Multiple sequence alignment - TraesCS1A01G136100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G136100 chr1A 100.000 4222 0 0 1 4222 213256701 213252480 0.000000e+00 7797.0
1 TraesCS1A01G136100 chr1D 96.186 2963 92 12 660 3614 174114302 174111353 0.000000e+00 4826.0
2 TraesCS1A01G136100 chr1D 93.355 301 19 1 3922 4222 174111017 174110718 1.080000e-120 444.0
3 TraesCS1A01G136100 chr1D 94.949 99 3 1 3818 3916 174111169 174111073 2.030000e-33 154.0
4 TraesCS1A01G136100 chr1D 97.917 48 1 0 3611 3658 174111215 174111168 2.710000e-12 84.2
5 TraesCS1A01G136100 chr1B 95.626 1829 55 10 655 2469 262064609 262066426 0.000000e+00 2911.0
6 TraesCS1A01G136100 chr1B 93.066 1197 31 10 2468 3658 262066484 262067634 0.000000e+00 1703.0
7 TraesCS1A01G136100 chr1B 95.865 266 10 1 3957 4222 262067872 262068136 3.020000e-116 429.0
8 TraesCS1A01G136100 chr1B 95.960 99 2 1 3818 3916 262067633 262067729 4.370000e-35 159.0
9 TraesCS1A01G136100 chr4D 90.774 672 48 11 1 660 342884363 342885032 0.000000e+00 885.0
10 TraesCS1A01G136100 chr4D 90.208 674 51 12 1 661 111707824 111707153 0.000000e+00 865.0
11 TraesCS1A01G136100 chr7D 90.342 673 53 9 1 661 64523881 64523209 0.000000e+00 872.0
12 TraesCS1A01G136100 chr7D 90.193 673 53 10 1 660 210390581 210391253 0.000000e+00 865.0
13 TraesCS1A01G136100 chr7D 90.059 674 53 8 1 661 177948162 177948834 0.000000e+00 861.0
14 TraesCS1A01G136100 chr5D 90.103 677 51 10 1 661 378904724 378905400 0.000000e+00 865.0
15 TraesCS1A01G136100 chr5D 93.939 165 8 1 3657 3819 6083526 6083362 9.060000e-62 248.0
16 TraesCS1A01G136100 chr7B 90.059 674 54 8 1 661 528187092 528186419 0.000000e+00 861.0
17 TraesCS1A01G136100 chr7B 91.257 183 12 3 3649 3827 412800304 412800486 3.260000e-61 246.0
18 TraesCS1A01G136100 chr2D 89.911 674 54 11 1 661 450946966 450946294 0.000000e+00 856.0
19 TraesCS1A01G136100 chr2D 79.703 202 37 4 1329 1530 323561648 323561845 4.400000e-30 143.0
20 TraesCS1A01G136100 chr4A 89.630 675 56 11 1 661 726857365 726856691 0.000000e+00 846.0
21 TraesCS1A01G136100 chr4A 95.152 165 6 1 3657 3819 416636821 416636657 4.190000e-65 259.0
22 TraesCS1A01G136100 chr4A 81.081 259 39 7 2982 3234 694762067 694761813 9.260000e-47 198.0
23 TraesCS1A01G136100 chr5A 93.491 169 9 2 3654 3820 44990697 44990865 2.520000e-62 250.0
24 TraesCS1A01G136100 chr2A 93.939 165 8 1 3657 3819 307444324 307444160 9.060000e-62 248.0
25 TraesCS1A01G136100 chr2A 77.372 274 53 8 1260 1530 406997157 406997424 2.030000e-33 154.0
26 TraesCS1A01G136100 chr2A 77.372 274 53 8 1260 1530 407125654 407125921 2.030000e-33 154.0
27 TraesCS1A01G136100 chr6D 92.486 173 11 1 3657 3827 392278577 392278749 3.260000e-61 246.0
28 TraesCS1A01G136100 chr6D 88.947 190 16 4 3657 3842 392896975 392897163 3.280000e-56 230.0
29 TraesCS1A01G136100 chr4B 93.939 165 7 2 3657 3819 549133717 549133880 3.260000e-61 246.0
30 TraesCS1A01G136100 chr4B 91.525 177 12 2 3655 3829 592148115 592147940 1.520000e-59 241.0
31 TraesCS1A01G136100 chr2B 81.765 170 31 0 1361 1530 391523628 391523797 4.400000e-30 143.0
32 TraesCS1A01G136100 chr2B 81.646 158 29 0 1376 1533 391493408 391493251 9.520000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G136100 chr1A 213252480 213256701 4221 True 7797.00 7797 100.00000 1 4222 1 chr1A.!!$R1 4221
1 TraesCS1A01G136100 chr1D 174110718 174114302 3584 True 1377.05 4826 95.60175 660 4222 4 chr1D.!!$R1 3562
2 TraesCS1A01G136100 chr1B 262064609 262068136 3527 False 1300.50 2911 95.12925 655 4222 4 chr1B.!!$F1 3567
3 TraesCS1A01G136100 chr4D 342884363 342885032 669 False 885.00 885 90.77400 1 660 1 chr4D.!!$F1 659
4 TraesCS1A01G136100 chr4D 111707153 111707824 671 True 865.00 865 90.20800 1 661 1 chr4D.!!$R1 660
