Multiple sequence alignment - TraesCS1A01G135900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G135900 chr1A 100.000 3310 0 0 1 3310 212017507 212020816 0.000000e+00 6113.0
1 TraesCS1A01G135900 chr1A 96.863 510 15 1 2801 3310 285394385 285393877 0.000000e+00 852.0
2 TraesCS1A01G135900 chr1D 91.299 2379 139 43 18 2371 190481688 190479353 0.000000e+00 3184.0
3 TraesCS1A01G135900 chr1D 91.395 430 29 5 2376 2801 457052197 457051772 1.710000e-162 582.0
4 TraesCS1A01G135900 chr1B 91.475 1736 88 41 665 2371 263948818 263947114 0.000000e+00 2331.0
5 TraesCS1A01G135900 chr1B 95.729 679 25 3 1 677 263979933 263979257 0.000000e+00 1090.0
6 TraesCS1A01G135900 chr7A 97.642 509 11 1 2802 3310 343243424 343242917 0.000000e+00 872.0
7 TraesCS1A01G135900 chr7A 96.857 509 14 2 2802 3310 45331191 45331697 0.000000e+00 850.0
8 TraesCS1A01G135900 chr7A 96.667 510 15 2 2801 3310 575231673 575232180 0.000000e+00 846.0
9 TraesCS1A01G135900 chr7A 92.566 417 30 1 2385 2801 239546820 239547235 6.110000e-167 597.0
10 TraesCS1A01G135900 chr6A 97.642 509 11 1 2802 3310 96315832 96315325 0.000000e+00 872.0
11 TraesCS1A01G135900 chr6A 97.047 508 13 2 2803 3310 410038200 410037695 0.000000e+00 854.0
12 TraesCS1A01G135900 chr6A 96.491 513 16 2 2798 3310 151445126 151445636 0.000000e+00 846.0
13 TraesCS1A01G135900 chr5A 97.053 509 14 1 2802 3310 482442150 482442657 0.000000e+00 856.0
14 TraesCS1A01G135900 chr5A 90.385 52 5 0 1258 1309 135154552 135154603 5.930000e-08 69.4
15 TraesCS1A01G135900 chr2A 96.857 509 15 1 2800 3308 281423722 281423215 0.000000e+00 850.0
16 TraesCS1A01G135900 chr2A 72.945 292 58 17 1726 2004 716488138 716487855 7.610000e-12 82.4
17 TraesCS1A01G135900 chr6D 94.145 427 24 1 2376 2802 22237519 22237094 0.000000e+00 649.0
18 TraesCS1A01G135900 chr6D 91.014 434 27 5 2376 2799 413279321 413278890 2.860000e-160 575.0
19 TraesCS1A01G135900 chr5D 92.471 425 26 3 2377 2801 109940647 109941065 1.310000e-168 603.0
20 TraesCS1A01G135900 chr7D 92.235 425 27 3 2377 2801 144158591 144159009 6.110000e-167 597.0
21 TraesCS1A01G135900 chr2D 92.000 425 30 2 2377 2801 461081647 461081227 7.910000e-166 593.0
22 TraesCS1A01G135900 chr2D 91.765 425 31 2 2377 2801 55161018 55161438 3.680000e-164 588.0
23 TraesCS1A01G135900 chr2D 73.333 255 49 15 1726 1968 578937091 578936844 3.540000e-10 76.8
24 TraesCS1A01G135900 chr3D 91.101 427 30 5 2376 2801 20212990 20213409 3.710000e-159 571.0
25 TraesCS1A01G135900 chr2B 73.622 254 50 16 1726 1968 695859745 695859498 7.610000e-12 82.4
26 TraesCS1A01G135900 chr5B 90.385 52 5 0 1258 1309 136018626 136018677 5.930000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G135900 chr1A 212017507 212020816 3309 False 6113 6113 100.000 1 3310 1 chr1A.!!$F1 3309
1 TraesCS1A01G135900 chr1A 285393877 285394385 508 True 852 852 96.863 2801 3310 1 chr1A.!!$R1 509
2 TraesCS1A01G135900 chr1D 190479353 190481688 2335 True 3184 3184 91.299 18 2371 1 chr1D.!!$R1 2353
3 TraesCS1A01G135900 chr1B 263947114 263948818 1704 True 2331 2331 91.475 665 2371 1 chr1B.!!$R1 1706
4 TraesCS1A01G135900 chr1B 263979257 263979933 676 True 1090 1090 95.729 1 677 1 chr1B.!!$R2 676
5 TraesCS1A01G135900 chr7A 343242917 343243424 507 True 872 872 97.642 2802 3310 1 chr7A.!!$R1 508
6 TraesCS1A01G135900 chr7A 45331191 45331697 506 False 850 850 96.857 2802 3310 1 chr7A.!!$F1 508
7 TraesCS1A01G135900 chr7A 575231673 575232180 507 False 846 846 96.667 2801 3310 1 chr7A.!!$F3 509
8 TraesCS1A01G135900 chr6A 96315325 96315832 507 True 872 872 97.642 2802 3310 1 chr6A.!!$R1 508
9 TraesCS1A01G135900 chr6A 410037695 410038200 505 True 854 854 97.047 2803 3310 1 chr6A.!!$R2 507
10 TraesCS1A01G135900 chr6A 151445126 151445636 510 False 846 846 96.491 2798 3310 1 chr6A.!!$F1 512
11 TraesCS1A01G135900 chr5A 482442150 482442657 507 False 856 856 97.053 2802 3310 1 chr5A.!!$F2 508
12 TraesCS1A01G135900 chr2A 281423215 281423722 507 True 850 850 96.857 2800 3308 1 chr2A.!!$R1 508


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 994 0.104855 GTGTGGTGTGAGTGAGCTGA 59.895 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2441 2522 0.033011 CGAGGAAGGGAAGAGGAGGA 60.033 60.0 0.0 0.0 0.0 3.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 65 9.166173 TCATCAAACAGTCAAATTCTCGATAAT 57.834 29.630 0.00 0.00 0.00 1.28
121 124 4.161377 AGCTACTTCCTGAATTGAGTCTCC 59.839 45.833 0.00 0.00 0.00 3.71
155 158 2.560504 TGGTGCCATTAAGTAGCGATG 58.439 47.619 0.00 0.00 0.00 3.84
267 270 3.887352 TGCAATATACCGGCTAAAACCA 58.113 40.909 0.00 0.00 0.00 3.67
269 272 3.004002 GCAATATACCGGCTAAAACCACC 59.996 47.826 0.00 0.00 0.00 4.61
306 309 2.254951 CATTCAACAAGCGCGGCA 59.745 55.556 8.83 0.00 0.00 5.69
326 329 2.091924 ATAGAGGAGCGGGAGGGGA 61.092 63.158 0.00 0.00 0.00 4.81
403 406 3.665675 CTCGCAGTACCTGGTGGGC 62.666 68.421 10.23 9.21 39.10 5.36
454 457 1.481363 GTAGTGTGGAAGTAGGAGGGC 59.519 57.143 0.00 0.00 0.00 5.19
513 516 3.790437 CAGGGGGCAGACGAGCAT 61.790 66.667 0.00 0.00 35.83 3.79
729 741 4.640201 TCCATTCCAAGATTCCGCTAAAAG 59.360 41.667 0.00 0.00 0.00 2.27
801 813 4.555262 ACAAAATTGCATTAACCGAGGTG 58.445 39.130 0.00 0.00 0.00 4.00
805 817 1.377987 GCATTAACCGAGGTGGCCA 60.378 57.895 0.00 0.00 43.94 5.36
943 955 2.399511 ATCGATCGGACAGAGCAGCG 62.400 60.000 16.41 0.00 34.30 5.18
945 957 3.069980 GATCGGACAGAGCAGCGGT 62.070 63.158 0.00 0.00 34.89 5.68
949 961 2.202810 GACAGAGCAGCGGTAGGC 60.203 66.667 0.00 0.00 44.05 3.93
967 992 1.068083 CGTGTGGTGTGAGTGAGCT 59.932 57.895 0.00 0.00 0.00 4.09
968 993 1.217585 CGTGTGGTGTGAGTGAGCTG 61.218 60.000 0.00 0.00 0.00 4.24
969 994 0.104855 GTGTGGTGTGAGTGAGCTGA 59.895 55.000 0.00 0.00 0.00 4.26
970 995 1.051008 TGTGGTGTGAGTGAGCTGAT 58.949 50.000 0.00 0.00 0.00 2.90
971 996 1.001293 TGTGGTGTGAGTGAGCTGATC 59.999 52.381 0.00 0.00 0.00 2.92
