AutoCloner

Multiple sequence alignment - TraesCS1A01G136000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G136000	chr1A	100.000	3373	0	0	1	3373	212024449	212021077	0.000000e+00	6229.0
1	TraesCS1A01G136000	chr1D	94.004	2752	121	13	1	2730	190476641	190479370	0.000000e+00	4128.0
2	TraesCS1A01G136000	chr1D	90.854	656	44	4	2729	3370	19927773	19928426	0.000000e+00	865.0
3	TraesCS1A01G136000	chr1D	90.823	632	50	4	2750	3373	435587304	435586673	0.000000e+00	839.0
4	TraesCS1A01G136000	chr1D	89.618	655	53	5	2730	3370	457051077	457051730	0.000000e+00	819.0
5	TraesCS1A01G136000	chr1D	95.082	61	3	0	241	301	190476837	190476897	2.770000e-16	97.1
6	TraesCS1A01G136000	chr1B	93.639	1745	82	10	1	1720	263944052	263945792	0.000000e+00	2580.0
7	TraesCS1A01G136000	chr1B	92.070	1034	48	11	1705	2730	263946124	263947131	0.000000e+00	1424.0
8	TraesCS1A01G136000	chr7D	91.756	655	40	2	2730	3370	260979	261633	0.000000e+00	898.0
9	TraesCS1A01G136000	chr7D	76.587	252	44	10	2752	2989	403062455	403062705	1.270000e-24	124.0
10	TraesCS1A01G136000	chr2D	91.603	655	42	2	2729	3370	461080531	461081185	0.000000e+00	893.0
11	TraesCS1A01G136000	chr2D	91.442	631	47	3	2750	3373	209128719	209128089	0.000000e+00	859.0
12	TraesCS1A01G136000	chr7A	90.808	631	51	4	2749	3373	697112389	697113018	0.000000e+00	837.0
13	TraesCS1A01G136000	chr6B	89.226	659	53	6	2729	3373	26860015	26859361	0.000000e+00	808.0
14	TraesCS1A01G136000	chr5D	89.297	654	57	5	2730	3370	5421340	5421993	0.000000e+00	808.0
15	TraesCS1A01G136000	chr4D	88.586	403	36	6	2730	3125	502969896	502969497	6.550000e-132	481.0
16	TraesCS1A01G136000	chrUn	87.342	395	36	4	2730	3111	398593279	398592886	1.110000e-119	440.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G136000	chr1A	212021077	212024449	3372	True	6229.00	6229	100.0000	1	3373	1	chr1A.!!$R1	3372
1	TraesCS1A01G136000	chr1D	190476641	190479370	2729	False	2112.55	4128	94.5430	1	2730	2	chr1D.!!$F3	2729
2	TraesCS1A01G136000	chr1D	19927773	19928426	653	False	865.00	865	90.8540	2729	3370	1	chr1D.!!$F1	641
3	TraesCS1A01G136000	chr1D	435586673	435587304	631	True	839.00	839	90.8230	2750	3373	1	chr1D.!!$R1	623
4	TraesCS1A01G136000	chr1D	457051077	457051730	653	False	819.00	819	89.6180	2730	3370	1	chr1D.!!$F2	640
5	TraesCS1A01G136000	chr1B	263944052	263947131	3079	False	2002.00	2580	92.8545	1	2730	2	chr1B.!!$F1	2729