5 TraesCS1A01G136100 chr7D 64523209 64523881 672 True 872.00 872 90.34200 1 661 1 chr7D.!!$R1 660
6 TraesCS1A01G136100 chr7D 210390581 210391253 672 False 865.00 865 90.19300 1 660 1 chr7D.!!$F2 659
7 TraesCS1A01G136100 chr7D 177948162 177948834 672 False 861.00 861 90.05900 1 661 1 chr7D.!!$F1 660
8 TraesCS1A01G136100 chr5D 378904724 378905400 676 False 865.00 865 90.10300 1 661 1 chr5D.!!$F1 660
9 TraesCS1A01G136100 chr7B 528186419 528187092 673 True 861.00 861 90.05900 1 661 1 chr7B.!!$R1 660
10 TraesCS1A01G136100 chr2D 450946294 450946966 672 True 856.00 856 89.91100 1 661 1 chr2D.!!$R1 660
11 TraesCS1A01G136100 chr4A 726856691 726857365 674 True 846.00 846 89.63000 1 661 1 chr4A.!!$R3 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 760 0.109458 CCGCACTCGCACACTACTTA 60.109 55.0 0.00 0.0 38.4 2.24 F
1919 1953 0.250901 ATAAGGCGGGCATGGATGTC 60.251 55.0 3.78 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 1959 0.515127 AACACACACACACACACACG 59.485 50.0 0.0 0.0 0.0 4.49 R
3318 3417 0.463833 GGGACAATAGGAACAGGCGG 60.464 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.366366 CGGGTCCTTCAAGTGTCGT 59.634 57.895 0.00 0.00 0.00 4.34
89 90 2.821679 CTTCTTCGCCCCCTTCACCC 62.822 65.000 0.00 0.00 0.00 4.61
172 173 1.968493 GATCCAATGATGCAGCCCAAT 59.032 47.619 0.00 0.00 0.00 3.16
179 180 0.820891 GATGCAGCCCAATCATCGGT 60.821 55.000 0.00 0.00 0.00 4.69
198 199 3.508762 GGTCTCGAGAATTAAGAACGCA 58.491 45.455 18.55 0.00 0.00 5.24
216 217 0.246635 CACGACAACGGAGAGGGAAT 59.753 55.000 0.00 0.00 44.46 3.01
263 264 7.021998 AGAAAGGGAGTTTATTTACTGCTCT 57.978 36.000 0.00 0.00 36.78 4.09
284 285 6.757010 GCTCTCTCGATGTATTGTTTCCTTTA 59.243 38.462 0.00 0.00 0.00 1.85
330 331 7.067008 CCATGAGTTAAGGTAAGGTTAATGTGG 59.933 40.741 0.00 0.00 0.00 4.17
492 493 7.605691 CCAGTATGAAAAGTTCTGATCTGTTCT 59.394 37.037 15.97 7.54 39.69 3.01
508 509 8.469200 TGATCTGTTCTGATTTCTTTTGTTGTT 58.531 29.630 0.00 0.00 0.00 2.83
512 513 8.238481 TGTTCTGATTTCTTTTGTTGTTTGAC 57.762 30.769 0.00 0.00 0.00 3.18
536 537 2.489059 GTGACGCGAAAATAAACCGAC 58.511 47.619 15.93 0.00 0.00 4.79
661 681 7.930865 ACCAACTGCTCATTAGAAATAGAGATC 59.069 37.037 0.00 0.00 0.00 2.75
662 682 8.149647 CCAACTGCTCATTAGAAATAGAGATCT 58.850 37.037 0.00 0.00 0.00 2.75
663 683 9.545105 CAACTGCTCATTAGAAATAGAGATCTT 57.455 33.333 0.00 0.00 0.00 2.40
679 699 0.179040 TCTTTTTGGTCGAACGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
738 759 1.372997 CCGCACTCGCACACTACTT 60.373 57.895 0.00 0.00 38.40 2.24
739 760 0.109458 CCGCACTCGCACACTACTTA 60.109 55.000 0.00 0.00 38.40 2.24
808 830 3.125573 CGAGGTCTCGTCTCCGCA 61.126 66.667 11.76 0.00 46.99 5.69
875 905 1.134367 TCCGCTATTCACTCGTTGGAG 59.866 52.381 0.00 0.00 46.13 3.86
942 972 2.969821 TGCAGGTTTGTTGGTCCTAT 57.030 45.000 0.00 0.00 0.00 2.57
1601 1631 9.253832 TCAATTATTTCATCTTTATGGTGGTGT 57.746 29.630 0.00 0.00 33.61 4.16
1635 1665 8.938801 ATGCACTGGAAAATGGTATTGATATA 57.061 30.769 0.00 0.00 0.00 0.86
1636 1666 8.938801 TGCACTGGAAAATGGTATTGATATAT 57.061 30.769 0.00 0.00 0.00 0.86
1851 1885 2.416547 CGACTTCATTGGTTGCGAATCT 59.583 45.455 0.00 0.00 0.00 2.40
1868 1902 0.906775 TCTGGAGACATCAGCATGCA 59.093 50.000 21.98 0.00 41.51 3.96
1876 1910 1.278413 ACATCAGCATGCACTGTCTCT 59.722 47.619 21.98 0.00 38.84 3.10
1919 1953 0.250901 ATAAGGCGGGCATGGATGTC 60.251 55.000 3.78 0.00 0.00 3.06
1925 1959 1.065551 GCGGGCATGGATGTCTTTTAC 59.934 52.381 0.00 0.00 31.84 2.01
1932 1966 4.711721 CATGGATGTCTTTTACGTGTGTG 58.288 43.478 0.00 0.00 0.00 3.82
1933 1967 3.799366 TGGATGTCTTTTACGTGTGTGT 58.201 40.909 0.00 0.00 0.00 3.72
1934 1968 3.558006 TGGATGTCTTTTACGTGTGTGTG 59.442 43.478 0.00 0.00 0.00 3.82