972 997 1.001293 GTGGTGTGAGTGAGCTGATCA 59.999 52.381 0.00 0.00 34.79 2.92
973 998 1.274447 TGGTGTGAGTGAGCTGATCAG 59.726 52.381 18.84 18.84 39.07 2.90
974 999 1.547820 GGTGTGAGTGAGCTGATCAGA 59.452 52.381 27.04 2.29 39.07 3.27
1063 1088 2.305853 CGCCGCCTCATTCTCATCG 61.306 63.158 0.00 0.00 0.00 3.84
1064 1089 2.602322 GCCGCCTCATTCTCATCGC 61.602 63.158 0.00 0.00 0.00 4.58
1072 1097 0.656259 CATTCTCATCGCCACAGCAG 59.344 55.000 0.00 0.00 39.83 4.24
1319 1347 4.202020 CGACATCCTCGGTATGGGTATATG 60.202 50.000 0.00 0.00 38.87 1.78
1320 1348 3.451178 ACATCCTCGGTATGGGTATATGC 59.549 47.826 0.00 0.00 0.00 3.14
1321 1349 3.178412 TCCTCGGTATGGGTATATGCA 57.822 47.619 0.00 0.00 0.00 3.96
1322 1350 3.719871 TCCTCGGTATGGGTATATGCAT 58.280 45.455 3.79 3.79 0.00 3.96
1323 1351 3.450817 TCCTCGGTATGGGTATATGCATG 59.549 47.826 10.16 0.00 0.00 4.06
1324 1352 3.432186 CCTCGGTATGGGTATATGCATGG 60.432 52.174 10.16 0.00 0.00 3.66
1325 1353 2.093181 TCGGTATGGGTATATGCATGGC 60.093 50.000 10.16 0.00 0.00 4.40
1326 1354 2.355615 CGGTATGGGTATATGCATGGCA 60.356 50.000 10.16 0.00 44.86 4.92
1327 1355 3.282021 GGTATGGGTATATGCATGGCAG 58.718 50.000 10.16 0.00 43.65 4.85
1328 1356 2.519771 ATGGGTATATGCATGGCAGG 57.480 50.000 10.16 0.00 43.65 4.85
1329 1357 0.251297 TGGGTATATGCATGGCAGGC 60.251 55.000 18.55 18.55 43.65 4.85
1330 1358 0.251297 GGGTATATGCATGGCAGGCA 60.251 55.000 29.92 29.92 43.65 4.75
1331 1359 0.883833 GGTATATGCATGGCAGGCAC 59.116 55.000 30.38 16.28 45.23 5.01
1332 1360 1.546323 GGTATATGCATGGCAGGCACT 60.546 52.381 30.38 21.13 45.23 4.40
1333 1361 1.808945 GTATATGCATGGCAGGCACTC 59.191 52.381 30.38 15.31 45.23 3.51
1334 1362 0.538977 ATATGCATGGCAGGCACTCC 60.539 55.000 30.38 0.00 45.23 3.85
1335 1363 1.924145 TATGCATGGCAGGCACTCCA 61.924 55.000 30.38 12.03 45.23 3.86
1336 1364 2.441532 GCATGGCAGGCACTCCAT 60.442 61.111 20.53 0.22 43.54 3.41
1337 1365 2.056223 GCATGGCAGGCACTCCATT 61.056 57.895 20.53 0.00 41.83 3.16
1338 1366 1.813859 CATGGCAGGCACTCCATTG 59.186 57.895 0.00 0.00 41.83 2.82
1339 1367 0.681887 CATGGCAGGCACTCCATTGA 60.682 55.000 0.00 0.00 41.83 2.57
1340 1368 0.682209 ATGGCAGGCACTCCATTGAC 60.682 55.000 0.00 0.00 41.29 3.18
1341 1369 2.401766 GGCAGGCACTCCATTGACG 61.402 63.158 0.00 0.00 34.60 4.35
1342 1370 1.375908 GCAGGCACTCCATTGACGA 60.376 57.895 0.00 0.00 34.60 4.20
1343 1371 1.639298 GCAGGCACTCCATTGACGAC 61.639 60.000 0.00 0.00 34.60 4.34
1344 1372 0.036952 CAGGCACTCCATTGACGACT 60.037 55.000 0.00 0.00 34.60 4.18
1345 1373 0.247736 AGGCACTCCATTGACGACTC 59.752 55.000 0.00 0.00 33.74 3.36
1346 1374 0.247736 GGCACTCCATTGACGACTCT 59.752 55.000 0.00 0.00 0.00 3.24
1347 1375 1.634702 GCACTCCATTGACGACTCTC 58.365 55.000 0.00 0.00 0.00 3.20
1348 1376 1.203523 GCACTCCATTGACGACTCTCT 59.796 52.381 0.00 0.00 0.00 3.10
1349 1377 2.733858 GCACTCCATTGACGACTCTCTC 60.734 54.545 0.00 0.00 0.00 3.20
1350 1378 2.752354 CACTCCATTGACGACTCTCTCT 59.248 50.000 0.00 0.00 0.00 3.10
1351 1379 3.942115 CACTCCATTGACGACTCTCTCTA 59.058 47.826 0.00 0.00 0.00 2.43
1352 1380 4.035091 CACTCCATTGACGACTCTCTCTAG 59.965 50.000 0.00 0.00 0.00 2.43
1353 1381 2.946329 TCCATTGACGACTCTCTCTAGC 59.054 50.000 0.00 0.00 0.00 3.42
1354 1382 2.948979 CCATTGACGACTCTCTCTAGCT 59.051 50.000 0.00 0.00 0.00 3.32
1355 1383 4.130857 CCATTGACGACTCTCTCTAGCTA 58.869 47.826 0.00 0.00 0.00 3.32
1356 1384 4.024387 CCATTGACGACTCTCTCTAGCTAC 60.024 50.000 0.00 0.00 0.00 3.58
1357 1385 4.475051 TTGACGACTCTCTCTAGCTACT 57.525 45.455 0.00 0.00 0.00 2.57
1358 1386 4.049546 TGACGACTCTCTCTAGCTACTC 57.950 50.000 0.00 0.00 0.00 2.59
1365 1393 4.141574 ACTCTCTCTAGCTACTCGGTTCAT 60.142 45.833 0.00 0.00 0.00 2.57
1367 1395 3.880490 CTCTCTAGCTACTCGGTTCATGT 59.120 47.826 0.00 0.00 0.00 3.21
1529 1580 4.770362 TCGATCCCCTCACGGCCA 62.770 66.667 2.24 0.00 0.00 5.36
1547 1598 1.446792 AAGATCGTGGTGAGCGCTG 60.447 57.895 18.48 0.00 38.28 5.18
1548 1599 3.558411 GATCGTGGTGAGCGCTGC 61.558 66.667 18.48 7.45 0.00 5.25
1549 1600 3.997064 GATCGTGGTGAGCGCTGCT 62.997 63.158 18.48 2.68 43.88 4.24
1564 1645 1.005340 CTGCTCGCACTTCCAAGATC 58.995 55.000 0.00 0.00 0.00 2.75
1565 1646 0.737367 TGCTCGCACTTCCAAGATCG 60.737 55.000 0.00 0.00 0.00 3.69
1568 1649 1.656095 CTCGCACTTCCAAGATCGAAC 59.344 52.381 0.00 0.00 34.83 3.95
1570 1651 1.126846 CGCACTTCCAAGATCGAACAC 59.873 52.381 0.00 0.00 0.00 3.32
1571 1652 2.417719 GCACTTCCAAGATCGAACACT 58.582 47.619 0.00 0.00 0.00 3.55
1573 1654 2.663602 CACTTCCAAGATCGAACACTCG 59.336 50.000 0.00 0.00 46.87 4.18
1584 1665 2.951676 GAACACTCGACTTGAAAGCC 57.048 50.000 0.00 0.00 0.00 4.35
1585 1666 1.531578 GAACACTCGACTTGAAAGCCC 59.468 52.381 0.00 0.00 0.00 5.19
1586 1667 0.468226 ACACTCGACTTGAAAGCCCA 59.532 50.000 0.00 0.00 0.00 5.36
1587 1668 1.072331 ACACTCGACTTGAAAGCCCAT 59.928 47.619 0.00 0.00 0.00 4.00
1588 1669 2.154462 CACTCGACTTGAAAGCCCATT 58.846 47.619 0.00 0.00 0.00 3.16
1589 1670 3.244422 ACACTCGACTTGAAAGCCCATTA 60.244 43.478 0.00 0.00 0.00 1.90
1590 1671 3.372206 CACTCGACTTGAAAGCCCATTAG 59.628 47.826 0.00 0.00 0.00 1.73
1591 1672 3.008049 ACTCGACTTGAAAGCCCATTAGT 59.992 43.478 0.00 0.00 0.00 2.24
1592 1673 4.003648 CTCGACTTGAAAGCCCATTAGTT 58.996 43.478 0.00 0.00 0.00 2.24
1593 1674 3.751175 TCGACTTGAAAGCCCATTAGTTG 59.249 43.478 0.00 0.00 0.00 3.16
1594 1675 3.670627 CGACTTGAAAGCCCATTAGTTGC 60.671 47.826 0.00 0.00 0.00 4.17
1595 1676 2.562738 ACTTGAAAGCCCATTAGTTGCC 59.437 45.455 0.00 0.00 0.00 4.52
1596 1677 2.603075 TGAAAGCCCATTAGTTGCCT 57.397 45.000 0.00 0.00 0.00 4.75
1597 1678 2.888212 TGAAAGCCCATTAGTTGCCTT 58.112 42.857 0.00 0.00 0.00 4.35
1598 1679 2.562298 TGAAAGCCCATTAGTTGCCTTG 59.438 45.455 0.00 0.00 0.00 3.61
1599 1680 0.897621 AAGCCCATTAGTTGCCTTGC 59.102 50.000 0.00 0.00 0.00 4.01
1600 1681 0.040204 AGCCCATTAGTTGCCTTGCT 59.960 50.000 0.00 0.00 0.00 3.91
