Multiple sequence alignment - TraesCS1A01G137100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G137100 chr1A 100.000 2336 0 0 1 2336 220175307 220177642 0.000000e+00 4314.0
1 TraesCS1A01G137100 chr1A 93.741 2189 134 3 1 2189 220167278 220169463 0.000000e+00 3280.0
2 TraesCS1A01G137100 chr1A 78.537 629 89 36 1596 2189 488034615 488033998 2.830000e-99 372.0
3 TraesCS1A01G137100 chr1A 97.087 103 3 0 2190 2292 219951471 219951573 8.580000e-40 174.0
4 TraesCS1A01G137100 chr4A 89.750 800 79 3 414 1213 261292187 261291391 0.000000e+00 1020.0
5 TraesCS1A01G137100 chr4A 88.417 777 89 1 414 1190 261284160 261283385 0.000000e+00 935.0
6 TraesCS1A01G137100 chr4A 90.620 661 60 2 550 1210 88659430 88660088 0.000000e+00 876.0
7 TraesCS1A01G137100 chr4A 90.318 661 62 2 550 1210 274462751 274463409 0.000000e+00 865.0
8 TraesCS1A01G137100 chr4A 90.557 413 34 4 17 425 441786503 441786914 2.040000e-150 542.0
9 TraesCS1A01G137100 chr4A 89.372 414 37 6 17 425 441802763 441803174 4.450000e-142 514.0
10 TraesCS1A01G137100 chr4A 100.000 44 0 0 2293 2336 316131625 316131582 5.350000e-12 82.4
11 TraesCS1A01G137100 chr4A 100.000 28 0 0 398 425 46805800 46805827 4.000000e-03 52.8
12 TraesCS1A01G137100 chr5A 91.566 664 54 2 550 1213 573874416 573873755 0.000000e+00 915.0
13 TraesCS1A01G137100 chr5A 90.981 377 31 3 6 379 154365502 154365878 2.680000e-139 505.0
14 TraesCS1A01G137100 chr5A 88.571 140 13 3 385 522 260136433 260136571 1.440000e-37 167.0
15 TraesCS1A01G137100 chr2A 90.469 661 59 3 550 1210 635476397 635477053 0.000000e+00 869.0
16 TraesCS1A01G137100 chr2A 90.396 656 61 2 550 1205 635484496 635485149 0.000000e+00 861.0
17 TraesCS1A01G137100 chr2A 90.060 664 64 2 550 1213 94064213 94063552 0.000000e+00 859.0
18 TraesCS1A01G137100 chr2A 84.932 511 56 18 1690 2185 234119807 234120311 4.480000e-137 497.0
19 TraesCS1A01G137100 chr2A 76.774 620 88 36 1594 2183 245036957 245037550 1.760000e-76 296.0
20 TraesCS1A01G137100 chr1D 81.638 1111 147 43 1111 2189 54701520 54702605 0.000000e+00 869.0
21 TraesCS1A01G137100 chr1D 80.448 1115 156 45 1104 2187 54692976 54694059 0.000000e+00 795.0
22 TraesCS1A01G137100 chr1D 90.354 508 43 6 1104 1609 244044330 244044833 0.000000e+00 662.0
23 TraesCS1A01G137100 chr1D 94.495 109 5 1 2184 2292 151680384 151680491 1.440000e-37 167.0
24 TraesCS1A01G137100 chr1D 94.495 109 5 1 2184 2292 151690759 151690866 1.440000e-37 167.0
25 TraesCS1A01G137100 chr1D 100.000 44 0 0 2293 2336 259022688 259022645 5.350000e-12 82.4
26 TraesCS1A01G137100 chr4D 91.515 495 38 4 1111 1602 150429428 150429921 0.000000e+00 678.0
27 TraesCS1A01G137100 chr4D 75.043 585 88 43 1483 2037 299301177 299301733 3.910000e-53 219.0
28 TraesCS1A01G137100 chr4D 96.078 51 0 2 2286 2336 213438328 213438376 5.350000e-12 82.4
29 TraesCS1A01G137100 chr3A 87.959 490 46 11 1 485 292788708 292789189 1.210000e-157 566.0
30 TraesCS1A01G137100 chr3A 86.789 492 53 10 1 488 292796681 292797164 2.640000e-149 538.0
31 TraesCS1A01G137100 chr3A 83.061 490 62 16 1 485 252191154 252191627 2.150000e-115 425.0
32 TraesCS1A01G137100 chr6A 86.166 506 59 10 1690 2189 367500665 367500165 9.500000e-149 536.0
33 TraesCS1A01G137100 chr6A 93.155 336 22 1 1 335 25819556 25819221 2.090000e-135 492.0
34 TraesCS1A01G137100 chr6A 89.005 382 39 3 1 379 138659859 138660240 9.770000e-129 470.0
35 TraesCS1A01G137100 chr6A 89.005 382 39 3 1 379 138721629 138722010 9.770000e-129 470.0
36 TraesCS1A01G137100 chr6A 75.149 503 93 28 9 485 221617771 221618267 8.460000e-50 207.0
37 TraesCS1A01G137100 chr6A 76.190 462 68 23 1763 2189 263326159 263325705 3.040000e-49 206.0
38 TraesCS1A01G137100 chr4B 85.965 513 56 14 1686 2189 643905484 643905989 3.420000e-148 534.0
39 TraesCS1A01G137100 chr4B 85.992 514 55 15 1686 2190 643913291 643913796 3.420000e-148 534.0