1935 1969 3.558418 GGATGTCTTTTACGTGTGTGTGT 59.442 43.478 0.00 0.00 0.00 3.72
1936 1970 4.514506 GATGTCTTTTACGTGTGTGTGTG 58.485 43.478 0.00 0.00 0.00 3.82
1937 1971 3.327626 TGTCTTTTACGTGTGTGTGTGT 58.672 40.909 0.00 0.00 0.00 3.72
1938 1972 3.123790 TGTCTTTTACGTGTGTGTGTGTG 59.876 43.478 0.00 0.00 0.00 3.82
1939 1973 3.123959 GTCTTTTACGTGTGTGTGTGTGT 59.876 43.478 0.00 0.00 0.00 3.72
1944 1978 0.515127 CGTGTGTGTGTGTGTGTGTT 59.485 50.000 0.00 0.00 0.00 3.32
2046 2080 4.273235 TGCACTCATGTTCAACACTAACTG 59.727 41.667 0.00 0.00 0.00 3.16
2105 2139 4.020307 GGGGTGTTTCAAATGAACCATGAT 60.020 41.667 0.00 0.00 33.13 2.45
2116 2150 3.972133 TGAACCATGATGCCTTGAGAAT 58.028 40.909 0.00 0.00 0.00 2.40
2196 2230 8.733458 ACATAATGCATATGATGGTGATGTTAC 58.267 33.333 6.97 0.00 43.52 2.50
2229 2263 7.327975 TCGGTAGCTACAATATATGGAAATGG 58.672 38.462 24.75 0.00 0.00 3.16
2303 2337 4.655649 ACTAATGATCATGGCTCTGTACCA 59.344 41.667 9.46 0.00 42.61 3.25
2479 2572 8.784994 AGGAGCACGGATTATATATAGTATTCG 58.215 37.037 4.28 4.28 0.00 3.34
2513 2606 5.331756 GCGATAATTGCGGACATTTGAAATG 60.332 40.000 15.82 15.82 0.00 2.32
2570 2663 4.956700 CCTCTACCCAATCTGTCTTGAGTA 59.043 45.833 0.00 0.00 0.00 2.59
2584 2677 5.418840 TGTCTTGAGTATGACATGCTACAGA 59.581 40.000 5.98 7.82 36.43 3.41
2803 2902 4.481930 TTTTGGTATGTTTGTGCTCTCG 57.518 40.909 0.00 0.00 0.00 4.04
2823 2922 3.063452 TCGCGATAGGCAAAAGTTCAATC 59.937 43.478 3.71 0.00 43.84 2.67
2909 3008 5.411053 GCTTCTGTACTCTTCTCATGCTTTT 59.589 40.000 0.00 0.00 0.00 2.27
2931 3030 8.655651 TTTTTGATTATGTTGGTTTTCAGTCC 57.344 30.769 0.00 0.00 0.00 3.85
3061 3160 0.328258 ATCGGCTACACCTTTGGCTT 59.672 50.000 0.00 0.00 35.61 4.35
3117 3216 0.761802 CCCCTATGGAGCTGGAGTTC 59.238 60.000 0.00 0.00 35.39 3.01
3244 3343 1.078848 GAGCCAGCAGATGAACCGT 60.079 57.895 0.00 0.00 0.00 4.83
3318 3417 2.352127 GCCATTGTTTCCTCTTCAGCAC 60.352 50.000 0.00 0.00 0.00 4.40
3394 3493 9.778741 ATTGTTGGAATAGTCATATAATCACGT 57.221 29.630 0.00 0.00 0.00 4.49
3460 3559 4.468153 GTCCATTTGTAAAATAAGCCCCCA 59.532 41.667 0.00 0.00 0.00 4.96
3470 3569 1.286305 TAAGCCCCCATCTGGAACCC 61.286 60.000 0.00 0.00 37.39 4.11
3476 3575 1.450312 CCATCTGGAACCCGTGAGC 60.450 63.158 0.00 0.00 37.39 4.26
3545 3644 5.239359 TGCATTTCAATCAGATGCTACAC 57.761 39.130 8.73 0.00 44.84 2.90
3651 3891 5.201910 TGTTTTTCGTATGAAGAGCGTTTG 58.798 37.500 0.00 0.00 35.06 2.93
3656 3896 5.412526 TCGTATGAAGAGCGTTTGTTTTT 57.587 34.783 0.00 0.00 0.00 1.94
3657 3897 6.528014 TCGTATGAAGAGCGTTTGTTTTTA 57.472 33.333 0.00 0.00 0.00 1.52
3658 3898 6.357198 TCGTATGAAGAGCGTTTGTTTTTAC 58.643 36.000 0.00 0.00 0.00 2.01
3659 3899 6.201425 TCGTATGAAGAGCGTTTGTTTTTACT 59.799 34.615 0.00 0.00 0.00 2.24
3660 3900 6.515340 CGTATGAAGAGCGTTTGTTTTTACTC 59.485 38.462 0.00 0.00 0.00 2.59
3661 3901 5.804692 TGAAGAGCGTTTGTTTTTACTCA 57.195 34.783 0.00 0.00 0.00 3.41
3662 3902 5.565695 TGAAGAGCGTTTGTTTTTACTCAC 58.434 37.500 0.00 0.00 0.00 3.51
3663 3903 5.353123 TGAAGAGCGTTTGTTTTTACTCACT 59.647 36.000 0.00 0.00 0.00 3.41
3664 3904 5.405331 AGAGCGTTTGTTTTTACTCACTC 57.595 39.130 0.00 0.00 0.00 3.51
3665 3905 4.272748 AGAGCGTTTGTTTTTACTCACTCC 59.727 41.667 0.00 0.00 0.00 3.85
3666 3906 3.001939 AGCGTTTGTTTTTACTCACTCCG 59.998 43.478 0.00 0.00 0.00 4.63
3667 3907 3.242511 GCGTTTGTTTTTACTCACTCCGT 60.243 43.478 0.00 0.00 0.00 4.69
3668 3908 4.728595 GCGTTTGTTTTTACTCACTCCGTT 60.729 41.667 0.00 0.00 0.00 4.44
3669 3909 5.326292 CGTTTGTTTTTACTCACTCCGTTT 58.674 37.500 0.00 0.00 0.00 3.60
3670 3910 5.450066 CGTTTGTTTTTACTCACTCCGTTTC 59.550 40.000 0.00 0.00 0.00 2.78
3671 3911 6.549061 GTTTGTTTTTACTCACTCCGTTTCT 58.451 36.000 0.00 0.00 0.00 2.52