1601 1682 0.174162 GCCCATTAGTTGCCTTGCTG 59.826 55.000 0.00 0.00 0.00 4.41
1602 1683 1.838112 CCCATTAGTTGCCTTGCTGA 58.162 50.000 0.00 0.00 0.00 4.26
1603 1684 2.381911 CCCATTAGTTGCCTTGCTGAT 58.618 47.619 0.00 0.00 0.00 2.90
1604 1685 2.762327 CCCATTAGTTGCCTTGCTGATT 59.238 45.455 0.00 0.00 0.00 2.57
1605 1686 3.196254 CCCATTAGTTGCCTTGCTGATTT 59.804 43.478 0.00 0.00 0.00 2.17
1606 1687 4.402155 CCCATTAGTTGCCTTGCTGATTTA 59.598 41.667 0.00 0.00 0.00 1.40
1607 1688 5.343249 CCATTAGTTGCCTTGCTGATTTAC 58.657 41.667 0.00 0.00 0.00 2.01
1608 1689 5.105797 CCATTAGTTGCCTTGCTGATTTACA 60.106 40.000 0.00 0.00 0.00 2.41
1609 1690 6.406177 CCATTAGTTGCCTTGCTGATTTACAT 60.406 38.462 0.00 0.00 0.00 2.29
1610 1691 6.588719 TTAGTTGCCTTGCTGATTTACATT 57.411 33.333 0.00 0.00 0.00 2.71
1611 1692 4.813027 AGTTGCCTTGCTGATTTACATTG 58.187 39.130 0.00 0.00 0.00 2.82
1612 1693 3.235157 TGCCTTGCTGATTTACATTGC 57.765 42.857 0.00 0.00 0.00 3.56
1613 1694 2.094078 TGCCTTGCTGATTTACATTGCC 60.094 45.455 0.00 0.00 0.00 4.52
1614 1695 2.094078 GCCTTGCTGATTTACATTGCCA 60.094 45.455 0.00 0.00 0.00 4.92
1683 1764 3.975168 TCAAGGAGTACAAGGGTAAGC 57.025 47.619 0.00 0.00 0.00 3.09
1824 1905 0.945813 CGACCTCGAGTCCTACATCC 59.054 60.000 12.31 0.00 43.08 3.51
2246 2327 2.472029 CTCTTCTGGGACACCTACCAT 58.528 52.381 0.00 0.00 35.93 3.55
2314 2395 1.754803 CTACGGCCTGTGGTAGATTCA 59.245 52.381 9.29 0.00 38.69 2.57
2317 2398 0.811616 GGCCTGTGGTAGATTCAGCG 60.812 60.000 0.00 0.00 0.00 5.18
2371 2452 8.780846 TGTATGTATGGACAAGTACGAATTTT 57.219 30.769 0.00 0.00 39.59 1.82
2372 2453 9.221933 TGTATGTATGGACAAGTACGAATTTTT 57.778 29.630 0.00 0.00 39.59 1.94
2373 2454 9.485591 GTATGTATGGACAAGTACGAATTTTTG 57.514 33.333 0.00 0.00 39.59 2.44
2374 2455 7.731882 TGTATGGACAAGTACGAATTTTTGA 57.268 32.000 0.00 0.00 30.68 2.69
2375 2456 8.330466 TGTATGGACAAGTACGAATTTTTGAT 57.670 30.769 0.00 0.00 30.68 2.57
2376 2457 9.438228 TGTATGGACAAGTACGAATTTTTGATA 57.562 29.630 0.00 0.00 30.68 2.15
2377 2458 9.916397 GTATGGACAAGTACGAATTTTTGATAG 57.084 33.333 0.00 0.00 0.00 2.08
2378 2459 6.837992 TGGACAAGTACGAATTTTTGATAGC 58.162 36.000 0.00 0.00 0.00 2.97
2379 2460 6.128117 TGGACAAGTACGAATTTTTGATAGCC 60.128 38.462 0.00 0.00 0.00 3.93
2380 2461 5.864986 ACAAGTACGAATTTTTGATAGCCG 58.135 37.500 0.00 0.00 0.00 5.52
2381 2462 4.531659 AGTACGAATTTTTGATAGCCGC 57.468 40.909 0.00 0.00 0.00 6.53
2382 2463 2.844122 ACGAATTTTTGATAGCCGCC 57.156 45.000 0.00 0.00 0.00 6.13
2383 2464 1.404035 ACGAATTTTTGATAGCCGCCC 59.596 47.619 0.00 0.00 0.00 6.13
2384 2465 1.269051 CGAATTTTTGATAGCCGCCCC 60.269 52.381 0.00 0.00 0.00 5.80
2385 2466 2.031870 GAATTTTTGATAGCCGCCCCT 58.968 47.619 0.00 0.00 0.00 4.79
2386 2467 1.692411 ATTTTTGATAGCCGCCCCTC 58.308 50.000 0.00 0.00 0.00 4.30
2387 2468 0.395173 TTTTTGATAGCCGCCCCTCC 60.395 55.000 0.00 0.00 0.00 4.30
2388 2469 1.279025 TTTTGATAGCCGCCCCTCCT 61.279 55.000 0.00 0.00 0.00 3.69
2389 2470 1.696097 TTTGATAGCCGCCCCTCCTC 61.696 60.000 0.00 0.00 0.00 3.71
2390 2471 3.315140 GATAGCCGCCCCTCCTCC 61.315 72.222 0.00 0.00 0.00 4.30
2391 2472 3.837213 GATAGCCGCCCCTCCTCCT 62.837 68.421 0.00 0.00 0.00 3.69
2392 2473 3.837213 ATAGCCGCCCCTCCTCCTC 62.837 68.421 0.00 0.00 0.00 3.71
2397 2478 4.890306 GCCCCTCCTCCTCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
2398 2479 3.039526 CCCCTCCTCCTCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
2399 2480 2.612251 CCCTCCTCCTCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
2400 2481 2.612251 CCTCCTCCTCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
2401 2482 2.612251 CTCCTCCTCCTCCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
2402 2483 2.204624 TCCTCCTCCTCCCTCCCA 60.205 66.667 0.00 0.00 0.00 4.37
2403 2484 2.041405 CCTCCTCCTCCCTCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
2404 2485 2.041405 CTCCTCCTCCCTCCCACC 60.041 72.222 0.00 0.00 0.00 4.61
2405 2486 3.695825 TCCTCCTCCCTCCCACCC 61.696 72.222 0.00 0.00 0.00 4.61
2406 2487 4.825679 CCTCCTCCCTCCCACCCC 62.826 77.778 0.00 0.00 0.00 4.95
2407 2488 3.700350 CTCCTCCCTCCCACCCCT 61.700 72.222 0.00 0.00 0.00 4.79
2408 2489 2.204721 TCCTCCCTCCCACCCCTA 60.205 66.667 0.00 0.00 0.00 3.53
2409 2490 2.287251 CCTCCCTCCCACCCCTAG 59.713 72.222 0.00 0.00 0.00 3.02
2410 2491 2.333462 CCTCCCTCCCACCCCTAGA 61.333 68.421 0.00 0.00 0.00 2.43
2411 2492 1.075151 CTCCCTCCCACCCCTAGAC 60.075 68.421 0.00 0.00 0.00 2.59
2412 2493 1.865045 TCCCTCCCACCCCTAGACA 60.865 63.158 0.00 0.00 0.00 3.41
2413 2494 1.689582 CCCTCCCACCCCTAGACAC 60.690 68.421 0.00 0.00 0.00 3.67
2414 2495 1.689582 CCTCCCACCCCTAGACACC 60.690 68.421 0.00 0.00 0.00 4.16
2415 2496 1.689582 CTCCCACCCCTAGACACCC 60.690 68.421 0.00 0.00 0.00 4.61
2416 2497 2.691252 CCCACCCCTAGACACCCC 60.691 72.222 0.00 0.00 0.00 4.95
2417 2498 2.454941 CCACCCCTAGACACCCCT 59.545 66.667 0.00 0.00 0.00 4.79
2418 2499 1.689582 CCACCCCTAGACACCCCTC 60.690 68.421 0.00 0.00 0.00 4.30
2419 2500 1.689582 CACCCCTAGACACCCCTCC 60.690 68.421 0.00 0.00 0.00 4.30
2420 2501 2.040779 CCCCTAGACACCCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
2421 2502 2.647949 CCCCTAGACACCCCTCCCT 61.648 68.421 0.00 0.00 0.00 4.20
2422 2503 1.075151 CCCTAGACACCCCTCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
2423 2504 1.075151 CCTAGACACCCCTCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
2424 2505 1.595058 CCTAGACACCCCTCCCTCCT 61.595 65.000 0.00 0.00 0.00 3.69
2425 2506 0.105913 CTAGACACCCCTCCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
2426 2507 1.591280 TAGACACCCCTCCCTCCTCC 61.591 65.000 0.00 0.00 0.00 4.30
2427 2508 2.876858 ACACCCCTCCCTCCTCCT 60.877 66.667 0.00 0.00 0.00 3.69
2428 2509 2.041405 CACCCCTCCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
2429 2510 3.369388 ACCCCTCCCTCCTCCTCC 61.369 72.222 0.00 0.00 0.00 4.30
2430 2511 4.179599 CCCCTCCCTCCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
