.00 3.21
744 759 2.414994 ATCAAGAGGCTCACATGTGG 57.585 50.000 25.16 16.47 0.00 4.17
745 760 0.325933 TCAAGAGGCTCACATGTGGG 59.674 55.000 25.16 23.62 0.00 4.61
751 766 2.034066 CTCACATGTGGGCCCGTT 59.966 61.111 25.16 0.11 0.00 4.44
752 767 2.282110 TCACATGTGGGCCCGTTG 60.282 61.111 25.16 16.75 0.00 4.10
753 768 2.282110 CACATGTGGGCCCGTTGA 60.282 61.111 19.37 0.00 0.00 3.18
754 769 1.678635 CACATGTGGGCCCGTTGAT 60.679 57.895 19.37 2.73 0.00 2.57
755 770 1.076549 ACATGTGGGCCCGTTGATT 59.923 52.632 19.37 0.00 0.00 2.57
756 771 1.250154 ACATGTGGGCCCGTTGATTG 61.250 55.000 19.37 11.11 0.00 2.67
757 772 2.350458 ATGTGGGCCCGTTGATTGC 61.350 57.895 19.37 0.00 0.00 3.56
758 773 2.676471 GTGGGCCCGTTGATTGCT 60.676 61.111 19.37 0.00 0.00 3.91
759 774 2.676121 TGGGCCCGTTGATTGCTG 60.676 61.111 19.37 0.00 0.00 4.41
760 775 2.361104 GGGCCCGTTGATTGCTGA 60.361 61.111 5.69 0.00 0.00 4.26
761 776 2.409870 GGGCCCGTTGATTGCTGAG 61.410 63.158 5.69 0.00 0.00 3.35
762 777 1.675641 GGCCCGTTGATTGCTGAGT 60.676 57.895 0.00 0.00 0.00 3.41
763 778 1.648467 GGCCCGTTGATTGCTGAGTC 61.648 60.000 0.00 0.00 0.00 3.36
764 779 0.955428 GCCCGTTGATTGCTGAGTCA 60.955 55.000 0.00 0.00 0.00 3.41
765 780 1.081892 CCCGTTGATTGCTGAGTCAG 58.918 55.000 16.21 16.21 34.12 3.51
766 781 1.609061 CCCGTTGATTGCTGAGTCAGT 60.609 52.381 21.06 1.44 33.43 3.41
767 782 2.353704 CCCGTTGATTGCTGAGTCAGTA 60.354 50.000 21.06 14.55 33.43 2.74
768 783 3.325870 CCGTTGATTGCTGAGTCAGTAA 58.674 45.455 23.43 23.43 40.03 2.24
769 784 3.369147 CCGTTGATTGCTGAGTCAGTAAG 59.631 47.826 24.87 13.14 39.21 2.34
770 785 3.990469 CGTTGATTGCTGAGTCAGTAAGT 59.010 43.478 24.87 14.93 39.21 2.24
771 786 4.090642 CGTTGATTGCTGAGTCAGTAAGTC 59.909 45.833 24.87 20.85 39.21 3.01
772 787 4.871933 TGATTGCTGAGTCAGTAAGTCA 57.128 40.909 24.87 22.56 39.21 3.41
773 788 5.213891 TGATTGCTGAGTCAGTAAGTCAA 57.786 39.130 24.87 17.83 39.21 3.18
774 789 5.610398 TGATTGCTGAGTCAGTAAGTCAAA 58.390 37.500 24.87 5.30 39.21 2.69
775 790 5.698089 TGATTGCTGAGTCAGTAAGTCAAAG 59.302 40.000 24.87 0.00 39.21 2.77
776 791 3.995199 TGCTGAGTCAGTAAGTCAAAGG 58.005 45.455 21.06 0.00 36.88 3.11
777 792 3.388024 TGCTGAGTCAGTAAGTCAAAGGT 59.612 43.478 21.06 0.00 36.88 3.50
778 793 3.991121 GCTGAGTCAGTAAGTCAAAGGTC 59.009 47.826 21.06 0.00 36.88 3.85
779 794 4.501571 GCTGAGTCAGTAAGTCAAAGGTCA 60.502 45.833 21.06 0.00 36.88 4.02
780 795 5.788450 CTGAGTCAGTAAGTCAAAGGTCAT 58.212 41.667 12.28 0.00 36.88 3.06
781 796 6.572509 GCTGAGTCAGTAAGTCAAAGGTCATA 60.573 42.308 21.06 0.00 36.88 2.15
782 797 6.925211 TGAGTCAGTAAGTCAAAGGTCATAG 58.075 40.000 0.00 0.00 34.30 2.23
783 798 6.493802 TGAGTCAGTAAGTCAAAGGTCATAGT 59.506 38.462 0.00 0.00 34.30 2.12
784 799 7.015292 TGAGTCAGTAAGTCAAAGGTCATAGTT 59.985 37.037 0.00 0.00 34.30 2.24
785 800 7.155328 AGTCAGTAAGTCAAAGGTCATAGTTG 58.845 38.462 0.00 0.00 0.00 3.16
786 801 7.015292 AGTCAGTAAGTCAAAGGTCATAGTTGA 59.985 37.037 0.00 0.00 0.00 3.18
803 818 2.768253 TGACTAGTCAACATGGCTGG 57.232 50.000 23.24 0.00 36.59 4.85
804 819 1.977854 TGACTAGTCAACATGGCTGGT 59.022 47.619 23.24 0.35 46.58 4.00
805 820 2.289631 TGACTAGTCAACATGGCTGGTG 60.290 50.000 23.24 0.00 43.92 4.17
806 821 1.003580 ACTAGTCAACATGGCTGGTGG 59.996 52.381 0.00 0.00 42.29 4.61
807 822 0.327924 TAGTCAACATGGCTGGTGGG 59.672 55.000 0.00 0.00 40.69 4.61
808 823 1.978617 GTCAACATGGCTGGTGGGG 60.979 63.158 0.00 0.00 40.69 4.96
809 824 2.118076 CAACATGGCTGGTGGGGT 59.882 61.111 0.00 0.00 36.37 4.95
810 825 1.978617 CAACATGGCTGGTGGGGTC 60.979 63.158 0.00 0.00 36.37 4.46
811 826 2.162906 AACATGGCTGGTGGGGTCT 61.163 57.895 0.00 0.00 0.00 3.85
812 827 0.844661 AACATGGCTGGTGGGGTCTA 60.845 55.000 0.00 0.00 0.00 2.59
813 828 1.224592 CATGGCTGGTGGGGTCTAC 59.775 63.158 0.00 0.00 0.00 2.59
814 829 2.001269 ATGGCTGGTGGGGTCTACC 61.001 63.158 0.00 0.00 38.71 3.18
815 830 2.285442 GGCTGGTGGGGTCTACCT 60.285 66.667 0.00 0.00 39.01 3.08
816 831 2.670148 GGCTGGTGGGGTCTACCTG 61.670 68.421 0.00 3.02 39.01 4.00
817 832 1.918800 GCTGGTGGGGTCTACCTGT 60.919 63.158 0.00 0.00 38.82 4.00
818 833 1.900545 GCTGGTGGGGTCTACCTGTC 61.901 65.000 0.00 0.09 38.82 3.51
819 834 0.544357 CTGGTGGGGTCTACCTGTCA 60.544 60.000 0.00 0.00 39.01 3.58
820 835 0.118346 TGGTGGGGTCTACCTGTCAT 59.882 55.000 0.00 0.00 39.01 3.06
821 836 1.286248 GGTGGGGTCTACCTGTCATT 58.714 55.000 0.00 0.00 40.03 2.57
822 837 1.065418 GGTGGGGTCTACCTGTCATTG 60.065 57.143 0.00 0.00 40.03 2.82
823 838 1.906574 GTGGGGTCTACCTGTCATTGA 59.093 52.381 0.00 0.00 40.03 2.57
824 839 1.906574 TGGGGTCTACCTGTCATTGAC 59.093 52.381 9.93 9.93 40.03 3.18
825 840 2.188817 GGGGTCTACCTGTCATTGACT 58.811 52.381 17.26 0.63 40.03 3.41
826 841 2.168728 GGGGTCTACCTGTCATTGACTC 59.831 54.545 17.26 0.00 40.03 3.36
827 842 2.159226 GGGTCTACCTGTCATTGACTCG 60.159 54.545 17.26 9.65 35.85 4.18
828 843 2.492484 GGTCTACCTGTCATTGACTCGT 59.508 50.000 17.26 14.31 33.15 4.18
829 844 3.693085 GGTCTACCTGTCATTGACTCGTA 59.307 47.826 17.26 14.62 33.15 3.43
830 845 4.201930 GGTCTACCTGTCATTGACTCGTAG 60.202 50.000 23.72 23.72 36.81 3.51
831 846 2.656560 ACCTGTCATTGACTCGTAGC 57.343 50.000 17.26 0.00 33.15 3.58
832 847 2.171840 ACCTGTCATTGACTCGTAGCT 58.828 47.619 17.26 0.00 33.15 3.32
833 848 3.353557 ACCTGTCATTGACTCGTAGCTA 58.646 45.455 17.26 0.00 33.15 3.32
834 849 3.128938 ACCTGTCATTGACTCGTAGCTAC 59.871 47.826 14.19 14.19 33.15 3.58
835 850 3.378742 CCTGTCATTGACTCGTAGCTACT 59.621 47.826 21.20 2.91 33.15 2.57