3672 3912 7.464444 CGTTTGTTTTTACTCACTCCGTTTCTA 60.464 37.037 0.00 0.00 0.00 2.10
3673 3913 7.846644 TTGTTTTTACTCACTCCGTTTCTAA 57.153 32.000 0.00 0.00 0.00 2.10
3674 3914 7.846644 TGTTTTTACTCACTCCGTTTCTAAA 57.153 32.000 0.00 0.00 0.00 1.85
3675 3915 8.441312 TGTTTTTACTCACTCCGTTTCTAAAT 57.559 30.769 0.00 0.00 0.00 1.40
3676 3916 9.545105 TGTTTTTACTCACTCCGTTTCTAAATA 57.455 29.630 0.00 0.00 0.00 1.40
3706 3946 8.594881 TCTTTCTAGAGATTTCAACAAGTGAC 57.405 34.615 0.00 0.00 35.39 3.67
3707 3947 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3708 3948 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3709 3949 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3710 3950 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3711 3951 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3713 3953 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3714 3954 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3715 3955 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
3716 3956 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
3717 3957 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
3718 3958 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
3719 3959 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
3720 3960 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
3721 3961 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
3722 3962 5.405571 ACAAGTGACTACATACGAAGCAAAG 59.594 40.000 0.00 0.00 0.00 2.77
3723 3963 5.135508 AGTGACTACATACGAAGCAAAGT 57.864 39.130 0.00 0.00 0.00 2.66
3724 3964 4.923871 AGTGACTACATACGAAGCAAAGTG 59.076 41.667 0.00 0.00 0.00 3.16
3725 3965 4.921515 GTGACTACATACGAAGCAAAGTGA 59.078 41.667 0.00 0.00 0.00 3.41
3726 3966 5.061064 GTGACTACATACGAAGCAAAGTGAG 59.939 44.000 0.00 0.00 0.00 3.51
3727 3967 5.135508 ACTACATACGAAGCAAAGTGAGT 57.864 39.130 0.00 0.00 0.00 3.41
3728 3968 4.923871 ACTACATACGAAGCAAAGTGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
3729 3969 3.990092 ACATACGAAGCAAAGTGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
3730 3970 4.377021 ACATACGAAGCAAAGTGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
3731 3971 4.997395 ACATACGAAGCAAAGTGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
3732 3972 5.120830 ACATACGAAGCAAAGTGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
3733 3973 3.733337 ACGAAGCAAAGTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
3734 3974 4.883083 ACGAAGCAAAGTGAGTGAATCTA 58.117 39.130 0.00 0.00 0.00 1.98
3735 3975 4.686554 ACGAAGCAAAGTGAGTGAATCTAC 59.313 41.667 0.00 0.00 0.00 2.59
3736 3976 4.686091 CGAAGCAAAGTGAGTGAATCTACA 59.314 41.667 0.00 0.00 0.00 2.74
3737 3977 5.388890 CGAAGCAAAGTGAGTGAATCTACAC 60.389 44.000 0.00 0.00 40.60 2.90
3773 4013 9.143155 TGTCTACATACATCCATATGTTGTAGT 57.857 33.333 22.56 15.48 44.07 2.73
3774 4014 9.627395 GTCTACATACATCCATATGTTGTAGTC 57.373 37.037 22.56 18.41 44.07 2.59
3775 4015 8.803235 TCTACATACATCCATATGTTGTAGTCC 58.197 37.037 22.56 0.00 44.07 3.85
3776 4016 7.373617 ACATACATCCATATGTTGTAGTCCA 57.626 36.000 16.38 1.84 44.07 4.02
3777 4017 7.977818 ACATACATCCATATGTTGTAGTCCAT 58.022 34.615 16.38 3.57 44.07 3.41
3778 4018 8.439971 ACATACATCCATATGTTGTAGTCCATT 58.560 33.333 16.38 2.34 44.07 3.16
3779 4019 9.288576 CATACATCCATATGTTGTAGTCCATTT 57.711 33.333 16.38 1.83 44.07 2.32
3780 4020 7.572523 ACATCCATATGTTGTAGTCCATTTG 57.427 36.000 1.24 0.00 44.07 2.32
3781 4021 7.345691 ACATCCATATGTTGTAGTCCATTTGA 58.654 34.615 1.24 0.00 44.07 2.69
3782 4022 7.833682 ACATCCATATGTTGTAGTCCATTTGAA 59.166 33.333 1.24 0.00 44.07 2.69
3783 4023 8.685427 CATCCATATGTTGTAGTCCATTTGAAA 58.315 33.333 1.24 0.00 0.00 2.69
3784 4024 8.821686 TCCATATGTTGTAGTCCATTTGAAAT 57.178 30.769 1.24 0.00 0.00 2.17