40 TraesCS1A01G137100 chr4B 85.249 522 67 8 1675 2189 547975963 547975445 1.590000e-146 529.0
41 TraesCS1A01G137100 chr4B 85.950 484 58 10 1689 2165 547952676 547952196 2.070000e-140 508.0
42 TraesCS1A01G137100 chr4B 90.311 289 27 1 1135 1423 619994206 619993919 6.090000e-101 377.0
43 TraesCS1A01G137100 chr4B 90.311 289 27 1 1135 1423 620020333 620020046 6.090000e-101 377.0
44 TraesCS1A01G137100 chr4B 88.581 289 31 2 1135 1423 620002023 620001737 1.330000e-92 350.0
45 TraesCS1A01G137100 chr2B 85.352 512 59 14 1686 2189 478136523 478137026 1.240000e-142 516.0
46 TraesCS1A01G137100 chr2B 88.927 289 31 1 1135 1423 409141038 409141325 2.860000e-94 355.0
47 TraesCS1A01G137100 chr6B 83.549 541 66 17 1675 2197 265154969 265155504 3.490000e-133 484.0
48 TraesCS1A01G137100 chr6B 73.739 773 113 61 1469 2189 100401130 100400396 1.090000e-53 220.0
49 TraesCS1A01G137100 chr7D 81.073 634 79 33 1587 2194 343666070 343666688 3.510000e-128 468.0
50 TraesCS1A01G137100 chr7D 79.362 596 82 27 1593 2165 343674302 343674879 4.710000e-102 381.0
51 TraesCS1A01G137100 chr7D 96.078 51 0 2 2286 2336 55019653 55019701 5.350000e-12 82.4
52 TraesCS1A01G137100 chr3D 80.435 644 85 30 1572 2189 407239648 407239020 9.840000e-124 453.0
53 TraesCS1A01G137100 chr3D 100.000 44 0 0 2293 2336 23178241 23178198 5.350000e-12 82.4
54 TraesCS1A01G137100 chr3D 100.000 44 0 0 2293 2336 23187569 23187526 5.350000e-12 82.4
55 TraesCS1A01G137100 chr3D 100.000 44 0 0 2293 2336 237739518 237739475 5.350000e-12 82.4
56 TraesCS1A01G137100 chr3D 100.000 44 0 0 2293 2336 244863226 244863183 5.350000e-12 82.4
57 TraesCS1A01G137100 chr6D 79.294 652 90 34 1572 2194 125385194 125385829 4.640000e-112 414.0
58 TraesCS1A01G137100 chr6D 100.000 44 0 0 2293 2336 435116581 435116538 5.350000e-12 82.4
59 TraesCS1A01G137100 chr7A 93.532 201 13 0 414 614 665091927 665091727 1.360000e-77 300.0
60 TraesCS1A01G137100 chr7A 77.799 527 85 27 9 522 239663356 239663863 1.760000e-76 296.0
61 TraesCS1A01G137100 chr7A 91.542 201 17 0 414 614 665084845 665084645 6.360000e-71 278.0
62 TraesCS1A01G137100 chr7A 97.059 102 3 0 2190 2291 538737678 538737779 3.090000e-39 172.0
63 TraesCS1A01G137100 chr7B 75.716 663 84 52 1463 2094 475983349 475983965 6.400000e-66 261.0
64 TraesCS1A01G137100 chr7B 75.799 657 82 55 1469 2094 475991066 475991676 6.400000e-66 261.0
65 TraesCS1A01G137100 chr5B 99.029 103 1 0 2190 2292 366946255 366946153 3.960000e-43 185.0
66 TraesCS1A01G137100 chr5B 98.058 103 2 0 2190 2292 366925158 366925056 1.840000e-41 180.0
67 TraesCS1A01G137100 chr3B 97.248 109 3 0 2184 2292 176737029 176737137 3.960000e-43 185.0
68 TraesCS1A01G137100 chr1B 98.000 100 2 0 2193 2292 310039694 310039595 8.580000e-40 174.0
69 TraesCS1A01G137100 chr1B 97.087 103 3 0 2190 2292 310075208 310075106 8.580000e-40 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G137100 chr1A 220175307 220177642 2335 False 4314 4314 100.000 1 2336 1 chr1A.!!$F3 2335
1 TraesCS1A01G137100 chr1A 220167278 220169463 2185 False 3280 3280 93.741 1 2189 1 chr1A.!!$F2 2188
2 TraesCS1A01G137100 chr1A 488033998 488034615 617 True 372 372 78.537 1596 2189 1 chr1A.!!$R1 593
3 TraesCS1A01G137100 chr4A 261291391 261292187 796 True 1020 1020 89.750 414 1213 1 chr4A.!!$R2 799
4 TraesCS1A01G137100 chr4A 261283385 261284160 775 True 935 935 88.417 414 1190 1 chr4A.!!$R1 776
5 TraesCS1A01G137100 chr4A 88659430 88660088 658 False 876 876 90.620 550 1210 1 chr4A.!!$F2 660
6 TraesCS1A01G137100 chr4A 274462751 274463409 658 False 865 865 90.318 550 1210 1 chr4A.!!$F3 660
7 TraesCS1A01G137100 chr5A 573873755 573874416 661 True 915 915 91.566 550 1213 1 chr5A.!!$R1 663
8 TraesCS1A01G137100 chr2A 635476397 635477053 656 False 869 869 90.469 550 1210 1 chr2A.!!$F3 660
