Multiple sequence alignment - TraesCS1A01G136500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G136500 chr1A 100.000 4083 0 0 995 5077 217613638 217609556 0.000000e+00 7540.0
1 TraesCS1A01G136500 chr1A 100.000 497 0 0 1 497 217614632 217614136 0.000000e+00 918.0
2 TraesCS1A01G136500 chr1A 91.028 457 34 5 4625 5077 308577827 308577374 1.210000e-170 610.0
3 TraesCS1A01G136500 chr1A 87.282 401 32 5 1 401 6020951 6021332 1.680000e-119 440.0
4 TraesCS1A01G136500 chr1A 100.000 36 0 0 4310 4345 139138129 139138164 3.280000e-07 67.6
5 TraesCS1A01G136500 chr1D 98.817 3298 36 3 1015 4309 168487343 168484046 0.000000e+00 5871.0
6 TraesCS1A01G136500 chr1D 86.856 388 32 6 10 396 78118142 78117773 2.830000e-112 416.0
7 TraesCS1A01G136500 chr1D 100.000 47 0 0 402 448 168487904 168487858 2.520000e-13 87.9
8 TraesCS1A01G136500 chr1B 98.539 2396 29 2 1916 4309 239777708 239780099 0.000000e+00 4226.0
9 TraesCS1A01G136500 chr1B 98.096 893 16 1 995 1886 239776817 239777709 0.000000e+00 1554.0
10 TraesCS1A01G136500 chr1B 91.503 459 29 7 4625 5077 572152699 572152245 1.550000e-174 623.0
11 TraesCS1A01G136500 chr1B 97.872 47 1 0 402 448 239776590 239776636 1.170000e-11 82.4
12 TraesCS1A01G136500 chr2D 93.013 458 24 6 4625 5077 357975495 357975041 0.000000e+00 662.0
13 TraesCS1A01G136500 chr2D 88.101 395 29 4 1 395 365796358 365796734 2.160000e-123 453.0
14 TraesCS1A01G136500 chr2D 81.395 559 78 14 4525 5071 576965198 576965742 2.810000e-117 433.0
15 TraesCS1A01G136500 chr2D 87.023 393 33 4 1 393 542709805 542710179 1.310000e-115 427.0
16 TraesCS1A01G136500 chr7A 92.494 453 29 3 4622 5070 198691327 198691778 1.190000e-180 643.0
17 TraesCS1A01G136500 chr7A 80.000 140 12 10 4526 4652 232286682 232286546 7.000000e-14 89.8
18 TraesCS1A01G136500 chr5A 87.500 584 40 16 4524 5077 54467384 54467964 1.190000e-180 643.0
19 TraesCS1A01G136500 chr5A 87.121 396 31 7 1 395 120000783 120001159 1.010000e-116 431.0
20 TraesCS1A01G136500 chr3B 91.466 457 31 4 4625 5077 2503932 2503480 5.580000e-174 621.0
21 TraesCS1A01G136500 chr3B 90.749 454 31 7 4630 5077 17367252 17366804 3.380000e-166 595.0
22 TraesCS1A01G136500 chr3B 87.912 182 18 3 4304 4483 564019713 564019534 1.430000e-50 211.0
23 TraesCS1A01G136500 chr3B 88.202 178 19 2 4308 4483 776188685 776188508 1.430000e-50 211.0
24 TraesCS1A01G136500 chr5B 91.087 460 36 3 4622 5077 569539698 569540156 7.220000e-173 617.0
25 TraesCS1A01G136500 chr3A 87.750 400 28 7 1 399 15426202 15426581 1.000000e-121 448.0
26 TraesCS1A01G136500 chr3A 87.848 395 29 7 1 395 486036279 486036654 3.610000e-121 446.0
27 TraesCS1A01G136500 chr3A 87.374 396 31 6 1 395 584760163 584759786 2.170000e-118 436.0
28 TraesCS1A01G136500 chr3A 87.342 395 29 8 1 395 623993709 623993336 2.810000e-117 433.0
29 TraesCS1A01G136500 chr3A 85.787 394 36 9 1 393 746579540 746579914 2.850000e-107 399.0
30 TraesCS1A01G136500 chr5D 87.339 387 28 7 10 395 537320991 537320625 1.690000e-114 424.0
31 TraesCS1A01G136500 chr2A 86.768 393 34 4 1 393 755811345 755810971 6.080000e-114 422.0
32 TraesCS1A01G136500 chr2A 85.894 397 36 4 1 395 702166020 702165642 6.120000e-109 405.0
33 TraesCS1A01G136500 chr2A 85.751 393 29 9 1 393 741416619 741416254 1.710000e-104 390.0
34 TraesCS1A01G136500 chr3D 86.398 397 35 6 1 397 566433212 566433589 2.830000e-112 416.0
35 TraesCS1A01G136500 chr3D 86.528 386 34 5 10 395 539551711 539551344 4.730000e-110 409.0
36 TraesCS1A01G136500 chr7D 86.563 387 34 5 1 387 565436468 565436836 1.320000e-110 411.0
37 TraesCS1A01G136500 chr6A 84.343 396 42 7 1 395 78005774 78005398 2.230000e-98 370.0
38 TraesCS1A01G136500 chr2B 89.266 177 16 2 4310 4483 598956379 598956203 8.560000e-53 219.0
39 TraesCS1A01G136500 chr6D 88.398 181 14 5 4310 4483 419592584 419592764 1.430000e-50 211.0
40 TraesCS1A01G136500 chr6B 90.066 151 12 2 4336 4483 490332862 490332712 5.190000e-45 193.0
41 TraesCS1A01G136500 chr6B 90.476 84 7 1 4401 4483 490332863 490332946 5.370000e-20 110.0
42 TraesCS1A01G136500 chrUn 91.736 121 5 2 4311 4426 470912863 470912743 4.070000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G136500 chr1A 217609556 217614632 5076 True 4229.000000 7540 100.0000 1 5077 2 chr1A.!!$R2 5076
1 TraesCS1A01G136500 chr1D 168484046 168487904 3858 True 2979.450000 5871 99.4085 402 4309 2 chr1D.!!$R2 3907
2 TraesCS1A01G136500 chr1B 239776590 239780099 3509 False 1954.133333 4226 98.1690 402 4309 3 chr1B.!!$F1 3907
3 TraesCS1A01G136500 chr2D 576965198 576965742 544 False 433.000000 433 81.3950 4525 5071 1 chr2D.!!$F3 546
4 TraesCS1A01G136500 chr5A 54467384 54467964 580 False 643.000000 643 87.5000 4524 5077 1 chr5A.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 387 0.036765 TTAAGATGGCGCGGTGAAGT 60.037 50.000 8.83 0.0 0.00 3.01 F
475 508 0.614979 AGCGAGGTGGTCCACTGTAT 60.615 55.000 21.40 5.7 34.40 2.29 F
476 509 1.108776 GCGAGGTGGTCCACTGTATA 58.891 55.000 21.40 0.0 34.40 1.47 F
1269 1302 1.132881 TCCCAACCTTTCCAGGCAAAT 60.133 47.619 0.00 0.0 45.56 2.32 F
1630 1663 1.954382 GACCTTCTTTCTTGCCGGTTT 59.046 47.619 1.90 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1302 1.289160 CTTGGAGATTGGGTCCAGGA 58.711 55.000 0.00 0.0 45.00 3.86 R
2228 2262 3.053917 AGGTAAAAATCACGGCCTATGGT 60.054 43.478 0.00 0.0 0.00 3.55 R
3091 3126 4.770795 ACTGATAAAGAACAGCGCCTAAT 58.229 39.130 2.29 0.0 37.61 1.73 R
3470 3505 4.446719 GCAAAGCAAAAGGTGATTCTCAAG 59.553 41.667 0.00 0.0 33.79 3.02 R
4164 4202 6.994221 AGGGGATGTTTATCTACTGATTACG 58.006 40.000 0.00 0.0 34.32 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.146182 GGATGCCAGATCGAGCCT 58.854 61.111 0.00 0.00 0.00 4.58
18 19 1.005156 GGATGCCAGATCGAGCCTC 60.005 63.158 0.00 7.05 0.00 4.70
19 20 1.005156 GATGCCAGATCGAGCCTCC 60.005 63.158 0.00 0.00 0.00 4.30
20 21 1.459158 ATGCCAGATCGAGCCTCCT 60.459 57.895 0.00 0.00 0.00 3.69
21 22 1.470996 ATGCCAGATCGAGCCTCCTC 61.471 60.000 0.00 0.00 34.66 3.71
22 23 2.866726 GCCAGATCGAGCCTCCTCC 61.867 68.421 0.00 0.00 34.49 4.30
23 24 1.456518 CCAGATCGAGCCTCCTCCA 60.457 63.158 0.00 0.00 34.49 3.86
24 25 1.739049 CAGATCGAGCCTCCTCCAC 59.261 63.158 0.00 0.00 34.49 4.02
25 26 1.039785 CAGATCGAGCCTCCTCCACA 61.040 60.000 0.00 0.00 34.49 4.17
26 27 0.754957 AGATCGAGCCTCCTCCACAG 60.755 60.000 0.00 0.00 34.49 3.66
27 28 0.753479 GATCGAGCCTCCTCCACAGA 60.753 60.000 0.00 0.00 34.49 3.41
28 29 0.105760 ATCGAGCCTCCTCCACAGAT 60.106 55.000 0.00 0.00 34.49 2.90
29 30 0.753479 TCGAGCCTCCTCCACAGATC 60.753 60.000 0.00 0.00 34.49 2.75
30 31 1.039785 CGAGCCTCCTCCACAGATCA 61.040 60.000 0.00 0.00 34.49 2.92
31 32 1.198713 GAGCCTCCTCCACAGATCAA 58.801 55.000 0.00 0.00 31.68 2.57
32 33 0.908198 AGCCTCCTCCACAGATCAAC 59.092 55.000 0.00 0.00 0.00 3.18
33 34 0.615331 GCCTCCTCCACAGATCAACA 59.385 55.000 0.00 0.00 0.00 3.33
34 35 1.003580 GCCTCCTCCACAGATCAACAA 59.996 52.381 0.00 0.00 0.00 2.83
35 36 2.356535 GCCTCCTCCACAGATCAACAAT 60.357 50.000 0.00 0.00 0.00 2.71
36 37 3.276857 CCTCCTCCACAGATCAACAATG 58.723 50.000 0.00 0.00 0.00 2.82
37 38 3.054875 CCTCCTCCACAGATCAACAATGA 60.055 47.826 0.00 0.00 40.57 2.57
38 39 4.190001 CTCCTCCACAGATCAACAATGAG 58.810 47.826 0.00 0.00 39.39 2.90
39 40 3.584406 TCCTCCACAGATCAACAATGAGT 59.416 43.478 0.00 0.00 39.39 3.41
40 41 4.777366 TCCTCCACAGATCAACAATGAGTA 59.223 41.667 0.00 0.00 39.39 2.59
41 42 4.872691 CCTCCACAGATCAACAATGAGTAC 59.127 45.833 0.00 0.00 39.39 2.73
42 43 5.482006 CTCCACAGATCAACAATGAGTACA 58.518 41.667 0.00 0.00 39.39 2.90
43 44 6.053632 TCCACAGATCAACAATGAGTACAT 57.946 37.500 0.00 0.00 39.39 2.29
44 45 6.108687 TCCACAGATCAACAATGAGTACATC 58.891 40.000 0.00 0.00 39.39 3.06
45 46 5.006068 CCACAGATCAACAATGAGTACATCG 59.994 44.000 0.00 0.00 39.39 3.84
46 47 5.807011 CACAGATCAACAATGAGTACATCGA 59.193 40.000 0.00 0.00 39.39 3.59
47 48 6.020041 CACAGATCAACAATGAGTACATCGAG 60.020 42.308 0.00 0.00 39.39 4.04
48 49 6.127619 ACAGATCAACAATGAGTACATCGAGA 60.128 38.462 0.00 0.00 39.39 4.04
49 50 6.753744 CAGATCAACAATGAGTACATCGAGAA 59.246 38.462 0.00 0.00 39.39 2.87
50 51 6.977502 AGATCAACAATGAGTACATCGAGAAG 59.022 38.462 0.00 0.00 39.39 2.85