3785 4025 8.685427 TCCATATGTTGTAGTCCATTTGAAATG 58.315 33.333 10.84 10.84 0.00 2.32
3786 4026 8.469200 CCATATGTTGTAGTCCATTTGAAATGT 58.531 33.333 15.93 1.43 0.00 2.71
3787 4027 9.507280 CATATGTTGTAGTCCATTTGAAATGTC 57.493 33.333 15.93 9.10 0.00 3.06
3788 4028 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
3789 4029 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
3790 4030 8.322906 TGTTGTAGTCCATTTGAAATGTCTAG 57.677 34.615 15.93 1.90 0.00 2.43
3791 4031 8.154203 TGTTGTAGTCCATTTGAAATGTCTAGA 58.846 33.333 15.93 12.79 0.00 2.43
3792 4032 8.999431 GTTGTAGTCCATTTGAAATGTCTAGAA 58.001 33.333 15.93 16.70 0.00 2.10
3793 4033 9.567776 TTGTAGTCCATTTGAAATGTCTAGAAA 57.432 29.630 15.93 11.59 0.00 2.52
3794 4034 9.219603 TGTAGTCCATTTGAAATGTCTAGAAAG 57.780 33.333 15.93 0.00 0.00 2.62
3795 4035 9.436957 GTAGTCCATTTGAAATGTCTAGAAAGA 57.563 33.333 15.93 1.84 0.00 2.52
3813 4053 9.717942 CTAGAAAGACATATTTAGGAATGGAGG 57.282 37.037 0.00 0.00 0.00 4.30
3814 4054 7.521669 AGAAAGACATATTTAGGAATGGAGGG 58.478 38.462 0.00 0.00 0.00 4.30
3815 4055 7.350921 AGAAAGACATATTTAGGAATGGAGGGA 59.649 37.037 0.00 0.00 0.00 4.20
3816 4056 6.694445 AGACATATTTAGGAATGGAGGGAG 57.306 41.667 0.00 0.00 0.00 4.30
3852 4092 7.099120 GCTTGGTCACTTTTTCCATTGAATAT 58.901 34.615 0.00 0.00 0.00 1.28
3916 4156 8.730680 TGCAGAAATAGAACCTTCTTTATGAAC 58.269 33.333 0.00 0.00 38.70 3.18
3917 4157 8.730680 GCAGAAATAGAACCTTCTTTATGAACA 58.269 33.333 0.00 0.00 38.70 3.18
3946 4236 3.953712 ACACATCGTGGTCTACAATGA 57.046 42.857 0.00 0.00 37.94 2.57
3980 4322 1.983691 AGATCATCTGGGATCGCCATT 59.016 47.619 7.38 0.00 46.55 3.16
3998 4340 3.761752 CCATTCCCTGTTCCATTAAACGT 59.238 43.478 0.00 0.00 31.58 3.99
4026 4368 0.529773 TCAGACAACGCAGACCACAC 60.530 55.000 0.00 0.00 0.00 3.82
4145 4487 4.618927 GCAGGCAAGCTGAAATGATTACAA 60.619 41.667 0.00 0.00 0.00 2.41
4147 4489 4.523943 AGGCAAGCTGAAATGATTACAACA 59.476 37.500 0.00 0.00 0.00 3.33
4166 4508 0.884259 ATTTGCAAGTTTTGGCCCGC 60.884 50.000 0.00 0.00 0.00 6.13
4216 4558 2.369257 GATCGCCCCGCTCATCTTCA 62.369 60.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.527380 GGAGTTGGTGCGGTGGAAA 60.527 57.895 0.00 0.00 0.00 3.13
154 155 1.342175 TGATTGGGCTGCATCATTGGA 60.342 47.619 0.50 0.00 0.00 3.53
158 159 1.244816 CGATGATTGGGCTGCATCAT 58.755 50.000 12.18 12.18 41.86 2.45
172 173 5.579718 GTTCTTAATTCTCGAGACCGATGA 58.420 41.667 16.36 8.46 44.62 2.92
179 180 3.120095 TCGTGCGTTCTTAATTCTCGAGA 60.120 43.478 12.08 12.08 0.00 4.04
189 190 0.030504 TCCGTTGTCGTGCGTTCTTA 59.969 50.000 0.00 0.00 35.01 2.10
198 199 0.246635 CATTCCCTCTCCGTTGTCGT 59.753 55.000 0.00 0.00 35.01 4.34
263 264 8.673711 CCAAATAAAGGAAACAATACATCGAGA 58.326 33.333 0.00 0.00 0.00 4.04
284 285 5.715439 TGGATGGTAGTCAATCTCCAAAT 57.285 39.130 0.00 0.00 31.23 2.32
297 298 6.099845 ACCTTACCTTAACTCATGGATGGTAG 59.900 42.308 0.00 0.00 31.42 3.18
492 493 6.105333 CCCTGTCAAACAACAAAAGAAATCA 58.895 36.000 0.00 0.00 0.00 2.57
508 509 0.462225 TTTTCGCGTCACCCTGTCAA 60.462 50.000 5.77 0.00 0.00 3.18
512 513 2.413634 GGTTTATTTTCGCGTCACCCTG 60.414 50.000 5.77 0.00 0.00 4.45
536 537 1.192146 TTGTCCCCTCCCTCACTTCG 61.192 60.000 0.00 0.00 0.00 3.79
577 585 3.170717 TGGTACCTCCTTTCATCTTCGT 58.829 45.455 14.36 0.00 37.07 3.85
631 650 8.540388 TCTATTTCTAATGAGCAGTTGGTAGTT 58.460 33.333 0.00 0.00 0.00 2.24
661 681 0.040425 CAGGGCGTTCGACCAAAAAG 60.040 55.000 19.47 0.07 35.25 2.27
662 682 2.026522 CAGGGCGTTCGACCAAAAA 58.973 52.632 19.47 0.00 35.25 1.94
663 683 2.548295 GCAGGGCGTTCGACCAAAA 61.548 57.895 19.47 0.00 35.25 2.44
664 684 2.951475 AAGCAGGGCGTTCGACCAAA 62.951 55.000 19.47 0.00 35.25 3.28