836 851 4.575236 CCTGTCATTGACTCGTAGCTACTA 59.425 45.833 21.20 10.07 33.15 1.82
837 852 5.277586 CCTGTCATTGACTCGTAGCTACTAG 60.278 48.000 20.66 20.66 33.15 2.57
838 853 5.425630 TGTCATTGACTCGTAGCTACTAGA 58.574 41.667 27.07 15.01 33.15 2.43
839 854 6.056236 TGTCATTGACTCGTAGCTACTAGAT 58.944 40.000 27.07 14.06 33.15 1.98
840 855 6.542735 TGTCATTGACTCGTAGCTACTAGATT 59.457 38.462 27.07 11.00 33.15 2.40
841 856 7.067129 TGTCATTGACTCGTAGCTACTAGATTT 59.933 37.037 27.07 9.15 33.15 2.17
842 857 7.916450 GTCATTGACTCGTAGCTACTAGATTTT 59.084 37.037 27.07 8.82 0.00 1.82
843 858 9.117183 TCATTGACTCGTAGCTACTAGATTTTA 57.883 33.333 27.07 10.99 0.00 1.52
844 859 9.731819 CATTGACTCGTAGCTACTAGATTTTAA 57.268 33.333 27.07 15.41 0.00 1.52
869 884 7.475137 TTAAATCTGTTTAATTCACAGGGGG 57.525 36.000 14.71 0.00 41.83 5.40
870 885 2.802719 TCTGTTTAATTCACAGGGGGC 58.197 47.619 14.71 0.00 41.83 5.80
871 886 1.824852 CTGTTTAATTCACAGGGGGCC 59.175 52.381 0.00 0.00 38.43 5.80
872 887 1.191535 GTTTAATTCACAGGGGGCCC 58.808 55.000 15.76 15.76 0.00 5.80
873 888 0.787084 TTTAATTCACAGGGGGCCCA 59.213 50.000 26.86 1.73 38.92 5.36
874 889 0.040499 TTAATTCACAGGGGGCCCAC 59.960 55.000 26.86 23.59 38.92 4.61
875 890 1.143329 TAATTCACAGGGGGCCCACA 61.143 55.000 30.24 4.68 38.92 4.17
876 891 1.814292 AATTCACAGGGGGCCCACAT 61.814 55.000 30.24 11.81 38.92 3.21
877 892 2.519119 ATTCACAGGGGGCCCACATG 62.519 60.000 30.24 24.40 38.92 3.21
878 893 3.983420 CACAGGGGGCCCACATGT 61.983 66.667 30.24 24.44 38.92 3.21
879 894 3.661648 ACAGGGGGCCCACATGTC 61.662 66.667 30.24 5.72 38.92 3.06
880 895 3.660571 CAGGGGGCCCACATGTCA 61.661 66.667 30.24 0.00 38.92 3.58
881 896 2.618185 AGGGGGCCCACATGTCAT 60.618 61.111 30.24 0.00 38.92 3.06
882 897 1.308657 AGGGGGCCCACATGTCATA 60.309 57.895 30.24 0.00 38.92 2.15
883 898 1.152756 GGGGGCCCACATGTCATAC 60.153 63.158 26.86 0.59 35.81 2.39
884 899 1.645402 GGGGGCCCACATGTCATACT 61.645 60.000 26.86 0.00 35.81 2.12
885 900 0.179018 GGGGCCCACATGTCATACTC 60.179 60.000 26.86 0.00 0.00 2.59
886 901 0.839946 GGGCCCACATGTCATACTCT 59.160 55.000 19.95 0.00 0.00 3.24
887 902 2.047061 GGGCCCACATGTCATACTCTA 58.953 52.381 19.95 0.00 0.00 2.43
888 903 2.224305 GGGCCCACATGTCATACTCTAC 60.224 54.545 19.95 0.00 0.00 2.59
889 904 2.700897 GGCCCACATGTCATACTCTACT 59.299 50.000 0.00 0.00 0.00 2.57
890 905 3.895656 GGCCCACATGTCATACTCTACTA 59.104 47.826 0.00 0.00 0.00 1.82
891 906 4.528596 GGCCCACATGTCATACTCTACTAT 59.471 45.833 0.00 0.00 0.00 2.12
892 907 5.012148 GGCCCACATGTCATACTCTACTATT 59.988 44.000 0.00 0.00 0.00 1.73
893 908 6.210784 GGCCCACATGTCATACTCTACTATTA 59.789 42.308 0.00 0.00 0.00 0.98
894 909 7.316640 GCCCACATGTCATACTCTACTATTAG 58.683 42.308 0.00 0.00 0.00 1.73
895 910 7.039644 GCCCACATGTCATACTCTACTATTAGT 60.040 40.741 0.00 1.30 0.00 2.24
896 911 8.861086 CCCACATGTCATACTCTACTATTAGTT 58.139 37.037 0.85 0.00 0.00 2.24
931 946 9.757227 TTTTTAATTCACTAACTGGTCAATTGG 57.243 29.630 5.42 0.00 0.00 3.16
932 947 5.982890 AATTCACTAACTGGTCAATTGGG 57.017 39.130 5.42 0.00 0.00 4.12
933 948 3.433306 TCACTAACTGGTCAATTGGGG 57.567 47.619 5.42 0.00 0.00 4.96
934 949 2.714250 TCACTAACTGGTCAATTGGGGT 59.286 45.455 5.42 0.00 0.00 4.95
935 950 2.819608 CACTAACTGGTCAATTGGGGTG 59.180 50.000 5.42 0.00 0.00 4.61
936 951 2.225017 ACTAACTGGTCAATTGGGGTGG 60.225 50.000 5.42 0.00 0.00 4.61
937 952 0.560688 AACTGGTCAATTGGGGTGGT 59.439 50.000 5.42 0.00 0.00 4.16
938 953 0.178964 ACTGGTCAATTGGGGTGGTG 60.179 55.000 5.42 0.00 0.00 4.17
939 954 0.899717 CTGGTCAATTGGGGTGGTGG 60.900 60.000 5.42 0.00 0.00 4.61
940 955 1.609210 GGTCAATTGGGGTGGTGGG 60.609 63.158 5.42 0.00 0.00 4.61
941 956 1.155155 GTCAATTGGGGTGGTGGGT 59.845 57.895 5.42 0.00 0.00 4.51
942 957 0.898326 GTCAATTGGGGTGGTGGGTC 60.898 60.000 5.42 0.00 0.00 4.46
943 958 1.609210 CAATTGGGGTGGTGGGTCC 60.609 63.158 0.00 0.00 0.00 4.46
944 959 2.863970 AATTGGGGTGGTGGGTCCC 61.864 63.158 0.00 0.00 42.73 4.46
949 964 4.109675 GGTGGTGGGTCCCCGATG 62.110 72.222 5.13 0.00 39.42 3.84
950 965 3.327404 GTGGTGGGTCCCCGATGT 61.327 66.667 5.13 0.00 39.42 3.06
951 966 2.530661 TGGTGGGTCCCCGATGTT 60.531 61.111 5.13 0.00 39.42 2.71
952 967 1.229561 TGGTGGGTCCCCGATGTTA 60.230 57.895 5.13 0.00 39.42 2.41
953 968 1.268992 TGGTGGGTCCCCGATGTTAG 61.269 60.000 5.13 0.00 39.42 2.34
954 969 1.269703 GGTGGGTCCCCGATGTTAGT 61.270 60.000 5.13 0.00 39.42 2.24
955 970 0.107848 GTGGGTCCCCGATGTTAGTG 60.108 60.000 5.13 0.00 39.42 2.74
956 971 1.268992 TGGGTCCCCGATGTTAGTGG 61.269 60.000 5.13 0.00 39.42 4.00
957 972 1.525442 GGTCCCCGATGTTAGTGGG 59.475 63.158 0.00 0.00 42.92 4.61
958 973 1.269703 GGTCCCCGATGTTAGTGGGT 61.270 60.000 0.00 0.00 41.63 4.51
959 974 0.177373 GTCCCCGATGTTAGTGGGTC 59.823 60.000 0.00 0.00 41.63 4.46
960 975 0.252330 TCCCCGATGTTAGTGGGTCA 60.252 55.000 0.00 0.00 41.63 4.02
961 976 0.178068 CCCCGATGTTAGTGGGTCAG 59.822 60.000 0.00 0.00 41.63 3.51
962 977 1.191535 CCCGATGTTAGTGGGTCAGA 58.808 55.000 0.00 0.00 38.18 3.27
963 978 1.137086 CCCGATGTTAGTGGGTCAGAG 59.863 57.143 0.00 0.00 38.18 3.35
964 979 2.100197 CCGATGTTAGTGGGTCAGAGA 58.900 52.381 0.00 0.00 0.00 3.10
965 980 2.099921 CCGATGTTAGTGGGTCAGAGAG 59.900 54.545 0.00 0.00 0.00 3.20
966 981 2.099921 CGATGTTAGTGGGTCAGAGAGG 59.900 54.545 0.00 0.00 0.00 3.69
967 982 1.938585 TGTTAGTGGGTCAGAGAGGG 58.061 55.000 0.00 0.00 0.00 4.30