9 TraesCS1A01G137100 chr2A 635484496 635485149 653 False 861 861 90.396 550 1205 1 chr2A.!!$F4 655
10 TraesCS1A01G137100 chr2A 94063552 94064213 661 True 859 859 90.060 550 1213 1 chr2A.!!$R1 663
11 TraesCS1A01G137100 chr2A 234119807 234120311 504 False 497 497 84.932 1690 2185 1 chr2A.!!$F1 495
12 TraesCS1A01G137100 chr2A 245036957 245037550 593 False 296 296 76.774 1594 2183 1 chr2A.!!$F2 589
13 TraesCS1A01G137100 chr1D 54701520 54702605 1085 False 869 869 81.638 1111 2189 1 chr1D.!!$F2 1078
14 TraesCS1A01G137100 chr1D 54692976 54694059 1083 False 795 795 80.448 1104 2187 1 chr1D.!!$F1 1083
15 TraesCS1A01G137100 chr1D 244044330 244044833 503 False 662 662 90.354 1104 1609 1 chr1D.!!$F5 505
16 TraesCS1A01G137100 chr4D 299301177 299301733 556 False 219 219 75.043 1483 2037 1 chr4D.!!$F3 554
17 TraesCS1A01G137100 chr6A 367500165 367500665 500 True 536 536 86.166 1690 2189 1 chr6A.!!$R3 499
18 TraesCS1A01G137100 chr4B 643905484 643905989 505 False 534 534 85.965 1686 2189 1 chr4B.!!$F1 503
19 TraesCS1A01G137100 chr4B 643913291 643913796 505 False 534 534 85.992 1686 2190 1 chr4B.!!$F2 504
20 TraesCS1A01G137100 chr4B 547975445 547975963 518 True 529 529 85.249 1675 2189 1 chr4B.!!$R2 514
21 TraesCS1A01G137100 chr2B 478136523 478137026 503 False 516 516 85.352 1686 2189 1 chr2B.!!$F2 503
22 TraesCS1A01G137100 chr6B 265154969 265155504 535 False 484 484 83.549 1675 2197 1 chr6B.!!$F1 522
23 TraesCS1A01G137100 chr6B 100400396 100401130 734 True 220 220 73.739 1469 2189 1 chr6B.!!$R1 720
24 TraesCS1A01G137100 chr7D 343666070 343666688 618 False 468 468 81.073 1587 2194 1 chr7D.!!$F2 607
25 TraesCS1A01G137100 chr7D 343674302 343674879 577 False 381 381 79.362 1593 2165 1 chr7D.!!$F3 572
26 TraesCS1A01G137100 chr3D 407239020 407239648 628 True 453 453 80.435 1572 2189 1 chr3D.!!$R5 617
27 TraesCS1A01G137100 chr6D 125385194 125385829 635 False 414 414 79.294 1572 2194 1 chr6D.!!$F1 622
28 TraesCS1A01G137100 chr7A 239663356 239663863 507 False 296 296 77.799 9 522 1 chr7A.!!$F1 513
29 TraesCS1A01G137100 chr7B 475983349 475983965 616 False 261 261 75.716 1463 2094 1 chr7B.!!$F1 631
30 TraesCS1A01G137100 chr7B 475991066 475991676 610 False 261 261 75.799 1469 2094 1 chr7B.!!$F2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 60 0.260230 TGGAAAGAAAGGGTGCCACA 59.740 50.0 0.00 0.0 0.00 4.17 F
205 212 0.533032 GAGTTAGCGGCAGAAGAGGT 59.467 55.0 1.45 0.0 0.00 3.85 F
1296 1337 0.036952 CAGCAGGATGGAGTGAACGT 60.037 55.0 0.00 0.0 35.86 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1337 0.318441 CCTCAACTGCCAAGTCTCGA 59.682 55.0 0.0 0.0 34.77 4.04 R
1308 1349 0.469917 CACCACCAGTGTCCTCAACT 59.530 55.0 0.0 0.0 41.93 3.16 R
2255 2385 0.104409 ACCACCTCCACCTCCTTTCT 60.104 55.0 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.321945 AGCATATTATGAAGCATTTGTCACCA 59.678 34.615 7.87 0.00 0.00 4.17
57 60 0.260230 TGGAAAGAAAGGGTGCCACA 59.740 50.000 0.00 0.00 0.00 4.17
93 96 5.680594 AAATGATGCCACAACACCATATT 57.319 34.783 0.00 0.00 0.00 1.28
119 122 1.336332 CGGAAGCTCATGGAGATACCG 60.336 57.143 0.00 0.00 42.61 4.02
193 198 2.582978 GGGTCCCCACGAGTTAGC 59.417 66.667 0.00 0.00 35.81 3.09
205 212 0.533032 GAGTTAGCGGCAGAAGAGGT 59.467 55.000 1.45 0.00 0.00 3.85
240 247 1.070786 AACTCGGACACGGTGCAAT 59.929 52.632 8.30 0.00 41.39 3.56
307 316 1.262683 GTCTCGACGTTATACCTCCGG 59.737 57.143 0.00 0.00 0.00 5.14
326 335 1.880601 GAGCGTGCATTATCGGAGCG 61.881 60.000 0.00 0.00 0.00 5.03
327 336 2.943345 GCGTGCATTATCGGAGCGG 61.943 63.158 0.00 0.00 0.00 5.52
391 432 6.253727 GTCGTTCATGTTCATAGTGGAAGTAG 59.746 42.308 0.00 0.00 0.00 2.57
393 434 6.253727 CGTTCATGTTCATAGTGGAAGTAGTC 59.746 42.308 0.00 0.00 0.00 2.59
400 441 2.701073 AGTGGAAGTAGTCGTTCACG 57.299 50.000 0.00 0.00 41.45 4.35
404 445 1.974680 GGAAGTAGTCGTTCACGTTCG 59.025 52.381 0.00 0.00 40.80 3.95