665 685 3.469863 AAGCAGGGCGTTCGACCAA 62.470 57.895 19.47 0.00 35.25 3.67
666 686 3.876589 GAAGCAGGGCGTTCGACCA 62.877 63.158 19.47 0.00 35.25 4.02
667 687 3.119096 GAAGCAGGGCGTTCGACC 61.119 66.667 9.27 9.27 0.00 4.79
668 688 3.119096 GGAAGCAGGGCGTTCGAC 61.119 66.667 0.00 0.00 0.00 4.20
669 689 3.296709 GAGGAAGCAGGGCGTTCGA 62.297 63.158 0.00 0.00 0.00 3.71
670 690 2.788191 AAGAGGAAGCAGGGCGTTCG 62.788 60.000 0.00 0.00 0.00 3.95
671 691 1.003233 AAGAGGAAGCAGGGCGTTC 60.003 57.895 0.00 0.00 0.00 3.95
679 699 1.070758 AGCGACAAAGAAGAGGAAGCA 59.929 47.619 0.00 0.00 0.00 3.91
738 759 4.278669 GTGTGACAGGAGAAGAAGACTGTA 59.721 45.833 0.00 0.00 43.61 2.74
739 760 3.068873 GTGTGACAGGAGAAGAAGACTGT 59.931 47.826 0.00 0.00 45.99 3.55
808 830 2.557924 TGCAAAATCAGGAATGCGAACT 59.442 40.909 0.00 0.00 41.61 3.01
875 905 0.385390 CACCTCCCGCAAATAATGGC 59.615 55.000 0.00 0.00 0.00 4.40
942 972 5.048083 CCCTCGATGAAAATTCAACTCCAAA 60.048 40.000 0.00 0.00 41.13 3.28
957 987 2.029020 CAGTCAAGTCAACCCTCGATGA 60.029 50.000 0.00 0.00 0.00 2.92
1601 1631 6.151985 ACCATTTTCCAGTGCATAATAACGAA 59.848 34.615 0.00 0.00 0.00 3.85
1635 1665 8.355169 CCGATATTGTCCAAATCAAAGAATCAT 58.645 33.333 0.00 0.00 0.00 2.45
1636 1666 7.555914 TCCGATATTGTCCAAATCAAAGAATCA 59.444 33.333 0.00 0.00 0.00 2.57
1647 1677 4.698304 GGAAGTGTTCCGATATTGTCCAAA 59.302 41.667 0.00 0.00 40.59 3.28
1648 1678 4.258543 GGAAGTGTTCCGATATTGTCCAA 58.741 43.478 0.00 0.00 40.59 3.53
1851 1885 0.616891 AGTGCATGCTGATGTCTCCA 59.383 50.000 20.33 0.00 31.50 3.86
1868 1902 3.618507 GCCTGACTTATTGCAGAGACAGT 60.619 47.826 17.66 5.94 35.07 3.55
1876 1910 1.350684 TGACCTGCCTGACTTATTGCA 59.649 47.619 0.00 0.00 0.00 4.08
1919 1953 3.120477 ACACACACACACACACGTAAAAG 60.120 43.478 0.00 0.00 0.00 2.27
1925 1959 0.515127 AACACACACACACACACACG 59.485 50.000 0.00 0.00 0.00 4.49
1932 1966 4.162096 TGTTAAACCAACACACACACAC 57.838 40.909 0.00 0.00 42.29 3.82
2046 2080 2.496899 TTCAGTCTGATTCCTTGCCC 57.503 50.000 2.68 0.00 0.00 5.36
2105 2139 5.759506 TTTACGTGAAAATTCTCAAGGCA 57.240 34.783 0.00 0.00 0.00 4.75
2196 2230 3.416119 TTGTAGCTACCGAACGATCTG 57.584 47.619 21.01 0.00 0.00 2.90
2229 2263 5.605534 TGAATAGCTCTCAGTAAAGCATCC 58.394 41.667 0.00 0.00 41.06 3.51
2479 2572 3.303132 CCGCAATTATCGCAGGAGTTTAC 60.303 47.826 0.00 0.00 0.00 2.01
2513 2606 8.642020 CAGCTAAATTAGTGAGTTGAAATTTGC 58.358 33.333 0.00 0.00 34.37 3.68
2733 2832 9.762933 TTTTGGAATCAAGAAAGATAAAACCAG 57.237 29.630 0.00 0.00 33.98 4.00
2803 2902 4.142600 ACAGATTGAACTTTTGCCTATCGC 60.143 41.667 0.00 0.00 38.31 4.58
2823 2922 5.589855 TGACAAGTATGGGCATAATTGACAG 59.410 40.000 17.56 0.47 46.38 3.51
2909 3008 5.533154 ACGGACTGAAAACCAACATAATCAA 59.467 36.000 0.00 0.00 0.00 2.57
2931 3030 1.662446 CCAGCAAAGCAAAGGCACG 60.662 57.895 0.00 0.00 44.61 5.34
3117 3216 1.005037 TGCTACCGTCACCAGCAAG 60.005 57.895 0.00 0.00 42.09 4.01
3244 3343 1.880646 GCTGCTTACGGGTTGAAAGGA 60.881 52.381 0.00 0.00 0.00 3.36
3318 3417 0.463833 GGGACAATAGGAACAGGCGG 60.464 60.000 0.00 0.00 0.00 6.13
3390 3489 3.117794 TGTACAAAGAAACCTCGACGTG 58.882 45.455 0.00 0.00 0.00 4.49
3394 3493 6.316640 TCAACAAATGTACAAAGAAACCTCGA 59.683 34.615 0.00 0.00 0.00 4.04
3434 3533 6.352651 GGGGGCTTATTTTACAAATGGACAAT 60.353 38.462 0.00 0.00 0.00 2.71
3460 3559 0.693049 AAAGCTCACGGGTTCCAGAT 59.307 50.000 0.00 0.00 34.22 2.90
3470 3569 1.808945 AGCAATCCAGAAAAGCTCACG 59.191 47.619 0.00 0.00 0.00 4.35
3476 3575 3.213249 GCTCACAGCAATCCAGAAAAG 57.787 47.619 0.00 0.00 41.89 2.27
3545 3644 4.898829 TTTGGCAGATGATGTTATTCGG 57.101 40.909 0.00 0.00 0.00 4.30
3592 3691 9.419297 GGAAACTTAAGTTCAGAAAACAAAGTT 57.581 29.630 20.78 12.06 38.79 2.66
3680 3920 9.213799 GTCACTTGTTGAAATCTCTAGAAAGAT 57.786 33.333 0.00 0.00 37.61 2.40