968 983 1.196012 GTTAGTGGGTCAGAGAGGGG 58.804 60.000 0.00 0.00 0.00 4.79
969 984 0.042731 TTAGTGGGTCAGAGAGGGGG 59.957 60.000 0.00 0.00 0.00 5.40
984 999 4.484872 GGGGGTGTTAGCGAGGCC 62.485 72.222 0.00 0.00 0.00 5.19
985 1000 4.832608 GGGGTGTTAGCGAGGCCG 62.833 72.222 0.00 0.00 39.16 6.13
986 1001 4.832608 GGGTGTTAGCGAGGCCGG 62.833 72.222 0.00 0.00 36.06 6.13
988 1003 2.813908 GTGTTAGCGAGGCCGGTG 60.814 66.667 1.90 0.00 46.81 4.94
989 1004 4.077184 TGTTAGCGAGGCCGGTGG 62.077 66.667 1.90 0.00 46.81 4.61
990 1005 4.078516 GTTAGCGAGGCCGGTGGT 62.079 66.667 1.90 0.00 46.81 4.16
991 1006 3.315949 TTAGCGAGGCCGGTGGTT 61.316 61.111 1.90 0.00 46.81 3.67
992 1007 1.983481 TTAGCGAGGCCGGTGGTTA 60.983 57.895 1.90 0.00 46.81 2.85
993 1008 1.543065 TTAGCGAGGCCGGTGGTTAA 61.543 55.000 1.90 0.00 46.81 2.01
994 1009 1.543065 TAGCGAGGCCGGTGGTTAAA 61.543 55.000 1.90 0.00 46.81 1.52
995 1010 2.683859 GCGAGGCCGGTGGTTAAAC 61.684 63.158 1.90 0.00 36.06 2.01
996 1011 1.301874 CGAGGCCGGTGGTTAAACA 60.302 57.895 1.90 0.00 0.00 2.83
997 1012 1.571215 CGAGGCCGGTGGTTAAACAC 61.571 60.000 15.56 15.56 40.60 3.32
1006 1021 3.259592 GGTTAAACACCGATGGCCT 57.740 52.632 3.32 0.00 35.12 5.19
1007 1022 1.092348 GGTTAAACACCGATGGCCTC 58.908 55.000 3.32 0.00 35.12 4.70
1008 1023 1.339727 GGTTAAACACCGATGGCCTCT 60.340 52.381 3.32 0.00 35.12 3.69
1009 1024 1.737793 GTTAAACACCGATGGCCTCTG 59.262 52.381 3.32 0.00 0.00 3.35
1010 1025 0.251916 TAAACACCGATGGCCTCTGG 59.748 55.000 3.32 5.10 0.00 3.86
1021 1036 4.135153 CCTCTGGCCACGACGGAG 62.135 72.222 0.00 6.66 43.33 4.63
1022 1037 4.135153 CTCTGGCCACGACGGAGG 62.135 72.222 0.00 1.57 40.21 4.30
1032 1047 4.803426 GACGGAGGCACGCTGGAG 62.803 72.222 1.44 0.00 39.40 3.86
1059 1074 2.404789 GCGCCCATCGACAACATG 59.595 61.111 0.00 0.00 41.67 3.21
1060 1075 3.101209 CGCCCATCGACAACATGG 58.899 61.111 0.00 0.00 41.67 3.66
1061 1076 2.800736 GCCCATCGACAACATGGC 59.199 61.111 0.00 0.00 39.78 4.40
1062 1077 2.045708 GCCCATCGACAACATGGCA 61.046 57.895 0.00 0.00 39.78 4.92
1063 1078 1.996786 GCCCATCGACAACATGGCAG 61.997 60.000 0.00 0.00 39.78 4.85
1064 1079 1.378882 CCCATCGACAACATGGCAGG 61.379 60.000 0.00 0.00 39.78 4.85
1065 1080 1.430632 CATCGACAACATGGCAGGC 59.569 57.895 0.00 0.00 0.00 4.85
1066 1081 1.028330 CATCGACAACATGGCAGGCT 61.028 55.000 0.00 0.00 0.00 4.58
1067 1082 1.028330 ATCGACAACATGGCAGGCTG 61.028 55.000 10.94 10.94 0.00 4.85
1068 1083 2.570181 GACAACATGGCAGGCTGC 59.430 61.111 30.93 30.93 44.08 5.25
1069 1084 3.332493 GACAACATGGCAGGCTGCG 62.332 63.158 31.22 20.72 46.21 5.18
1070 1085 4.124351 CAACATGGCAGGCTGCGG 62.124 66.667 31.22 24.38 46.21 5.69
1071 1086 4.349503 AACATGGCAGGCTGCGGA 62.350 61.111 31.22 21.32 46.21 5.54
1072 1087 4.790962 ACATGGCAGGCTGCGGAG 62.791 66.667 31.22 23.96 46.21 4.63
1105 1120 4.641645 CCAGGTTGTGGCCGAGCA 62.642 66.667 0.00 0.00 40.39 4.26
1106 1121 3.052082 CAGGTTGTGGCCGAGCAG 61.052 66.667 0.00 0.00 0.00 4.24
1107 1122 4.335647 AGGTTGTGGCCGAGCAGG 62.336 66.667 0.00 0.00 44.97 4.85
1177 1192 3.503363 GGCGCTTGGCTGTAGCAG 61.503 66.667 7.64 0.00 44.36 4.24
1187 1202 3.441244 CTGTAGCAGCGACAATGGA 57.559 52.632 9.82 0.00 0.00 3.41
1188 1203 1.002366 CTGTAGCAGCGACAATGGAC 58.998 55.000 9.82 0.00 0.00 4.02
1189 1204 0.735978 TGTAGCAGCGACAATGGACG 60.736 55.000 5.78 0.00 35.31 4.79
1190 1205 0.736325 GTAGCAGCGACAATGGACGT 60.736 55.000 0.00 0.00 34.68 4.34
1191 1206 0.735978 TAGCAGCGACAATGGACGTG 60.736 55.000 0.00 0.00 34.68 4.49
1192 1207 3.027170 GCAGCGACAATGGACGTGG 62.027 63.158 0.00 0.00 34.68 4.94
1193 1208 2.742372 AGCGACAATGGACGTGGC 60.742 61.111 0.00 0.00 38.26 5.01
1194 1209 3.047280 GCGACAATGGACGTGGCA 61.047 61.111 0.00 0.00 37.93 4.92
1195 1210 3.027170 GCGACAATGGACGTGGCAG 62.027 63.158 0.00 0.00 37.93 4.85
1196 1211 2.870372 GACAATGGACGTGGCAGC 59.130 61.111 0.00 0.00 0.00 5.25
1197 1212 1.965930 GACAATGGACGTGGCAGCA 60.966 57.895 0.00 0.00 0.00 4.41
1198 1213 1.915614 GACAATGGACGTGGCAGCAG 61.916 60.000 0.00 0.00 0.00 4.24
1199 1214 1.672030 CAATGGACGTGGCAGCAGA 60.672 57.895 0.00 0.00 0.00 4.26
1200 1215 1.028330 CAATGGACGTGGCAGCAGAT 61.028 55.000 0.00 0.00 0.00 2.90
1201 1216 0.322816 AATGGACGTGGCAGCAGATT 60.323 50.000 0.00 0.00 0.00 2.40
1202 1217 0.541392 ATGGACGTGGCAGCAGATTA 59.459 50.000 0.00 0.00 0.00 1.75
1203 1218 0.391130 TGGACGTGGCAGCAGATTAC 60.391 55.000 0.00 0.00 0.00 1.89
1204 1219 0.391130 GGACGTGGCAGCAGATTACA 60.391 55.000 0.00 0.00 0.00 2.41
1205 1220 1.002366 GACGTGGCAGCAGATTACAG 58.998 55.000 0.00 0.00 0.00 2.74
1206 1221 1.021390 ACGTGGCAGCAGATTACAGC 61.021 55.000 0.00 0.00 0.00 4.40
1207 1222 1.020861 CGTGGCAGCAGATTACAGCA 61.021 55.000 0.00 0.00 0.00 4.41
1208 1223 0.731417 GTGGCAGCAGATTACAGCAG 59.269 55.000 0.00 0.00 0.00 4.24
1209 1224 1.028330 TGGCAGCAGATTACAGCAGC 61.028 55.000 0.00 0.00 39.47 5.25
1210 1225 0.747283 GGCAGCAGATTACAGCAGCT 60.747 55.000 0.00 0.00 39.91 4.24
1211 1226 1.473965 GGCAGCAGATTACAGCAGCTA 60.474 52.381 0.00 0.00 39.91 3.32
1212 1227 1.865970 GCAGCAGATTACAGCAGCTAG 59.134 52.381 0.00 0.00 37.85 3.42
1213 1228 1.865970 CAGCAGATTACAGCAGCTAGC 59.134 52.381 6.62 6.62 46.19 3.42
1222 1237 2.202797 GCAGCTAGCGCAGTAGCA 60.203 61.111 25.13 0.00 46.81 3.49
1223 1238 2.236382 GCAGCTAGCGCAGTAGCAG 61.236 63.158 25.13 19.77 46.81 4.24
1224 1239 2.105930 AGCTAGCGCAGTAGCAGC 59.894 61.111 25.13 15.78 46.81 5.25
1225 1240 2.202797 GCTAGCGCAGTAGCAGCA 60.203 61.111 20.29 0.00 44.26 4.41