412 453 1.333308 TCGTTCACGTTCGTAGTGGAA 59.667 47.619 0.00 0.00 39.86 3.53
425 466 3.058708 CGTAGTGGAAGTAGTCGTTCACA 60.059 47.826 0.00 0.00 0.00 3.58
544 585 5.006552 CACGTTTTTGGGAAGTAGTTTACGA 59.993 40.000 0.00 0.00 0.00 3.43
545 586 5.759763 ACGTTTTTGGGAAGTAGTTTACGAT 59.240 36.000 0.00 0.00 0.00 3.73
622 663 3.764972 TCGGTAGATGTACATGTTGGTGA 59.235 43.478 14.43 3.21 0.00 4.02
627 668 7.272978 GGTAGATGTACATGTTGGTGATAGTT 58.727 38.462 14.43 0.00 0.00 2.24
653 694 3.358111 TGGCATATCCAAGGTTTTCGA 57.642 42.857 0.00 0.00 43.21 3.71
666 707 7.286087 TCCAAGGTTTTCGATGCTATAGTAGTA 59.714 37.037 0.84 0.00 0.00 1.82
821 862 2.808315 CTCGCGGCTCCATGTAGT 59.192 61.111 6.13 0.00 0.00 2.73
824 865 1.878522 CGCGGCTCCATGTAGTGAC 60.879 63.158 0.00 0.00 0.00 3.67
946 987 2.040464 ATCCACCGGATCCTGGCT 60.040 61.111 9.46 6.56 38.09 4.75
983 1024 1.084370 CGTCATTCGGTGGAGAAGCC 61.084 60.000 0.00 0.00 33.19 4.35
1042 1083 2.985456 CGAAGGAGCTTGAGGGCT 59.015 61.111 0.00 0.00 46.11 5.19
1107 1148 4.664267 AGAGGCAGCCAGGGGACA 62.664 66.667 15.80 0.00 0.00 4.02
1173 1214 4.363990 CGCGACACTGCAGGAGGT 62.364 66.667 19.93 13.10 34.15 3.85
1247 1288 2.099652 CTGACCTCCGGAGCACAACA 62.100 60.000 26.87 17.40 0.00 3.33
1296 1337 0.036952 CAGCAGGATGGAGTGAACGT 60.037 55.000 0.00 0.00 35.86 3.99
1308 1349 0.596600 GTGAACGTCGAGACTTGGCA 60.597 55.000 0.00 0.00 0.00 4.92
1403 1444 4.390556 AGCTCCTCTCCCTGGCGT 62.391 66.667 0.00 0.00 0.00 5.68
1433 1474 1.599797 CGAGTGGGGCGGAAAAAGT 60.600 57.895 0.00 0.00 0.00 2.66
1496 1543 1.156330 GAGAGATGGGGATCGGGGA 59.844 63.158 0.00 0.00 0.00 4.81
1517 1564 5.401119 GGGATAGGGTTAAGAAGAGAGGGTA 60.401 48.000 0.00 0.00 0.00 3.69
1731 1797 8.510243 AAAATGAGCTTGTTCCAAGAAAAATT 57.490 26.923 8.11 0.13 0.00 1.82
1807 1886 4.081586 ACAAGGAGTAGGAATCCGAAGTTC 60.082 45.833 0.00 0.00 42.02 3.01
1843 1922 4.065321 ACATTTAGGAAGAGCCTCGATG 57.935 45.455 0.00 0.00 46.97 3.84
1853 1932 5.220681 GGAAGAGCCTCGATGAAACAATAAC 60.221 44.000 0.00 0.00 0.00 1.89
1993 2091 5.036916 TGGGAGGGTATGTTGTAAAGAGAT 58.963 41.667 0.00 0.00 0.00 2.75
1997 2098 7.283329 GGAGGGTATGTTGTAAAGAGATTCAT 58.717 38.462 0.00 0.00 0.00 2.57
2167 2297 2.496899 AACATGGAAGGCGTCTGAAT 57.503 45.000 0.00 0.00 0.00 2.57
2191 2321 1.668151 GTCTTGGGGCGTCACACTC 60.668 63.158 0.00 0.00 0.00 3.51
2192 2322 1.837051 TCTTGGGGCGTCACACTCT 60.837 57.895 0.00 0.00 0.00 3.24
2193 2323 1.374758 CTTGGGGCGTCACACTCTC 60.375 63.158 0.00 0.00 0.00 3.20
2194 2324 1.821061 CTTGGGGCGTCACACTCTCT 61.821 60.000 0.00 0.00 0.00 3.10
2196 2326 2.276116 GGGGCGTCACACTCTCTCA 61.276 63.158 0.00 0.00 0.00 3.27
2197 2327 1.666011 GGGCGTCACACTCTCTCAA 59.334 57.895 0.00 0.00 0.00 3.02
2198 2328 0.389166 GGGCGTCACACTCTCTCAAG 60.389 60.000 0.00 0.00 0.00 3.02
2199 2329 0.598562 GGCGTCACACTCTCTCAAGA 59.401 55.000 0.00 0.00 0.00 3.02
2215 2345 4.676799 TCAAGAGGAGAAGGTAGGAGAA 57.323 45.455 0.00 0.00 0.00 2.87
2216 2346 5.011982 TCAAGAGGAGAAGGTAGGAGAAA 57.988 43.478 0.00 0.00 0.00 2.52
2217 2347 5.403512 TCAAGAGGAGAAGGTAGGAGAAAA 58.596 41.667 0.00 0.00 0.00 2.29
2218 2348 5.482175 TCAAGAGGAGAAGGTAGGAGAAAAG 59.518 44.000 0.00 0.00 0.00 2.27
2219 2349 3.772572 AGAGGAGAAGGTAGGAGAAAAGC 59.227 47.826 0.00 0.00 0.00 3.51
2220 2350 3.772572 GAGGAGAAGGTAGGAGAAAAGCT 59.227 47.826 0.00 0.00 0.00 3.74
2221 2351 3.772572 AGGAGAAGGTAGGAGAAAAGCTC 59.227 47.826 0.00 0.00 43.17 4.09
2222 2352 3.515901 GGAGAAGGTAGGAGAAAAGCTCA 59.484 47.826 0.00 0.00 45.81 4.26
2223 2353 4.500127 GAGAAGGTAGGAGAAAAGCTCAC 58.500 47.826 0.00 0.00 45.81 3.51
2224 2354 3.904339 AGAAGGTAGGAGAAAAGCTCACA 59.096 43.478 0.00 0.00 45.81 3.58
2225 2355 4.534103 AGAAGGTAGGAGAAAAGCTCACAT 59.466 41.667 0.00 0.00 45.81 3.21
2226 2356 5.721960 AGAAGGTAGGAGAAAAGCTCACATA 59.278 40.000 0.00 0.00 45.81 2.29