2431 2512 3.039526 CCCTCCCTCCTCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
2432 2513 1.705450 CCCTCCCTCCTCCTCCCTA 60.705 68.421 0.00 0.00 0.00 3.53
2433 2514 1.735455 CCCTCCCTCCTCCTCCCTAG 61.735 70.000 0.00 0.00 0.00 3.02
2434 2515 1.155155 CTCCCTCCTCCTCCCTAGC 59.845 68.421 0.00 0.00 0.00 3.42
2435 2516 2.202899 CCCTCCTCCTCCCTAGCC 59.797 72.222 0.00 0.00 0.00 3.93
2436 2517 2.203567 CCTCCTCCTCCCTAGCCG 60.204 72.222 0.00 0.00 0.00 5.52
2437 2518 2.915137 CTCCTCCTCCCTAGCCGC 60.915 72.222 0.00 0.00 0.00 6.53
2438 2519 4.541648 TCCTCCTCCCTAGCCGCC 62.542 72.222 0.00 0.00 0.00 6.13
2447 2528 4.548513 CTAGCCGCCCCTCCTCCT 62.549 72.222 0.00 0.00 0.00 3.69
2448 2529 4.541648 TAGCCGCCCCTCCTCCTC 62.542 72.222 0.00 0.00 0.00 3.71
2451 2532 3.157949 CCGCCCCTCCTCCTCTTC 61.158 72.222 0.00 0.00 0.00 2.87
2452 2533 3.157949 CGCCCCTCCTCCTCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
2453 2534 2.770475 GCCCCTCCTCCTCTTCCC 60.770 72.222 0.00 0.00 0.00 3.97
2454 2535 3.124088 CCCCTCCTCCTCTTCCCT 58.876 66.667 0.00 0.00 0.00 4.20
2455 2536 1.398234 CCCCTCCTCCTCTTCCCTT 59.602 63.158 0.00 0.00 0.00 3.95
2456 2537 0.692756 CCCCTCCTCCTCTTCCCTTC 60.693 65.000 0.00 0.00 0.00 3.46
2457 2538 0.692756 CCCTCCTCCTCTTCCCTTCC 60.693 65.000 0.00 0.00 0.00 3.46
2458 2539 0.341609 CCTCCTCCTCTTCCCTTCCT 59.658 60.000 0.00 0.00 0.00 3.36
2459 2540 1.691163 CCTCCTCCTCTTCCCTTCCTC 60.691 61.905 0.00 0.00 0.00 3.71
2460 2541 0.033011 TCCTCCTCTTCCCTTCCTCG 60.033 60.000 0.00 0.00 0.00 4.63
2461 2542 1.681486 CCTCCTCTTCCCTTCCTCGC 61.681 65.000 0.00 0.00 0.00 5.03
2462 2543 1.681486 CTCCTCTTCCCTTCCTCGCC 61.681 65.000 0.00 0.00 0.00 5.54
2463 2544 2.496817 CTCTTCCCTTCCTCGCCG 59.503 66.667 0.00 0.00 0.00 6.46
2464 2545 3.724914 CTCTTCCCTTCCTCGCCGC 62.725 68.421 0.00 0.00 0.00 6.53
2465 2546 4.840005 CTTCCCTTCCTCGCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
2536 2617 4.785453 CCTCGGTTGCCCTGCCTC 62.785 72.222 0.00 0.00 0.00 4.70
2537 2618 3.710722 CTCGGTTGCCCTGCCTCT 61.711 66.667 0.00 0.00 0.00 3.69
2538 2619 3.965539 CTCGGTTGCCCTGCCTCTG 62.966 68.421 0.00 0.00 0.00 3.35
2547 2628 4.020617 CTGCCTCTGCGTGGGGAA 62.021 66.667 0.00 0.00 41.78 3.97
2548 2629 4.329545 TGCCTCTGCGTGGGGAAC 62.330 66.667 0.00 0.00 41.78 3.62
2549 2630 4.021925 GCCTCTGCGTGGGGAACT 62.022 66.667 0.00 0.00 0.00 3.01
2550 2631 2.266055 CCTCTGCGTGGGGAACTC 59.734 66.667 0.00 0.00 0.00 3.01
2551 2632 2.266055 CTCTGCGTGGGGAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
2552 2633 3.649277 CTCTGCGTGGGGAACTCCG 62.649 68.421 0.00 0.00 36.71 4.63
2553 2634 4.760047 CTGCGTGGGGAACTCCGG 62.760 72.222 0.00 0.00 36.71 5.14
2555 2636 3.782443 GCGTGGGGAACTCCGGAT 61.782 66.667 3.57 0.00 36.71 4.18
2556 2637 2.499685 CGTGGGGAACTCCGGATC 59.500 66.667 3.57 0.00 36.71 3.36
2557 2638 2.058595 CGTGGGGAACTCCGGATCT 61.059 63.158 3.57 0.00 36.71 2.75
2558 2639 1.522569 GTGGGGAACTCCGGATCTG 59.477 63.158 3.57 0.00 36.71 2.90
2559 2640 1.689233 TGGGGAACTCCGGATCTGG 60.689 63.158 15.09 15.09 36.71 3.86
2560 2641 1.382695 GGGGAACTCCGGATCTGGA 60.383 63.158 22.28 22.28 36.71 3.86
2580 2661 3.830192 GGCGGCTCCATTGGCAAG 61.830 66.667 5.96 0.00 34.01 4.01
2581 2662 3.830192 GCGGCTCCATTGGCAAGG 61.830 66.667 5.96 5.28 0.00 3.61
2582 2663 3.830192 CGGCTCCATTGGCAAGGC 61.830 66.667 6.33 3.22 0.00 4.35
2583 2664 2.681064 GGCTCCATTGGCAAGGCA 60.681 61.111 6.33 0.00 35.78 4.75
2584 2665 2.575461 GCTCCATTGGCAAGGCAC 59.425 61.111 6.33 0.00 0.00 5.01
2585 2666 2.879907 CTCCATTGGCAAGGCACG 59.120 61.111 6.33 0.00 0.00 5.34
2586 2667 2.676121 TCCATTGGCAAGGCACGG 60.676 61.111 6.33 0.28 0.00 4.94
2587 2668 4.440127 CCATTGGCAAGGCACGGC 62.440 66.667 6.33 0.00 0.00 5.68
2616 2697 4.082523 CGTGCGGGTGGTGGATCT 62.083 66.667 0.00 0.00 0.00 2.75
2617 2698 2.436646 GTGCGGGTGGTGGATCTG 60.437 66.667 0.00 0.00 0.00 2.90
2618 2699 3.716195 TGCGGGTGGTGGATCTGG 61.716 66.667 0.00 0.00 0.00 3.86
2620 2701 4.838152 CGGGTGGTGGATCTGGCG 62.838 72.222 0.00 0.00 0.00 5.69
2621 2702 3.717294 GGGTGGTGGATCTGGCGT 61.717 66.667 0.00 0.00 0.00 5.68
2622 2703 2.125106 GGTGGTGGATCTGGCGTC 60.125 66.667 0.00 0.00 0.00 5.19
2623 2704 2.125106 GTGGTGGATCTGGCGTCC 60.125 66.667 0.00 0.00 36.26 4.79
2624 2705 3.399181 TGGTGGATCTGGCGTCCC 61.399 66.667 0.00 0.00 34.76 4.46
2625 2706 4.530857 GGTGGATCTGGCGTCCCG 62.531 72.222 0.00 0.00 34.76 5.14
2626 2707 4.530857 GTGGATCTGGCGTCCCGG 62.531 72.222 0.00 0.00 38.98 5.73
2656 2737 2.908015 CGGGATCCGGTGGTCATT 59.092 61.111 11.10 0.00 44.15 2.57
2657 2738 1.523711 CGGGATCCGGTGGTCATTG 60.524 63.158 11.10 0.00 44.15 2.82
2658 2739 1.152963 GGGATCCGGTGGTCATTGG 60.153 63.158 5.45 0.00 0.00 3.16
2659 2740 1.823899 GGATCCGGTGGTCATTGGC 60.824 63.158 0.00 0.00 0.00 4.52
2660 2741 2.124736 ATCCGGTGGTCATTGGCG 60.125 61.111 0.00 0.00 0.00 5.69
2661 2742 3.697439 ATCCGGTGGTCATTGGCGG 62.697 63.158 0.00 0.00 0.00 6.13
2662 2743 4.715523 CCGGTGGTCATTGGCGGT 62.716 66.667 0.00 0.00 0.00 5.68
2663 2744 3.124921 CGGTGGTCATTGGCGGTC 61.125 66.667 0.00 0.00 0.00 4.79
2664 2745 2.033448 GGTGGTCATTGGCGGTCA 59.967 61.111 0.00 0.00 0.00 4.02
2665 2746 2.040544 GGTGGTCATTGGCGGTCAG 61.041 63.158 0.00 0.00 0.00 3.51
2675 2756 3.723348 GCGGTCAGCGGTGGTTTC 61.723 66.667 15.67 3.38 35.41 2.78
2676 2757 2.030562 CGGTCAGCGGTGGTTTCT 59.969 61.111 15.67 0.00 0.00 2.52
2677 2758 2.317609 CGGTCAGCGGTGGTTTCTG 61.318 63.158 15.67 4.82 0.00 3.02
2678 2759 2.617274 GGTCAGCGGTGGTTTCTGC 61.617 63.158 15.67 0.00 39.72 4.26
2679 2760 2.664851 TCAGCGGTGGTTTCTGCG 60.665 61.111 15.67 0.00 43.62 5.18
2680 2761 2.664851 CAGCGGTGGTTTCTGCGA 60.665 61.111 6.74 0.00 43.62 5.10
2681 2762 2.034879 CAGCGGTGGTTTCTGCGAT 61.035 57.895 6.74 0.00 43.62 4.58
2682 2763 2.034879 AGCGGTGGTTTCTGCGATG 61.035 57.895 0.00 0.00 43.62 3.84