1226 1241 2.236382 GCTAGCGCAGTAGCAGCAG 61.236 63.158 20.29 0.89 44.26 4.24
1227 1242 2.202797 TAGCGCAGTAGCAGCAGC 60.203 61.111 11.47 0.00 42.27 5.25
1228 1243 2.895940 CTAGCGCAGTAGCAGCAGCA 62.896 60.000 11.47 0.00 45.49 4.41
1229 1244 2.895940 TAGCGCAGTAGCAGCAGCAG 62.896 60.000 11.47 0.00 45.49 4.24
1230 1245 2.125793 CGCAGTAGCAGCAGCAGA 60.126 61.111 3.17 0.00 45.49 4.26
1231 1246 2.165940 CGCAGTAGCAGCAGCAGAG 61.166 63.158 3.17 0.00 45.49 3.35
1232 1247 2.462782 GCAGTAGCAGCAGCAGAGC 61.463 63.158 3.17 0.00 45.49 4.09
1233 1248 1.079336 CAGTAGCAGCAGCAGAGCA 60.079 57.895 3.17 0.00 45.49 4.26
1234 1249 0.672711 CAGTAGCAGCAGCAGAGCAA 60.673 55.000 3.17 0.00 45.49 3.91
1235 1250 0.391395 AGTAGCAGCAGCAGAGCAAG 60.391 55.000 3.17 0.00 45.49 4.01
1236 1251 1.744368 TAGCAGCAGCAGAGCAAGC 60.744 57.895 3.17 0.00 45.49 4.01
1237 1252 2.459202 TAGCAGCAGCAGAGCAAGCA 62.459 55.000 3.17 1.42 45.49 3.91
1238 1253 2.916052 GCAGCAGCAGAGCAAGCAA 61.916 57.895 0.00 0.00 41.58 3.91
1239 1254 1.081376 CAGCAGCAGAGCAAGCAAC 60.081 57.895 0.00 0.00 35.04 4.17
1240 1255 2.126965 GCAGCAGAGCAAGCAACG 60.127 61.111 0.00 0.00 33.36 4.10
1241 1256 2.610694 GCAGCAGAGCAAGCAACGA 61.611 57.895 0.00 0.00 33.36 3.85
1242 1257 1.944035 CAGCAGAGCAAGCAACGAA 59.056 52.632 0.00 0.00 0.00 3.85
1243 1258 0.110328 CAGCAGAGCAAGCAACGAAG 60.110 55.000 0.00 0.00 0.00 3.79
1244 1259 1.441682 GCAGAGCAAGCAACGAAGC 60.442 57.895 0.00 0.00 0.00 3.86
1245 1260 1.944035 CAGAGCAAGCAACGAAGCA 59.056 52.632 6.62 0.00 36.85 3.91
1246 1261 0.110328 CAGAGCAAGCAACGAAGCAG 60.110 55.000 6.62 0.54 36.85 4.24
1247 1262 1.441682 GAGCAAGCAACGAAGCAGC 60.442 57.895 6.62 9.15 37.85 5.25
1248 1263 2.798262 GCAAGCAACGAAGCAGCG 60.798 61.111 6.62 0.00 35.72 5.18
1249 1264 2.938253 CAAGCAACGAAGCAGCGA 59.062 55.556 5.21 0.00 35.72 4.93
1250 1265 1.279539 CAAGCAACGAAGCAGCGAA 59.720 52.632 5.21 0.00 35.72 4.70
1251 1266 0.723790 CAAGCAACGAAGCAGCGAAG 60.724 55.000 5.21 0.00 35.72 3.79
1268 1283 2.434884 GCAGCAGCGGCAGTAGAA 60.435 61.111 13.20 0.00 44.61 2.10
1269 1284 2.459442 GCAGCAGCGGCAGTAGAAG 61.459 63.158 13.20 0.00 44.61 2.85
1270 1285 2.125350 AGCAGCGGCAGTAGAAGC 60.125 61.111 12.44 0.00 44.61 3.86
1271 1286 2.434884 GCAGCGGCAGTAGAAGCA 60.435 61.111 3.18 0.00 40.72 3.91
1272 1287 2.459442 GCAGCGGCAGTAGAAGCAG 61.459 63.158 3.18 0.00 40.72 4.24
1273 1288 1.079543 CAGCGGCAGTAGAAGCAGT 60.080 57.895 1.45 0.00 0.00 4.40
1274 1289 0.173481 CAGCGGCAGTAGAAGCAGTA 59.827 55.000 1.45 0.00 0.00 2.74
1275 1290 0.457851 AGCGGCAGTAGAAGCAGTAG 59.542 55.000 1.45 0.00 0.00 2.57
1276 1291 0.528684 GCGGCAGTAGAAGCAGTAGG 60.529 60.000 0.00 0.00 0.00 3.18
1277 1292 0.528684 CGGCAGTAGAAGCAGTAGGC 60.529 60.000 0.00 0.00 45.30 3.93
1287 1302 1.153349 GCAGTAGGCAGTAGTGGGC 60.153 63.158 0.00 0.00 43.97 5.36
1288 1303 1.141881 CAGTAGGCAGTAGTGGGCG 59.858 63.158 0.00 0.00 35.71 6.13
1289 1304 2.058595 AGTAGGCAGTAGTGGGCGG 61.059 63.158 0.00 0.00 35.71 6.13
1290 1305 3.467226 TAGGCAGTAGTGGGCGGC 61.467 66.667 0.00 0.00 35.71 6.53
1293 1308 4.697756 GCAGTAGTGGGCGGCACA 62.698 66.667 12.47 0.00 0.00 4.57
1294 1309 2.268920 CAGTAGTGGGCGGCACAT 59.731 61.111 8.76 0.00 0.00 3.21
1295 1310 2.108514 CAGTAGTGGGCGGCACATG 61.109 63.158 8.76 0.00 0.00 3.21
1296 1311 2.267642 GTAGTGGGCGGCACATGA 59.732 61.111 8.76 0.00 0.00 3.07
1533 1549 6.439375 TGGTAAAGGCTTAGTGAAGATGTCTA 59.561 38.462 0.00 0.00 34.25 2.59
1670 1686 4.486125 TGCAGAAAGATATGTAGCACCA 57.514 40.909 0.00 0.00 0.00 4.17
1781 1797 0.902531 TAGCCACAGCCTTGTACTCC 59.097 55.000 0.00 0.00 41.25 3.85
1834 1850 4.803426 CCGAGCACTCCAGGCGAC 62.803 72.222 0.00 0.00 36.08 5.19
2056 2072 4.230745 ACTGACAAACCCTGTTAACAGT 57.769 40.909 29.05 14.09 42.27 3.55
2111 2127 2.624838 CTGAAGTCCACCAACAATGCTT 59.375 45.455 0.00 0.00 0.00 3.91
2121 2137 4.153117 CACCAACAATGCTTCTGTACTCTC 59.847 45.833 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.622004 GAATTGTGGATTTATGATCAGCTTATG 57.378 33.333 0.09 0.00 0.00 1.90
60 61 2.989422 AATACTCTTTTGCGGTGTGC 57.011 45.000 0.00 0.00 46.70 4.57
220 225 1.480954 GATCACGGAGGGCTTCTACAA 59.519 52.381 0.00 0.00 0.00 2.41
249 255 1.507140 TTTCGGGCATCCTACCAGAT 58.493 50.000 0.00 0.00 31.22 2.90
264 270 0.527565 CCCATCTTGGTGCCTTTTCG 59.472 55.000 0.00 0.00 35.17 3.46
273 279 1.779092 CCCATGAGATCCCATCTTGGT 59.221 52.381 11.93 0.00 40.38 3.67
484 493 1.203364 AGACACCCAGGAGACTTGGAT 60.203 52.381 1.52 0.00 46.19 3.41
584 593 1.002544 AGCCTAGTGCCAGTTTCTGTC 59.997 52.381 0.21 0.00 42.71 3.51
600 615 6.076653 GGACTAACCTAATAACCTAGAGCCT 58.923 44.000 0.00 0.00 35.41 4.58
613 628 9.589461 TTTACATGATTTTTGGGACTAACCTAA 57.411 29.630 0.00 0.00 37.35 2.69
721 736 3.250280 CACATGTGAGCCTCTTGATATGC 59.750 47.826 21.64 0.00 0.00 3.14
733 748 4.722700 ACGGGCCCACATGTGAGC 62.723 66.667 27.46 25.13 0.00 4.26
734 749 2.034066 AACGGGCCCACATGTGAG 59.966 61.111 27.46 15.83 0.00 3.51
735 750 2.135903 ATCAACGGGCCCACATGTGA 62.136 55.000 27.46 16.72 0.00 3.58
736 751 1.250154 AATCAACGGGCCCACATGTG 61.250 55.000 24.92 19.31 0.00 3.21
737 752 1.076549 AATCAACGGGCCCACATGT 59.923 52.632 24.92 8.68 0.00 3.21
738 753 1.512230 CAATCAACGGGCCCACATG 59.488 57.895 24.92 17.17 0.00 3.21
739 754 2.350458 GCAATCAACGGGCCCACAT 61.350 57.895 24.92 2.81 0.00 3.21
740 755 2.988684 GCAATCAACGGGCCCACA 60.989 61.111 24.92 1.23 0.00 4.17
741 756 2.676471 AGCAATCAACGGGCCCAC 60.676 61.111 24.92 0.00 0.00 4.61