2227 2357 5.346181 AGGTAGGAGAAAAGCTCACATAC 57.654 43.478 0.00 0.00 45.81 2.39
2228 2358 4.777896 AGGTAGGAGAAAAGCTCACATACA 59.222 41.667 0.00 0.00 45.81 2.29
2229 2359 5.248477 AGGTAGGAGAAAAGCTCACATACAA 59.752 40.000 0.00 0.00 45.81 2.41
2230 2360 5.938125 GGTAGGAGAAAAGCTCACATACAAA 59.062 40.000 0.00 0.00 45.81 2.83
2231 2361 6.599638 GGTAGGAGAAAAGCTCACATACAAAT 59.400 38.462 0.00 0.00 45.81 2.32
2232 2362 6.506500 AGGAGAAAAGCTCACATACAAATG 57.493 37.500 0.00 0.00 45.81 2.32
2233 2363 6.240894 AGGAGAAAAGCTCACATACAAATGA 58.759 36.000 0.00 0.00 45.81 2.57
2234 2364 6.373774 AGGAGAAAAGCTCACATACAAATGAG 59.626 38.462 0.00 0.00 45.81 2.90
2247 2377 9.338291 CACATACAAATGAGCTATCATATTTGC 57.662 33.333 14.52 0.00 45.67 3.68
2248 2378 9.293404 ACATACAAATGAGCTATCATATTTGCT 57.707 29.630 14.52 0.00 45.67 3.91
2252 2382 8.571336 ACAAATGAGCTATCATATTTGCTAACC 58.429 33.333 14.52 0.00 45.67 2.85
2253 2383 7.693969 AATGAGCTATCATATTTGCTAACCC 57.306 36.000 0.00 0.00 45.67 4.11
2254 2384 6.439636 TGAGCTATCATATTTGCTAACCCT 57.560 37.500 0.00 0.00 35.76 4.34
2255 2385 7.553504 TGAGCTATCATATTTGCTAACCCTA 57.446 36.000 0.00 0.00 35.76 3.53
2256 2386 7.615403 TGAGCTATCATATTTGCTAACCCTAG 58.385 38.462 0.00 0.00 35.76 3.02
2257 2387 7.454694 TGAGCTATCATATTTGCTAACCCTAGA 59.545 37.037 0.00 0.00 35.76 2.43
2258 2388 8.207350 AGCTATCATATTTGCTAACCCTAGAA 57.793 34.615 0.00 0.00 33.64 2.10
2259 2389 8.660435 AGCTATCATATTTGCTAACCCTAGAAA 58.340 33.333 0.00 0.00 33.64 2.52
2260 2390 8.940952 GCTATCATATTTGCTAACCCTAGAAAG 58.059 37.037 0.00 0.00 0.00 2.62
2261 2391 9.442047 CTATCATATTTGCTAACCCTAGAAAGG 57.558 37.037 0.00 0.00 43.25 3.11
2273 2403 1.834263 CTAGAAAGGAGGTGGAGGTGG 59.166 57.143 0.00 0.00 0.00 4.61
2274 2404 0.104409 AGAAAGGAGGTGGAGGTGGT 60.104 55.000 0.00 0.00 0.00 4.16
2275 2405 0.325272 GAAAGGAGGTGGAGGTGGTC 59.675 60.000 0.00 0.00 0.00 4.02
2276 2406 0.104409 AAAGGAGGTGGAGGTGGTCT 60.104 55.000 0.00 0.00 0.00 3.85
2277 2407 0.790993 AAGGAGGTGGAGGTGGTCTA 59.209 55.000 0.00 0.00 0.00 2.59
2278 2408 1.019650 AGGAGGTGGAGGTGGTCTAT 58.980 55.000 0.00 0.00 0.00 1.98
2279 2409 1.366435 AGGAGGTGGAGGTGGTCTATT 59.634 52.381 0.00 0.00 0.00 1.73
2280 2410 2.197465 GGAGGTGGAGGTGGTCTATTT 58.803 52.381 0.00 0.00 0.00 1.40
2281 2411 3.013648 AGGAGGTGGAGGTGGTCTATTTA 59.986 47.826 0.00 0.00 0.00 1.40
2282 2412 3.974642 GGAGGTGGAGGTGGTCTATTTAT 59.025 47.826 0.00 0.00 0.00 1.40
2283 2413 5.102783 AGGAGGTGGAGGTGGTCTATTTATA 60.103 44.000 0.00 0.00 0.00 0.98
2284 2414 5.246429 GGAGGTGGAGGTGGTCTATTTATAG 59.754 48.000 0.00 0.00 0.00 1.31
2285 2415 5.789535 AGGTGGAGGTGGTCTATTTATAGT 58.210 41.667 0.00 0.00 0.00 2.12
2286 2416 5.839606 AGGTGGAGGTGGTCTATTTATAGTC 59.160 44.000 0.00 0.00 0.00 2.59
2287 2417 5.839606 GGTGGAGGTGGTCTATTTATAGTCT 59.160 44.000 0.00 0.00 0.00 3.24
2288 2418 7.008941 GGTGGAGGTGGTCTATTTATAGTCTA 58.991 42.308 0.00 0.00 0.00 2.59
2289 2419 7.508296 GGTGGAGGTGGTCTATTTATAGTCTAA 59.492 40.741 0.00 0.00 0.00 2.10
2290 2420 8.578151 GTGGAGGTGGTCTATTTATAGTCTAAG 58.422 40.741 0.00 0.00 0.00 2.18
2291 2421 7.232941 TGGAGGTGGTCTATTTATAGTCTAAGC 59.767 40.741 0.00 0.00 0.00 3.09
2292 2422 7.216973 AGGTGGTCTATTTATAGTCTAAGCG 57.783 40.000 0.00 0.00 0.00 4.68
2293 2423 6.208994 AGGTGGTCTATTTATAGTCTAAGCGG 59.791 42.308 0.00 0.00 0.00 5.52
2294 2424 6.015603 GGTGGTCTATTTATAGTCTAAGCGGT 60.016 42.308 0.00 0.00 0.00 5.68
2295 2425 7.432059 GTGGTCTATTTATAGTCTAAGCGGTT 58.568 38.462 4.76 4.76 0.00 4.44
2296 2426 8.571336 GTGGTCTATTTATAGTCTAAGCGGTTA 58.429 37.037 6.91 6.91 0.00 2.85
2297 2427 8.790718 TGGTCTATTTATAGTCTAAGCGGTTAG 58.209 37.037 24.91 24.91 37.58 2.34
2311 2441 3.675467 CGGTTAGCATTGGTTTAGCTC 57.325 47.619 0.00 0.00 39.68 4.09
2312 2442 3.006940 CGGTTAGCATTGGTTTAGCTCA 58.993 45.455 0.00 0.00 39.68 4.26