51 52 6.267496 TCAACAATGAGTACATCGAGAAGA 57.733 37.500 0.00 0.00 35.50 2.87
52 53 6.093404 TCAACAATGAGTACATCGAGAAGAC 58.907 40.000 0.00 0.00 35.50 3.01
53 54 5.000012 ACAATGAGTACATCGAGAAGACC 58.000 43.478 0.00 0.00 35.50 3.85
54 55 4.142138 ACAATGAGTACATCGAGAAGACCC 60.142 45.833 0.00 0.00 35.50 4.46
55 56 3.367646 TGAGTACATCGAGAAGACCCT 57.632 47.619 0.00 0.00 0.00 4.34
56 57 4.498894 TGAGTACATCGAGAAGACCCTA 57.501 45.455 0.00 0.00 0.00 3.53
57 58 4.851843 TGAGTACATCGAGAAGACCCTAA 58.148 43.478 0.00 0.00 0.00 2.69
58 59 4.639310 TGAGTACATCGAGAAGACCCTAAC 59.361 45.833 0.00 0.00 0.00 2.34
59 60 3.952967 AGTACATCGAGAAGACCCTAACC 59.047 47.826 0.00 0.00 0.00 2.85
60 61 2.108970 ACATCGAGAAGACCCTAACCC 58.891 52.381 0.00 0.00 0.00 4.11
61 62 2.108168 CATCGAGAAGACCCTAACCCA 58.892 52.381 0.00 0.00 0.00 4.51
62 63 2.314071 TCGAGAAGACCCTAACCCAA 57.686 50.000 0.00 0.00 0.00 4.12
63 64 1.897802 TCGAGAAGACCCTAACCCAAC 59.102 52.381 0.00 0.00 0.00 3.77
64 65 1.900486 CGAGAAGACCCTAACCCAACT 59.100 52.381 0.00 0.00 0.00 3.16
65 66 2.094130 CGAGAAGACCCTAACCCAACTC 60.094 54.545 0.00 0.00 0.00 3.01
66 67 2.904434 GAGAAGACCCTAACCCAACTCA 59.096 50.000 0.00 0.00 0.00 3.41
67 68 3.323775 AGAAGACCCTAACCCAACTCAA 58.676 45.455 0.00 0.00 0.00 3.02
68 69 3.328050 AGAAGACCCTAACCCAACTCAAG 59.672 47.826 0.00 0.00 0.00 3.02
69 70 1.985895 AGACCCTAACCCAACTCAAGG 59.014 52.381 0.00 0.00 0.00 3.61
75 76 2.036256 CCCAACTCAAGGGGGCAG 59.964 66.667 0.00 0.00 42.90 4.85
76 77 2.845345 CCCAACTCAAGGGGGCAGT 61.845 63.158 0.00 0.00 42.90 4.40
77 78 1.153756 CCAACTCAAGGGGGCAGTT 59.846 57.895 0.00 0.00 0.00 3.16
78 79 0.404040 CCAACTCAAGGGGGCAGTTA 59.596 55.000 0.00 0.00 0.00 2.24
79 80 1.005924 CCAACTCAAGGGGGCAGTTAT 59.994 52.381 0.00 0.00 0.00 1.89
80 81 2.094675 CAACTCAAGGGGGCAGTTATG 58.905 52.381 0.00 0.00 0.00 1.90
81 82 0.625849 ACTCAAGGGGGCAGTTATGG 59.374 55.000 0.00 0.00 0.00 2.74
82 83 0.918983 CTCAAGGGGGCAGTTATGGA 59.081 55.000 0.00 0.00 0.00 3.41
83 84 1.284785 CTCAAGGGGGCAGTTATGGAA 59.715 52.381 0.00 0.00 0.00 3.53
84 85 1.284785 TCAAGGGGGCAGTTATGGAAG 59.715 52.381 0.00 0.00 0.00 3.46
85 86 1.005924 CAAGGGGGCAGTTATGGAAGT 59.994 52.381 0.00 0.00 0.00 3.01
86 87 1.382914 AGGGGGCAGTTATGGAAGTT 58.617 50.000 0.00 0.00 0.00 2.66
87 88 1.005924 AGGGGGCAGTTATGGAAGTTG 59.994 52.381 0.00 0.00 0.00 3.16
88 89 1.474330 GGGGCAGTTATGGAAGTTGG 58.526 55.000 0.00 0.00 0.00 3.77
89 90 0.817654 GGGCAGTTATGGAAGTTGGC 59.182 55.000 0.00 0.00 0.00 4.52
90 91 1.616994 GGGCAGTTATGGAAGTTGGCT 60.617 52.381 0.00 0.00 0.00 4.75
91 92 2.356741 GGGCAGTTATGGAAGTTGGCTA 60.357 50.000 0.00 0.00 0.00 3.93
92 93 3.555966 GGCAGTTATGGAAGTTGGCTAT 58.444 45.455 0.00 0.00 0.00 2.97
93 94 3.565902 GGCAGTTATGGAAGTTGGCTATC 59.434 47.826 0.00 0.00 0.00 2.08
94 95 4.455606 GCAGTTATGGAAGTTGGCTATCT 58.544 43.478 0.00 0.00 0.00 1.98
95 96 4.884164 GCAGTTATGGAAGTTGGCTATCTT 59.116 41.667 0.00 0.00 0.00 2.40
96 97 5.008118 GCAGTTATGGAAGTTGGCTATCTTC 59.992 44.000 11.37 11.37 39.21 2.87
97 98 6.352516 CAGTTATGGAAGTTGGCTATCTTCT 58.647 40.000 17.31 4.87 39.67 2.85
98 99 7.500992 CAGTTATGGAAGTTGGCTATCTTCTA 58.499 38.462 17.31 13.33 39.67 2.10
99 100 7.987458 CAGTTATGGAAGTTGGCTATCTTCTAA 59.013 37.037 17.31 8.80 39.67 2.10
100 101 8.548877 AGTTATGGAAGTTGGCTATCTTCTAAA 58.451 33.333 17.31 8.89 39.67 1.85
101 102 9.174166 GTTATGGAAGTTGGCTATCTTCTAAAA 57.826 33.333 17.31 8.62 39.67 1.52
102 103 9.920946 TTATGGAAGTTGGCTATCTTCTAAAAT 57.079 29.630 17.31 10.43 39.67 1.82
103 104 7.630242 TGGAAGTTGGCTATCTTCTAAAATG 57.370 36.000 17.31 0.00 39.67 2.32
104 105 7.175104 TGGAAGTTGGCTATCTTCTAAAATGT 58.825 34.615 17.31 0.00 39.67 2.71
105 106 8.325787 TGGAAGTTGGCTATCTTCTAAAATGTA 58.674 33.333 17.31 0.00 39.67 2.29
106 107 9.343539 GGAAGTTGGCTATCTTCTAAAATGTAT 57.656 33.333 17.31 0.00 39.67 2.29
112 113 9.905713 TGGCTATCTTCTAAAATGTATTCTTGT 57.094 29.630 0.00 0.00 0.00 3.16
149 150 7.633193 TTTTTGGTCTTGCTTTACTAGTCAA 57.367 32.000 0.00 0.00 0.00 3.18
150 151 7.633193 TTTTGGTCTTGCTTTACTAGTCAAA 57.367 32.000 0.00 0.00 0.00 2.69
151 152 7.633193 TTTGGTCTTGCTTTACTAGTCAAAA 57.367 32.000 0.00 0.00 30.31 2.44
152 153 7.817418 TTGGTCTTGCTTTACTAGTCAAAAT 57.183 32.000 0.00 0.00 0.00 1.82
153 154 8.911918 TTGGTCTTGCTTTACTAGTCAAAATA 57.088 30.769 0.00 0.00 0.00 1.40
154 155 9.515226 TTGGTCTTGCTTTACTAGTCAAAATAT 57.485 29.630 0.00 0.00 0.00 1.28
155 156 8.946085 TGGTCTTGCTTTACTAGTCAAAATATG 58.054 33.333 0.00 0.00 0.00 1.78
156 157 9.162764 GGTCTTGCTTTACTAGTCAAAATATGA 57.837 33.333 0.00 0.00 35.05 2.15
227 228 1.799403 TGCAAAGAAAAATGCATGCGG 59.201 42.857 14.09 0.00 46.87 5.69
228 229 2.067766 GCAAAGAAAAATGCATGCGGA 58.932 42.857 14.09 0.00 42.12 5.54
229 230 2.159801 GCAAAGAAAAATGCATGCGGAC 60.160 45.455 14.09 1.31 42.12 4.79
230 231 3.058450 CAAAGAAAAATGCATGCGGACA 58.942 40.909 14.09 0.00 0.00 4.02
231 232 2.642139 AGAAAAATGCATGCGGACAG 57.358 45.000 14.09 0.00 0.00 3.51
232 233 1.203052 AGAAAAATGCATGCGGACAGG 59.797 47.619 14.09 0.00 0.00 4.00
233 234 1.202114 GAAAAATGCATGCGGACAGGA 59.798 47.619 14.09 0.00 0.00 3.86
234 235 1.477553 AAAATGCATGCGGACAGGAT 58.522 45.000 14.09 0.00 0.00 3.24
238 239 3.417601 CATGCGGACAGGATGCAG 58.582 61.111 0.00 0.00 41.68 4.41
239 240 2.515523 ATGCGGACAGGATGCAGC 60.516 61.111 0.00 0.00 42.65 5.25
240 241 4.783621 TGCGGACAGGATGCAGCC 62.784 66.667 14.72 14.72 42.53 4.85
243 244 4.864334 GGACAGGATGCAGCCGGG 62.864 72.222 24.88 18.82 42.53 5.73
244 245 4.864334 GACAGGATGCAGCCGGGG 62.864 72.222 24.88 16.32 42.53 5.73
246 247 4.864334 CAGGATGCAGCCGGGGAC 62.864 72.222 16.75 0.00 0.00 4.46
248 249 4.864334 GGATGCAGCCGGGGACAG 62.864 72.222 4.62 0.00 0.00 3.51
249 250 4.864334 GATGCAGCCGGGGACAGG 62.864 72.222 2.18 0.00 0.00 4.00
252 253 4.864334 GCAGCCGGGGACAGGATG 62.864 72.222 2.18 0.00 47.00 3.51
253 254 4.864334 CAGCCGGGGACAGGATGC 62.864 72.222 2.18 0.00 42.53 3.91
266 267 4.856801 GATGCGGCCGGGATGTGT 62.857 66.667 29.38 0.00 0.00 3.72
267 268 4.856801 ATGCGGCCGGGATGTGTC 62.857 66.667 29.38 7.83 0.00 3.67
277 278 4.505217 GATGTGTCCGCGCGCTTG 62.505 66.667 30.48 20.05 0.00 4.01
300 301 3.770040 CGGTCACCGCATCCCAGA 61.770 66.667 1.50 0.00 41.17 3.86
301 302 2.668632 GGTCACCGCATCCCAGAA 59.331 61.111 0.00 0.00 0.00 3.02
302 303 1.745489 GGTCACCGCATCCCAGAAC 60.745 63.158 0.00 0.00 0.00 3.01
303 304 1.003839 GTCACCGCATCCCAGAACA 60.004 57.895 0.00 0.00 0.00 3.18
304 305 1.003839 TCACCGCATCCCAGAACAC 60.004 57.895 0.00 0.00 0.00 3.32
305 306 2.047274 ACCGCATCCCAGAACACG 60.047 61.111 0.00 0.00 0.00 4.49
306 307 3.499737 CCGCATCCCAGAACACGC 61.500 66.667 0.00 0.00 0.00 5.34
307 308 3.499737 CGCATCCCAGAACACGCC 61.500 66.667 0.00 0.00 0.00 5.68
308 309 3.134127 GCATCCCAGAACACGCCC 61.134 66.667 0.00 0.00 0.00 6.13
309 310 2.819595 CATCCCAGAACACGCCCG 60.820 66.667 0.00 0.00 0.00 6.13
310 311 4.096003 ATCCCAGAACACGCCCGG 62.096 66.667 0.00 0.00 0.00 5.73
313 314 4.308458 CCAGAACACGCCCGGACA 62.308 66.667 0.73 0.00 0.00 4.02
314 315 3.041940 CAGAACACGCCCGGACAC 61.042 66.667 0.73 0.00 0.00 3.67
315 316 4.657824 AGAACACGCCCGGACACG 62.658 66.667 0.73 6.47 40.55 4.49
316 317 4.651008 GAACACGCCCGGACACGA 62.651 66.667 16.67 0.00 44.60 4.35
317 318 3.927163 GAACACGCCCGGACACGAT 62.927 63.158 16.67 3.54 44.60 3.73
318 319 3.524648 AACACGCCCGGACACGATT 62.525 57.895 16.67 8.58 44.60 3.34
319 320 3.186047 CACGCCCGGACACGATTC 61.186 66.667 16.67 0.00 44.60 2.52
320 321 4.446413 ACGCCCGGACACGATTCC 62.446 66.667 16.67 0.00 44.60 3.01
321 322 4.444838 CGCCCGGACACGATTCCA 62.445 66.667 0.73 0.00 44.60 3.53
322 323 2.046700 GCCCGGACACGATTCCAA 60.047 61.111 0.73 0.00 44.60 3.53
323 324 1.673009 GCCCGGACACGATTCCAAA 60.673 57.895 0.73 0.00 44.60 3.28
324 325 1.029947 GCCCGGACACGATTCCAAAT 61.030 55.000 0.73 0.00 44.60 2.32
325 326 1.014352 CCCGGACACGATTCCAAATC 58.986 55.000 0.73 0.00 44.60 2.17
326 327 1.014352 CCGGACACGATTCCAAATCC 58.986 55.000 0.00 0.00 44.60 3.01
327 328 1.014352 CGGACACGATTCCAAATCCC 58.986 55.000 7.65 0.00 44.60 3.85
328 329 1.406887 CGGACACGATTCCAAATCCCT 60.407 52.381 7.65 0.00 44.60 4.20
329 330 2.159014 CGGACACGATTCCAAATCCCTA 60.159 50.000 7.65 0.00 44.60 3.53