6	TraesCS1A01G136000	chr7D	260979	261633	654	False	898.00	898	91.7560	2730	3370	1	chr7D.!!$F1	640
7	TraesCS1A01G136000	chr2D	461080531	461081185	654	False	893.00	893	91.6030	2729	3370	1	chr2D.!!$F1	641
8	TraesCS1A01G136000	chr2D	209128089	209128719	630	True	859.00	859	91.4420	2750	3373	1	chr2D.!!$R1	623
9	TraesCS1A01G136000	chr7A	697112389	697113018	629	False	837.00	837	90.8080	2749	3373	1	chr7A.!!$F1	624
10	TraesCS1A01G136000	chr6B	26859361	26860015	654	True	808.00	808	89.2260	2729	3373	1	chr6B.!!$R1	644
11	TraesCS1A01G136000	chr5D	5421340	5421993	653	False	808.00	808	89.2970	2730	3370	1	chr5D.!!$F1	640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
422	430	0.032403	GTGCACACACGTACCTACCA	59.968	55.0	13.17	0.0	36.98	3.25	F
429	437	0.248012	CACGTACCTACCATGCCACA	59.752	55.0	0.00	0.0	0.00	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1305	1332	0.101759	CAAGCCTTGAATGCCCATCG	59.898	55.0	0.0	0.0	0.0	3.84	R
2382	2762	0.670546	ATCGCAACCAGACCACTTCG	60.671	55.0	0.0	0.0	0.0	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	8.154649	TGAAACAGAAAATCCTCACTCTAAAC	57.845	34.615	0.00	0.00	0.00	2.01
65	66	5.534407	GGTAAACACCTAAACCAAACATGG	58.466	41.667	0.00	0.00	32.04	3.66
102	110	8.640291	TGAACGAAATTAAAAGTTCACAACAAC	58.360	29.630	5.86	0.00	45.21	3.32
134	142	7.254795	CCCTTTACAGTAGGAAAAATAGCATCG	60.255	40.741	0.00	0.00	34.56	3.84
190	198	4.328169	GTGGCTGTACTTCCGTTTGTATAC	59.672	45.833	0.00	0.00	0.00	1.47
221	229	6.984474	TCTTTCTATACCTGCCAAATCTTACG	59.016	38.462	0.00	0.00	0.00	3.18
248	256	6.039616	CAGAGCATAGGACAAGTCTTTCTAC	58.960	44.000	0.00	0.00	0.00	2.59
354	362	4.379499	CCCACTGTTTTTATCTCGCTTTCC	60.379	45.833	0.00	0.00	0.00	3.13
363	371	8.459635	GTTTTTATCTCGCTTTCCTTTCCTAAT	58.540	33.333	0.00	0.00	0.00	1.73
385	393	2.983907	TTGTTTGACCGGTGTAGACA	57.016	45.000	14.63	9.92	0.00	3.41
407	415	4.560743	TCGGCTGCTTGTGGTGCA	62.561	61.111	0.00	0.00	38.81	4.57
422	430	0.032403	GTGCACACACGTACCTACCA	59.968	55.000	13.17	0.00	36.98	3.25
429	437	0.248012	CACGTACCTACCATGCCACA	59.752	55.000	0.00	0.00	0.00	4.17
441	449	3.387374	ACCATGCCACAAAGTCATTTTCA	59.613	39.130	0.00	0.00	0.00	2.69
469	477	5.168569	CGTTTAATGCACTCTAGAACCTGA	58.831	41.667	0.00	0.00	0.00	3.86
471	479	6.183360	CGTTTAATGCACTCTAGAACCTGAAG	60.183	42.308	0.00	0.00	0.00	3.02
472	480	4.899352	AATGCACTCTAGAACCTGAAGT	57.101	40.909	0.00	0.00	0.00	3.01