742 757 2.676121 CAGCAATCAACGGGCCCA 60.676 61.111 24.92 1.02 0.00 5.36
743 758 2.361104 TCAGCAATCAACGGGCCC 60.361 61.111 13.57 13.57 0.00 5.80
744 759 1.648467 GACTCAGCAATCAACGGGCC 61.648 60.000 0.00 0.00 0.00 5.80
745 760 0.955428 TGACTCAGCAATCAACGGGC 60.955 55.000 0.00 0.00 0.00 6.13
746 761 1.081892 CTGACTCAGCAATCAACGGG 58.918 55.000 0.00 0.00 0.00 5.28
747 762 1.800805 ACTGACTCAGCAATCAACGG 58.199 50.000 5.92 0.00 34.37 4.44
748 763 3.990469 ACTTACTGACTCAGCAATCAACG 59.010 43.478 5.92 0.00 34.37 4.10
749 764 4.991056 TGACTTACTGACTCAGCAATCAAC 59.009 41.667 5.92 0.00 34.37 3.18
750 765 5.213891 TGACTTACTGACTCAGCAATCAA 57.786 39.130 5.92 0.00 34.37 2.57
751 766 4.871933 TGACTTACTGACTCAGCAATCA 57.128 40.909 5.92 2.92 34.37 2.57
752 767 5.121454 CCTTTGACTTACTGACTCAGCAATC 59.879 44.000 5.92 0.45 34.37 2.67
753 768 4.999950 CCTTTGACTTACTGACTCAGCAAT 59.000 41.667 5.92 0.00 34.37 3.56
754 769 4.141711 ACCTTTGACTTACTGACTCAGCAA 60.142 41.667 5.92 0.00 34.37 3.91
755 770 3.388024 ACCTTTGACTTACTGACTCAGCA 59.612 43.478 5.92 0.00 34.37 4.41
756 771 3.991121 GACCTTTGACTTACTGACTCAGC 59.009 47.826 5.92 0.00 34.37 4.26
757 772 5.201713 TGACCTTTGACTTACTGACTCAG 57.798 43.478 4.36 4.36 37.52 3.35
758 773 5.808366 ATGACCTTTGACTTACTGACTCA 57.192 39.130 0.00 0.00 0.00 3.41
759 774 6.926313 ACTATGACCTTTGACTTACTGACTC 58.074 40.000 0.00 0.00 0.00 3.36
760 775 6.919775 ACTATGACCTTTGACTTACTGACT 57.080 37.500 0.00 0.00 0.00 3.41
761 776 7.152645 TCAACTATGACCTTTGACTTACTGAC 58.847 38.462 0.00 0.00 0.00 3.51
762 777 7.297936 TCAACTATGACCTTTGACTTACTGA 57.702 36.000 0.00 0.00 0.00 3.41
783 798 2.371841 ACCAGCCATGTTGACTAGTCAA 59.628 45.455 30.07 30.07 46.27 3.18
784 799 1.977854 ACCAGCCATGTTGACTAGTCA 59.022 47.619 21.74 21.74 37.91 3.41
785 800 2.350522 CACCAGCCATGTTGACTAGTC 58.649 52.381 16.32 16.32 0.00 2.59
786 801 1.003580 CCACCAGCCATGTTGACTAGT 59.996 52.381 0.00 0.00 0.00 2.57
787 802 1.679944 CCCACCAGCCATGTTGACTAG 60.680 57.143 0.00 0.00 0.00 2.57
788 803 0.327924 CCCACCAGCCATGTTGACTA 59.672 55.000 0.00 0.00 0.00 2.59
789 804 1.075482 CCCACCAGCCATGTTGACT 59.925 57.895 0.00 0.00 0.00 3.41
790 805 1.978617 CCCCACCAGCCATGTTGAC 60.979 63.158 0.00 0.00 0.00 3.18
791 806 2.424842 GACCCCACCAGCCATGTTGA 62.425 60.000 0.00 0.00 0.00 3.18
792 807 1.978617 GACCCCACCAGCCATGTTG 60.979 63.158 0.00 0.00 0.00 3.33
793 808 0.844661 TAGACCCCACCAGCCATGTT 60.845 55.000 0.00 0.00 0.00 2.71
794 809 1.229820 TAGACCCCACCAGCCATGT 60.230 57.895 0.00 0.00 0.00 3.21
795 810 1.224592 GTAGACCCCACCAGCCATG 59.775 63.158 0.00 0.00 0.00 3.66
796 811 2.001269 GGTAGACCCCACCAGCCAT 61.001 63.158 0.00 0.00 36.01 4.40
797 812 2.609610 GGTAGACCCCACCAGCCA 60.610 66.667 0.00 0.00 36.01 4.75
798 813 2.285442 AGGTAGACCCCACCAGCC 60.285 66.667 0.00 0.00 38.62 4.85
799 814 1.900545 GACAGGTAGACCCCACCAGC 61.901 65.000 0.00 0.00 38.62 4.85
800 815 0.544357 TGACAGGTAGACCCCACCAG 60.544 60.000 0.00 0.00 38.62 4.00
801 816 0.118346 ATGACAGGTAGACCCCACCA 59.882 55.000 0.00 0.00 38.62 4.17
802 817 1.065418 CAATGACAGGTAGACCCCACC 60.065 57.143 0.00 0.00 36.42 4.61
803 818 1.906574 TCAATGACAGGTAGACCCCAC 59.093 52.381 0.00 0.00 36.42 4.61
804 819 1.906574 GTCAATGACAGGTAGACCCCA 59.093 52.381 8.74 0.00 36.42 4.96
805 820 2.168728 GAGTCAATGACAGGTAGACCCC 59.831 54.545 16.38 0.00 34.60 4.95
806 821 2.159226 CGAGTCAATGACAGGTAGACCC 60.159 54.545 16.38 0.00 34.60 4.46
807 822 2.492484 ACGAGTCAATGACAGGTAGACC 59.508 50.000 16.38 0.00 34.60 3.85
808 823 3.851976 ACGAGTCAATGACAGGTAGAC 57.148 47.619 16.38 0.00 34.60 2.59
809 824 3.377485 GCTACGAGTCAATGACAGGTAGA 59.623 47.826 30.36 11.28 40.06 2.59
810 825 3.378742 AGCTACGAGTCAATGACAGGTAG 59.621 47.826 25.83 25.83 40.33 3.18
811 826 3.353557 AGCTACGAGTCAATGACAGGTA 58.646 45.455 16.38 14.53 34.60 3.08
812 827 2.171840 AGCTACGAGTCAATGACAGGT 58.828 47.619 16.38 14.18 34.60 4.00
813 828 2.949451 AGCTACGAGTCAATGACAGG 57.051 50.000 16.38 8.98 34.60 4.00
814 829 4.624336 AGTAGCTACGAGTCAATGACAG 57.376 45.455 17.99 11.28 34.60 3.51
815 830 5.425630 TCTAGTAGCTACGAGTCAATGACA 58.574 41.667 26.86 8.36 34.60 3.58
816 831 5.987777 TCTAGTAGCTACGAGTCAATGAC 57.012 43.478 26.86 5.02 31.89 3.06
817 832 7.569639 AAATCTAGTAGCTACGAGTCAATGA 57.430 36.000 26.86 12.30 31.89 2.57
818 833 9.731819 TTAAAATCTAGTAGCTACGAGTCAATG 57.268 33.333 26.86 7.84 31.89 2.82
845 860 6.071051 GCCCCCTGTGAATTAAACAGATTTAA 60.071 38.462 18.11 0.00 46.55 1.52
846 861 5.420739 GCCCCCTGTGAATTAAACAGATTTA 59.579 40.000 18.11 0.00 46.55 1.40
847 862 4.222810 GCCCCCTGTGAATTAAACAGATTT 59.777 41.667 18.11 0.00 46.55 2.17
848 863 3.769300 GCCCCCTGTGAATTAAACAGATT 59.231 43.478 18.11 0.00 46.55 2.40
849 864 3.365472 GCCCCCTGTGAATTAAACAGAT 58.635 45.455 18.11 0.00 46.55 2.90
850 865 2.556559 GGCCCCCTGTGAATTAAACAGA 60.557 50.000 18.11 0.00 46.55 3.41
851 866 1.824852 GGCCCCCTGTGAATTAAACAG 59.175 52.381 11.98 11.98 43.84 3.16
852 867 1.551329 GGGCCCCCTGTGAATTAAACA 60.551 52.381 12.23 0.00 0.00 2.83
853 868 1.191535 GGGCCCCCTGTGAATTAAAC 58.808 55.000 12.23 0.00 0.00 2.01
854 869 0.787084 TGGGCCCCCTGTGAATTAAA 59.213 50.000 22.27 0.00 36.94 1.52
855 870 0.040499 GTGGGCCCCCTGTGAATTAA 59.960 55.000 22.27 0.00 36.94 1.40
856 871 1.143329 TGTGGGCCCCCTGTGAATTA 61.143 55.000 22.27 0.00 36.94 1.40
857 872 1.814292 ATGTGGGCCCCCTGTGAATT 61.814 55.000 22.27 0.00 36.94 2.17