330 331 3.203716 GGACACGATTCCAAATCCCTAC 58.796 50.000 0.00 0.00 35.49 3.18
331 332 3.203716 GACACGATTCCAAATCCCTACC 58.796 50.000 0.00 0.00 0.00 3.18
332 333 2.092592 ACACGATTCCAAATCCCTACCC 60.093 50.000 0.00 0.00 0.00 3.69
333 334 2.092646 CACGATTCCAAATCCCTACCCA 60.093 50.000 0.00 0.00 0.00 4.51
334 335 2.578940 ACGATTCCAAATCCCTACCCAA 59.421 45.455 0.00 0.00 0.00 4.12
335 336 3.010808 ACGATTCCAAATCCCTACCCAAA 59.989 43.478 0.00 0.00 0.00 3.28
336 337 3.380320 CGATTCCAAATCCCTACCCAAAC 59.620 47.826 0.00 0.00 0.00 2.93
337 338 2.500392 TCCAAATCCCTACCCAAACG 57.500 50.000 0.00 0.00 0.00 3.60
338 339 1.004979 TCCAAATCCCTACCCAAACGG 59.995 52.381 0.00 0.00 37.81 4.44
339 340 1.004979 CCAAATCCCTACCCAAACGGA 59.995 52.381 0.00 0.00 34.64 4.69
340 341 2.089201 CAAATCCCTACCCAAACGGAC 58.911 52.381 0.00 0.00 34.64 4.79
341 342 1.364269 AATCCCTACCCAAACGGACA 58.636 50.000 0.00 0.00 34.64 4.02
342 343 0.909623 ATCCCTACCCAAACGGACAG 59.090 55.000 0.00 0.00 34.64 3.51
343 344 0.178926 TCCCTACCCAAACGGACAGA 60.179 55.000 0.00 0.00 34.64 3.41
344 345 0.688487 CCCTACCCAAACGGACAGAA 59.312 55.000 0.00 0.00 34.64 3.02
345 346 1.280998 CCCTACCCAAACGGACAGAAT 59.719 52.381 0.00 0.00 34.64 2.40
346 347 2.629051 CCTACCCAAACGGACAGAATC 58.371 52.381 0.00 0.00 34.64 2.52
347 348 2.236395 CCTACCCAAACGGACAGAATCT 59.764 50.000 0.00 0.00 34.64 2.40
348 349 2.185004 ACCCAAACGGACAGAATCTG 57.815 50.000 8.98 8.98 39.92 2.90
349 350 1.271379 ACCCAAACGGACAGAATCTGG 60.271 52.381 15.38 0.00 38.12 3.86
350 351 1.003118 CCCAAACGGACAGAATCTGGA 59.997 52.381 15.38 0.00 38.12 3.86
351 352 2.356125 CCCAAACGGACAGAATCTGGAT 60.356 50.000 15.38 0.00 38.12 3.41
352 353 3.118408 CCCAAACGGACAGAATCTGGATA 60.118 47.826 15.38 0.00 38.12 2.59
353 354 4.513442 CCAAACGGACAGAATCTGGATAA 58.487 43.478 15.38 0.00 38.12 1.75
354 355 4.941263 CCAAACGGACAGAATCTGGATAAA 59.059 41.667 15.38 0.00 38.12 1.40
355 356 5.414454 CCAAACGGACAGAATCTGGATAAAA 59.586 40.000 15.38 0.00 38.12 1.52
356 357 6.314784 CAAACGGACAGAATCTGGATAAAAC 58.685 40.000 15.38 0.00 38.12 2.43
357 358 4.181578 ACGGACAGAATCTGGATAAAACG 58.818 43.478 15.38 9.80 38.12 3.60
358 359 3.555956 CGGACAGAATCTGGATAAAACGG 59.444 47.826 15.38 0.00 35.51 4.44
359 360 4.679639 CGGACAGAATCTGGATAAAACGGA 60.680 45.833 15.38 0.00 35.51 4.69
360 361 4.571176 GGACAGAATCTGGATAAAACGGAC 59.429 45.833 15.38 0.00 35.51 4.79
361 362 5.160607 ACAGAATCTGGATAAAACGGACA 57.839 39.130 15.38 0.00 35.51 4.02
362 363 5.745227 ACAGAATCTGGATAAAACGGACAT 58.255 37.500 15.38 0.00 35.51 3.06
363 364 5.817816 ACAGAATCTGGATAAAACGGACATC 59.182 40.000 15.38 0.00 35.51 3.06
364 365 5.237344 CAGAATCTGGATAAAACGGACATCC 59.763 44.000 1.53 0.00 39.00 3.51
378 379 1.003866 GACATCCGTTTAAGATGGCGC 60.004 52.381 0.00 0.00 44.45 6.53
379 380 0.042188 CATCCGTTTAAGATGGCGCG 60.042 55.000 0.00 0.00 37.96 6.86
380 381 1.157870 ATCCGTTTAAGATGGCGCGG 61.158 55.000 8.83 0.00 40.43 6.46
381 382 2.104253 CCGTTTAAGATGGCGCGGT 61.104 57.895 8.83 0.00 35.11 5.68
382 383 1.060308 CGTTTAAGATGGCGCGGTG 59.940 57.895 8.83 0.00 0.00 4.94
383 384 1.355796 CGTTTAAGATGGCGCGGTGA 61.356 55.000 8.83 0.00 0.00 4.02
384 385 0.800012 GTTTAAGATGGCGCGGTGAA 59.200 50.000 8.83 0.00 0.00 3.18
385 386 1.083489 TTTAAGATGGCGCGGTGAAG 58.917 50.000 8.83 0.00 0.00 3.02
386 387 0.036765 TTAAGATGGCGCGGTGAAGT 60.037 50.000 8.83 0.00 0.00 3.01
387 388 0.036765 TAAGATGGCGCGGTGAAGTT 60.037 50.000 8.83 0.00 0.00 2.66
388 389 1.577328 AAGATGGCGCGGTGAAGTTG 61.577 55.000 8.83 0.00 0.00 3.16
389 390 2.031919 ATGGCGCGGTGAAGTTGA 59.968 55.556 8.83 0.00 0.00 3.18
390 391 2.240612 GATGGCGCGGTGAAGTTGAC 62.241 60.000 8.83 0.00 0.00 3.18
391 392 3.723348 GGCGCGGTGAAGTTGACC 61.723 66.667 8.83 0.66 0.00 4.02
392 393 2.665185 GCGCGGTGAAGTTGACCT 60.665 61.111 8.83 0.00 0.00 3.85
393 394 2.251642 GCGCGGTGAAGTTGACCTT 61.252 57.895 8.83 0.00 35.59 3.50
394 395 0.947180 GCGCGGTGAAGTTGACCTTA 60.947 55.000 8.83 0.00 32.03 2.69
395 396 0.788391 CGCGGTGAAGTTGACCTTAC 59.212 55.000 9.95 0.00 32.03 2.34
396 397 1.604693 CGCGGTGAAGTTGACCTTACT 60.605 52.381 9.95 0.00 32.03 2.24
397 398 2.067013 GCGGTGAAGTTGACCTTACTC 58.933 52.381 9.95 0.00 32.03 2.59
398 399 2.288886 GCGGTGAAGTTGACCTTACTCT 60.289 50.000 9.95 0.00 32.03 3.24
399 400 3.802675 GCGGTGAAGTTGACCTTACTCTT 60.803 47.826 9.95 0.00 32.03 2.85
400 401 4.377897 CGGTGAAGTTGACCTTACTCTTT 58.622 43.478 9.95 0.00 32.03 2.52
466 499 2.032681 GAAGCCAAGCGAGGTGGT 59.967 61.111 0.00 0.00 38.50 4.16
467 500 2.032681 AAGCCAAGCGAGGTGGTC 59.967 61.111 0.00 0.00 38.50 4.02
469 502 4.329545 GCCAAGCGAGGTGGTCCA 62.330 66.667 0.00 0.00 38.50 4.02
471 504 2.743718 CAAGCGAGGTGGTCCACT 59.256 61.111 21.40 7.76 34.40 4.00
472 505 1.669115 CAAGCGAGGTGGTCCACTG 60.669 63.158 21.40 12.54 34.40 3.66
473 506 2.140792 AAGCGAGGTGGTCCACTGT 61.141 57.895 21.40 9.42 34.40 3.55
474 507 0.830444 AAGCGAGGTGGTCCACTGTA 60.830 55.000 21.40 0.00 34.40 2.74
475 508 0.614979 AGCGAGGTGGTCCACTGTAT 60.615 55.000 21.40 5.70 34.40 2.29
476 509 1.108776 GCGAGGTGGTCCACTGTATA 58.891 55.000 21.40 0.00 34.40 1.47
478 511 2.102588 GCGAGGTGGTCCACTGTATAAT 59.897 50.000 21.40 0.00 34.40 1.28
479 512 3.319972 GCGAGGTGGTCCACTGTATAATA 59.680 47.826 21.40 0.00 34.40 0.98
483 516 6.990349 CGAGGTGGTCCACTGTATAATAAAAT 59.010 38.462 21.40 0.00 34.40 1.82
1269 1302 1.132881 TCCCAACCTTTCCAGGCAAAT 60.133 47.619 0.00 0.00 45.56 2.32
1306 1339 5.116180 TCCAAGCATACTTTAACCTCGATG 58.884 41.667 0.00 0.00 32.29 3.84
1313 1346 3.870274 ACTTTAACCTCGATGTAAGGGC 58.130 45.455 7.85 0.00 38.29 5.19
1378 1411 2.617788 CCTGCTGTGTAATTAGGTGGCA 60.618 50.000 0.00 0.00 0.00 4.92
1630 1663 1.954382 GACCTTCTTTCTTGCCGGTTT 59.046 47.619 1.90 0.00 0.00 3.27
1651 1684 5.530519 TTTCAGTGCTCATGATACGAAAC 57.469 39.130 16.56 4.85 0.00 2.78
2228 2262 2.088104 AAGACCTGGCATCGAGGATA 57.912 50.000 0.00 0.00 34.37 2.59
2537 2572 8.233868 TGTGTCCTGATTGTATGTTTTTATTCG 58.766 33.333 0.00 0.00 0.00 3.34
3459 3494 2.488153 GCTTGTACCAACAACCATCCTC 59.512 50.000 0.00 0.00 40.69 3.71
3604 3640 3.791320 ACTTCTACTTGGTCCAGATGGA 58.209 45.455 0.00 0.00 43.08 3.41
4268 4306 8.730680 TGTCTTTTCCTTTTACTGCTTGATATC 58.269 33.333 0.00 0.00 0.00 1.63
4296 4334 7.981225 TGTACCAAGAGTTTAAGAAAGTAACGT 59.019 33.333 0.00 0.00 0.00 3.99
4309 4347 7.809546 AGAAAGTAACGTATAGGTAGTACCC 57.190 40.000 16.05 0.00 39.75 3.69
4310 4348 7.346471 AGAAAGTAACGTATAGGTAGTACCCA 58.654 38.462 16.05 2.22 39.75 4.51
4311 4349 7.834181 AGAAAGTAACGTATAGGTAGTACCCAA 59.166 37.037 16.05 5.07 39.75 4.12
4312 4350 8.539117 AAAGTAACGTATAGGTAGTACCCAAT 57.461 34.615 16.05 12.11 39.75 3.16
4313 4351 9.640952 AAAGTAACGTATAGGTAGTACCCAATA 57.359 33.333 16.05 11.14 39.75 1.90
4314 4352 9.640952 AAGTAACGTATAGGTAGTACCCAATAA 57.359 33.333 16.05 0.00 39.75 1.40
4315 4353 9.813826 AGTAACGTATAGGTAGTACCCAATAAT 57.186 33.333 16.05 5.09 39.75 1.28
4316 4354 9.846248 GTAACGTATAGGTAGTACCCAATAATG 57.154 37.037 16.05 11.68 39.75 1.90
4317 4355 6.928520 ACGTATAGGTAGTACCCAATAATGC 58.071 40.000 16.05 5.27 39.75 3.56
4318 4356 6.723052 ACGTATAGGTAGTACCCAATAATGCT 59.277 38.462 16.05 0.00 39.75 3.79
4319 4357 7.890127 ACGTATAGGTAGTACCCAATAATGCTA 59.110 37.037 16.05 0.00 39.75 3.49
4320 4358 8.186821 CGTATAGGTAGTACCCAATAATGCTAC 58.813 40.741 16.05 3.76 39.75 3.58
4321 4359 9.028284 GTATAGGTAGTACCCAATAATGCTACA 57.972 37.037 16.05 0.00 39.75 2.74
4322 4360 8.680820 ATAGGTAGTACCCAATAATGCTACAT 57.319 34.615 16.05 0.00 39.75 2.29
4323 4361 7.005709 AGGTAGTACCCAATAATGCTACATC 57.994 40.000 16.05 0.00 39.75 3.06
4324 4362 6.787957 AGGTAGTACCCAATAATGCTACATCT 59.212 38.462 16.05 0.00 39.75 2.90
4325 4363 7.954056 AGGTAGTACCCAATAATGCTACATCTA 59.046 37.037 16.05 0.00 39.75 1.98
4326 4364 8.033626 GGTAGTACCCAATAATGCTACATCTAC 58.966 40.741 8.27 0.00 32.79 2.59
4327 4365 6.688578 AGTACCCAATAATGCTACATCTACG 58.311 40.000 0.00 0.00 0.00 3.51
4328 4366 5.546621 ACCCAATAATGCTACATCTACGT 57.453 39.130 0.00 0.00 0.00 3.57
4329 4367 6.659745 ACCCAATAATGCTACATCTACGTA 57.340 37.500 0.00 0.00 0.00 3.57
4330 4368 7.058023 ACCCAATAATGCTACATCTACGTAA 57.942 36.000 0.00 0.00 0.00 3.18