473	481	4.899352	ATGCACTCTAGAACCTGAAGTT	57.101	40.909	0.00	0.00	43.07	2.66
474	482	6.360370	AATGCACTCTAGAACCTGAAGTTA	57.640	37.500	0.00	0.00	39.40	2.24
480	496	7.360438	GCACTCTAGAACCTGAAGTTACATTTG	60.360	40.741	0.00	0.00	39.40	2.32
690	707	6.820656	CCCATATAACTATCTCATTGTCCTGC	59.179	42.308	0.00	0.00	0.00	4.85
711	729	3.181470	GCTTCTGACCCAATCTAGGAGAC	60.181	52.174	0.00	0.00	0.00	3.36
747	765	4.695455	GCTTGTTGTTTGTCTAGCATAGGA	59.305	41.667	0.00	0.00	39.78	2.94
792	810	2.577700	ACATCCTAGCTCTACCTGACG	58.422	52.381	0.00	0.00	0.00	4.35
913	940	5.010282	TCCTTTCTTAATTTGTGCTCCCTC	58.990	41.667	0.00	0.00	0.00	4.30
947	974	5.994250	TGGGAGATGAAACTGGAAGATAAG	58.006	41.667	0.00	0.00	37.43	1.73
982	1009	5.975693	TTATCTGCCGTTCCAAATTTTCT	57.024	34.783	0.00	0.00	0.00	2.52
1297	1324	2.439507	ACTCCAAAGACTCCTCAAGCAA	59.560	45.455	0.00	0.00	0.00	3.91
1305	1332	2.157738	ACTCCTCAAGCAACTGAATGC	58.842	47.619	2.74	2.74	46.78	3.56
1356	1383	5.604231	TCCACTTGATCTGCTGGTATAGAAT	59.396	40.000	0.00	0.00	0.00	2.40
1363	1390	5.854010	TCTGCTGGTATAGAATCGAAACT	57.146	39.130	0.00	0.00	0.00	2.66
1369	1396	7.068348	TGCTGGTATAGAATCGAAACTACTTCT	59.932	37.037	0.00	0.00	31.20	2.85
1411	1438	9.045223	GCATTGTATTTGTATCACATCTGACTA	57.955	33.333	0.00	0.00	0.00	2.59
1499	1526	1.665679	CACGTTTCATCAAGGATCCGG	59.334	52.381	5.98	0.00	0.00	5.14
1645	1672	4.662966	TGGTAACAGTAGGTGAGACCTA	57.337	45.455	0.00	0.00	46.04	3.08
1661	1688	6.642950	GTGAGACCTATGAGCATACATAACAC	59.357	42.308	0.00	0.00	33.26	3.32
1669	1696	5.356426	TGAGCATACATAACACGCTACATT	58.644	37.500	0.00	0.00	31.86	2.71
1880	2259	2.187958	TGTTATCCCCTCAGTCTGGTG	58.812	52.381	0.00	0.00	0.00	4.17
1916	2295	1.771854	TGAACTAGGTGGAACTGGCAA	59.228	47.619	0.00	0.00	36.74	4.52
2010	2389	1.200948	GAGTGAGCATTGGCCTTTCAC	59.799	52.381	3.32	10.53	40.88	3.18
2024	2403	4.443034	GGCCTTTCACGAGGTTAGTCATAT	60.443	45.833	0.00	0.00	39.11	1.78
2092	2472	6.547510	AGCTCTAATCTGTTTGAAAACCACTT	59.452	34.615	3.59	0.00	38.11	3.16
2117	2497	5.981088	TTTTCAGCAGAATAGATGGCAAA	57.019	34.783	0.00	0.00	32.89	3.68
2195	2575	2.703416	TCACATTTCAAGCTGCTCGAT	58.297	42.857	1.00	0.00	0.00	3.59
2231	2611	2.159382	GCCGTTCTTTTCCCAGATTCA	58.841	47.619	0.00	0.00	0.00	2.57
2297	2677	1.678970	GCCAAGGCCTGTACCCAAG	60.679	63.158	5.69	0.00	34.56	3.61
2306	2686	4.410400	GTACCCAAGGCCGCAGCT	62.410	66.667	0.00	0.00	39.73	4.24
2321	2701	1.538950	GCAGCTTCTCCCAGAGTTTTG	59.461	52.381	0.00	0.00	0.00	2.44