2683 2764 3.039202 GCGGTGGTTTCTGCGATGG 62.039 63.158 0.00 0.00 0.00 3.51
2684 2765 2.877691 GGTGGTTTCTGCGATGGC 59.122 61.111 0.00 0.00 40.52 4.40
2685 2766 2.700773 GGTGGTTTCTGCGATGGCC 61.701 63.158 0.00 0.00 38.85 5.36
2686 2767 2.745884 TGGTTTCTGCGATGGCCG 60.746 61.111 0.00 0.00 38.85 6.13
2687 2768 3.508840 GGTTTCTGCGATGGCCGG 61.509 66.667 0.00 0.00 38.85 6.13
2688 2769 2.746277 GTTTCTGCGATGGCCGGT 60.746 61.111 1.90 0.00 38.85 5.28
2689 2770 2.745884 TTTCTGCGATGGCCGGTG 60.746 61.111 1.90 0.00 38.85 4.94
2703 2784 3.490759 GGTGCACGCGATCTGGTG 61.491 66.667 15.93 0.00 37.22 4.17
2707 2788 2.887568 CACGCGATCTGGTGCCTC 60.888 66.667 15.93 0.00 0.00 4.70
2708 2789 4.148825 ACGCGATCTGGTGCCTCC 62.149 66.667 15.93 0.00 0.00 4.30
2709 2790 4.899239 CGCGATCTGGTGCCTCCC 62.899 72.222 0.00 0.00 34.77 4.30
2710 2791 4.554036 GCGATCTGGTGCCTCCCC 62.554 72.222 0.00 0.00 34.77 4.81
2711 2792 2.765807 CGATCTGGTGCCTCCCCT 60.766 66.667 0.00 0.00 34.77 4.79
2712 2793 2.801631 CGATCTGGTGCCTCCCCTC 61.802 68.421 0.00 0.00 34.77 4.30
2713 2794 2.367512 ATCTGGTGCCTCCCCTCC 60.368 66.667 0.00 0.00 34.77 4.30
2714 2795 2.905676 GATCTGGTGCCTCCCCTCCT 62.906 65.000 0.00 0.00 34.77 3.69
2715 2796 2.905676 ATCTGGTGCCTCCCCTCCTC 62.906 65.000 0.00 0.00 34.77 3.71
2716 2797 4.741239 TGGTGCCTCCCCTCCTCC 62.741 72.222 0.00 0.00 34.77 4.30
2721 2802 3.700350 CCTCCCCTCCTCCCCTGT 61.700 72.222 0.00 0.00 0.00 4.00
2722 2803 2.456840 CTCCCCTCCTCCCCTGTT 59.543 66.667 0.00 0.00 0.00 3.16
2723 2804 1.229984 CTCCCCTCCTCCCCTGTTT 60.230 63.158 0.00 0.00 0.00 2.83
2724 2805 1.541368 TCCCCTCCTCCCCTGTTTG 60.541 63.158 0.00 0.00 0.00 2.93
2725 2806 2.616458 CCCCTCCTCCCCTGTTTGG 61.616 68.421 0.00 0.00 0.00 3.28
2726 2807 2.356667 CCTCCTCCCCTGTTTGGC 59.643 66.667 0.00 0.00 0.00 4.52
2727 2808 2.045926 CTCCTCCCCTGTTTGGCG 60.046 66.667 0.00 0.00 0.00 5.69
2728 2809 2.852075 TCCTCCCCTGTTTGGCGT 60.852 61.111 0.00 0.00 0.00 5.68
2729 2810 2.672996 CCTCCCCTGTTTGGCGTG 60.673 66.667 0.00 0.00 0.00 5.34
2730 2811 3.365265 CTCCCCTGTTTGGCGTGC 61.365 66.667 0.00 0.00 0.00 5.34
2731 2812 4.196778 TCCCCTGTTTGGCGTGCA 62.197 61.111 0.00 0.00 0.00 4.57
2732 2813 3.673484 CCCCTGTTTGGCGTGCAG 61.673 66.667 0.00 0.00 0.00 4.41
2733 2814 3.673484 CCCTGTTTGGCGTGCAGG 61.673 66.667 12.28 12.28 46.83 4.85
2734 2815 2.906897 CCTGTTTGGCGTGCAGGT 60.907 61.111 8.40 0.00 43.42 4.00
2735 2816 2.639286 CTGTTTGGCGTGCAGGTC 59.361 61.111 3.56 3.56 0.00 3.85
2736 2817 2.124529 TGTTTGGCGTGCAGGTCA 60.125 55.556 10.09 10.09 0.00 4.02
2737 2818 1.518056 CTGTTTGGCGTGCAGGTCAT 61.518 55.000 15.28 0.00 0.00 3.06
2738 2819 1.210155 GTTTGGCGTGCAGGTCATC 59.790 57.895 15.28 7.65 0.00 2.92
2739 2820 1.971167 TTTGGCGTGCAGGTCATCC 60.971 57.895 15.28 4.18 0.00 3.51
2740 2821 2.410322 TTTGGCGTGCAGGTCATCCT 62.410 55.000 15.28 0.00 46.37 3.24
2741 2822 2.512515 GGCGTGCAGGTCATCCTC 60.513 66.667 6.05 0.00 43.07 3.71
2742 2823 2.887568 GCGTGCAGGTCATCCTCG 60.888 66.667 8.40 0.00 43.07 4.63
2743 2824 2.573869 CGTGCAGGTCATCCTCGT 59.426 61.111 0.00 0.00 43.07 4.18
2744 2825 1.517257 CGTGCAGGTCATCCTCGTC 60.517 63.158 0.00 0.00 43.07 4.20
2745 2826 1.517257 GTGCAGGTCATCCTCGTCG 60.517 63.158 0.00 0.00 43.07 5.12
2746 2827 2.105128 GCAGGTCATCCTCGTCGG 59.895 66.667 0.00 0.00 43.07 4.79
2748 2829 1.433879 CAGGTCATCCTCGTCGGAC 59.566 63.158 0.00 0.00 46.80 4.79
2749 2830 1.753463 AGGTCATCCTCGTCGGACC 60.753 63.158 8.96 8.96 46.80 4.46
2750 2831 2.408022 GTCATCCTCGTCGGACCG 59.592 66.667 7.84 7.84 46.80 4.79
2751 2832 3.515286 TCATCCTCGTCGGACCGC 61.515 66.667 9.66 3.45 46.80 5.68
2752 2833 4.907034 CATCCTCGTCGGACCGCG 62.907 72.222 20.03 20.03 46.80 6.46
2759 2840 3.818787 GTCGGACCGCGCTTCCTA 61.819 66.667 19.40 8.78 0.00 2.94
2760 2841 3.515286 TCGGACCGCGCTTCCTAG 61.515 66.667 19.40 8.02 0.00 3.02
2761 2842 4.570663 CGGACCGCGCTTCCTAGG 62.571 72.222 19.40 0.82 0.00 3.02
2762 2843 4.222847 GGACCGCGCTTCCTAGGG 62.223 72.222 15.76 5.74 37.39 3.53
2763 2844 3.459063 GACCGCGCTTCCTAGGGT 61.459 66.667 9.46 2.55 36.73 4.34
2764 2845 3.427598 GACCGCGCTTCCTAGGGTC 62.428 68.421 9.46 11.72 40.24 4.46
2765 2846 4.570663 CCGCGCTTCCTAGGGTCG 62.571 72.222 9.46 11.03 36.73 4.79
2767 2848 4.893601 GCGCTTCCTAGGGTCGCC 62.894 72.222 23.38 11.71 39.91 5.54
2768 2849 4.570663 CGCTTCCTAGGGTCGCCG 62.571 72.222 9.46 1.53 0.00 6.46
2769 2850 4.222847 GCTTCCTAGGGTCGCCGG 62.223 72.222 9.46 0.00 0.00 6.13
2770 2851 2.758737 CTTCCTAGGGTCGCCGGT 60.759 66.667 9.46 0.00 0.00 5.28
2771 2852 2.284112 TTCCTAGGGTCGCCGGTT 60.284 61.111 9.46 0.00 0.00 4.44
2772 2853 2.294132 CTTCCTAGGGTCGCCGGTTC 62.294 65.000 9.46 0.00 0.00 3.62
2773 2854 2.758737 CCTAGGGTCGCCGGTTCT 60.759 66.667 1.90 0.00 0.00 3.01
2774 2855 2.494918 CTAGGGTCGCCGGTTCTG 59.505 66.667 1.90 0.00 0.00 3.02
2775 2856 2.283388 TAGGGTCGCCGGTTCTGT 60.283 61.111 1.90 0.00 0.00 3.41
2776 2857 1.001020 TAGGGTCGCCGGTTCTGTA 60.001 57.895 1.90 0.00 0.00 2.74
2777 2858 1.315257 TAGGGTCGCCGGTTCTGTAC 61.315 60.000 1.90 0.00 0.00 2.90
2778 2859 2.652530 GGTCGCCGGTTCTGTACA 59.347 61.111 1.90 0.00 0.00 2.90
2779 2860 1.445582 GGTCGCCGGTTCTGTACAG 60.446 63.158 17.17 17.17 0.00 2.74
2780 2861 1.445582 GTCGCCGGTTCTGTACAGG 60.446 63.158 22.48 8.35 44.10 4.00
2781 2862 1.604308 TCGCCGGTTCTGTACAGGA 60.604 57.895 22.48 11.97 44.02 3.86
2782 2863 1.153823 CGCCGGTTCTGTACAGGAG 60.154 63.158 22.48 11.05 44.02 3.69
2783 2864 1.218316 GCCGGTTCTGTACAGGAGG 59.782 63.158 22.48 19.11 44.02 4.30
2784 2865 1.218316 CCGGTTCTGTACAGGAGGC 59.782 63.158 22.48 10.03 44.02 4.70
2785 2866 1.153823 CGGTTCTGTACAGGAGGCG 60.154 63.158 22.48 0.00 0.00 5.52
2786 2867 1.448013 GGTTCTGTACAGGAGGCGC 60.448 63.158 22.48 0.00 0.00 6.53
2787 2868 1.592223 GTTCTGTACAGGAGGCGCT 59.408 57.895 22.48 0.00 0.00 5.92
2788 2869 0.737715 GTTCTGTACAGGAGGCGCTG 60.738 60.000 22.48 0.00 0.00 5.18