2313 2443 3.627577 CGGTTAGCATTGGTTTAGCTCAT 59.372 43.478 0.00 0.00 39.68 2.90
2314 2444 4.814234 CGGTTAGCATTGGTTTAGCTCATA 59.186 41.667 0.00 0.00 39.68 2.15
2315 2445 5.277345 CGGTTAGCATTGGTTTAGCTCATAC 60.277 44.000 0.00 0.00 39.68 2.39
2316 2446 5.823045 GGTTAGCATTGGTTTAGCTCATACT 59.177 40.000 0.00 0.00 39.68 2.12
2317 2447 6.318900 GGTTAGCATTGGTTTAGCTCATACTT 59.681 38.462 0.00 0.00 39.68 2.24
2318 2448 5.824904 AGCATTGGTTTAGCTCATACTTG 57.175 39.130 0.00 0.00 32.05 3.16
2319 2449 5.500234 AGCATTGGTTTAGCTCATACTTGA 58.500 37.500 0.00 0.00 32.05 3.02
2333 2463 6.477053 TCATACTTGAGATAGAGCTTTGCT 57.523 37.500 0.00 0.00 43.88 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.632589 GCACCCTTTCTTTCCACCAT 58.367 50.000 0.00 0.00 0.00 3.55
57 60 3.304257 GCATCATTTTCGGATTCATCGCT 60.304 43.478 0.00 0.00 0.00 4.93
93 96 1.198094 TCCATGAGCTTCCGGAACCA 61.198 55.000 14.35 11.94 0.00 3.67
102 105 1.414181 CACCGGTATCTCCATGAGCTT 59.586 52.381 6.87 0.00 35.57 3.74
119 122 1.363807 GCCACACTTCCTTTGCACC 59.636 57.895 0.00 0.00 0.00 5.01
193 198 2.266055 GGTCCACCTCTTCTGCCG 59.734 66.667 0.00 0.00 0.00 5.69
205 212 0.531974 GTTGTCACTTGCTCGGTCCA 60.532 55.000 0.00 0.00 0.00 4.02
240 247 4.408596 TGATGTATGAGTTGCACCCTATGA 59.591 41.667 0.00 0.00 0.00 2.15
304 313 2.310233 CCGATAATGCACGCTCCGG 61.310 63.158 0.00 0.00 0.00 5.14
305 314 1.278172 CTCCGATAATGCACGCTCCG 61.278 60.000 0.00 0.00 0.00 4.63
307 316 1.856012 GCTCCGATAATGCACGCTC 59.144 57.895 0.00 0.00 0.00 5.03
326 335 2.140717 ACATTCCGTCAAACTCGAACC 58.859 47.619 0.00 0.00 0.00 3.62
327 336 3.985925 ACTACATTCCGTCAAACTCGAAC 59.014 43.478 0.00 0.00 0.00 3.95
374 415 5.242171 TGAACGACTACTTCCACTATGAACA 59.758 40.000 0.00 0.00 0.00 3.18
375 416 5.572126 GTGAACGACTACTTCCACTATGAAC 59.428 44.000 0.00 0.00 0.00 3.18
391 432 1.047739 CCACTACGAACGTGAACGAC 58.952 55.000 10.26 2.65 43.02 4.34
393 434 1.712350 CTTCCACTACGAACGTGAACG 59.288 52.381 10.14 0.40 46.33 3.95
400 441 3.820777 ACGACTACTTCCACTACGAAC 57.179 47.619 0.00 0.00 0.00 3.95
404 445 4.494350 TGTGAACGACTACTTCCACTAC 57.506 45.455 0.00 0.00 0.00 2.73
412 453 3.667261 CGAAACGAATGTGAACGACTACT 59.333 43.478 0.00 0.00 0.00 2.57
425 466 3.508793 TCAAGTACCTCTCCGAAACGAAT 59.491 43.478 0.00 0.00 0.00 3.34
528 569 4.468510 ACCATCATCGTAAACTACTTCCCA 59.531 41.667 0.00 0.00 0.00 4.37
544 585 3.195610 TCAGCAAGTTCGACTACCATCAT 59.804 43.478 0.00 0.00 0.00 2.45
545 586 2.560981 TCAGCAAGTTCGACTACCATCA 59.439 45.455 0.00 0.00 0.00 3.07
653 694 8.504815 CGAATGTGTGTACTACTACTATAGCAT 58.495 37.037 0.00 0.00 0.00 3.79
666 707 2.803956 TCCTCTCCGAATGTGTGTACT 58.196 47.619 0.00 0.00 0.00 2.73
821 862 2.594303 CGCCCCTGCTTTGTGTCA 60.594 61.111 0.00 0.00 34.43 3.58
824 865 3.346631 GATGCGCCCCTGCTTTGTG 62.347 63.158 4.18 0.00 35.36 3.33
958 999 2.431771 CACCGAATGACGTCGCCA 60.432 61.111 11.62 0.00 39.74 5.69
1008 1049 4.760047 GCCAGCTTCGCCTTCCGA 62.760 66.667 0.00 0.00 45.77 4.55
1107 1148 1.254284 CGCAGTCCTCCTCCAACTCT 61.254 60.000 0.00 0.00 0.00 3.24
1165 1206 4.537433 CGCCCTGCTACCTCCTGC 62.537 72.222 0.00 0.00 0.00 4.85
1296 1337 0.318441 CCTCAACTGCCAAGTCTCGA 59.682 55.000 0.00 0.00 34.77 4.04
1308 1349 0.469917 CACCACCAGTGTCCTCAACT 59.530 55.000 0.00 0.00 41.93 3.16
1403 1444 1.000771 CCACTCGTCTCCCTCCTCA 60.001 63.158 0.00 0.00 0.00 3.86
1496 1543 6.358443 ACTACCCTCTCTTCTTAACCCTAT 57.642 41.667 0.00 0.00 0.00 2.57
1517 1564 3.175710 AACCAGGCCCAACCGACT 61.176 61.111 0.00 0.00 46.52 4.18
1582 1629 2.438021 GGAGAGAGTGAGAGAGAGCCTA 59.562 54.545 0.00 0.00 0.00 3.93
1843 1922 9.994432 CTTGTCCTCATATTCTGTTATTGTTTC 57.006 33.333 0.00 0.00 0.00 2.78
1853 1932 6.272318 GTCTCTGACTTGTCCTCATATTCTG 58.728 44.000 0.00 0.00 0.00 3.02
1993 2091 2.093500 CCGAGGGAAGTCACATGATGAA 60.093 50.000 0.00 0.00 39.72 2.57
1997 2098 1.348064 AACCGAGGGAAGTCACATGA 58.652 50.000 0.00 0.00 0.00 3.07