3681 3921 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3682 3922 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3683 3923 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3684 3924 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3685 3925 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3686 3926 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3687 3927 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3688 3928 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3689 3929 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
3690 3930 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
3691 3931 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
3692 3932 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
3693 3933 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
3694 3934 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
3695 3935 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
3696 3936 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
3697 3937 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
3698 3938 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
3699 3939 5.405571 ACTTTGCTTCGTATGTAGTCACTTG 59.594 40.000 0.00 0.00 0.00 3.16
3700 3940 5.405571 CACTTTGCTTCGTATGTAGTCACTT 59.594 40.000 0.00 0.00 0.00 3.16
3701 3941 4.923871 CACTTTGCTTCGTATGTAGTCACT 59.076 41.667 0.00 0.00 0.00 3.41
3702 3942 4.921515 TCACTTTGCTTCGTATGTAGTCAC 59.078 41.667 0.00 0.00 0.00 3.67
3703 3943 5.128992 TCACTTTGCTTCGTATGTAGTCA 57.871 39.130 0.00 0.00 0.00 3.41
3704 3944 5.061064 CACTCACTTTGCTTCGTATGTAGTC 59.939 44.000 0.00 0.00 0.00 2.59
3705 3945 4.923871 CACTCACTTTGCTTCGTATGTAGT 59.076 41.667 0.00 0.00 0.00 2.73
3706 3946 5.161358 TCACTCACTTTGCTTCGTATGTAG 58.839 41.667 0.00 0.00 0.00 2.74
3707 3947 5.128992 TCACTCACTTTGCTTCGTATGTA 57.871 39.130 0.00 0.00 0.00 2.29
3708 3948 3.990092 TCACTCACTTTGCTTCGTATGT 58.010 40.909 0.00 0.00 0.00 2.29
3709 3949 4.990543 TTCACTCACTTTGCTTCGTATG 57.009 40.909 0.00 0.00 0.00 2.39
3710 3950 5.482908 AGATTCACTCACTTTGCTTCGTAT 58.517 37.500 0.00 0.00 0.00 3.06
3711 3951 4.883083 AGATTCACTCACTTTGCTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
3712 3952 3.733337 AGATTCACTCACTTTGCTTCGT 58.267 40.909 0.00 0.00 0.00 3.85
3713 3953 4.686091 TGTAGATTCACTCACTTTGCTTCG 59.314 41.667 0.00 0.00 0.00 3.79
3714 3954 5.698545 AGTGTAGATTCACTCACTTTGCTTC 59.301 40.000 0.00 0.00 44.07 3.86
3715 3955 5.615289 AGTGTAGATTCACTCACTTTGCTT 58.385 37.500 0.00 0.00 44.07 3.91
3716 3956 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
3747 3987 9.143155 ACTACAACATATGGATGTATGTAGACA 57.857 33.333 26.03 7.65 45.93 3.41
3748 3988 9.627395 GACTACAACATATGGATGTATGTAGAC 57.373 37.037 26.03 21.22 45.93 2.59
3749 3989 8.803235 GGACTACAACATATGGATGTATGTAGA 58.197 37.037 26.03 8.59 45.93 2.59
3750 3990 8.585018 TGGACTACAACATATGGATGTATGTAG 58.415 37.037 22.20 22.20 45.93 2.74
3751 3991 8.485578 TGGACTACAACATATGGATGTATGTA 57.514 34.615 18.38 11.27 45.93 2.29
3752 3992 7.373617 TGGACTACAACATATGGATGTATGT 57.626 36.000 18.38 17.31 45.93 2.29
3753 3993 8.853077 AATGGACTACAACATATGGATGTATG 57.147 34.615 18.38 15.31 45.93 2.39
3754 3994 9.288576 CAAATGGACTACAACATATGGATGTAT 57.711 33.333 18.38 11.72 45.93 2.29
3755 3995 8.490311 TCAAATGGACTACAACATATGGATGTA 58.510 33.333 17.53 17.53 45.93 2.29
3757 3997 7.806409 TCAAATGGACTACAACATATGGATG 57.194 36.000 7.80 8.32 39.16 3.51
3758 3998 8.821686 TTTCAAATGGACTACAACATATGGAT 57.178 30.769 7.80 0.00 0.00 3.41
3759 3999 8.685427 CATTTCAAATGGACTACAACATATGGA 58.315 33.333 7.80 0.00 0.00 3.41
3760 4000 8.469200 ACATTTCAAATGGACTACAACATATGG 58.531 33.333 14.70 0.00 0.00 2.74