2789 2870 2.507110 TTCTGTACAGGAGGCGCTGC 62.507 60.000 22.48 0.00 0.00 5.25
2790 2871 2.997315 TGTACAGGAGGCGCTGCT 60.997 61.111 7.64 0.48 30.68 4.24
2878 2959 1.843462 TTTTCCGGGAGCCCATTCGA 61.843 55.000 0.00 0.00 35.37 3.71
2955 3036 3.327404 GGGAAGTTGCTCCCGGGA 61.327 66.667 25.06 25.06 45.81 5.14
3001 3082 6.475727 GTGCGCAGAAAAGACTAGTATTGATA 59.524 38.462 12.22 0.00 0.00 2.15
3260 3341 0.252558 GGTTCCTCTGAGTGGGGGTA 60.253 60.000 3.66 0.00 0.00 3.69
3292 3373 4.852118 AGCCTGGCTTATTAGGGATGATAA 59.148 41.667 17.22 0.00 33.89 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.464770 TTTGACTGTTTGATGAAGTTTTTGAG 57.535 30.769 0.00 0.00 0.00 3.02
29 30 9.657419 AGAATTTGACTGTTTGATGAAGTTTTT 57.343 25.926 0.00 0.00 0.00 1.94
121 124 0.179156 GCACCATGAAATCCGCAGTG 60.179 55.000 0.00 0.00 0.00 3.66
155 158 1.996070 AAGGGGGCCGATTTCCTAGC 61.996 60.000 0.00 0.00 0.00 3.42
248 251 4.200874 TGGTGGTTTTAGCCGGTATATTG 58.799 43.478 1.90 0.00 0.00 1.90
250 253 3.712733 TCTGGTGGTTTTAGCCGGTATAT 59.287 43.478 1.90 0.00 0.00 0.86
251 254 3.106054 TCTGGTGGTTTTAGCCGGTATA 58.894 45.455 1.90 0.00 0.00 1.47
255 258 0.676782 CCTCTGGTGGTTTTAGCCGG 60.677 60.000 0.00 0.00 0.00 6.13
282 285 1.010419 CGCTTGTTGAATGCTTGGGC 61.010 55.000 0.00 0.00 39.26 5.36
306 309 1.152440 CCCTCCCGCTCCTCTATGT 60.152 63.158 0.00 0.00 0.00 2.29
403 406 5.871524 TGATTGATCTCGTCTCTTTCCTTTG 59.128 40.000 0.00 0.00 0.00 2.77
642 646 1.079543 CTGGGTTGTCTGAGCCGAG 60.080 63.158 0.00 0.00 40.06 4.63
729 741 2.410262 CGTGTGAGCATTGTCTTCGTTC 60.410 50.000 0.00 0.00 0.00 3.95
766 778 4.201666 TGCAATTTTGTTGTTTCGTCAAGC 60.202 37.500 0.00 0.00 0.00 4.01
785 797 0.963355 GGCCACCTCGGTTAATGCAA 60.963 55.000 0.00 0.00 36.97 4.08
801 813 3.802866 TCCAAATTCACAAGTTTTGGCC 58.197 40.909 0.00 0.00 45.79 5.36
805 817 6.773976 TGAGACTCCAAATTCACAAGTTTT 57.226 33.333 0.00 0.00 0.00 2.43
878 890 8.722394 CGCATTGTAGTTATAGATAGAGAGACA 58.278 37.037 0.00 0.00 0.00 3.41
943 955 1.374252 CTCACACCACACGCCTACC 60.374 63.158 0.00 0.00 0.00 3.18
945 957 1.110518 TCACTCACACCACACGCCTA 61.111 55.000 0.00 0.00 0.00 3.93
949 961 1.068083 AGCTCACTCACACCACACG 59.932 57.895 0.00 0.00 0.00 4.49
951 963 1.001293 GATCAGCTCACTCACACCACA 59.999 52.381 0.00 0.00 0.00 4.17
967 992 2.568509 TGTTGGTGCTGATCTCTGATCA 59.431 45.455 9.50 9.50 0.00 2.92
968 993 2.935201 GTGTTGGTGCTGATCTCTGATC 59.065 50.000 0.00 0.98 0.00 2.92
969 994 2.355513 GGTGTTGGTGCTGATCTCTGAT 60.356 50.000 0.00 0.00 0.00 2.90
970 995 1.002430 GGTGTTGGTGCTGATCTCTGA 59.998 52.381 0.00 0.00 0.00 3.27
971 996 1.446907 GGTGTTGGTGCTGATCTCTG 58.553 55.000 0.00 0.00 0.00 3.35
972 997 0.036952 CGGTGTTGGTGCTGATCTCT 60.037 55.000 0.00 0.00 0.00 3.10
973 998 1.021390 CCGGTGTTGGTGCTGATCTC 61.021 60.000 0.00 0.00 0.00 2.75
974 999 1.003355 CCGGTGTTGGTGCTGATCT 60.003 57.895 0.00 0.00 0.00 2.75
1319 1347 2.056223 AATGGAGTGCCTGCCATGC 61.056 57.895 0.00 0.00 43.85 4.06
1320 1348 0.681887 TCAATGGAGTGCCTGCCATG 60.682 55.000 0.00 0.00 43.85 3.66
1321 1349 0.682209 GTCAATGGAGTGCCTGCCAT 60.682 55.000 0.00 0.00 46.49 4.40
1322 1350 1.303561 GTCAATGGAGTGCCTGCCA 60.304 57.895 0.00 0.00 38.78 4.92
1323 1351 2.401766 CGTCAATGGAGTGCCTGCC 61.402 63.158 0.00 0.00 34.31 4.85
1324 1352 1.375908 TCGTCAATGGAGTGCCTGC 60.376 57.895 0.00 0.00 34.31 4.85
1325 1353 0.036952 AGTCGTCAATGGAGTGCCTG 60.037 55.000 0.00 0.00 34.31 4.85
1326 1354 0.247736 GAGTCGTCAATGGAGTGCCT 59.752 55.000 0.00 0.00 34.31 4.75
1327 1355 0.247736 AGAGTCGTCAATGGAGTGCC 59.752 55.000 0.00 0.00 0.00 5.01
1328 1356 1.203523 AGAGAGTCGTCAATGGAGTGC 59.796 52.381 0.00 0.00 0.00 4.40
1329 1357 2.752354 AGAGAGAGTCGTCAATGGAGTG 59.248 50.000 0.00 0.00 0.00 3.51
1330 1358 3.080300 AGAGAGAGTCGTCAATGGAGT 57.920 47.619 0.00 0.00 0.00 3.85
1331 1359 3.003275 GCTAGAGAGAGTCGTCAATGGAG 59.997 52.174 0.00 0.00 0.00 3.86
1332 1360 2.946329 GCTAGAGAGAGTCGTCAATGGA 59.054 50.000 0.00 0.00 0.00 3.41
1333 1361 2.948979 AGCTAGAGAGAGTCGTCAATGG 59.051 50.000 0.00 0.00 0.00 3.16
1334 1362 4.814234 AGTAGCTAGAGAGAGTCGTCAATG 59.186 45.833 0.00 0.00 0.00 2.82
1335 1363 5.031066 AGTAGCTAGAGAGAGTCGTCAAT 57.969 43.478 0.00 0.00 0.00 2.57
1336 1364 4.435425 GAGTAGCTAGAGAGAGTCGTCAA 58.565 47.826 0.00 0.00 0.00 3.18
1337 1365 3.489568 CGAGTAGCTAGAGAGAGTCGTCA 60.490 52.174 0.00 0.00 0.00 4.35
1338 1366 3.047796 CGAGTAGCTAGAGAGAGTCGTC 58.952 54.545 0.00 0.00 0.00 4.20
1339 1367 2.223876 CCGAGTAGCTAGAGAGAGTCGT 60.224 54.545 8.03 0.00 0.00 4.34
1340 1368 2.223876 ACCGAGTAGCTAGAGAGAGTCG 60.224 54.545 0.00 0.00 0.00 4.18
1341 1369 3.464111 ACCGAGTAGCTAGAGAGAGTC 57.536 52.381 0.00 0.00 0.00 3.36
1342 1370 3.198200 TGAACCGAGTAGCTAGAGAGAGT 59.802 47.826 0.00 0.00 0.00 3.24
1343 1371 3.799366 TGAACCGAGTAGCTAGAGAGAG 58.201 50.000 0.00 0.00 0.00 3.20
1344 1372 3.908643 TGAACCGAGTAGCTAGAGAGA 57.091 47.619 0.00 0.00 0.00 3.10
1345 1373 3.880490 ACATGAACCGAGTAGCTAGAGAG 59.120 47.826 0.00 0.00 0.00 3.20
1346 1374 3.887352 ACATGAACCGAGTAGCTAGAGA 58.113 45.455 0.00 0.00 0.00 3.10
1347 1375 5.694816 CATACATGAACCGAGTAGCTAGAG 58.305 45.833 0.00 0.00 0.00 2.43
1348 1376 4.023107 GCATACATGAACCGAGTAGCTAGA 60.023 45.833 0.00 0.00 0.00 2.43
1349 1377 4.230657 GCATACATGAACCGAGTAGCTAG 58.769 47.826 0.00 0.00 0.00 3.42
1350 1378 3.634910 TGCATACATGAACCGAGTAGCTA 59.365 43.478 0.00 0.00 0.00 3.32
1351 1379 2.430694 TGCATACATGAACCGAGTAGCT 59.569 45.455 0.00 0.00 0.00 3.32
1352 1380 2.821546 TGCATACATGAACCGAGTAGC 58.178 47.619 0.00 0.00 0.00 3.58
1365 1393 2.488937 CAGTTTCTGTGCCATGCATACA 59.511 45.455 0.00 0.00 41.91 2.29
1367 1395 3.070476 TCAGTTTCTGTGCCATGCATA 57.930 42.857 0.00 0.00 41.91 3.14
1378 1406 5.291178 TCAAATGCAAACCATCAGTTTCTG 58.709 37.500 0.00 0.00 45.85 3.02
1379 1407 5.534207 TCAAATGCAAACCATCAGTTTCT 57.466 34.783 0.00 0.00 45.85 2.52