2366	2746	1.766143	CGGTGGCGCAGAATAAGCTC	61.766	60.000	10.83	0.00	0.00	4.09
2382	2762	1.064389	AGCTCCTATGAAGCCCCAAAC	60.064	52.381	0.00	0.00	0.00	2.93
2470	2850	8.456471	CAGTGTTTATCATTCATGTCATGTCTT	58.544	33.333	12.54	0.00	0.00	3.01
2483	2863	4.218200	TGTCATGTCTTTGGGTATGCTTTG	59.782	41.667	0.00	0.00	0.00	2.77
2499	2881	4.831107	TGCTTTGTTTCTTCTTTTTGCCT	58.169	34.783	0.00	0.00	0.00	4.75
2545	2927	5.310331	TGGATAATCATGGTCAGATTAGGCA	59.690	40.000	0.00	0.00	40.24	4.75
2583	2965	1.118838	GCCTGTCATACTCTCCTGCT	58.881	55.000	0.00	0.00	0.00	4.24
2602	2984	2.680339	GCTCATAAGGACCAAAGTCTGC	59.320	50.000	0.00	0.00	43.05	4.26
2797	3187	7.946207	TGCGGCCATTTTATTAATTATTCTCA	58.054	30.769	2.24	0.00	0.00	3.27
2888	3285	3.511610	AAGGGGTGCAAGCTGGGT	61.512	61.111	0.00	0.00	0.00	4.51
2907	3304	4.035278	GGTCAAATACTCAGACCTCTCG	57.965	50.000	0.00	0.00	46.45	4.04
3038	3435	4.444591	GGTCCATCTTCAGAGCAGATTGAT	60.445	45.833	0.00	0.00	28.21	2.57
3042	3439	4.548451	TCTTCAGAGCAGATTGATGTGT	57.452	40.909	0.00	0.00	28.63	3.72
3067	3464	4.468689	GGCAGGTACCTCCGCCAC	62.469	72.222	29.70	10.53	46.89	5.01
3131	3529	0.321564	CCATCTCCAAGCAACGGACA	60.322	55.000	0.00	0.00	0.00	4.02
3132	3530	1.679944	CCATCTCCAAGCAACGGACAT	60.680	52.381	0.00	0.00	0.00	3.06
3144	3542	2.804527	CAACGGACATAGATCCATGCTG	59.195	50.000	0.59	2.63	38.87	4.41
3194	3595	2.746277	CCCACAAGCGCCACCTAC	60.746	66.667	2.29	0.00	0.00	3.18
3215	3616	1.530655	CCAAGGTTCCCAAAGCGGT	60.531	57.895	0.00	0.00	37.95	5.68
3277	3678	2.621526	CCAACAAAGTTAGGGCTTTCGT	59.378	45.455	0.00	0.00	36.64	3.85
3286	3687	1.221021	GGGCTTTCGTTCGGGAGAT	59.779	57.895	0.00	0.00	39.57	2.75
3291	3692	2.358267	GCTTTCGTTCGGGAGATCTAGA	59.642	50.000	0.00	0.00	39.57	2.43
3298	3699	2.419686	TCGGGAGATCTAGAGGAAGGA	58.580	52.381	0.00	0.00	0.00	3.36
3305	3706	4.803452	AGATCTAGAGGAAGGAGAAGTGG	58.197	47.826	0.00	0.00	0.00	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	5.791057	CCATGTTTGGTTTAGGTGTTTACCG	60.791	44.000	0.00	0.00	44.01	4.02
65	66	3.806316	ATTTCGTTCATGTGACGTTCC	57.194	42.857	18.68	0.00	0.00	3.62
134	142	7.841915	TCCTCATTTCAAAAACCAAACTTTC	57.158	32.000	0.00	0.00	0.00	2.62
190	198	5.258456	TGGCAGGTATAGAAAGAGTAACG	57.742	43.478	0.00	0.00	0.00	3.18
221	229	2.763448	AGACTTGTCCTATGCTCTGTCC	59.237	50.000	0.00	0.00	0.00	4.02
248	256	1.737793	GTCGGTAAGATTTGGCAGGTG	59.262	52.381	0.00	0.00	0.00	4.00