2193 2323 4.243793 TCTCCTACCTTCTCCTCTTGAG 57.756 50.000 0.00 0.00 42.90 3.02
2194 2324 4.676799 TTCTCCTACCTTCTCCTCTTGA 57.323 45.455 0.00 0.00 0.00 3.02
2196 2326 4.224147 GCTTTTCTCCTACCTTCTCCTCTT 59.776 45.833 0.00 0.00 0.00 2.85
2197 2327 3.772572 GCTTTTCTCCTACCTTCTCCTCT 59.227 47.826 0.00 0.00 0.00 3.69
2198 2328 3.772572 AGCTTTTCTCCTACCTTCTCCTC 59.227 47.826 0.00 0.00 0.00 3.71
2199 2329 3.772572 GAGCTTTTCTCCTACCTTCTCCT 59.227 47.826 0.00 0.00 35.77 3.69
2200 2330 3.515901 TGAGCTTTTCTCCTACCTTCTCC 59.484 47.826 0.00 0.00 41.18 3.71
2201 2331 4.021016 TGTGAGCTTTTCTCCTACCTTCTC 60.021 45.833 0.00 0.00 41.18 2.87
2202 2332 3.904339 TGTGAGCTTTTCTCCTACCTTCT 59.096 43.478 0.00 0.00 41.18 2.85
2203 2333 4.273148 TGTGAGCTTTTCTCCTACCTTC 57.727 45.455 0.00 0.00 41.18 3.46
2204 2334 4.917906 ATGTGAGCTTTTCTCCTACCTT 57.082 40.909 0.00 0.00 41.18 3.50
2205 2335 4.777896 TGTATGTGAGCTTTTCTCCTACCT 59.222 41.667 0.00 0.00 41.18 3.08
2206 2336 5.086104 TGTATGTGAGCTTTTCTCCTACC 57.914 43.478 0.00 0.00 41.18 3.18
2207 2337 7.334421 TCATTTGTATGTGAGCTTTTCTCCTAC 59.666 37.037 0.00 0.00 41.18 3.18
2208 2338 7.394016 TCATTTGTATGTGAGCTTTTCTCCTA 58.606 34.615 0.00 0.00 41.18 2.94
2209 2339 6.240894 TCATTTGTATGTGAGCTTTTCTCCT 58.759 36.000 0.00 0.00 41.18 3.69
2210 2340 6.500684 TCATTTGTATGTGAGCTTTTCTCC 57.499 37.500 0.00 0.00 41.18 3.71
2221 2351 9.338291 GCAAATATGATAGCTCATTTGTATGTG 57.662 33.333 14.83 5.28 42.23 3.21
2222 2352 9.293404 AGCAAATATGATAGCTCATTTGTATGT 57.707 29.630 14.83 1.86 42.23 2.29
2226 2356 8.571336 GGTTAGCAAATATGATAGCTCATTTGT 58.429 33.333 14.83 7.99 42.23 2.83
2227 2357 8.025445 GGGTTAGCAAATATGATAGCTCATTTG 58.975 37.037 11.25 11.25 42.23 2.32
2228 2358 7.946776 AGGGTTAGCAAATATGATAGCTCATTT 59.053 33.333 0.00 0.00 42.23 2.32
2229 2359 7.465116 AGGGTTAGCAAATATGATAGCTCATT 58.535 34.615 0.00 0.00 42.23 2.57
2230 2360 7.025520 AGGGTTAGCAAATATGATAGCTCAT 57.974 36.000 0.00 0.00 44.39 2.90
2231 2361 6.439636 AGGGTTAGCAAATATGATAGCTCA 57.560 37.500 0.00 0.00 32.19 4.26
2232 2362 7.841956 TCTAGGGTTAGCAAATATGATAGCTC 58.158 38.462 0.00 0.00 38.47 4.09
2233 2363 7.798710 TCTAGGGTTAGCAAATATGATAGCT 57.201 36.000 0.00 0.00 40.92 3.32
2234 2364 8.848474 TTTCTAGGGTTAGCAAATATGATAGC 57.152 34.615 0.00 0.00 0.00 2.97
2235 2365 9.442047 CCTTTCTAGGGTTAGCAAATATGATAG 57.558 37.037 0.00 0.00 37.94 2.08
2236 2366 9.166222 TCCTTTCTAGGGTTAGCAAATATGATA 57.834 33.333 0.00 0.00 42.26 2.15
2237 2367 8.045720 TCCTTTCTAGGGTTAGCAAATATGAT 57.954 34.615 0.00 0.00 42.26 2.45
2238 2368 7.420214 CCTCCTTTCTAGGGTTAGCAAATATGA 60.420 40.741 0.00 0.00 42.26 2.15
2239 2369 6.712547 CCTCCTTTCTAGGGTTAGCAAATATG 59.287 42.308 0.00 0.00 42.26 1.78
2240 2370 6.390165 ACCTCCTTTCTAGGGTTAGCAAATAT 59.610 38.462 0.00 0.00 42.26 1.28
2241 2371 5.729718 ACCTCCTTTCTAGGGTTAGCAAATA 59.270 40.000 0.00 0.00 42.26 1.40
2242 2372 4.540502 ACCTCCTTTCTAGGGTTAGCAAAT 59.459 41.667 0.00 0.00 42.26 2.32
2243 2373 3.914435 ACCTCCTTTCTAGGGTTAGCAAA 59.086 43.478 0.00 0.00 42.26 3.68
2244 2374 3.263425 CACCTCCTTTCTAGGGTTAGCAA 59.737 47.826 0.00 0.00 42.26 3.91
2245 2375 2.838202 CACCTCCTTTCTAGGGTTAGCA 59.162 50.000 0.00 0.00 42.26 3.49
2246 2376 2.170817 CCACCTCCTTTCTAGGGTTAGC 59.829 54.545 0.00 0.00 42.26 3.09
2247 2377 3.707102 CTCCACCTCCTTTCTAGGGTTAG 59.293 52.174 0.00 0.00 42.26 2.34
2248 2378 3.568109 CCTCCACCTCCTTTCTAGGGTTA 60.568 52.174 0.00 0.00 42.26 2.85
2249 2379 2.552367 CTCCACCTCCTTTCTAGGGTT 58.448 52.381 0.00 0.00 42.26 4.11
2250 2380 1.273896 CCTCCACCTCCTTTCTAGGGT 60.274 57.143 0.00 0.00 42.26 4.34
2251 2381 1.273896 ACCTCCACCTCCTTTCTAGGG 60.274 57.143 0.00 0.00 42.26 3.53
2252 2382 1.834263 CACCTCCACCTCCTTTCTAGG 59.166 57.143 0.00 0.00 43.46 3.02
2253 2383 1.834263 CCACCTCCACCTCCTTTCTAG 59.166 57.143 0.00 0.00 0.00 2.43