4331 4369 7.502696 ACCCAATAATGCTACATCTACGTAAA 58.497 34.615 0.00 0.00 0.00 2.01
4332 4370 7.440255 ACCCAATAATGCTACATCTACGTAAAC 59.560 37.037 0.00 0.00 0.00 2.01
4333 4371 7.439955 CCCAATAATGCTACATCTACGTAAACA 59.560 37.037 0.00 0.00 0.00 2.83
4334 4372 8.273557 CCAATAATGCTACATCTACGTAAACAC 58.726 37.037 0.00 0.00 0.00 3.32
4335 4373 9.031360 CAATAATGCTACATCTACGTAAACACT 57.969 33.333 0.00 0.00 0.00 3.55
4336 4374 9.595823 AATAATGCTACATCTACGTAAACACTT 57.404 29.630 0.00 0.00 0.00 3.16
4338 4376 7.982371 ATGCTACATCTACGTAAACACTTAC 57.018 36.000 0.00 0.00 35.08 2.34
4350 4388 6.510746 GTAAACACTTACGAAACCTTACGT 57.489 37.500 0.00 0.00 44.72 3.57
4351 4389 7.617533 GTAAACACTTACGAAACCTTACGTA 57.382 36.000 0.00 0.00 42.61 3.57
4353 4391 6.510746 AACACTTACGAAACCTTACGTAAC 57.489 37.500 3.29 0.00 45.48 2.50
4354 4392 5.831997 ACACTTACGAAACCTTACGTAACT 58.168 37.500 3.29 0.00 45.48 2.24
4355 4393 6.273071 ACACTTACGAAACCTTACGTAACTT 58.727 36.000 3.29 0.00 45.48 2.66
4356 4394 6.198966 ACACTTACGAAACCTTACGTAACTTG 59.801 38.462 3.29 0.00 45.48 3.16
4357 4395 5.175673 ACTTACGAAACCTTACGTAACTTGC 59.824 40.000 3.29 0.00 45.48 4.01
4358 4396 2.802247 ACGAAACCTTACGTAACTTGCC 59.198 45.455 3.29 0.00 40.92 4.52
4359 4397 3.062042 CGAAACCTTACGTAACTTGCCT 58.938 45.455 3.29 0.00 0.00 4.75
4360 4398 4.236935 CGAAACCTTACGTAACTTGCCTA 58.763 43.478 3.29 0.00 0.00 3.93
4361 4399 4.685628 CGAAACCTTACGTAACTTGCCTAA 59.314 41.667 3.29 0.00 0.00 2.69
4362 4400 5.177327 CGAAACCTTACGTAACTTGCCTAAA 59.823 40.000 3.29 0.00 0.00 1.85
4363 4401 5.929697 AACCTTACGTAACTTGCCTAAAC 57.070 39.130 3.29 0.00 0.00 2.01
4364 4402 4.959723 ACCTTACGTAACTTGCCTAAACA 58.040 39.130 3.29 0.00 0.00 2.83
4365 4403 5.367302 ACCTTACGTAACTTGCCTAAACAA 58.633 37.500 3.29 0.00 0.00 2.83
4366 4404 5.821995 ACCTTACGTAACTTGCCTAAACAAA 59.178 36.000 3.29 0.00 0.00 2.83
4367 4405 6.318396 ACCTTACGTAACTTGCCTAAACAAAA 59.682 34.615 3.29 0.00 0.00 2.44
4368 4406 7.013559 ACCTTACGTAACTTGCCTAAACAAAAT 59.986 33.333 3.29 0.00 0.00 1.82
4369 4407 7.863877 CCTTACGTAACTTGCCTAAACAAAATT 59.136 33.333 3.29 0.00 0.00 1.82
4370 4408 8.785468 TTACGTAACTTGCCTAAACAAAATTC 57.215 30.769 3.29 0.00 0.00 2.17
4371 4409 7.034685 ACGTAACTTGCCTAAACAAAATTCT 57.965 32.000 0.00 0.00 0.00 2.40
4372 4410 7.136772 ACGTAACTTGCCTAAACAAAATTCTC 58.863 34.615 0.00 0.00 0.00 2.87
4373 4411 7.012989 ACGTAACTTGCCTAAACAAAATTCTCT 59.987 33.333 0.00 0.00 0.00 3.10
4374 4412 7.534239 CGTAACTTGCCTAAACAAAATTCTCTC 59.466 37.037 0.00 0.00 0.00 3.20
4375 4413 6.332735 ACTTGCCTAAACAAAATTCTCTCC 57.667 37.500 0.00 0.00 0.00 3.71
4376 4414 5.243954 ACTTGCCTAAACAAAATTCTCTCCC 59.756 40.000 0.00 0.00 0.00 4.30
4377 4415 4.086457 TGCCTAAACAAAATTCTCTCCCC 58.914 43.478 0.00 0.00 0.00 4.81
4378 4416 3.447586 GCCTAAACAAAATTCTCTCCCCC 59.552 47.826 0.00 0.00 0.00 5.40
4393 4431 3.200918 CCCCCTGATTTTAACCGGG 57.799 57.895 6.32 0.00 34.62 5.73
4395 4433 3.200918 CCCTGATTTTAACCGGGGG 57.799 57.895 6.32 0.00 43.72 5.40
4396 4434 0.333652 CCCTGATTTTAACCGGGGGT 59.666 55.000 6.32 0.00 43.72 4.95
4397 4435 1.470051 CCTGATTTTAACCGGGGGTG 58.530 55.000 6.32 0.00 35.34 4.61
4398 4436 1.470051 CTGATTTTAACCGGGGGTGG 58.530 55.000 6.32 0.00 35.34 4.61
4399 4437 0.039911 TGATTTTAACCGGGGGTGGG 59.960 55.000 6.32 0.00 35.34 4.61
4400 4438 1.305465 ATTTTAACCGGGGGTGGGC 60.305 57.895 6.32 0.00 35.34 5.36
4401 4439 2.808761 ATTTTAACCGGGGGTGGGCC 62.809 60.000 6.32 0.00 35.34 5.80
4424 4462 3.994000 CCCCCTCTCTCCAATCCC 58.006 66.667 0.00 0.00 0.00 3.85
4425 4463 1.004758 CCCCCTCTCTCCAATCCCA 59.995 63.158 0.00 0.00 0.00 4.37
4426 4464 1.059006 CCCCCTCTCTCCAATCCCAG 61.059 65.000 0.00 0.00 0.00 4.45
4427 4465 1.704007 CCCCTCTCTCCAATCCCAGC 61.704 65.000 0.00 0.00 0.00 4.85
4428 4466 0.693767 CCCTCTCTCCAATCCCAGCT 60.694 60.000 0.00 0.00 0.00 4.24
4429 4467 0.758123 CCTCTCTCCAATCCCAGCTC 59.242 60.000 0.00 0.00 0.00 4.09
4430 4468 1.493861 CTCTCTCCAATCCCAGCTCA 58.506 55.000 0.00 0.00 0.00 4.26
4431 4469 1.138661 CTCTCTCCAATCCCAGCTCAC 59.861 57.143 0.00 0.00 0.00 3.51
4432 4470 0.179936 CTCTCCAATCCCAGCTCACC 59.820 60.000 0.00 0.00 0.00 4.02
4433 4471 1.153289 CTCCAATCCCAGCTCACCG 60.153 63.158 0.00 0.00 0.00 4.94
4434 4472 1.903877 CTCCAATCCCAGCTCACCGT 61.904 60.000 0.00 0.00 0.00 4.83
4435 4473 1.746615 CCAATCCCAGCTCACCGTG 60.747 63.158 0.00 0.00 0.00 4.94
4436 4474 1.003355 CAATCCCAGCTCACCGTGT 60.003 57.895 0.00 0.00 0.00 4.49
4437 4475 0.606401 CAATCCCAGCTCACCGTGTT 60.606 55.000 0.00 0.00 0.00 3.32
4438 4476 0.606401 AATCCCAGCTCACCGTGTTG 60.606 55.000 0.00 0.00 0.00 3.33
4439 4477 3.357079 CCCAGCTCACCGTGTTGC 61.357 66.667 9.97 9.97 0.00 4.17
4440 4478 2.281070 CCAGCTCACCGTGTTGCT 60.281 61.111 13.31 13.31 36.04 3.91
4441 4479 2.941333 CAGCTCACCGTGTTGCTG 59.059 61.111 23.72 23.72 45.15 4.41
4442 4480 1.889105 CAGCTCACCGTGTTGCTGT 60.889 57.895 26.17 7.64 45.31 4.40
4443 4481 1.153168 AGCTCACCGTGTTGCTGTT 60.153 52.632 16.69 0.00 34.19 3.16
4444 4482 0.748005 AGCTCACCGTGTTGCTGTTT 60.748 50.000 16.69 0.00 34.19 2.83
4445 4483 0.941542 GCTCACCGTGTTGCTGTTTA 59.058 50.000 10.48 0.00 0.00 2.01
4446 4484 1.333791 GCTCACCGTGTTGCTGTTTAC 60.334 52.381 10.48 0.00 0.00 2.01
4447 4485 0.931702 TCACCGTGTTGCTGTTTACG 59.068 50.000 0.00 0.00 36.39 3.18
4448 4486 0.653636 CACCGTGTTGCTGTTTACGT 59.346 50.000 0.00 0.00 34.96 3.57
4449 4487 1.062880 CACCGTGTTGCTGTTTACGTT 59.937 47.619 0.00 0.00 34.96 3.99
4450 4488 2.284684 CACCGTGTTGCTGTTTACGTTA 59.715 45.455 0.00 0.00 34.96 3.18
4451 4489 2.935201 ACCGTGTTGCTGTTTACGTTAA 59.065 40.909 0.00 0.00 34.96 2.01
4452 4490 3.560896 ACCGTGTTGCTGTTTACGTTAAT 59.439 39.130 0.00 0.00 34.96 1.40
4453 4491 4.035441 ACCGTGTTGCTGTTTACGTTAATT 59.965 37.500 0.00 0.00 34.96 1.40
4454 4492 4.609708 CCGTGTTGCTGTTTACGTTAATTC 59.390 41.667 0.00 0.00 34.96 2.17
4455 4493 5.199000 CGTGTTGCTGTTTACGTTAATTCA 58.801 37.500 0.00 0.00 0.00 2.57
4456 4494 5.112937 CGTGTTGCTGTTTACGTTAATTCAC 59.887 40.000 0.00 0.00 0.00 3.18
4457 4495 5.112937 GTGTTGCTGTTTACGTTAATTCACG 59.887 40.000 10.51 10.51 46.04 4.35
4470 4508 6.544595 CGTTAATTCACGTTTGTGTTTTACG 58.455 36.000 4.00 0.00 46.49 3.18
4472 4510 7.369284 CGTTAATTCACGTTTGTGTTTTACGTA 59.631 33.333 4.00 0.00 45.67 3.57
4473 4511 8.663753 GTTAATTCACGTTTGTGTTTTACGTAG 58.336 33.333 0.00 0.00 45.67 3.51
4474 4512 6.586868 ATTCACGTTTGTGTTTTACGTAGA 57.413 33.333 0.00 0.00 45.67 2.59
4475 4513 6.586868 TTCACGTTTGTGTTTTACGTAGAT 57.413 33.333 0.00 0.00 45.67 1.98
4476 4514 5.965202 TCACGTTTGTGTTTTACGTAGATG 58.035 37.500 0.00 0.00 45.67 2.90
4477 4515 5.519566 TCACGTTTGTGTTTTACGTAGATGT 59.480 36.000 0.00 0.00 45.67 3.06
4478 4516 6.694844 TCACGTTTGTGTTTTACGTAGATGTA 59.305 34.615 0.00 0.00 45.67 2.29
4479 4517 6.999627 CACGTTTGTGTTTTACGTAGATGTAG 59.000 38.462 0.00 0.00 45.67 2.74
4480 4518 6.005289 CGTTTGTGTTTTACGTAGATGTAGC 58.995 40.000 0.00 0.00 0.00 3.58
4481 4519 6.345961 CGTTTGTGTTTTACGTAGATGTAGCA 60.346 38.462 0.00 0.00 0.00 3.49
4482 4520 7.515643 GTTTGTGTTTTACGTAGATGTAGCAT 58.484 34.615 0.00 0.00 0.00 3.79
4483 4521 6.880822 TGTGTTTTACGTAGATGTAGCATC 57.119 37.500 0.00 1.18 0.00 3.91
4484 4522 5.513849 TGTGTTTTACGTAGATGTAGCATCG 59.486 40.000 0.00 0.00 0.00 3.84
4485 4523 4.501559 TGTTTTACGTAGATGTAGCATCGC 59.498 41.667 0.00 1.45 0.00 4.58
4486 4524 4.563337 TTTACGTAGATGTAGCATCGCT 57.437 40.909 0.00 0.00 43.41 4.93
4487 4525 2.407521 ACGTAGATGTAGCATCGCTG 57.592 50.000 0.00 1.20 40.10 5.18
4488 4526 1.947456 ACGTAGATGTAGCATCGCTGA 59.053 47.619 0.00 0.00 40.10 4.26
4489 4527 2.031595 ACGTAGATGTAGCATCGCTGAG 60.032 50.000 0.00 0.00 40.10 3.35
4490 4528 2.666895 CGTAGATGTAGCATCGCTGAGG 60.667 54.545 0.00 0.00 40.10 3.86
4491 4529 1.407936 AGATGTAGCATCGCTGAGGT 58.592 50.000 0.00 0.00 40.10 3.85
4492 4530 2.587522 AGATGTAGCATCGCTGAGGTA 58.412 47.619 0.00 0.00 40.10 3.08
4493 4531 2.556189 AGATGTAGCATCGCTGAGGTAG 59.444 50.000 0.00 0.00 40.10 3.18
4494 4532 1.763968 TGTAGCATCGCTGAGGTAGT 58.236 50.000 0.00 0.00 40.10 2.73
4495 4533 2.927028 TGTAGCATCGCTGAGGTAGTA 58.073 47.619 0.00 0.00 40.10 1.82