1393 1440 0.971959 GGGTGGCTGGATCAAATGCA 60.972 55.000 0.00 0.00 0.00 3.96
1529 1580 1.446792 CAGCGCTCACCACGATCTT 60.447 57.895 7.13 0.00 0.00 2.40
1547 1598 0.458543 TCGATCTTGGAAGTGCGAGC 60.459 55.000 0.00 0.00 32.37 5.03
1548 1599 1.656095 GTTCGATCTTGGAAGTGCGAG 59.344 52.381 0.00 0.00 35.47 5.03
1549 1600 1.000394 TGTTCGATCTTGGAAGTGCGA 60.000 47.619 0.00 0.00 33.51 5.10
1551 1602 2.413453 GAGTGTTCGATCTTGGAAGTGC 59.587 50.000 0.00 0.00 0.00 4.40
1565 1646 1.531578 GGGCTTTCAAGTCGAGTGTTC 59.468 52.381 0.00 0.00 0.00 3.18
1568 1649 1.813513 ATGGGCTTTCAAGTCGAGTG 58.186 50.000 0.00 0.00 0.00 3.51
1570 1651 3.600388 ACTAATGGGCTTTCAAGTCGAG 58.400 45.455 0.00 0.00 0.00 4.04
1571 1652 3.695830 ACTAATGGGCTTTCAAGTCGA 57.304 42.857 0.00 0.00 0.00 4.20
1573 1654 3.367395 GGCAACTAATGGGCTTTCAAGTC 60.367 47.826 0.00 0.00 0.00 3.01
1574 1655 2.562738 GGCAACTAATGGGCTTTCAAGT 59.437 45.455 0.00 0.00 0.00 3.16
1575 1656 3.236632 GGCAACTAATGGGCTTTCAAG 57.763 47.619 0.00 0.00 0.00 3.02
1590 1671 3.368843 GCAATGTAAATCAGCAAGGCAAC 59.631 43.478 0.00 0.00 0.00 4.17
1591 1672 3.587923 GCAATGTAAATCAGCAAGGCAA 58.412 40.909 0.00 0.00 0.00 4.52
1592 1673 2.094078 GGCAATGTAAATCAGCAAGGCA 60.094 45.455 0.00 0.00 0.00 4.75
1593 1674 2.094078 TGGCAATGTAAATCAGCAAGGC 60.094 45.455 0.00 0.00 0.00 4.35
1594 1675 3.872511 TGGCAATGTAAATCAGCAAGG 57.127 42.857 0.00 0.00 0.00 3.61
1595 1676 4.116961 CCATGGCAATGTAAATCAGCAAG 58.883 43.478 0.00 0.00 31.27 4.01
1596 1677 3.679361 GCCATGGCAATGTAAATCAGCAA 60.679 43.478 32.08 0.00 41.49 3.91
1597 1678 2.159071 GCCATGGCAATGTAAATCAGCA 60.159 45.455 32.08 0.00 41.49 4.41
1598 1679 2.476821 GCCATGGCAATGTAAATCAGC 58.523 47.619 32.08 0.00 41.49 4.26
1611 1692 1.268896 CGACTGATGAAATGCCATGGC 60.269 52.381 30.54 30.54 42.35 4.40
1612 1693 1.335810 CCGACTGATGAAATGCCATGG 59.664 52.381 7.63 7.63 0.00 3.66
1613 1694 2.019249 ACCGACTGATGAAATGCCATG 58.981 47.619 0.00 0.00 0.00 3.66
1614 1695 2.425143 ACCGACTGATGAAATGCCAT 57.575 45.000 0.00 0.00 0.00 4.40
1824 1905 1.131218 CGCACTGCACGATGAACTG 59.869 57.895 1.11 0.00 0.00 3.16
1960 2041 1.070105 TTGTACAGGGACACGCACC 59.930 57.895 0.00 0.00 0.00 5.01
2246 2327 1.748122 GTAGCCCGTCTCGGTGAGA 60.748 63.158 7.40 0.00 46.80 3.27
2314 2395 5.934625 AGAGATTGTAAAGTTTGATGACGCT 59.065 36.000 0.00 0.00 0.00 5.07
2344 2425 7.946655 ATTCGTACTTGTCCATACATACATG 57.053 36.000 0.00 0.00 34.97 3.21
2371 2452 2.040884 AGGAGGGGCGGCTATCAA 60.041 61.111 9.56 0.00 0.00 2.57
2372 2453 2.524394 GAGGAGGGGCGGCTATCA 60.524 66.667 9.56 0.00 0.00 2.15
2373 2454 3.315140 GGAGGAGGGGCGGCTATC 61.315 72.222 9.56 7.19 0.00 2.08
2374 2455 3.837213 GAGGAGGAGGGGCGGCTAT 62.837 68.421 9.56 0.00 0.00 2.97
2375 2456 4.541648 GAGGAGGAGGGGCGGCTA 62.542 72.222 9.56 0.00 0.00 3.93
2380 2461 4.890306 GGGAGGAGGAGGAGGGGC 62.890 77.778 0.00 0.00 0.00 5.80
2381 2462 3.039526 AGGGAGGAGGAGGAGGGG 61.040 72.222 0.00 0.00 0.00 4.79
2382 2463 2.612251 GAGGGAGGAGGAGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
2383 2464 2.612251 GGAGGGAGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
2384 2465 2.328589 TGGGAGGGAGGAGGAGGAG 61.329 68.421 0.00 0.00 0.00 3.69
2385 2466 2.204624 TGGGAGGGAGGAGGAGGA 60.205 66.667 0.00 0.00 0.00 3.71
2386 2467 2.041405 GTGGGAGGGAGGAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
2387 2468 2.041405 GGTGGGAGGGAGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
2388 2469 3.695825 GGGTGGGAGGGAGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
2389 2470 4.825679 GGGGTGGGAGGGAGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
2390 2471 2.319410 CTAGGGGTGGGAGGGAGGAG 62.319 70.000 0.00 0.00 0.00 3.69
2391 2472 2.204721 TAGGGGTGGGAGGGAGGA 60.205 66.667 0.00 0.00 0.00 3.71
2392 2473 2.287251 CTAGGGGTGGGAGGGAGG 59.713 72.222 0.00 0.00 0.00 4.30
2393 2474 1.075151 GTCTAGGGGTGGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
2394 2475 1.865045 TGTCTAGGGGTGGGAGGGA 60.865 63.158 0.00 0.00 0.00 4.20
2395 2476 1.689582 GTGTCTAGGGGTGGGAGGG 60.690 68.421 0.00 0.00 0.00 4.30
2396 2477 1.689582 GGTGTCTAGGGGTGGGAGG 60.690 68.421 0.00 0.00 0.00 4.30
2397 2478 1.689582 GGGTGTCTAGGGGTGGGAG 60.690 68.421 0.00 0.00 0.00 4.30
2398 2479 2.453054 GGGTGTCTAGGGGTGGGA 59.547 66.667 0.00 0.00 0.00 4.37
2399 2480 2.691252 GGGGTGTCTAGGGGTGGG 60.691 72.222 0.00 0.00 0.00 4.61
2400 2481 1.689582 GAGGGGTGTCTAGGGGTGG 60.690 68.421 0.00 0.00 0.00 4.61
2401 2482 1.689582 GGAGGGGTGTCTAGGGGTG 60.690 68.421 0.00 0.00 0.00 4.61
2402 2483 2.785703 GGAGGGGTGTCTAGGGGT 59.214 66.667 0.00 0.00 0.00 4.95
2403 2484 2.040779 GGGAGGGGTGTCTAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
2404 2485 1.075151 GAGGGAGGGGTGTCTAGGG 60.075 68.421 0.00 0.00 0.00 3.53
2405 2486 1.075151 GGAGGGAGGGGTGTCTAGG 60.075 68.421 0.00 0.00 0.00 3.02
2406 2487 0.105913 GAGGAGGGAGGGGTGTCTAG 60.106 65.000 0.00 0.00 0.00 2.43
2407 2488 1.591280 GGAGGAGGGAGGGGTGTCTA 61.591 65.000 0.00 0.00 0.00 2.59
2408 2489 2.781406 GAGGAGGGAGGGGTGTCT 59.219 66.667 0.00 0.00 0.00 3.41
2409 2490 2.365768 GGAGGAGGGAGGGGTGTC 60.366 72.222 0.00 0.00 0.00 3.67
2410 2491 2.876858 AGGAGGAGGGAGGGGTGT 60.877 66.667 0.00 0.00 0.00 4.16
2411 2492 2.041405 GAGGAGGAGGGAGGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
2412 2493 3.369388 GGAGGAGGAGGGAGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
2413 2494 4.179599 GGGAGGAGGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
2414 2495 1.705450 TAGGGAGGAGGAGGGAGGG 60.705 68.421 0.00 0.00 0.00 4.30
2415 2496 1.857777 CTAGGGAGGAGGAGGGAGG 59.142 68.421 0.00 0.00 0.00 4.30
2416 2497 1.155155 GCTAGGGAGGAGGAGGGAG 59.845 68.421 0.00 0.00 0.00 4.30
2417 2498 2.404750 GGCTAGGGAGGAGGAGGGA 61.405 68.421 0.00 0.00 0.00 4.20
2418 2499 2.202899 GGCTAGGGAGGAGGAGGG 59.797 72.222 0.00 0.00 0.00 4.30