354	362	5.183140	ACCGGTCAAACAATCATTAGGAAAG	59.817	40.000	0.00	0.00	0.00	2.62
363	371	3.181464	TGTCTACACCGGTCAAACAATCA	60.181	43.478	2.59	0.00	0.00	2.57
385	393	1.968017	CCACAAGCAGCCGACATGT	60.968	57.895	0.00	0.00	0.00	3.21
407	415	0.248289	GGCATGGTAGGTACGTGTGT	59.752	55.000	0.00	0.00	0.00	3.72
418	426	4.586421	TGAAAATGACTTTGTGGCATGGTA	59.414	37.500	0.00	0.00	45.29	3.25
429	437	8.921670	GCATTAAACGGTAATGAAAATGACTTT	58.078	29.630	19.60	0.00	37.15	2.66
441	449	6.537660	GGTTCTAGAGTGCATTAAACGGTAAT	59.462	38.462	0.00	0.00	0.00	1.89
521	537	7.453393	AGCTGATAATTAGTTTATGCAGCCTA	58.547	34.615	0.00	0.00	43.44	3.93
690	707	3.067461	CGTCTCCTAGATTGGGTCAGAAG	59.933	52.174	0.00	0.00	0.00	2.85
723	741	3.542712	ATGCTAGACAAACAACAAGCG	57.457	42.857	0.00	0.00	32.67	4.68
869	896	6.296026	AGGAGTACAGCAACAACAAAGATAA	58.704	36.000	0.00	0.00	0.00	1.75
913	940	5.884792	AGTTTCATCTCCCAGCTTCAATAAG	59.115	40.000	0.00	0.00	35.68	1.73
982	1009	4.588951	CCCCATGATGTCTACTACTAGCAA	59.411	45.833	0.00	0.00	0.00	3.91
1140	1167	4.079901	AGCTCATCATCCTTCTCCACATTT	60.080	41.667	0.00	0.00	0.00	2.32
1305	1332	0.101759	CAAGCCTTGAATGCCCATCG	59.898	55.000	0.00	0.00	0.00	3.84
1311	1338	2.157738	AGTGACTCAAGCCTTGAATGC	58.842	47.619	8.74	1.69	39.58	3.56
1356	1383	6.808829	TGGAGTTAACAAGAAGTAGTTTCGA	58.191	36.000	8.61	0.00	40.86	3.71
1363	1390	6.058833	TGCACATTGGAGTTAACAAGAAGTA	58.941	36.000	8.61	0.00	0.00	2.24
1369	1396	8.147058	AAATACAATGCACATTGGAGTTAACAA	58.853	29.630	23.34	0.00	44.98	2.83
1499	1526	7.617041	ACAAAAGATGATACTTACTGCCTTC	57.383	36.000	0.00	0.00	0.00	3.46
1645	1672	4.944048	TGTAGCGTGTTATGTATGCTCAT	58.056	39.130	0.00	0.00	40.61	2.90
1679	1706	6.885376	TGGATACCATACACCAACGTAAAAAT	59.115	34.615	0.00	0.00	0.00	1.82
1680	1707	6.236409	TGGATACCATACACCAACGTAAAAA	58.764	36.000	0.00	0.00	0.00	1.94
1681	1708	5.802465	TGGATACCATACACCAACGTAAAA	58.198	37.500	0.00	0.00	0.00	1.52
1683	1710	5.104859	ACATGGATACCATACACCAACGTAA	60.105	40.000	2.86	0.00	43.15	3.18
1687	1714	5.529800	GGTTACATGGATACCATACACCAAC	59.470	44.000	14.80	9.76	43.15	3.77
1862	2241	1.204146	GCACCAGACTGAGGGGATAA	58.796	55.000	3.32	0.00	0.00	1.75
1916	2295	4.324267	GTGTAGTTGAAATGGTACTGCCT	58.676	43.478	0.00	0.00	38.35	4.75
2024	2403	9.699410	AATGTTTTTGAGGGTAATCATGATAGA	57.301	29.630	9.04	0.00	0.00	1.98
2092	2472	7.643569	TTGCCATCTATTCTGCTGAAAATTA	57.356	32.000	10.27	0.00	35.63	1.40