4496 4534 2.617308 TGTAGCATCGCTGAGGTAGTAC 59.383 50.000 0.00 0.00 40.10 2.73
4497 4535 1.033574 AGCATCGCTGAGGTAGTACC 58.966 55.000 11.73 11.73 37.57 3.34
4498 4536 2.158652 TAGCATCGCTGAGGTAGTACCT 60.159 50.000 22.26 22.26 45.70 3.08
4499 4537 3.072038 TAGCATCGCTGAGGTAGTACCTA 59.928 47.826 22.12 6.52 44.14 3.08
4500 4538 4.803253 TAGCATCGCTGAGGTAGTACCTAG 60.803 50.000 22.12 18.27 44.14 3.02
4501 4539 7.207454 TAGCATCGCTGAGGTAGTACCTAGT 62.207 48.000 22.12 0.00 44.14 2.57
4511 4549 5.321959 GGTAGTACCTAGTGGAGTTCAAC 57.678 47.826 12.41 0.00 34.73 3.18
4512 4550 5.015515 GGTAGTACCTAGTGGAGTTCAACT 58.984 45.833 12.41 0.00 34.73 3.16
4513 4551 6.183347 GGTAGTACCTAGTGGAGTTCAACTA 58.817 44.000 12.41 0.00 34.73 2.24
4514 4552 6.318396 GGTAGTACCTAGTGGAGTTCAACTAG 59.682 46.154 12.41 14.30 34.73 2.57
4515 4553 4.705991 AGTACCTAGTGGAGTTCAACTAGC 59.294 45.833 15.40 5.37 37.04 3.42
4516 4554 2.492484 ACCTAGTGGAGTTCAACTAGCG 59.508 50.000 15.40 11.89 37.04 4.26
4517 4555 2.753452 CCTAGTGGAGTTCAACTAGCGA 59.247 50.000 15.40 0.00 32.95 4.93
4518 4556 3.381908 CCTAGTGGAGTTCAACTAGCGAT 59.618 47.826 15.40 0.00 32.95 4.58
4519 4557 3.963428 AGTGGAGTTCAACTAGCGATT 57.037 42.857 0.00 0.00 0.00 3.34
4520 4558 4.273148 AGTGGAGTTCAACTAGCGATTT 57.727 40.909 0.00 0.00 0.00 2.17
4521 4559 4.642429 AGTGGAGTTCAACTAGCGATTTT 58.358 39.130 0.00 0.00 0.00 1.82
4522 4560 4.452455 AGTGGAGTTCAACTAGCGATTTTG 59.548 41.667 0.00 0.00 0.00 2.44
4542 4580 6.995511 TTTGATAGGGAAACGTTTCTATGG 57.004 37.500 33.23 0.00 37.35 2.74
4544 4582 4.472108 TGATAGGGAAACGTTTCTATGGGT 59.528 41.667 33.23 18.28 37.35 4.51
4547 4587 2.004733 GGAAACGTTTCTATGGGTCGG 58.995 52.381 33.23 0.00 37.35 4.79
4549 4589 0.392060 AACGTTTCTATGGGTCGGCC 60.392 55.000 0.00 0.00 0.00 6.13
4617 4667 4.021925 GCGACTCACCTGCCCCTT 62.022 66.667 0.00 0.00 0.00 3.95
4634 4684 4.302930 CCCCTTCCTTATCTTCTTCCTCT 58.697 47.826 0.00 0.00 0.00 3.69
4641 4691 4.219725 CCTTATCTTCTTCCTCTCGATCCC 59.780 50.000 0.00 0.00 0.00 3.85
4644 4712 2.023888 TCTTCTTCCTCTCGATCCCCTT 60.024 50.000 0.00 0.00 0.00 3.95
4666 4734 4.877773 TCCTCCTAAATTCTCTCTCAGCT 58.122 43.478 0.00 0.00 0.00 4.24
4668 4736 4.370917 CTCCTAAATTCTCTCTCAGCTGC 58.629 47.826 9.47 0.00 0.00 5.25
4692 4760 4.462133 GCATGGGGGTGGCCATGA 62.462 66.667 9.72 0.00 44.43 3.07
4712 4780 2.499693 GACCTTCCTCTTCCTCCTTCAG 59.500 54.545 0.00 0.00 0.00 3.02
4741 4809 3.878667 AGCTAGCCCCAATCCCGC 61.879 66.667 12.13 0.00 0.00 6.13
4766 4834 4.222124 GGTCCATACCTTCAACATCAGT 57.778 45.455 0.00 0.00 43.08 3.41
4771 4839 2.592102 ACCTTCAACATCAGTGCCAT 57.408 45.000 0.00 0.00 0.00 4.40
4787 4855 0.890683 CCATGCCCACTTCTTTCCAC 59.109 55.000 0.00 0.00 0.00 4.02
4792 4860 1.237285 CCCACTTCTTTCCACTGCCG 61.237 60.000 0.00 0.00 0.00 5.69
4850 4920 0.536006 GAAGCCGCCATGGATAAGCT 60.536 55.000 18.40 13.98 42.00 3.74
4870 4940 0.975040 ATCCGAGAGCTGCTGGAACT 60.975 55.000 7.01 0.00 33.48 3.01
4889 4959 0.324368 TGTCCACCGGAGATGCTACT 60.324 55.000 9.46 0.00 29.39 2.57
4918 4988 2.363147 GCGACCTCCTCTCCCTGT 60.363 66.667 0.00 0.00 0.00 4.00
4959 5029 6.917217 TCCAAACGAAATTGAAAGCATTTT 57.083 29.167 0.00 0.00 39.27 1.82
4995 5065 0.378962 TTGCAACCGACGACCAAAAG 59.621 50.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.005156 GAGGCTCGATCTGGCATCC 60.005 63.158 0.00 0.00 33.86 3.51
1 2 1.005156 GGAGGCTCGATCTGGCATC 60.005 63.158 8.69 11.24 38.34 3.91
2 3 1.459158 AGGAGGCTCGATCTGGCAT 60.459 57.895 8.69 3.30 0.00 4.40
3 4 2.042537 AGGAGGCTCGATCTGGCA 60.043 61.111 8.69 0.00 0.00 4.92
4 5 2.733945 GAGGAGGCTCGATCTGGC 59.266 66.667 8.69 0.00 0.00 4.85
5 6 1.456518 TGGAGGAGGCTCGATCTGG 60.457 63.158 8.69 0.00 0.00 3.86
6 7 1.039785 TGTGGAGGAGGCTCGATCTG 61.040 60.000 8.69 0.00 0.00 2.90
7 8 0.754957 CTGTGGAGGAGGCTCGATCT 60.755 60.000 8.69 0.00 0.00 2.75
8 9 0.753479 TCTGTGGAGGAGGCTCGATC 60.753 60.000 8.69 9.02 0.00 3.69
9 10 0.105760 ATCTGTGGAGGAGGCTCGAT 60.106 55.000 8.69 0.00 0.00 3.59
10 11 0.753479 GATCTGTGGAGGAGGCTCGA 60.753 60.000 8.69 0.00 0.00 4.04
11 12 1.039785 TGATCTGTGGAGGAGGCTCG 61.040 60.000 8.69 0.00 0.00 5.03
12 13 1.134551 GTTGATCTGTGGAGGAGGCTC 60.135 57.143 5.78 5.78 0.00 4.70
13 14 0.908198 GTTGATCTGTGGAGGAGGCT 59.092 55.000 0.00 0.00 0.00 4.58
14 15 0.615331 TGTTGATCTGTGGAGGAGGC 59.385 55.000 0.00 0.00 0.00 4.70
15 16 3.054875 TCATTGTTGATCTGTGGAGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
16 17 4.190001 CTCATTGTTGATCTGTGGAGGAG 58.810 47.826 0.00 0.00 0.00 3.69
17 18 3.584406 ACTCATTGTTGATCTGTGGAGGA 59.416 43.478 0.00 0.00 0.00 3.71
18 19 3.947868 ACTCATTGTTGATCTGTGGAGG 58.052 45.455 0.00 0.00 0.00 4.30
19 20 5.482006 TGTACTCATTGTTGATCTGTGGAG 58.518 41.667 0.00 0.00 0.00 3.86
20 21 5.482163 TGTACTCATTGTTGATCTGTGGA 57.518 39.130 0.00 0.00 0.00 4.02
21 22 5.006068 CGATGTACTCATTGTTGATCTGTGG 59.994 44.000 0.00 0.00 34.06 4.17
22 23 5.807011 TCGATGTACTCATTGTTGATCTGTG 59.193 40.000 0.00 0.00 36.93 3.66
23 24 5.965922 TCGATGTACTCATTGTTGATCTGT 58.034 37.500 0.00 0.00 36.93 3.41
24 25 6.268566 TCTCGATGTACTCATTGTTGATCTG 58.731 40.000 0.00 0.00 36.93 2.90
25 26 6.456795 TCTCGATGTACTCATTGTTGATCT 57.543 37.500 0.00 0.00 36.93 2.75
26 27 6.975197 TCTTCTCGATGTACTCATTGTTGATC 59.025 38.462 0.00 0.00 36.93 2.92
27 28 6.754209 GTCTTCTCGATGTACTCATTGTTGAT 59.246 38.462 0.00 0.00 36.93 2.57
28 29 6.093404 GTCTTCTCGATGTACTCATTGTTGA 58.907 40.000 0.00 0.00 36.93 3.18
29 30 5.289675 GGTCTTCTCGATGTACTCATTGTTG 59.710 44.000 0.00 0.00 36.93 3.33
30 31 5.411781 GGTCTTCTCGATGTACTCATTGTT 58.588 41.667 0.00 0.00 36.93 2.83
31 32 4.142138 GGGTCTTCTCGATGTACTCATTGT 60.142 45.833 0.00 0.00 36.93 2.71
32 33 4.098654 AGGGTCTTCTCGATGTACTCATTG 59.901 45.833 0.00 0.00 36.93 2.82
33 34 4.282496 AGGGTCTTCTCGATGTACTCATT 58.718 43.478 0.00 0.00 34.06 2.57
34 35 3.904717 AGGGTCTTCTCGATGTACTCAT 58.095 45.455 0.00 0.00 36.95 2.90
35 36 3.367646 AGGGTCTTCTCGATGTACTCA 57.632 47.619 0.00 0.00 0.00 3.41
36 37 4.036616 GGTTAGGGTCTTCTCGATGTACTC 59.963 50.000 0.00 0.00 0.00 2.59
37 38 3.952967 GGTTAGGGTCTTCTCGATGTACT 59.047 47.826 0.00 0.00 0.00 2.73
38 39 3.067883 GGGTTAGGGTCTTCTCGATGTAC 59.932 52.174 0.00 0.00 0.00 2.90
39 40 3.294214 GGGTTAGGGTCTTCTCGATGTA 58.706 50.000 0.00 0.00 0.00 2.29
40 41 2.108970 GGGTTAGGGTCTTCTCGATGT 58.891 52.381 0.00 0.00 0.00 3.06
41 42 2.108168 TGGGTTAGGGTCTTCTCGATG 58.892 52.381 0.00 0.00 0.00 3.84
42 43 2.500504 GTTGGGTTAGGGTCTTCTCGAT 59.499 50.000 0.00 0.00 0.00 3.59
43 44 1.897802 GTTGGGTTAGGGTCTTCTCGA 59.102 52.381 0.00 0.00 0.00 4.04
44 45 1.900486 AGTTGGGTTAGGGTCTTCTCG 59.100 52.381 0.00 0.00 0.00 4.04
45 46 2.904434 TGAGTTGGGTTAGGGTCTTCTC 59.096 50.000 0.00 0.00 0.00 2.87
46 47 2.986050 TGAGTTGGGTTAGGGTCTTCT 58.014 47.619 0.00 0.00 0.00 2.85
47 48 3.559384 CCTTGAGTTGGGTTAGGGTCTTC 60.559 52.174 0.00 0.00 0.00 2.87
48 49 2.375509 CCTTGAGTTGGGTTAGGGTCTT 59.624 50.000 0.00 0.00 0.00 3.01
49 50 1.985895 CCTTGAGTTGGGTTAGGGTCT 59.014 52.381 0.00 0.00 0.00 3.85
50 51 1.004394 CCCTTGAGTTGGGTTAGGGTC 59.996 57.143 0.00 0.00 40.58 4.46
51 52 1.073098 CCCTTGAGTTGGGTTAGGGT 58.927 55.000 0.00 0.00 40.58 4.34
52 53 0.331616 CCCCTTGAGTTGGGTTAGGG 59.668 60.000 0.00 0.00 44.27 3.53
53 54 0.331616 CCCCCTTGAGTTGGGTTAGG 59.668 60.000 0.00 0.00 43.09 2.69
54 55 0.323451 GCCCCCTTGAGTTGGGTTAG 60.323 60.000 0.00 0.00 43.09 2.34
55 56 1.068943 TGCCCCCTTGAGTTGGGTTA 61.069 55.000 0.00 0.00 43.09 2.85
56 57 2.371897 CTGCCCCCTTGAGTTGGGTT 62.372 60.000 0.00 0.00 43.09 4.11
57 58 2.780924 TGCCCCCTTGAGTTGGGT 60.781 61.111 0.00 0.00 43.09 4.51
58 59 2.036256 CTGCCCCCTTGAGTTGGG 59.964 66.667 0.00 0.00 44.19 4.12
59 60 0.404040 TAACTGCCCCCTTGAGTTGG 59.596 55.000 0.00 0.00 32.27 3.77
60 61 2.094675 CATAACTGCCCCCTTGAGTTG 58.905 52.381 0.00 0.00 32.27 3.16
61 62 1.005924 CCATAACTGCCCCCTTGAGTT 59.994 52.381 0.00 0.00 34.36 3.01
62 63 0.625849 CCATAACTGCCCCCTTGAGT 59.374 55.000 0.00 0.00 0.00 3.41
63 64 0.918983 TCCATAACTGCCCCCTTGAG 59.081 55.000 0.00 0.00 0.00 3.02
64 65 1.284785 CTTCCATAACTGCCCCCTTGA 59.715 52.381 0.00 0.00 0.00 3.02
65 66 1.005924 ACTTCCATAACTGCCCCCTTG 59.994 52.381 0.00 0.00 0.00 3.61
66 67 1.382914 ACTTCCATAACTGCCCCCTT 58.617 50.000 0.00 0.00 0.00 3.95