2254 2384 1.151413 ACCACCTCCACCTCCTTTCTA 59.849 52.381 0.00 0.00 0.00 2.10
2255 2385 0.104409 ACCACCTCCACCTCCTTTCT 60.104 55.000 0.00 0.00 0.00 2.52
2256 2386 0.325272 GACCACCTCCACCTCCTTTC 59.675 60.000 0.00 0.00 0.00 2.62
2257 2387 0.104409 AGACCACCTCCACCTCCTTT 60.104 55.000 0.00 0.00 0.00 3.11
2258 2388 0.790993 TAGACCACCTCCACCTCCTT 59.209 55.000 0.00 0.00 0.00 3.36
2259 2389 1.019650 ATAGACCACCTCCACCTCCT 58.980 55.000 0.00 0.00 0.00 3.69
2260 2390 1.880941 AATAGACCACCTCCACCTCC 58.119 55.000 0.00 0.00 0.00 4.30
2261 2391 5.839606 ACTATAAATAGACCACCTCCACCTC 59.160 44.000 4.02 0.00 34.50 3.85
2262 2392 5.789535 ACTATAAATAGACCACCTCCACCT 58.210 41.667 4.02 0.00 34.50 4.00
2263 2393 5.839606 AGACTATAAATAGACCACCTCCACC 59.160 44.000 4.02 0.00 34.50 4.61
2264 2394 6.980416 AGACTATAAATAGACCACCTCCAC 57.020 41.667 4.02 0.00 34.50 4.02
2265 2395 7.232941 GCTTAGACTATAAATAGACCACCTCCA 59.767 40.741 4.02 0.00 34.50 3.86
2266 2396 7.575343 CGCTTAGACTATAAATAGACCACCTCC 60.575 44.444 4.02 0.00 34.50 4.30
2267 2397 7.306953 CGCTTAGACTATAAATAGACCACCTC 58.693 42.308 4.02 0.00 34.50 3.85
2268 2398 6.208994 CCGCTTAGACTATAAATAGACCACCT 59.791 42.308 4.02 0.00 34.50 4.00
2269 2399 6.015603 ACCGCTTAGACTATAAATAGACCACC 60.016 42.308 4.02 0.00 34.50 4.61
2270 2400 6.979465 ACCGCTTAGACTATAAATAGACCAC 58.021 40.000 4.02 0.00 34.50 4.16
2271 2401 7.592885 AACCGCTTAGACTATAAATAGACCA 57.407 36.000 4.02 0.00 34.50 4.02
2272 2402 7.754475 GCTAACCGCTTAGACTATAAATAGACC 59.246 40.741 1.57 0.00 32.29 3.85
2273 2403 8.295288 TGCTAACCGCTTAGACTATAAATAGAC 58.705 37.037 1.57 0.00 40.11 2.59
2274 2404 8.400184 TGCTAACCGCTTAGACTATAAATAGA 57.600 34.615 1.57 0.00 40.11 1.98
2275 2405 9.640963 AATGCTAACCGCTTAGACTATAAATAG 57.359 33.333 1.57 0.00 40.11 1.73
2276 2406 9.419297 CAATGCTAACCGCTTAGACTATAAATA 57.581 33.333 1.57 0.00 40.11 1.40
2277 2407 7.387948 CCAATGCTAACCGCTTAGACTATAAAT 59.612 37.037 1.57 0.00 40.11 1.40
2278 2408 6.704493 CCAATGCTAACCGCTTAGACTATAAA 59.296 38.462 1.57 0.00 40.11 1.40
2279 2409 6.183360 ACCAATGCTAACCGCTTAGACTATAA 60.183 38.462 1.57 0.00 40.11 0.98
2280 2410 5.303589 ACCAATGCTAACCGCTTAGACTATA 59.696 40.000 1.57 0.00 40.11 1.31
2281 2411 4.101119 ACCAATGCTAACCGCTTAGACTAT 59.899 41.667 1.57 0.00 40.11 2.12
2282 2412 3.449737 ACCAATGCTAACCGCTTAGACTA 59.550 43.478 1.57 0.00 40.11 2.59
2283 2413 2.236395 ACCAATGCTAACCGCTTAGACT 59.764 45.455 1.57 0.00 40.11 3.24
2284 2414 2.629051 ACCAATGCTAACCGCTTAGAC 58.371 47.619 1.57 0.00 40.11 2.59
2285 2415 3.343941 AACCAATGCTAACCGCTTAGA 57.656 42.857 1.57 0.00 40.11 2.10
2286 2416 4.495844 GCTAAACCAATGCTAACCGCTTAG 60.496 45.833 0.00 0.00 40.11 2.18
2287 2417 3.375922 GCTAAACCAATGCTAACCGCTTA 59.624 43.478 0.00 0.00 40.11 3.09
2288 2418 2.163613 GCTAAACCAATGCTAACCGCTT 59.836 45.455 0.00 0.00 40.11 4.68
2289 2419 1.743394 GCTAAACCAATGCTAACCGCT 59.257 47.619 0.00 0.00 40.11 5.52
2290 2420 1.743394 AGCTAAACCAATGCTAACCGC 59.257 47.619 0.00 0.00 35.05 5.68
2291 2421 3.006940 TGAGCTAAACCAATGCTAACCG 58.993 45.455 0.00 0.00 37.16 4.44
2292 2422 5.823045 AGTATGAGCTAAACCAATGCTAACC 59.177 40.000 0.00 0.00 37.16 2.85
2293 2423 6.927294 AGTATGAGCTAAACCAATGCTAAC 57.073 37.500 0.00 0.00 37.16 2.34
2294 2424 7.109501 TCAAGTATGAGCTAAACCAATGCTAA 58.890 34.615 0.00 0.00 37.16 3.09
2295 2425 6.649155 TCAAGTATGAGCTAAACCAATGCTA 58.351 36.000 0.00 0.00 37.16 3.49
2296 2426 5.500234 TCAAGTATGAGCTAAACCAATGCT 58.500 37.500 0.00 0.00 40.02 3.79
2297 2427 5.814783 CTCAAGTATGAGCTAAACCAATGC 58.185 41.667 0.00 0.00 46.11 3.56
2308 2438 6.959844 AGCAAAGCTCTATCTCAAGTATGAGC 60.960 42.308 0.00 0.00 43.55 4.26
2309 2439 6.514947 AGCAAAGCTCTATCTCAAGTATGAG 58.485 40.000 0.00 0.00 44.55 2.90
2310 2440 6.477053 AGCAAAGCTCTATCTCAAGTATGA 57.523 37.500 0.00 0.00 30.62 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.