858 873 2.248374 ATGTGGGCCCCCTGTGAAT 61.248 57.895 22.27 0.00 36.94 2.57
859 874 2.863484 ATGTGGGCCCCCTGTGAA 60.863 61.111 22.27 0.00 36.94 3.18
860 875 3.660571 CATGTGGGCCCCCTGTGA 61.661 66.667 22.27 0.00 36.94 3.58
861 876 3.944250 GACATGTGGGCCCCCTGTG 62.944 68.421 22.27 15.34 36.94 3.66
862 877 3.661648 GACATGTGGGCCCCCTGT 61.662 66.667 22.27 19.76 36.94 4.00
863 878 1.644437 TATGACATGTGGGCCCCCTG 61.644 60.000 22.27 16.40 36.94 4.45
864 879 1.308657 TATGACATGTGGGCCCCCT 60.309 57.895 22.27 0.00 36.94 4.79
865 880 1.152756 GTATGACATGTGGGCCCCC 60.153 63.158 22.27 8.90 0.00 5.40
866 881 0.179018 GAGTATGACATGTGGGCCCC 60.179 60.000 22.27 11.72 0.00 5.80
867 882 0.839946 AGAGTATGACATGTGGGCCC 59.160 55.000 17.59 17.59 0.00 5.80
868 883 2.700897 AGTAGAGTATGACATGTGGGCC 59.299 50.000 1.15 0.00 0.00 5.80
869 884 5.730296 ATAGTAGAGTATGACATGTGGGC 57.270 43.478 1.15 0.00 0.00 5.36
870 885 8.410673 ACTAATAGTAGAGTATGACATGTGGG 57.589 38.462 1.15 0.00 0.00 4.61
905 920 9.757227 CCAATTGACCAGTTAGTGAATTAAAAA 57.243 29.630 7.12 0.00 32.72 1.94
906 921 8.364142 CCCAATTGACCAGTTAGTGAATTAAAA 58.636 33.333 7.12 0.00 32.72 1.52
907 922 7.039363 CCCCAATTGACCAGTTAGTGAATTAAA 60.039 37.037 7.12 0.00 32.72 1.52
908 923 6.435904 CCCCAATTGACCAGTTAGTGAATTAA 59.564 38.462 7.12 0.00 32.72 1.40
909 924 5.949354 CCCCAATTGACCAGTTAGTGAATTA 59.051 40.000 7.12 0.00 32.72 1.40
910 925 4.772100 CCCCAATTGACCAGTTAGTGAATT 59.228 41.667 7.12 0.00 34.45 2.17
911 926 4.202673 ACCCCAATTGACCAGTTAGTGAAT 60.203 41.667 7.12 0.00 0.00 2.57
912 927 3.139397 ACCCCAATTGACCAGTTAGTGAA 59.861 43.478 7.12 0.00 0.00 3.18
913 928 2.714250 ACCCCAATTGACCAGTTAGTGA 59.286 45.455 7.12 0.00 0.00 3.41
914 929 2.819608 CACCCCAATTGACCAGTTAGTG 59.180 50.000 7.12 0.00 0.00 2.74
915 930 2.225017 CCACCCCAATTGACCAGTTAGT 60.225 50.000 7.12 0.00 0.00 2.24
916 931 2.225017 ACCACCCCAATTGACCAGTTAG 60.225 50.000 7.12 0.00 0.00 2.34
917 932 1.783979 ACCACCCCAATTGACCAGTTA 59.216 47.619 7.12 0.00 0.00 2.24
918 933 0.560688 ACCACCCCAATTGACCAGTT 59.439 50.000 7.12 0.00 0.00 3.16
919 934 0.178964 CACCACCCCAATTGACCAGT 60.179 55.000 7.12 0.00 0.00 4.00
920 935 0.899717 CCACCACCCCAATTGACCAG 60.900 60.000 7.12 0.00 0.00 4.00
921 936 1.154921 CCACCACCCCAATTGACCA 59.845 57.895 7.12 0.00 0.00 4.02
922 937 1.609210 CCCACCACCCCAATTGACC 60.609 63.158 7.12 0.00 0.00 4.02
923 938 0.898326 GACCCACCACCCCAATTGAC 60.898 60.000 7.12 0.00 0.00 3.18
924 939 1.462928 GACCCACCACCCCAATTGA 59.537 57.895 7.12 0.00 0.00 2.57
925 940 1.609210 GGACCCACCACCCCAATTG 60.609 63.158 0.00 0.00 38.79 2.32
926 941 2.858655 GGACCCACCACCCCAATT 59.141 61.111 0.00 0.00 38.79 2.32
927 942 3.272847 GGGACCCACCACCCCAAT 61.273 66.667 5.33 0.00 40.19 3.16
940 955 0.177373 GACCCACTAACATCGGGGAC 59.823 60.000 1.96 0.00 44.96 4.46
941 956 0.252330 TGACCCACTAACATCGGGGA 60.252 55.000 1.96 0.00 44.96 4.81
942 957 0.178068 CTGACCCACTAACATCGGGG 59.822 60.000 0.00 0.00 44.96 5.73
943 958 1.137086 CTCTGACCCACTAACATCGGG 59.863 57.143 0.00 0.00 46.22 5.14
944 959 2.099921 CTCTCTGACCCACTAACATCGG 59.900 54.545 0.00 0.00 0.00 4.18
945 960 2.099921 CCTCTCTGACCCACTAACATCG 59.900 54.545 0.00 0.00 0.00 3.84
946 961 2.432510 CCCTCTCTGACCCACTAACATC 59.567 54.545 0.00 0.00 0.00 3.06
947 962 2.472029 CCCTCTCTGACCCACTAACAT 58.528 52.381 0.00 0.00 0.00 2.71
948 963 1.552486 CCCCTCTCTGACCCACTAACA 60.552 57.143 0.00 0.00 0.00 2.41
949 964 1.196012 CCCCTCTCTGACCCACTAAC 58.804 60.000 0.00 0.00 0.00 2.34
950 965 0.042731 CCCCCTCTCTGACCCACTAA 59.957 60.000 0.00 0.00 0.00 2.24
951 966 1.704082 CCCCCTCTCTGACCCACTA 59.296 63.158 0.00 0.00 0.00 2.74
952 967 2.452114 CCCCCTCTCTGACCCACT 59.548 66.667 0.00 0.00 0.00 4.00
967 982 4.484872 GGCCTCGCTAACACCCCC 62.485 72.222 0.00 0.00 0.00 5.40
968 983 4.832608 CGGCCTCGCTAACACCCC 62.833 72.222 0.00 0.00 0.00 4.95
969 984 4.832608 CCGGCCTCGCTAACACCC 62.833 72.222 0.00 0.00 34.56 4.61
970 985 4.078516 ACCGGCCTCGCTAACACC 62.079 66.667 0.00 0.00 34.56 4.16
971 986 2.813908 CACCGGCCTCGCTAACAC 60.814 66.667 0.00 0.00 34.56 3.32
972 987 4.077184 CCACCGGCCTCGCTAACA 62.077 66.667 0.00 0.00 34.56 2.41
973 988 2.229690 TAACCACCGGCCTCGCTAAC 62.230 60.000 0.00 0.00 34.56 2.34
974 989 1.543065 TTAACCACCGGCCTCGCTAA 61.543 55.000 0.00 0.00 34.56 3.09
975 990 1.543065 TTTAACCACCGGCCTCGCTA 61.543 55.000 0.00 0.00 34.56 4.26
976 991 2.886134 TTTAACCACCGGCCTCGCT 61.886 57.895 0.00 0.00 34.56 4.93
977 992 2.358984 TTTAACCACCGGCCTCGC 60.359 61.111 0.00 0.00 34.56 5.03
978 993 1.301874 TGTTTAACCACCGGCCTCG 60.302 57.895 0.00 0.00 0.00 4.63
979 994 2.250646 GTGTTTAACCACCGGCCTC 58.749 57.895 0.00 0.00 0.00 4.70
980 995 4.486887 GTGTTTAACCACCGGCCT 57.513 55.556 0.00 0.00 0.00 5.19
988 1003 1.092348 GAGGCCATCGGTGTTTAACC 58.908 55.000 5.01 0.00 46.60 2.85
989 1004 1.737793 CAGAGGCCATCGGTGTTTAAC 59.262 52.381 5.01 0.00 0.00 2.01
990 1005 1.339631 CCAGAGGCCATCGGTGTTTAA 60.340 52.381 5.01 0.00 0.00 1.52
991 1006 0.251916 CCAGAGGCCATCGGTGTTTA 59.748 55.000 5.01 0.00 0.00 2.01
992 1007 1.002134 CCAGAGGCCATCGGTGTTT 60.002 57.895 5.01 0.00 0.00 2.83
993 1008 2.671070 CCAGAGGCCATCGGTGTT 59.329 61.111 5.01 0.00 0.00 3.32
994 1009 4.101448 GCCAGAGGCCATCGGTGT 62.101 66.667 5.01 0.00 44.06 4.16
1004 1019 4.135153 CTCCGTCGTGGCCAGAGG 62.135 72.222 5.11 11.60 37.80 3.69
1005 1020 4.135153 CCTCCGTCGTGGCCAGAG 62.135 72.222 5.11 9.08 37.80 3.35