3761 4001 9.507280 GACATTTCAAATGGACTACAACATATG 57.493 33.333 14.70 0.00 0.00 1.78
3762 4002 9.466497 AGACATTTCAAATGGACTACAACATAT 57.534 29.630 14.70 0.00 0.00 1.78
3763 4003 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
3764 4004 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
3765 4005 8.154203 TCTAGACATTTCAAATGGACTACAACA 58.846 33.333 14.70 0.00 0.00 3.33
3766 4006 8.547967 TCTAGACATTTCAAATGGACTACAAC 57.452 34.615 14.70 0.00 0.00 3.32
3767 4007 9.567776 TTTCTAGACATTTCAAATGGACTACAA 57.432 29.630 14.70 8.52 0.00 2.41
3768 4008 9.219603 CTTTCTAGACATTTCAAATGGACTACA 57.780 33.333 14.70 3.48 0.00 2.74
3769 4009 9.436957 TCTTTCTAGACATTTCAAATGGACTAC 57.563 33.333 14.70 1.26 0.00 2.73
3787 4027 9.717942 CCTCCATTCCTAAATATGTCTTTCTAG 57.282 37.037 0.00 0.00 0.00 2.43
3788 4028 8.660435 CCCTCCATTCCTAAATATGTCTTTCTA 58.340 37.037 0.00 0.00 0.00 2.10
3789 4029 7.350921 TCCCTCCATTCCTAAATATGTCTTTCT 59.649 37.037 0.00 0.00 0.00 2.52
3790 4030 7.518188 TCCCTCCATTCCTAAATATGTCTTTC 58.482 38.462 0.00 0.00 0.00 2.62
3791 4031 7.129504 ACTCCCTCCATTCCTAAATATGTCTTT 59.870 37.037 0.00 0.00 0.00 2.52
3792 4032 6.621514 ACTCCCTCCATTCCTAAATATGTCTT 59.378 38.462 0.00 0.00 0.00 3.01
3793 4033 6.153924 ACTCCCTCCATTCCTAAATATGTCT 58.846 40.000 0.00 0.00 0.00 3.41
3794 4034 6.441088 ACTCCCTCCATTCCTAAATATGTC 57.559 41.667 0.00 0.00 0.00 3.06
3795 4035 8.525729 AATACTCCCTCCATTCCTAAATATGT 57.474 34.615 0.00 0.00 0.00 2.29
3801 4041 9.640952 CAAAATAAATACTCCCTCCATTCCTAA 57.359 33.333 0.00 0.00 0.00 2.69
3802 4042 7.724061 GCAAAATAAATACTCCCTCCATTCCTA 59.276 37.037 0.00 0.00 0.00 2.94
3803 4043 6.551227 GCAAAATAAATACTCCCTCCATTCCT 59.449 38.462 0.00 0.00 0.00 3.36
3804 4044 6.551227 AGCAAAATAAATACTCCCTCCATTCC 59.449 38.462 0.00 0.00 0.00 3.01
3805 4045 7.588497 AGCAAAATAAATACTCCCTCCATTC 57.412 36.000 0.00 0.00 0.00 2.67
3806 4046 7.147672 CCAAGCAAAATAAATACTCCCTCCATT 60.148 37.037 0.00 0.00 0.00 3.16
3807 4047 6.324770 CCAAGCAAAATAAATACTCCCTCCAT 59.675 38.462 0.00 0.00 0.00 3.41
3808 4048 5.656416 CCAAGCAAAATAAATACTCCCTCCA 59.344 40.000 0.00 0.00 0.00 3.86
3809 4049 5.656859 ACCAAGCAAAATAAATACTCCCTCC 59.343 40.000 0.00 0.00 0.00 4.30
3810 4050 6.377146 TGACCAAGCAAAATAAATACTCCCTC 59.623 38.462 0.00 0.00 0.00 4.30
3811 4051 6.152831 GTGACCAAGCAAAATAAATACTCCCT 59.847 38.462 0.00 0.00 0.00 4.20
3812 4052 6.152831 AGTGACCAAGCAAAATAAATACTCCC 59.847 38.462 0.00 0.00 0.00 4.30
3813 4053 7.158099 AGTGACCAAGCAAAATAAATACTCC 57.842 36.000 0.00 0.00 0.00 3.85
3814 4054 9.476202 AAAAGTGACCAAGCAAAATAAATACTC 57.524 29.630 0.00 0.00 0.00 2.59
3815 4055 9.830975 AAAAAGTGACCAAGCAAAATAAATACT 57.169 25.926 0.00 0.00 0.00 2.12
3874 4114 9.169592 CTATTTCTGCATGAATTTGGGATTTTT 57.830 29.630 0.00 0.00 34.24 1.94
3875 4115 8.542080 TCTATTTCTGCATGAATTTGGGATTTT 58.458 29.630 0.00 0.00 34.24 1.82
3916 4156 5.651530 AGACCACGATGTGTTCTAGTAATG 58.348 41.667 0.00 0.00 33.68 1.90
3917 4157 5.916661 AGACCACGATGTGTTCTAGTAAT 57.083 39.130 0.00 0.00 33.68 1.89
3918 4158 5.706833 TGTAGACCACGATGTGTTCTAGTAA 59.293 40.000 4.70 0.00 38.02 2.24
3919 4159 5.247862 TGTAGACCACGATGTGTTCTAGTA 58.752 41.667 4.70 0.00 38.02 1.82
3920 4160 4.077108 TGTAGACCACGATGTGTTCTAGT 58.923 43.478 4.70 0.00 38.02 2.57
3998 4340 4.014406 TCTGCGTTGTCTGAGACCTATTA 58.986 43.478 10.52 0.00 0.00 0.98
4026 4368 2.289565 GTAAGAATTTGGAGGAGCGGG 58.710 52.381 0.00 0.00 0.00 6.13
4145 4487 1.809651 CGGGCCAAAACTTGCAAATGT 60.810 47.619 4.39 0.00 0.00 2.71
4147 4489 0.884259 GCGGGCCAAAACTTGCAAAT 60.884 50.000 4.39 0.00 0.00 2.32
4166 4508 0.687757 TCTTCCCTCGATCCAGTGGG 60.688 60.000 9.92 0.00 44.18 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.