67 68 1.005924 CAACTTCCATAACTGCCCCCT 59.994 52.381 0.00 0.00 0.00 4.79
68 69 1.474330 CAACTTCCATAACTGCCCCC 58.526 55.000 0.00 0.00 0.00 5.40
69 70 1.474330 CCAACTTCCATAACTGCCCC 58.526 55.000 0.00 0.00 0.00 5.80
70 71 0.817654 GCCAACTTCCATAACTGCCC 59.182 55.000 0.00 0.00 0.00 5.36
71 72 1.839424 AGCCAACTTCCATAACTGCC 58.161 50.000 0.00 0.00 0.00 4.85
72 73 4.455606 AGATAGCCAACTTCCATAACTGC 58.544 43.478 0.00 0.00 0.00 4.40
73 74 6.352516 AGAAGATAGCCAACTTCCATAACTG 58.647 40.000 0.00 0.00 42.09 3.16
74 75 6.567602 AGAAGATAGCCAACTTCCATAACT 57.432 37.500 0.00 0.00 42.09 2.24
75 76 8.732746 TTTAGAAGATAGCCAACTTCCATAAC 57.267 34.615 0.00 0.00 42.09 1.89
76 77 9.920946 ATTTTAGAAGATAGCCAACTTCCATAA 57.079 29.630 0.00 0.00 42.09 1.90
77 78 9.342308 CATTTTAGAAGATAGCCAACTTCCATA 57.658 33.333 0.00 0.00 42.09 2.74
78 79 7.836183 ACATTTTAGAAGATAGCCAACTTCCAT 59.164 33.333 0.00 0.00 42.09 3.41
79 80 7.175104 ACATTTTAGAAGATAGCCAACTTCCA 58.825 34.615 0.00 0.00 42.09 3.53
80 81 7.631717 ACATTTTAGAAGATAGCCAACTTCC 57.368 36.000 0.00 0.00 42.09 3.46
86 87 9.905713 ACAAGAATACATTTTAGAAGATAGCCA 57.094 29.630 0.00 0.00 0.00 4.75
125 126 7.633193 TTGACTAGTAAAGCAAGACCAAAAA 57.367 32.000 0.00 0.00 0.00 1.94
126 127 7.633193 TTTGACTAGTAAAGCAAGACCAAAA 57.367 32.000 0.00 0.00 0.00 2.44
127 128 7.633193 TTTTGACTAGTAAAGCAAGACCAAA 57.367 32.000 0.00 0.00 0.00 3.28
128 129 7.817418 ATTTTGACTAGTAAAGCAAGACCAA 57.183 32.000 0.00 0.00 0.00 3.67
129 130 8.946085 CATATTTTGACTAGTAAAGCAAGACCA 58.054 33.333 0.00 0.00 0.00 4.02
130 131 9.162764 TCATATTTTGACTAGTAAAGCAAGACC 57.837 33.333 0.00 0.00 0.00 3.85
189 190 9.705290 TTCTTTGCAAGTTCTTTACTTTTCTTT 57.295 25.926 0.00 0.00 44.73 2.52
190 191 9.705290 TTTCTTTGCAAGTTCTTTACTTTTCTT 57.295 25.926 0.00 0.00 44.73 2.52
191 192 9.705290 TTTTCTTTGCAAGTTCTTTACTTTTCT 57.295 25.926 0.00 0.00 44.73 2.52
196 197 7.548780 TGCATTTTTCTTTGCAAGTTCTTTACT 59.451 29.630 0.00 0.00 45.30 2.24
197 198 7.683746 TGCATTTTTCTTTGCAAGTTCTTTAC 58.316 30.769 0.00 0.00 45.30 2.01
198 199 7.840342 TGCATTTTTCTTTGCAAGTTCTTTA 57.160 28.000 0.00 0.00 45.30 1.85
199 200 6.740411 TGCATTTTTCTTTGCAAGTTCTTT 57.260 29.167 0.00 0.00 45.30 2.52
208 209 2.067766 TCCGCATGCATTTTTCTTTGC 58.932 42.857 19.57 0.00 39.33 3.68
209 210 3.058450 TGTCCGCATGCATTTTTCTTTG 58.942 40.909 19.57 0.00 0.00 2.77
210 211 3.319755 CTGTCCGCATGCATTTTTCTTT 58.680 40.909 19.57 0.00 0.00 2.52
211 212 2.353011 CCTGTCCGCATGCATTTTTCTT 60.353 45.455 19.57 0.00 0.00 2.52
212 213 1.203052 CCTGTCCGCATGCATTTTTCT 59.797 47.619 19.57 0.00 0.00 2.52
213 214 1.202114 TCCTGTCCGCATGCATTTTTC 59.798 47.619 19.57 2.16 0.00 2.29
214 215 1.255882 TCCTGTCCGCATGCATTTTT 58.744 45.000 19.57 0.00 0.00 1.94
215 216 1.135527 CATCCTGTCCGCATGCATTTT 59.864 47.619 19.57 0.00 0.00 1.82
216 217 0.742505 CATCCTGTCCGCATGCATTT 59.257 50.000 19.57 0.00 0.00 2.32
217 218 1.731433 GCATCCTGTCCGCATGCATT 61.731 55.000 19.57 0.00 42.18 3.56
218 219 2.191513 GCATCCTGTCCGCATGCAT 61.192 57.895 19.57 0.00 42.18 3.96
219 220 2.825387 GCATCCTGTCCGCATGCA 60.825 61.111 19.57 0.00 42.18 3.96
220 221 2.825387 TGCATCCTGTCCGCATGC 60.825 61.111 7.91 7.91 42.81 4.06
221 222 2.831366 GCTGCATCCTGTCCGCATG 61.831 63.158 0.00 0.00 34.63 4.06
222 223 2.515523 GCTGCATCCTGTCCGCAT 60.516 61.111 0.00 0.00 34.63 4.73
223 224 4.783621 GGCTGCATCCTGTCCGCA 62.784 66.667 0.50 0.00 0.00 5.69
226 227 4.864334 CCCGGCTGCATCCTGTCC 62.864 72.222 4.84 0.00 0.00 4.02
227 228 4.864334 CCCCGGCTGCATCCTGTC 62.864 72.222 4.84 0.00 0.00 3.51
229 230 4.864334 GTCCCCGGCTGCATCCTG 62.864 72.222 4.84 0.00 0.00 3.86
231 232 4.864334 CTGTCCCCGGCTGCATCC 62.864 72.222 0.50 0.00 0.00 3.51
232 233 4.864334 CCTGTCCCCGGCTGCATC 62.864 72.222 0.50 0.00 0.00 3.91
235 236 4.864334 CATCCTGTCCCCGGCTGC 62.864 72.222 0.00 0.00 0.00 5.25
236 237 4.864334 GCATCCTGTCCCCGGCTG 62.864 72.222 0.00 0.00 0.00 4.85
249 250 4.856801 ACACATCCCGGCCGCATC 62.857 66.667 22.85 0.00 0.00 3.91
250 251 4.856801 GACACATCCCGGCCGCAT 62.857 66.667 22.85 11.23 0.00 4.73
260 261 4.505217 CAAGCGCGCGGACACATC 62.505 66.667 33.06 12.91 0.00 3.06
284 285 1.745489 GTTCTGGGATGCGGTGACC 60.745 63.158 0.00 0.00 0.00 4.02
285 286 1.003839 TGTTCTGGGATGCGGTGAC 60.004 57.895 0.00 0.00 0.00 3.67
286 287 1.003839 GTGTTCTGGGATGCGGTGA 60.004 57.895 0.00 0.00 0.00 4.02
287 288 2.390599 CGTGTTCTGGGATGCGGTG 61.391 63.158 0.00 0.00 0.00 4.94
288 289 2.047274 CGTGTTCTGGGATGCGGT 60.047 61.111 0.00 0.00 0.00 5.68
289 290 3.499737 GCGTGTTCTGGGATGCGG 61.500 66.667 0.00 0.00 0.00 5.69
290 291 3.499737 GGCGTGTTCTGGGATGCG 61.500 66.667 0.00 0.00 0.00 4.73
291 292 3.134127 GGGCGTGTTCTGGGATGC 61.134 66.667 0.00 0.00 0.00 3.91
292 293 2.819595 CGGGCGTGTTCTGGGATG 60.820 66.667 0.00 0.00 0.00 3.51
293 294 4.096003 CCGGGCGTGTTCTGGGAT 62.096 66.667 0.00 0.00 0.00 3.85
296 297 4.308458 TGTCCGGGCGTGTTCTGG 62.308 66.667 0.00 0.00 0.00 3.86
297 298 3.041940 GTGTCCGGGCGTGTTCTG 61.042 66.667 0.00 0.00 0.00 3.02
298 299 4.657824 CGTGTCCGGGCGTGTTCT 62.658 66.667 0.00 0.00 0.00 3.01
299 300 3.927163 ATCGTGTCCGGGCGTGTTC 62.927 63.158 0.00 0.00 33.95 3.18
300 301 3.524648 AATCGTGTCCGGGCGTGTT 62.525 57.895 0.00 2.20 33.95 3.32
301 302 3.927163 GAATCGTGTCCGGGCGTGT 62.927 63.158 0.00 0.00 33.95 4.49
302 303 3.186047 GAATCGTGTCCGGGCGTG 61.186 66.667 0.00 0.00 33.95 5.34
303 304 4.446413 GGAATCGTGTCCGGGCGT 62.446 66.667 0.00 0.00 33.95 5.68
304 305 3.943479 TTGGAATCGTGTCCGGGCG 62.943 63.158 0.00 4.49 40.96 6.13
305 306 1.029947 ATTTGGAATCGTGTCCGGGC 61.030 55.000 0.00 0.00 40.96 6.13
306 307 1.014352 GATTTGGAATCGTGTCCGGG 58.986 55.000 0.00 0.00 40.96 5.73
307 308 1.014352 GGATTTGGAATCGTGTCCGG 58.986 55.000 0.00 0.00 40.96 5.14
308 309 1.014352 GGGATTTGGAATCGTGTCCG 58.986 55.000 3.28 0.00 40.96 4.79
309 310 2.420058 AGGGATTTGGAATCGTGTCC 57.580 50.000 0.78 0.78 38.27 4.02
310 311 3.203716 GGTAGGGATTTGGAATCGTGTC 58.796 50.000 0.00 0.00 0.00 3.67
311 312 2.092592 GGGTAGGGATTTGGAATCGTGT 60.093 50.000 0.00 0.00 0.00 4.49
312 313 2.092646 TGGGTAGGGATTTGGAATCGTG 60.093 50.000 0.00 0.00 0.00 4.35
313 314 2.201830 TGGGTAGGGATTTGGAATCGT 58.798 47.619 0.00 0.00 0.00 3.73
314 315 3.290948 TTGGGTAGGGATTTGGAATCG 57.709 47.619 0.00 0.00 0.00 3.34
315 316 3.380320 CGTTTGGGTAGGGATTTGGAATC 59.620 47.826 0.00 0.00 0.00 2.52
316 317 3.361786 CGTTTGGGTAGGGATTTGGAAT 58.638 45.455 0.00 0.00 0.00 3.01
317 318 2.555670 CCGTTTGGGTAGGGATTTGGAA 60.556 50.000 0.00 0.00 0.00 3.53
318 319 1.004979 CCGTTTGGGTAGGGATTTGGA 59.995 52.381 0.00 0.00 0.00 3.53
319 320 1.004979 TCCGTTTGGGTAGGGATTTGG 59.995 52.381 0.00 0.00 37.00 3.28
320 321 2.089201 GTCCGTTTGGGTAGGGATTTG 58.911 52.381 0.00 0.00 34.83 2.32
321 322 1.706305 TGTCCGTTTGGGTAGGGATTT 59.294 47.619 0.00 0.00 34.83 2.17
322 323 1.280998 CTGTCCGTTTGGGTAGGGATT 59.719 52.381 0.00 0.00 34.83 3.01
323 324 0.909623 CTGTCCGTTTGGGTAGGGAT 59.090 55.000 0.00 0.00 34.83 3.85
324 325 0.178926 TCTGTCCGTTTGGGTAGGGA 60.179 55.000 0.00 0.00 37.00 4.20
325 326 0.688487 TTCTGTCCGTTTGGGTAGGG 59.312 55.000 0.00 0.00 37.00 3.53
326 327 2.236395 AGATTCTGTCCGTTTGGGTAGG 59.764 50.000 0.00 0.00 37.00 3.18
327 328 3.262420 CAGATTCTGTCCGTTTGGGTAG 58.738 50.000 5.46 0.00 37.00 3.18
328 329 2.027561 CCAGATTCTGTCCGTTTGGGTA 60.028 50.000 12.54 0.00 37.00 3.69
329 330 1.271379 CCAGATTCTGTCCGTTTGGGT 60.271 52.381 12.54 0.00 37.00 4.51
330 331 1.003118 TCCAGATTCTGTCCGTTTGGG 59.997 52.381 12.54 0.00 35.24 4.12
331 332 2.472695 TCCAGATTCTGTCCGTTTGG 57.527 50.000 12.54 0.00 0.00 3.28
332 333 6.314784 GTTTTATCCAGATTCTGTCCGTTTG 58.685 40.000 12.54 0.00 0.00 2.93
333 334 5.121768 CGTTTTATCCAGATTCTGTCCGTTT 59.878 40.000 12.54 0.00 0.00 3.60
334 335 4.630069 CGTTTTATCCAGATTCTGTCCGTT 59.370 41.667 12.54 0.00 0.00 4.44
335 336 4.181578 CGTTTTATCCAGATTCTGTCCGT 58.818 43.478 12.54 0.00 0.00 4.69
336 337 3.555956 CCGTTTTATCCAGATTCTGTCCG 59.444 47.826 12.54 0.00 0.00 4.79
337 338 4.571176 GTCCGTTTTATCCAGATTCTGTCC 59.429 45.833 12.54 0.00 0.00 4.02
338 339 5.175859 TGTCCGTTTTATCCAGATTCTGTC 58.824 41.667 12.54 0.00 0.00 3.51