1015 1030 4.803426 CTCCAGCGTGCCTCCGTC 62.803 72.222 0.00 0.00 0.00 4.79
1041 1056 2.824041 ATGTTGTCGATGGGCGCC 60.824 61.111 21.18 21.18 40.61 6.53
1042 1057 2.404789 CATGTTGTCGATGGGCGC 59.595 61.111 0.00 0.00 40.61 6.53
1043 1058 3.101209 CCATGTTGTCGATGGGCG 58.899 61.111 0.00 0.00 37.33 6.13
1044 1059 1.996786 CTGCCATGTTGTCGATGGGC 61.997 60.000 4.26 4.89 40.80 5.36
1045 1060 1.378882 CCTGCCATGTTGTCGATGGG 61.379 60.000 4.26 0.00 40.80 4.00
1046 1061 1.996786 GCCTGCCATGTTGTCGATGG 61.997 60.000 0.00 0.00 43.01 3.51
1047 1062 1.028330 AGCCTGCCATGTTGTCGATG 61.028 55.000 0.00 0.00 0.00 3.84
1048 1063 1.028330 CAGCCTGCCATGTTGTCGAT 61.028 55.000 0.00 0.00 0.00 3.59
1049 1064 1.672030 CAGCCTGCCATGTTGTCGA 60.672 57.895 0.00 0.00 0.00 4.20
1050 1065 2.872557 CAGCCTGCCATGTTGTCG 59.127 61.111 0.00 0.00 0.00 4.35
1051 1066 2.570181 GCAGCCTGCCATGTTGTC 59.430 61.111 5.06 0.00 37.42 3.18
1052 1067 3.367743 CGCAGCCTGCCATGTTGT 61.368 61.111 11.83 0.00 41.12 3.32
1053 1068 4.124351 CCGCAGCCTGCCATGTTG 62.124 66.667 11.83 0.00 41.12 3.33
1054 1069 4.349503 TCCGCAGCCTGCCATGTT 62.350 61.111 11.83 0.00 41.12 2.71
1055 1070 4.790962 CTCCGCAGCCTGCCATGT 62.791 66.667 11.83 0.00 41.12 3.21
1088 1103 4.641645 TGCTCGGCCACAACCTGG 62.642 66.667 2.24 0.00 44.08 4.45
1089 1104 3.052082 CTGCTCGGCCACAACCTG 61.052 66.667 2.24 0.00 0.00 4.00
1090 1105 4.335647 CCTGCTCGGCCACAACCT 62.336 66.667 2.24 0.00 0.00 3.50
1160 1175 3.503363 CTGCTACAGCCAAGCGCC 61.503 66.667 2.29 0.00 43.11 6.53
1169 1184 1.002366 GTCCATTGTCGCTGCTACAG 58.998 55.000 7.09 0.00 34.12 2.74
1170 1185 0.735978 CGTCCATTGTCGCTGCTACA 60.736 55.000 2.55 2.55 0.00 2.74
1171 1186 0.736325 ACGTCCATTGTCGCTGCTAC 60.736 55.000 0.00 0.00 0.00 3.58
1172 1187 0.735978 CACGTCCATTGTCGCTGCTA 60.736 55.000 0.00 0.00 0.00 3.49
1173 1188 2.029288 CACGTCCATTGTCGCTGCT 61.029 57.895 0.00 0.00 0.00 4.24
1174 1189 2.476051 CACGTCCATTGTCGCTGC 59.524 61.111 0.00 0.00 0.00 5.25
1175 1190 3.027170 GCCACGTCCATTGTCGCTG 62.027 63.158 0.00 0.00 0.00 5.18
1176 1191 2.742372 GCCACGTCCATTGTCGCT 60.742 61.111 0.00 0.00 0.00 4.93
1177 1192 3.027170 CTGCCACGTCCATTGTCGC 62.027 63.158 0.00 0.00 0.00 5.19
1178 1193 3.027170 GCTGCCACGTCCATTGTCG 62.027 63.158 0.00 0.00 0.00 4.35
1179 1194 1.915614 CTGCTGCCACGTCCATTGTC 61.916 60.000 0.00 0.00 0.00 3.18
1180 1195 1.968017 CTGCTGCCACGTCCATTGT 60.968 57.895 0.00 0.00 0.00 2.71
1181 1196 1.028330 ATCTGCTGCCACGTCCATTG 61.028 55.000 0.00 0.00 0.00 2.82
1182 1197 0.322816 AATCTGCTGCCACGTCCATT 60.323 50.000 0.00 0.00 0.00 3.16
1183 1198 0.541392 TAATCTGCTGCCACGTCCAT 59.459 50.000 0.00 0.00 0.00 3.41
1184 1199 0.391130 GTAATCTGCTGCCACGTCCA 60.391 55.000 0.00 0.00 0.00 4.02
1185 1200 0.391130 TGTAATCTGCTGCCACGTCC 60.391 55.000 0.00 0.00 0.00 4.79
1186 1201 1.002366 CTGTAATCTGCTGCCACGTC 58.998 55.000 0.00 0.00 0.00 4.34
1187 1202 1.021390 GCTGTAATCTGCTGCCACGT 61.021 55.000 0.00 0.00 35.98 4.49
1188 1203 1.020861 TGCTGTAATCTGCTGCCACG 61.021 55.000 0.00 0.00 38.91 4.94
1189 1204 0.731417 CTGCTGTAATCTGCTGCCAC 59.269 55.000 0.00 0.00 38.91 5.01
1190 1205 3.164026 CTGCTGTAATCTGCTGCCA 57.836 52.632 0.00 0.00 38.91 4.92
1193 1208 1.865970 GCTAGCTGCTGTAATCTGCTG 59.134 52.381 13.43 0.00 38.79 4.41
1194 1209 1.537776 CGCTAGCTGCTGTAATCTGCT 60.538 52.381 13.43 0.00 40.85 4.24
1195 1210 0.857935 CGCTAGCTGCTGTAATCTGC 59.142 55.000 13.43 4.39 40.11 4.26
1196 1211 0.857935 GCGCTAGCTGCTGTAATCTG 59.142 55.000 19.70 0.00 41.01 2.90
1197 1212 0.461548 TGCGCTAGCTGCTGTAATCT 59.538 50.000 24.66 0.00 45.42 2.40
1198 1213 0.857935 CTGCGCTAGCTGCTGTAATC 59.142 55.000 24.66 0.00 45.42 1.75
1199 1214 0.176680 ACTGCGCTAGCTGCTGTAAT 59.823 50.000 28.35 14.09 44.79 1.89
1200 1215 0.815095 TACTGCGCTAGCTGCTGTAA 59.185 50.000 29.68 20.51 44.79 2.41
1201 1216 0.382158 CTACTGCGCTAGCTGCTGTA 59.618 55.000 29.66 29.66 44.79 2.74
1202 1217 1.140589 CTACTGCGCTAGCTGCTGT 59.859 57.895 30.28 30.28 44.79 4.40
1203 1218 2.236382 GCTACTGCGCTAGCTGCTG 61.236 63.158 25.05 25.05 44.79 4.41
1204 1219 2.105930 GCTACTGCGCTAGCTGCT 59.894 61.111 24.66 7.57 44.79 4.24
1205 1220 2.202797 TGCTACTGCGCTAGCTGC 60.203 61.111 23.97 20.03 44.79 5.25
1206 1221 2.236382 GCTGCTACTGCGCTAGCTG 61.236 63.158 23.97 23.41 45.42 4.24
1207 1222 2.105930 GCTGCTACTGCGCTAGCT 59.894 61.111 23.97 0.00 45.42 3.32
1208 1223 2.202797 TGCTGCTACTGCGCTAGC 60.203 61.111 18.86 18.86 43.34 3.42
1209 1224 2.236382 GCTGCTGCTACTGCGCTAG 61.236 63.158 9.73 7.16 43.34 3.42
1210 1225 2.202797 GCTGCTGCTACTGCGCTA 60.203 61.111 9.73 0.00 43.34 4.26
1211 1226 4.383861 TGCTGCTGCTACTGCGCT 62.384 61.111 17.00 0.00 43.34 5.92
1212 1227 3.862402 CTGCTGCTGCTACTGCGC 61.862 66.667 17.00 0.00 43.34 6.09
1213 1228 2.125793 TCTGCTGCTGCTACTGCG 60.126 61.111 17.00 0.00 43.34 5.18
1214 1229 2.462782 GCTCTGCTGCTGCTACTGC 61.463 63.158 17.00 11.40 40.48 4.40
1215 1230 0.672711 TTGCTCTGCTGCTGCTACTG 60.673 55.000 17.00 5.75 40.48 2.74
1216 1231 0.391395 CTTGCTCTGCTGCTGCTACT 60.391 55.000 17.00 0.00 40.48 2.57
1217 1232 1.979831 GCTTGCTCTGCTGCTGCTAC 61.980 60.000 17.00 4.24 40.48 3.58
1218 1233 1.744368 GCTTGCTCTGCTGCTGCTA 60.744 57.895 17.00 4.24 40.48 3.49
1219 1234 3.056938 GCTTGCTCTGCTGCTGCT 61.057 61.111 17.00 0.00 40.48 4.24
1220 1235 2.916052 TTGCTTGCTCTGCTGCTGC 61.916 57.895 8.89 8.89 40.20 5.25
1221 1236 1.081376 GTTGCTTGCTCTGCTGCTG 60.081 57.895 0.00 0.00 32.36 4.41