2117	2497	2.606587	GGTGGCCACCCTCACATCT	61.607	63.158	40.65	0.00	45.68	2.90
2138	2518	1.710996	TTGGAGCCTTTGGGGTTCGA	61.711	55.000	0.00	0.00	44.86	3.71
2139	2519	0.825840	TTTGGAGCCTTTGGGGTTCG	60.826	55.000	0.00	0.00	44.86	3.95
2174	2554	2.703416	TCGAGCAGCTTGAAATGTGAT	58.297	42.857	10.22	0.00	0.00	3.06
2179	2559	2.703416	TCACATCGAGCAGCTTGAAAT	58.297	42.857	16.74	4.88	0.00	2.17
2306	2686	4.464951	TCGTATAGCAAAACTCTGGGAGAA	59.535	41.667	1.31	0.00	33.32	2.87
2321	2701	2.797719	GCAAAGCTCTTCCTCGTATAGC	59.202	50.000	0.00	0.00	0.00	2.97
2366	2746	2.017049	CTTCGTTTGGGGCTTCATAGG	58.983	52.381	0.00	0.00	0.00	2.57
2382	2762	0.670546	ATCGCAACCAGACCACTTCG	60.671	55.000	0.00	0.00	0.00	3.79
2444	2824	7.982224	AGACATGACATGAATGATAAACACTG	58.018	34.615	22.19	0.00	0.00	3.66
2458	2838	3.949754	AGCATACCCAAAGACATGACATG	59.050	43.478	14.02	14.02	0.00	3.21
2470	2850	6.478512	AAAGAAGAAACAAAGCATACCCAA	57.521	33.333	0.00	0.00	0.00	4.12
2483	2863	3.457234	CCACCAGGCAAAAAGAAGAAAC	58.543	45.455	0.00	0.00	0.00	2.78
2545	2927	7.017319	ACAGGCTAATGACTAACCTAAAACT	57.983	36.000	0.00	0.00	0.00	2.66
2583	2965	4.640771	AAGCAGACTTTGGTCCTTATGA	57.359	40.909	0.00	0.00	43.05	2.15
2760	3150	1.002868	GGCCGCATGCATCTCCTAT	60.003	57.895	19.57	0.00	43.89	2.57
2762	3152	2.635787	AATGGCCGCATGCATCTCCT	62.636	55.000	19.57	0.00	43.89	3.69
2797	3187	6.781507	AGACAGTACTACTTTGTAAGGTCCTT	59.218	38.462	9.62	9.62	32.70	3.36
2851	3248	6.306199	CCCTTCATCATATGGATTGGTGTAA	58.694	40.000	2.13	0.00	32.57	2.41
2855	3252	3.728990	ACCCCTTCATCATATGGATTGGT	59.271	43.478	2.13	0.00	32.57	3.67
2888	3285	2.427453	GGCGAGAGGTCTGAGTATTTGA	59.573	50.000	0.00	0.00	0.00	2.69
2907	3304	4.745620	CGACTTTAGATGTTAGGCTTAGGC	59.254	45.833	0.00	0.00	37.82	3.93
2936	3333	2.420568	GGTATGTGGCTCGGTCGGA	61.421	63.158	0.00	0.00	0.00	4.55
2976	3373	0.663269	GACACATGTGAGTGCGTCGA	60.663	55.000	31.94	0.00	43.23	4.20
3038	3435	4.577152	CCTGCCAAGGTTGACACA	57.423	55.556	0.00	0.00	38.96	3.72
3215	3616	0.762418	TCGTTCCCTTCTTGAAGGCA	59.238	50.000	20.71	6.42	38.63	4.75
3277	3678	2.784095	TCCTTCCTCTAGATCTCCCGAA	59.216	50.000	0.00	0.00	0.00	4.30
3286	3687	2.023888	CCCCACTTCTCCTTCCTCTAGA	60.024	54.545	0.00	0.00	0.00	2.43
3291	3692	4.589569	CCCCCACTTCTCCTTCCT	57.410	61.111	0.00	0.00	0.00	3.36
3305	3706	0.471211	TCGGTATGGACTGATCCCCC	60.471	60.000	0.00	0.00	45.59	5.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.