339 340 5.160607 TGTCCGTTTTATCCAGATTCTGT 57.839 39.130 12.54 0.00 0.00 3.41
340 341 5.237344 GGATGTCCGTTTTATCCAGATTCTG 59.763 44.000 6.70 6.70 40.07 3.02
341 342 5.368989 GGATGTCCGTTTTATCCAGATTCT 58.631 41.667 0.00 0.00 40.07 2.40
342 343 5.674933 GGATGTCCGTTTTATCCAGATTC 57.325 43.478 0.00 0.00 40.07 2.52
357 358 1.597663 CGCCATCTTAAACGGATGTCC 59.402 52.381 0.00 0.00 38.95 4.02
358 359 1.003866 GCGCCATCTTAAACGGATGTC 60.004 52.381 0.00 0.00 38.95 3.06
359 360 1.014352 GCGCCATCTTAAACGGATGT 58.986 50.000 0.00 0.00 38.95 3.06
360 361 0.042188 CGCGCCATCTTAAACGGATG 60.042 55.000 0.00 0.00 39.94 3.51
361 362 1.157870 CCGCGCCATCTTAAACGGAT 61.158 55.000 0.00 0.00 43.19 4.18
362 363 1.812093 CCGCGCCATCTTAAACGGA 60.812 57.895 0.00 0.00 43.19 4.69
363 364 2.104253 ACCGCGCCATCTTAAACGG 61.104 57.895 0.00 0.00 45.86 4.44
364 365 1.060308 CACCGCGCCATCTTAAACG 59.940 57.895 0.00 0.00 0.00 3.60
365 366 0.800012 TTCACCGCGCCATCTTAAAC 59.200 50.000 0.00 0.00 0.00 2.01
366 367 1.083489 CTTCACCGCGCCATCTTAAA 58.917 50.000 0.00 0.00 0.00 1.52
367 368 0.036765 ACTTCACCGCGCCATCTTAA 60.037 50.000 0.00 0.00 0.00 1.85
368 369 0.036765 AACTTCACCGCGCCATCTTA 60.037 50.000 0.00 0.00 0.00 2.10
369 370 1.302511 AACTTCACCGCGCCATCTT 60.303 52.632 0.00 0.00 0.00 2.40
370 371 2.034879 CAACTTCACCGCGCCATCT 61.035 57.895 0.00 0.00 0.00 2.90
371 372 2.032634 TCAACTTCACCGCGCCATC 61.033 57.895 0.00 0.00 0.00 3.51
372 373 2.031919 TCAACTTCACCGCGCCAT 59.968 55.556 0.00 0.00 0.00 4.40
373 374 2.970324 GTCAACTTCACCGCGCCA 60.970 61.111 0.00 0.00 0.00 5.69
374 375 3.723348 GGTCAACTTCACCGCGCC 61.723 66.667 0.00 0.00 0.00 6.53
375 376 0.947180 TAAGGTCAACTTCACCGCGC 60.947 55.000 0.00 0.00 40.64 6.86
376 377 0.788391 GTAAGGTCAACTTCACCGCG 59.212 55.000 0.00 0.00 40.64 6.46
377 378 2.067013 GAGTAAGGTCAACTTCACCGC 58.933 52.381 0.00 0.00 40.64 5.68
378 379 3.662247 AGAGTAAGGTCAACTTCACCG 57.338 47.619 0.00 0.00 40.64 4.94
379 380 4.448060 CGAAAGAGTAAGGTCAACTTCACC 59.552 45.833 0.00 0.00 40.64 4.02
380 381 4.448060 CCGAAAGAGTAAGGTCAACTTCAC 59.552 45.833 0.00 0.00 40.64 3.18
381 382 4.342951 TCCGAAAGAGTAAGGTCAACTTCA 59.657 41.667 0.00 0.00 40.64 3.02
382 383 4.685165 GTCCGAAAGAGTAAGGTCAACTTC 59.315 45.833 0.00 0.00 40.64 3.01
383 384 4.629092 GTCCGAAAGAGTAAGGTCAACTT 58.371 43.478 0.00 0.00 43.28 2.66
384 385 3.305199 CGTCCGAAAGAGTAAGGTCAACT 60.305 47.826 0.00 0.00 0.00 3.16
385 386 2.985139 CGTCCGAAAGAGTAAGGTCAAC 59.015 50.000 0.00 0.00 0.00 3.18
386 387 2.624838 ACGTCCGAAAGAGTAAGGTCAA 59.375 45.455 0.00 0.00 0.00 3.18
387 388 2.030540 CACGTCCGAAAGAGTAAGGTCA 60.031 50.000 0.00 0.00 0.00 4.02
388 389 2.030451 ACACGTCCGAAAGAGTAAGGTC 60.030 50.000 0.00 0.00 0.00 3.85
389 390 1.959282 ACACGTCCGAAAGAGTAAGGT 59.041 47.619 0.00 0.00 0.00 3.50
390 391 2.719426 ACACGTCCGAAAGAGTAAGG 57.281 50.000 0.00 0.00 0.00 2.69
391 392 3.159026 CGTACACGTCCGAAAGAGTAAG 58.841 50.000 0.00 0.00 34.11 2.34
392 393 2.095768 CCGTACACGTCCGAAAGAGTAA 60.096 50.000 0.58 0.00 37.74 2.24
393 394 1.464608 CCGTACACGTCCGAAAGAGTA 59.535 52.381 0.58 0.00 37.74 2.59
394 395 0.239347 CCGTACACGTCCGAAAGAGT 59.761 55.000 0.58 0.00 37.74 3.24
395 396 0.239347 ACCGTACACGTCCGAAAGAG 59.761 55.000 0.58 0.00 37.74 2.85
396 397 0.040157 CACCGTACACGTCCGAAAGA 60.040 55.000 0.58 0.00 37.74 2.52
397 398 1.611592 GCACCGTACACGTCCGAAAG 61.612 60.000 0.58 0.00 37.74 2.62
398 399 1.661197 GCACCGTACACGTCCGAAA 60.661 57.895 0.58 0.00 37.74 3.46
399 400 2.050168 GCACCGTACACGTCCGAA 60.050 61.111 0.58 0.00 37.74 4.30
400 401 2.736343 CTTGCACCGTACACGTCCGA 62.736 60.000 0.58 0.00 37.74 4.55
1269 1302 1.289160 CTTGGAGATTGGGTCCAGGA 58.711 55.000 0.00 0.00 45.00 3.86
1378 1411 3.077556 ACCTCCGCCGCTCTCATT 61.078 61.111 0.00 0.00 0.00 2.57
1630 1663 4.820897 AGTTTCGTATCATGAGCACTGAA 58.179 39.130 0.09 7.31 0.00 3.02
1651 1684 7.504924 TTGTTCAGTACTTTCCCAACAATAG 57.495 36.000 0.00 0.00 30.70 1.73
1788 1822 8.375493 TGGACTGAGTAACTAATTATTCACCT 57.625 34.615 0.00 0.00 33.44 4.00
1797 1831 6.732896 ATCGGATTGGACTGAGTAACTAAT 57.267 37.500 0.00 0.00 0.00 1.73
2228 2262 3.053917 AGGTAAAAATCACGGCCTATGGT 60.054 43.478 0.00 0.00 0.00 3.55
3091 3126 4.770795 ACTGATAAAGAACAGCGCCTAAT 58.229 39.130 2.29 0.00 37.61 1.73
3378 3413 5.786311 TGCCTGAATTTTTCATCCTTGAAG 58.214 37.500 0.00 0.00 42.60 3.02
3459 3494 7.033530 AGGTGATTCTCAAGACTATCGTAAG 57.966 40.000 0.00 0.00 0.00 2.34
3470 3505 4.446719 GCAAAGCAAAAGGTGATTCTCAAG 59.553 41.667 0.00 0.00 33.79 3.02
3604 3640 7.671302 TCACAACTAGCACTCTTAAATTCTCT 58.329 34.615 0.00 0.00 0.00 3.10
4164 4202 6.994221 AGGGGATGTTTATCTACTGATTACG 58.006 40.000 0.00 0.00 34.32 3.18
4268 4306 6.839820 ACTTTCTTAAACTCTTGGTACACG 57.160 37.500 0.00 0.00 39.29 4.49
4296 4334 9.778479 ATGTAGCATTATTGGGTACTACCTATA 57.222 33.333 5.19 1.83 39.36 1.31
4309 4347 9.031360 AGTGTTTACGTAGATGTAGCATTATTG 57.969 33.333 0.00 0.00 0.00 1.90
4310 4348 9.595823 AAGTGTTTACGTAGATGTAGCATTATT 57.404 29.630 0.00 0.00 0.00 1.40
4312 4350 9.507280 GTAAGTGTTTACGTAGATGTAGCATTA 57.493 33.333 0.00 0.00 30.68 1.90
4313 4351 8.403606 GTAAGTGTTTACGTAGATGTAGCATT 57.596 34.615 0.00 0.00 30.68 3.56
4314 4352 7.982371 GTAAGTGTTTACGTAGATGTAGCAT 57.018 36.000 0.00 0.00 30.68 3.79
4327 4365 6.510746 ACGTAAGGTTTCGTAAGTGTTTAC 57.489 37.500 0.00 0.00 46.39 2.01
4335 4373 4.447389 GGCAAGTTACGTAAGGTTTCGTAA 59.553 41.667 8.60 9.44 45.70 3.18
4336 4374 3.987220 GGCAAGTTACGTAAGGTTTCGTA 59.013 43.478 8.60 0.00 46.39 3.43
4337 4375 2.802247 GGCAAGTTACGTAAGGTTTCGT 59.198 45.455 8.60 0.09 46.39 3.85
4338 4376 3.062042 AGGCAAGTTACGTAAGGTTTCG 58.938 45.455 8.60 0.00 46.39 3.46
4339 4377 6.018016 TGTTTAGGCAAGTTACGTAAGGTTTC 60.018 38.462 8.60 0.10 46.39 2.78
4340 4378 5.821995 TGTTTAGGCAAGTTACGTAAGGTTT 59.178 36.000 8.60 1.17 46.39 3.27
4341 4379 5.367302 TGTTTAGGCAAGTTACGTAAGGTT 58.633 37.500 8.60 2.59 46.39 3.50
4342 4380 4.959723 TGTTTAGGCAAGTTACGTAAGGT 58.040 39.130 8.60 0.00 46.39 3.50
4343 4381 5.927954 TTGTTTAGGCAAGTTACGTAAGG 57.072 39.130 8.60 2.80 46.39 2.69
4345 4383 8.623030 AGAATTTTGTTTAGGCAAGTTACGTAA 58.377 29.630 3.29 3.29 0.00 3.18
4346 4384 8.156994 AGAATTTTGTTTAGGCAAGTTACGTA 57.843 30.769 0.00 0.00 0.00 3.57
4347 4385 7.012989 AGAGAATTTTGTTTAGGCAAGTTACGT 59.987 33.333 0.00 0.00 0.00 3.57
4348 4386 7.360361 AGAGAATTTTGTTTAGGCAAGTTACG 58.640 34.615 0.00 0.00 0.00 3.18
4349 4387 7.808381 GGAGAGAATTTTGTTTAGGCAAGTTAC 59.192 37.037 0.00 0.00 0.00 2.50
4350 4388 7.039993 GGGAGAGAATTTTGTTTAGGCAAGTTA 60.040 37.037 0.00 0.00 0.00 2.24
4351 4389 6.239317 GGGAGAGAATTTTGTTTAGGCAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
4352 4390 5.243954 GGGAGAGAATTTTGTTTAGGCAAGT 59.756 40.000 0.00 0.00 0.00 3.16
4353 4391 5.336770 GGGGAGAGAATTTTGTTTAGGCAAG 60.337 44.000 0.00 0.00 0.00 4.01
4354 4392 4.526650 GGGGAGAGAATTTTGTTTAGGCAA 59.473 41.667 0.00 0.00 0.00 4.52
4355 4393 4.086457 GGGGAGAGAATTTTGTTTAGGCA 58.914 43.478 0.00 0.00 0.00 4.75
4356 4394 3.447586 GGGGGAGAGAATTTTGTTTAGGC 59.552 47.826 0.00 0.00 0.00 3.93
4375 4413 3.200918 CCCGGTTAAAATCAGGGGG 57.799 57.895 0.00 0.00 36.82 5.40
4377 4415 0.333652 ACCCCCGGTTAAAATCAGGG 59.666 55.000 0.00 2.41 39.44 4.45
4378 4416 1.470051 CACCCCCGGTTAAAATCAGG 58.530 55.000 0.00 0.00 31.02 3.86
4379 4417 1.470051 CCACCCCCGGTTAAAATCAG 58.530 55.000 0.00 0.00 31.02 2.90
4380 4418 0.039911 CCCACCCCCGGTTAAAATCA 59.960 55.000 0.00 0.00 31.02 2.57
4381 4419 1.324740 GCCCACCCCCGGTTAAAATC 61.325 60.000 0.00 0.00 31.02 2.17
4382 4420 1.305465 GCCCACCCCCGGTTAAAAT 60.305 57.895 0.00 0.00 31.02 1.82
4383 4421 2.117858 GCCCACCCCCGGTTAAAA 59.882 61.111 0.00 0.00 31.02 1.52
4384 4422 3.982111 GGCCCACCCCCGGTTAAA 61.982 66.667 0.00 0.00 31.02 1.52
4407 4445 1.004758 TGGGATTGGAGAGAGGGGG 59.995 63.158 0.00 0.00 0.00 5.40
4408 4446 1.704007 GCTGGGATTGGAGAGAGGGG 61.704 65.000 0.00 0.00 0.00 4.79
4409 4447 0.693767 AGCTGGGATTGGAGAGAGGG 60.694 60.000 0.00 0.00 0.00 4.30
4410 4448 0.758123 GAGCTGGGATTGGAGAGAGG 59.242 60.000 0.00 0.00 0.00 3.69
4411 4449 1.138661 GTGAGCTGGGATTGGAGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
4412 4450 1.198713 GTGAGCTGGGATTGGAGAGA 58.801 55.000 0.00 0.00 0.00 3.10