1222 1237 2.614446 CGTTGCTTGCTCTGCTGCT 61.614 57.895 0.00 0.00 32.36 4.24
1223 1238 2.121564 TTCGTTGCTTGCTCTGCTGC 62.122 55.000 0.00 0.00 0.00 5.25
1224 1239 0.110328 CTTCGTTGCTTGCTCTGCTG 60.110 55.000 0.00 0.00 0.00 4.41
1225 1240 1.849976 GCTTCGTTGCTTGCTCTGCT 61.850 55.000 0.00 0.00 0.00 4.24
1226 1241 1.441682 GCTTCGTTGCTTGCTCTGC 60.442 57.895 0.00 0.00 0.00 4.26
1227 1242 0.110328 CTGCTTCGTTGCTTGCTCTG 60.110 55.000 4.36 0.00 0.00 3.35
1228 1243 1.849976 GCTGCTTCGTTGCTTGCTCT 61.850 55.000 0.00 0.00 33.25 4.09
1229 1244 1.441682 GCTGCTTCGTTGCTTGCTC 60.442 57.895 0.00 0.00 33.25 4.26
1230 1245 2.641559 GCTGCTTCGTTGCTTGCT 59.358 55.556 0.00 0.00 33.25 3.91
1231 1246 2.715864 TTCGCTGCTTCGTTGCTTGC 62.716 55.000 0.00 7.19 0.00 4.01
1232 1247 0.723790 CTTCGCTGCTTCGTTGCTTG 60.724 55.000 0.00 0.00 0.00 4.01
1233 1248 1.571460 CTTCGCTGCTTCGTTGCTT 59.429 52.632 0.00 0.00 0.00 3.91
1234 1249 2.959357 GCTTCGCTGCTTCGTTGCT 61.959 57.895 0.00 0.00 0.00 3.91
1235 1250 2.500582 GCTTCGCTGCTTCGTTGC 60.501 61.111 0.00 0.00 0.00 4.17
1236 1251 1.154525 CTGCTTCGCTGCTTCGTTG 60.155 57.895 0.00 0.00 0.00 4.10
1237 1252 3.248029 CTGCTTCGCTGCTTCGTT 58.752 55.556 0.00 0.00 0.00 3.85
1248 1263 2.434884 TACTGCCGCTGCTGCTTC 60.435 61.111 16.81 5.60 39.83 3.86
1249 1264 2.435586 CTACTGCCGCTGCTGCTT 60.436 61.111 16.81 6.77 39.83 3.91
1250 1265 2.849120 CTTCTACTGCCGCTGCTGCT 62.849 60.000 16.81 0.47 39.83 4.24
1251 1266 2.434884 TTCTACTGCCGCTGCTGC 60.435 61.111 9.23 9.23 39.83 5.25
1252 1267 2.459442 GCTTCTACTGCCGCTGCTG 61.459 63.158 5.46 5.46 41.75 4.41
1253 1268 2.125350 GCTTCTACTGCCGCTGCT 60.125 61.111 0.70 0.00 38.71 4.24
1254 1269 2.434884 TGCTTCTACTGCCGCTGC 60.435 61.111 0.00 0.00 38.26 5.25
1255 1270 0.173481 TACTGCTTCTACTGCCGCTG 59.827 55.000 0.00 0.00 0.00 5.18
1256 1271 0.457851 CTACTGCTTCTACTGCCGCT 59.542 55.000 0.00 0.00 0.00 5.52
1257 1272 0.528684 CCTACTGCTTCTACTGCCGC 60.529 60.000 0.00 0.00 0.00 6.53
1258 1273 0.528684 GCCTACTGCTTCTACTGCCG 60.529 60.000 0.00 0.00 36.87 5.69
1259 1274 0.537188 TGCCTACTGCTTCTACTGCC 59.463 55.000 0.00 0.00 42.00 4.85
1260 1275 1.205893 ACTGCCTACTGCTTCTACTGC 59.794 52.381 0.00 0.00 42.00 4.40
1261 1276 3.697045 ACTACTGCCTACTGCTTCTACTG 59.303 47.826 0.00 0.00 42.00 2.74
1262 1277 3.697045 CACTACTGCCTACTGCTTCTACT 59.303 47.826 0.00 0.00 42.00 2.57
1263 1278 3.181485 CCACTACTGCCTACTGCTTCTAC 60.181 52.174 0.00 0.00 42.00 2.59
1264 1279 3.024547 CCACTACTGCCTACTGCTTCTA 58.975 50.000 0.00 0.00 42.00 2.10
1265 1280 1.827969 CCACTACTGCCTACTGCTTCT 59.172 52.381 0.00 0.00 42.00 2.85
1266 1281 1.134670 CCCACTACTGCCTACTGCTTC 60.135 57.143 0.00 0.00 42.00 3.86
1267 1282 0.905357 CCCACTACTGCCTACTGCTT 59.095 55.000 0.00 0.00 42.00 3.91
1268 1283 1.617947 GCCCACTACTGCCTACTGCT 61.618 60.000 0.00 0.00 42.00 4.24
1269 1284 1.153349 GCCCACTACTGCCTACTGC 60.153 63.158 0.00 0.00 41.77 4.40
1270 1285 1.141881 CGCCCACTACTGCCTACTG 59.858 63.158 0.00 0.00 0.00 2.74
1271 1286 2.058595 CCGCCCACTACTGCCTACT 61.059 63.158 0.00 0.00 0.00 2.57
1272 1287 2.499685 CCGCCCACTACTGCCTAC 59.500 66.667 0.00 0.00 0.00 3.18
1273 1288 3.467226 GCCGCCCACTACTGCCTA 61.467 66.667 0.00 0.00 0.00 3.93
1276 1291 3.976701 ATGTGCCGCCCACTACTGC 62.977 63.158 6.11 0.00 44.92 4.40
1277 1292 2.108514 CATGTGCCGCCCACTACTG 61.109 63.158 6.11 0.00 44.92 2.74
1278 1293 2.244117 CTCATGTGCCGCCCACTACT 62.244 60.000 6.11 0.00 44.92 2.57
1279 1294 1.815421 CTCATGTGCCGCCCACTAC 60.815 63.158 6.11 0.00 44.92 2.73
1280 1295 1.836999 AACTCATGTGCCGCCCACTA 61.837 55.000 6.11 0.00 44.92 2.74
1281 1296 3.196207 AACTCATGTGCCGCCCACT 62.196 57.895 6.11 0.00 44.92 4.00
1282 1297 2.672996 AACTCATGTGCCGCCCAC 60.673 61.111 0.00 0.00 44.90 4.61
1283 1298 2.359850 GAACTCATGTGCCGCCCA 60.360 61.111 0.00 0.00 0.00 5.36
1284 1299 2.045926 AGAACTCATGTGCCGCCC 60.046 61.111 0.00 0.00 0.00 6.13
1285 1300 3.044059 GCAGAACTCATGTGCCGCC 62.044 63.158 0.00 0.00 42.30 6.13
1286 1301 2.482374 GCAGAACTCATGTGCCGC 59.518 61.111 0.00 0.00 42.30 6.53
1287 1302 2.029288 ACGCAGAACTCATGTGCCG 61.029 57.895 0.00 0.00 45.17 5.69
1288 1303 1.230635 ACACGCAGAACTCATGTGCC 61.231 55.000 0.00 0.00 45.17 5.01
1289 1304 1.428448 TACACGCAGAACTCATGTGC 58.572 50.000 0.00 0.00 44.55 4.57
1290 1305 3.121944 GTCTTACACGCAGAACTCATGTG 59.878 47.826 0.00 0.00 36.64 3.21
1291 1306 3.243737 TGTCTTACACGCAGAACTCATGT 60.244 43.478 0.00 0.00 0.00 3.21
1292 1307 3.317150 TGTCTTACACGCAGAACTCATG 58.683 45.455 0.00 0.00 0.00 3.07
1293 1308 3.660501 TGTCTTACACGCAGAACTCAT 57.339 42.857 0.00 0.00 0.00 2.90
1294 1309 3.446310 TTGTCTTACACGCAGAACTCA 57.554 42.857 0.00 0.00 0.00 3.41
1295 1310 5.634020 ACTTATTGTCTTACACGCAGAACTC 59.366 40.000 0.00 0.00 0.00 3.01
1296 1311 5.539048 ACTTATTGTCTTACACGCAGAACT 58.461 37.500 0.00 0.00 0.00 3.01
1533 1549 9.606631 GTTTATCTCATCTAAGGATCAACTTGT 57.393 33.333 0.00 0.00 32.02 3.16
1670 1686 7.557719 CCTCCTATTCTTTGGTGTGATAACATT 59.442 37.037 0.00 0.00 0.00 2.71
1781 1797 1.135774 TCACGTAGCAGTACTGAAGCG 60.136 52.381 27.08 24.29 0.00 4.68
1834 1850 6.127647 TGCAGTATTCTTTGGCTCTAATTTGG 60.128 38.462 0.00 0.00 0.00 3.28
2056 2072 7.492994 CGATCACGAGACCAGATATCTCTTATA 59.507 40.741 1.03 0.00 40.47 0.98
2111 2127 1.393603 CGGATGCCAGAGAGTACAGA 58.606 55.000 0.00 0.00 0.00 3.41
2121 2137 2.202987 GTCTCCTGCGGATGCCAG 60.203 66.667 0.00 0.00 41.78 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.