4413 4451 0.179936 GGTGAGCTGGGATTGGAGAG 59.820 60.000 0.00 0.00 0.00 3.20
4414 4452 1.617018 CGGTGAGCTGGGATTGGAGA 61.617 60.000 0.00 0.00 0.00 3.71
4415 4453 1.153289 CGGTGAGCTGGGATTGGAG 60.153 63.158 0.00 0.00 0.00 3.86
4416 4454 1.918293 ACGGTGAGCTGGGATTGGA 60.918 57.895 0.00 0.00 0.00 3.53
4417 4455 1.746615 CACGGTGAGCTGGGATTGG 60.747 63.158 0.74 0.00 0.00 3.16
4418 4456 0.606401 AACACGGTGAGCTGGGATTG 60.606 55.000 16.29 0.00 0.00 2.67
4419 4457 0.606401 CAACACGGTGAGCTGGGATT 60.606 55.000 16.29 0.00 0.00 3.01
4420 4458 1.003355 CAACACGGTGAGCTGGGAT 60.003 57.895 16.29 0.00 0.00 3.85
4421 4459 2.425592 CAACACGGTGAGCTGGGA 59.574 61.111 16.29 0.00 0.00 4.37
4422 4460 3.357079 GCAACACGGTGAGCTGGG 61.357 66.667 16.29 0.00 0.00 4.45
4423 4461 2.281070 AGCAACACGGTGAGCTGG 60.281 61.111 24.11 7.99 32.90 4.85
4424 4462 1.439353 AACAGCAACACGGTGAGCTG 61.439 55.000 35.21 35.21 46.47 4.24
4425 4463 0.748005 AAACAGCAACACGGTGAGCT 60.748 50.000 20.95 20.95 46.47 4.09
4426 4464 0.941542 TAAACAGCAACACGGTGAGC 59.058 50.000 16.29 17.27 46.47 4.26
4427 4465 1.070843 CGTAAACAGCAACACGGTGAG 60.071 52.381 16.29 8.00 46.47 3.51
4428 4466 0.931702 CGTAAACAGCAACACGGTGA 59.068 50.000 16.29 0.00 46.47 4.02
4430 4468 1.371595 AACGTAAACAGCAACACGGT 58.628 45.000 0.00 0.00 38.67 4.83
4431 4469 3.589061 TTAACGTAAACAGCAACACGG 57.411 42.857 0.00 0.00 38.67 4.94
4432 4470 5.112937 GTGAATTAACGTAAACAGCAACACG 59.887 40.000 0.00 0.00 40.15 4.49
4433 4471 5.112937 CGTGAATTAACGTAAACAGCAACAC 59.887 40.000 7.22 0.00 38.74 3.32
4434 4472 5.199000 CGTGAATTAACGTAAACAGCAACA 58.801 37.500 7.22 0.00 38.74 3.33
4435 4473 5.702883 CGTGAATTAACGTAAACAGCAAC 57.297 39.130 7.22 0.00 38.74 4.17
4456 4494 6.005289 GCTACATCTACGTAAAACACAAACG 58.995 40.000 0.00 0.00 42.17 3.60
4457 4495 6.879962 TGCTACATCTACGTAAAACACAAAC 58.120 36.000 0.00 0.00 0.00 2.93
4458 4496 7.411049 CGATGCTACATCTACGTAAAACACAAA 60.411 37.037 6.06 0.00 0.00 2.83
4459 4497 6.034150 CGATGCTACATCTACGTAAAACACAA 59.966 38.462 6.06 0.00 0.00 3.33
4460 4498 5.513849 CGATGCTACATCTACGTAAAACACA 59.486 40.000 6.06 0.00 0.00 3.72
4461 4499 5.553952 GCGATGCTACATCTACGTAAAACAC 60.554 44.000 6.06 0.00 0.00 3.32
4462 4500 4.501559 GCGATGCTACATCTACGTAAAACA 59.498 41.667 6.06 0.00 0.00 2.83
4463 4501 4.738740 AGCGATGCTACATCTACGTAAAAC 59.261 41.667 6.06 0.00 36.99 2.43
4464 4502 4.738252 CAGCGATGCTACATCTACGTAAAA 59.262 41.667 6.06 0.00 36.40 1.52
4465 4503 4.035909 TCAGCGATGCTACATCTACGTAAA 59.964 41.667 0.00 0.00 36.40 2.01
4466 4504 3.562557 TCAGCGATGCTACATCTACGTAA 59.437 43.478 0.00 0.00 36.40 3.18
4467 4505 3.135994 TCAGCGATGCTACATCTACGTA 58.864 45.455 0.00 0.00 36.40 3.57
4468 4506 1.947456 TCAGCGATGCTACATCTACGT 59.053 47.619 0.00 0.00 36.40 3.57
4469 4507 2.579541 CTCAGCGATGCTACATCTACG 58.420 52.381 0.00 0.00 36.40 3.51
4470 4508 2.294791 ACCTCAGCGATGCTACATCTAC 59.705 50.000 0.00 0.00 36.40 2.59
4471 4509 2.587522 ACCTCAGCGATGCTACATCTA 58.412 47.619 0.00 0.00 36.40 1.98
4472 4510 1.407936 ACCTCAGCGATGCTACATCT 58.592 50.000 0.00 0.00 36.40 2.90
4473 4511 2.294791 ACTACCTCAGCGATGCTACATC 59.705 50.000 0.00 0.00 36.40 3.06
4474 4512 2.311463 ACTACCTCAGCGATGCTACAT 58.689 47.619 0.00 0.00 36.40 2.29
4475 4513 1.763968 ACTACCTCAGCGATGCTACA 58.236 50.000 0.00 0.00 36.40 2.74
4476 4514 2.030981 GGTACTACCTCAGCGATGCTAC 60.031 54.545 0.00 0.00 33.97 3.58
4477 4515 2.228059 GGTACTACCTCAGCGATGCTA 58.772 52.381 0.00 0.00 33.97 3.49
4478 4516 1.033574 GGTACTACCTCAGCGATGCT 58.966 55.000 0.00 0.00 35.45 3.79
4479 4517 3.571741 GGTACTACCTCAGCGATGC 57.428 57.895 0.00 0.00 34.73 3.91
4489 4527 5.015515 AGTTGAACTCCACTAGGTACTACC 58.984 45.833 0.00 0.00 41.75 3.18
4490 4528 6.183360 GCTAGTTGAACTCCACTAGGTACTAC 60.183 46.154 15.87 0.24 41.75 2.73
4491 4529 5.884792 GCTAGTTGAACTCCACTAGGTACTA 59.115 44.000 15.87 0.00 41.75 1.82
4492 4530 4.705991 GCTAGTTGAACTCCACTAGGTACT 59.294 45.833 15.87 0.00 46.37 2.73
4493 4531 4.438472 CGCTAGTTGAACTCCACTAGGTAC 60.438 50.000 15.87 3.46 34.40 3.34
4494 4532 3.693085 CGCTAGTTGAACTCCACTAGGTA 59.307 47.826 15.87 0.00 34.40 3.08
4495 4533 2.492484 CGCTAGTTGAACTCCACTAGGT 59.508 50.000 15.87 0.00 34.40 3.08
4496 4534 2.753452 TCGCTAGTTGAACTCCACTAGG 59.247 50.000 15.87 8.89 34.40 3.02
4497 4535 4.640789 ATCGCTAGTTGAACTCCACTAG 57.359 45.455 0.00 11.75 36.27 2.57
4498 4536 5.401531 AAATCGCTAGTTGAACTCCACTA 57.598 39.130 0.00 0.00 0.00 2.74
4499 4537 3.963428 AATCGCTAGTTGAACTCCACT 57.037 42.857 0.00 0.00 0.00 4.00
4500 4538 4.451096 TCAAAATCGCTAGTTGAACTCCAC 59.549 41.667 0.00 0.00 0.00 4.02
4501 4539 4.637276 TCAAAATCGCTAGTTGAACTCCA 58.363 39.130 0.00 0.00 0.00 3.86
4502 4540 5.803020 ATCAAAATCGCTAGTTGAACTCC 57.197 39.130 0.00 0.00 35.07 3.85
4503 4541 6.018669 CCCTATCAAAATCGCTAGTTGAACTC 60.019 42.308 0.00 0.00 35.07 3.01
4504 4542 5.817816 CCCTATCAAAATCGCTAGTTGAACT 59.182 40.000 2.37 2.37 35.07 3.01
4505 4543 5.815740 TCCCTATCAAAATCGCTAGTTGAAC 59.184 40.000 0.00 0.00 35.07 3.18
4506 4544 5.984725 TCCCTATCAAAATCGCTAGTTGAA 58.015 37.500 0.00 0.00 35.07 2.69
4507 4545 5.607939 TCCCTATCAAAATCGCTAGTTGA 57.392 39.130 0.00 0.00 35.83 3.18
4508 4546 6.487103 GTTTCCCTATCAAAATCGCTAGTTG 58.513 40.000 0.00 0.00 0.00 3.16
4509 4547 5.293569 CGTTTCCCTATCAAAATCGCTAGTT 59.706 40.000 0.00 0.00 0.00 2.24
4510 4548 4.809426 CGTTTCCCTATCAAAATCGCTAGT 59.191 41.667 0.00 0.00 0.00 2.57
4511 4549 4.809426 ACGTTTCCCTATCAAAATCGCTAG 59.191 41.667 0.00 0.00 0.00 3.42
4512 4550 4.761975 ACGTTTCCCTATCAAAATCGCTA 58.238 39.130 0.00 0.00 0.00 4.26
4513 4551 3.606687 ACGTTTCCCTATCAAAATCGCT 58.393 40.909 0.00 0.00 0.00 4.93
4514 4552 4.351131 AACGTTTCCCTATCAAAATCGC 57.649 40.909 0.00 0.00 0.00 4.58
4515 4553 6.178239 AGAAACGTTTCCCTATCAAAATCG 57.822 37.500 31.87 0.00 37.92 3.34
4516 4554 8.129211 CCATAGAAACGTTTCCCTATCAAAATC 58.871 37.037 31.87 8.37 37.92 2.17
4517 4555 7.068226 CCCATAGAAACGTTTCCCTATCAAAAT 59.932 37.037 31.87 15.33 37.92 1.82
4518 4556 6.376018 CCCATAGAAACGTTTCCCTATCAAAA 59.624 38.462 31.87 10.94 37.92 2.44
4519 4557 5.883673 CCCATAGAAACGTTTCCCTATCAAA 59.116 40.000 31.87 11.84 37.92 2.69
4520 4558 5.045432 ACCCATAGAAACGTTTCCCTATCAA 60.045 40.000 31.87 13.04 37.92 2.57
4521 4559 4.472108 ACCCATAGAAACGTTTCCCTATCA 59.528 41.667 31.87 14.27 37.92 2.15
4522 4560 5.032327 ACCCATAGAAACGTTTCCCTATC 57.968 43.478 31.87 11.91 37.92 2.08
4565 4614 2.885644 CTCAATCGCGTGGGACCG 60.886 66.667 5.77 0.00 0.00 4.79
4566 4615 2.511600 CCTCAATCGCGTGGGACC 60.512 66.667 5.77 0.00 0.00 4.46
4568 4617 4.467084 GGCCTCAATCGCGTGGGA 62.467 66.667 5.77 0.72 0.00 4.37
4569 4618 4.776322 TGGCCTCAATCGCGTGGG 62.776 66.667 5.77 0.00 0.00 4.61
4601 4651 2.266055 GAAGGGGCAGGTGAGTCG 59.734 66.667 0.00 0.00 0.00 4.18
4605 4655 1.213296 GATAAGGAAGGGGCAGGTGA 58.787 55.000 0.00 0.00 0.00 4.02
4617 4667 5.074115 GGATCGAGAGGAAGAAGATAAGGA 58.926 45.833 0.00 0.00 0.00 3.36
4634 4684 2.860817 TTTAGGAGGAAGGGGATCGA 57.139 50.000 0.00 0.00 0.00 3.59
4641 4691 5.453198 GCTGAGAGAGAATTTAGGAGGAAGG 60.453 48.000 0.00 0.00 0.00 3.46
4644 4712 4.648762 CAGCTGAGAGAGAATTTAGGAGGA 59.351 45.833 8.42 0.00 0.00 3.71
4692 4760 2.112691 TCTGAAGGAGGAAGAGGAAGGT 59.887 50.000 0.00 0.00 0.00 3.50
4695 4763 4.264577 TGAGATCTGAAGGAGGAAGAGGAA 60.265 45.833 0.00 0.00 0.00 3.36
4712 4780 1.300542 GCTAGCTGGCGGTGAGATC 60.301 63.158 6.22 0.00 0.00 2.75
4761 4829 0.682209 GAAGTGGGCATGGCACTGAT 60.682 55.000 22.06 8.39 30.56 2.90
4766 4834 0.899717 GGAAAGAAGTGGGCATGGCA 60.900 55.000 22.06 4.40 0.00 4.92
4771 4839 0.823356 GCAGTGGAAAGAAGTGGGCA 60.823 55.000 0.00 0.00 0.00 5.36
4792 4860 3.435186 GAAGGAACCTGCAGCCGC 61.435 66.667 8.66 0.00 39.24 6.53
4850 4920 0.747255 GTTCCAGCAGCTCTCGGATA 59.253 55.000 0.84 0.00 0.00 2.59
4870 4940 0.324368 AGTAGCATCTCCGGTGGACA 60.324 55.000 0.00 0.00 0.00 4.02
4918 4988 1.888512 GGAAGAAGATGGTTGCAGCAA 59.111 47.619 2.83 2.83 0.00 3.91
4959 5029 0.321564 CAACATCGGTGGAGGAGCAA 60.322 55.000 0.00 0.00 0.00 3.91
4995 5065 5.190933 TTTCGAATCGAACAGTCGTAGCTC 61.191 45.833 18.30 0.00 45.64 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.