2419 2500 2.203567 CGGCTAGGGAGGAGGAGG 60.204 72.222 0.00 0.00 0.00 4.30
2420 2501 2.915137 GCGGCTAGGGAGGAGGAG 60.915 72.222 0.00 0.00 0.00 3.69
2421 2502 4.541648 GGCGGCTAGGGAGGAGGA 62.542 72.222 0.00 0.00 0.00 3.71
2430 2511 4.548513 AGGAGGAGGGGCGGCTAG 62.549 72.222 9.56 0.00 0.00 3.42
2431 2512 4.541648 GAGGAGGAGGGGCGGCTA 62.542 72.222 9.56 0.00 0.00 3.93
2434 2515 3.157949 GAAGAGGAGGAGGGGCGG 61.158 72.222 0.00 0.00 0.00 6.13
2435 2516 3.157949 GGAAGAGGAGGAGGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
2436 2517 2.770475 GGGAAGAGGAGGAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
2437 2518 0.692756 GAAGGGAAGAGGAGGAGGGG 60.693 65.000 0.00 0.00 0.00 4.79
2438 2519 0.692756 GGAAGGGAAGAGGAGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
2439 2520 0.341609 AGGAAGGGAAGAGGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
2440 2521 1.788229 GAGGAAGGGAAGAGGAGGAG 58.212 60.000 0.00 0.00 0.00 3.69
2441 2522 0.033011 CGAGGAAGGGAAGAGGAGGA 60.033 60.000 0.00 0.00 0.00 3.71
2442 2523 1.681486 GCGAGGAAGGGAAGAGGAGG 61.681 65.000 0.00 0.00 0.00 4.30
2443 2524 1.681486 GGCGAGGAAGGGAAGAGGAG 61.681 65.000 0.00 0.00 0.00 3.69
2444 2525 1.686110 GGCGAGGAAGGGAAGAGGA 60.686 63.158 0.00 0.00 0.00 3.71
2445 2526 2.904131 GGCGAGGAAGGGAAGAGG 59.096 66.667 0.00 0.00 0.00 3.69
2446 2527 2.496817 CGGCGAGGAAGGGAAGAG 59.503 66.667 0.00 0.00 0.00 2.85
2447 2528 3.771160 GCGGCGAGGAAGGGAAGA 61.771 66.667 12.98 0.00 0.00 2.87
2448 2529 4.840005 GGCGGCGAGGAAGGGAAG 62.840 72.222 12.98 0.00 0.00 3.46
2530 2611 4.020617 TTCCCCACGCAGAGGCAG 62.021 66.667 0.00 0.00 41.24 4.85
2531 2612 4.329545 GTTCCCCACGCAGAGGCA 62.330 66.667 0.00 0.00 41.24 4.75
2532 2613 3.959991 GAGTTCCCCACGCAGAGGC 62.960 68.421 0.00 0.00 36.77 4.70
2533 2614 2.266055 GAGTTCCCCACGCAGAGG 59.734 66.667 0.00 0.00 38.25 3.69
2534 2615 2.266055 GGAGTTCCCCACGCAGAG 59.734 66.667 0.00 0.00 0.00 3.35
2535 2616 3.691342 CGGAGTTCCCCACGCAGA 61.691 66.667 0.00 0.00 0.00 4.26
2536 2617 4.760047 CCGGAGTTCCCCACGCAG 62.760 72.222 0.00 0.00 0.00 5.18
2538 2619 3.735037 GATCCGGAGTTCCCCACGC 62.735 68.421 11.34 0.00 0.00 5.34
2539 2620 2.058595 AGATCCGGAGTTCCCCACG 61.059 63.158 11.34 0.00 0.00 4.94
2540 2621 1.522569 CAGATCCGGAGTTCCCCAC 59.477 63.158 11.34 0.00 0.00 4.61
2541 2622 1.689233 CCAGATCCGGAGTTCCCCA 60.689 63.158 11.34 0.00 0.00 4.96
2542 2623 1.382695 TCCAGATCCGGAGTTCCCC 60.383 63.158 11.34 0.00 0.00 4.81
2543 2624 2.128729 CTCCAGATCCGGAGTTCCC 58.871 63.158 15.88 0.00 46.48 3.97
2563 2644 3.830192 CTTGCCAATGGAGCCGCC 61.830 66.667 2.05 0.00 37.10 6.13
2564 2645 3.830192 CCTTGCCAATGGAGCCGC 61.830 66.667 2.05 0.00 0.00 6.53
2565 2646 3.830192 GCCTTGCCAATGGAGCCG 61.830 66.667 2.05 0.00 0.00 5.52
2566 2647 2.681064 TGCCTTGCCAATGGAGCC 60.681 61.111 2.05 0.00 0.00 4.70
2567 2648 2.575461 GTGCCTTGCCAATGGAGC 59.425 61.111 2.05 0.00 0.00 4.70
2568 2649 2.703798 CCGTGCCTTGCCAATGGAG 61.704 63.158 2.05 0.00 0.00 3.86
2569 2650 2.676121 CCGTGCCTTGCCAATGGA 60.676 61.111 2.05 0.00 0.00 3.41
2570 2651 4.440127 GCCGTGCCTTGCCAATGG 62.440 66.667 0.00 0.00 0.00 3.16
2571 2652 4.440127 GGCCGTGCCTTGCCAATG 62.440 66.667 7.58 0.00 46.69 2.82
2599 2680 4.082523 AGATCCACCACCCGCACG 62.083 66.667 0.00 0.00 0.00 5.34
2600 2681 2.436646 CAGATCCACCACCCGCAC 60.437 66.667 0.00 0.00 0.00 5.34
2601 2682 3.716195 CCAGATCCACCACCCGCA 61.716 66.667 0.00 0.00 0.00 5.69
2603 2684 4.838152 CGCCAGATCCACCACCCG 62.838 72.222 0.00 0.00 0.00 5.28
2604 2685 3.682292 GACGCCAGATCCACCACCC 62.682 68.421 0.00 0.00 0.00 4.61
2605 2686 2.125106 GACGCCAGATCCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
2606 2687 2.125106 GGACGCCAGATCCACCAC 60.125 66.667 0.00 0.00 36.15 4.16
2607 2688 3.399181 GGGACGCCAGATCCACCA 61.399 66.667 0.00 0.00 38.06 4.17
2638 2719 3.400599 AATGACCACCGGATCCCGC 62.401 63.158 9.46 0.00 46.86 6.13
2640 2721 1.152963 CCAATGACCACCGGATCCC 60.153 63.158 9.46 0.00 0.00 3.85
2641 2722 1.823899 GCCAATGACCACCGGATCC 60.824 63.158 9.46 0.00 0.00 3.36
2642 2723 2.180204 CGCCAATGACCACCGGATC 61.180 63.158 9.46 2.89 0.00 3.36
2643 2724 2.124736 CGCCAATGACCACCGGAT 60.125 61.111 9.46 0.00 0.00 4.18
2644 2725 4.402528 CCGCCAATGACCACCGGA 62.403 66.667 9.46 0.00 41.34 5.14
2645 2726 4.715523 ACCGCCAATGACCACCGG 62.716 66.667 0.00 0.00 44.19 5.28
2646 2727 3.124921 GACCGCCAATGACCACCG 61.125 66.667 0.00 0.00 0.00 4.94
2647 2728 2.033448 TGACCGCCAATGACCACC 59.967 61.111 0.00 0.00 0.00 4.61
2648 2729 2.690778 GCTGACCGCCAATGACCAC 61.691 63.158 0.00 0.00 0.00 4.16
2649 2730 2.359850 GCTGACCGCCAATGACCA 60.360 61.111 0.00 0.00 0.00 4.02
2650 2731 3.499737 CGCTGACCGCCAATGACC 61.500 66.667 0.00 0.00 34.21 4.02
2651 2732 3.499737 CCGCTGACCGCCAATGAC 61.500 66.667 0.00 0.00 35.03 3.06
2652 2733 4.015406 ACCGCTGACCGCCAATGA 62.015 61.111 0.00 0.00 35.03 2.57
2653 2734 3.803082 CACCGCTGACCGCCAATG 61.803 66.667 0.00 0.00 35.03 2.82
2658 2739 3.723348 GAAACCACCGCTGACCGC 61.723 66.667 0.00 0.00 35.03 5.68
2659 2740 2.030562 AGAAACCACCGCTGACCG 59.969 61.111 0.00 0.00 0.00 4.79
2660 2741 2.617274 GCAGAAACCACCGCTGACC 61.617 63.158 0.00 0.00 0.00 4.02
2661 2742 2.946762 GCAGAAACCACCGCTGAC 59.053 61.111 0.00 0.00 0.00 3.51
2662 2743 2.449031 ATCGCAGAAACCACCGCTGA 62.449 55.000 0.00 0.00 43.58 4.26
2663 2744 2.034879 ATCGCAGAAACCACCGCTG 61.035 57.895 0.00 0.00 43.58 5.18
2664 2745 2.034879 CATCGCAGAAACCACCGCT 61.035 57.895 0.00 0.00 43.58 5.52
2665 2746 2.480555 CATCGCAGAAACCACCGC 59.519 61.111 0.00 0.00 43.58 5.68
2666 2747 3.039202 GCCATCGCAGAAACCACCG 62.039 63.158 0.00 0.00 43.58 4.94
2667 2748 2.700773 GGCCATCGCAGAAACCACC 61.701 63.158 0.00 0.00 43.58 4.61
2668 2749 2.877691 GGCCATCGCAGAAACCAC 59.122 61.111 0.00 0.00 43.58 4.16
2669 2750 2.745884 CGGCCATCGCAGAAACCA 60.746 61.111 2.24 0.00 43.58 3.67
2670 2751 3.508840 CCGGCCATCGCAGAAACC 61.509 66.667 2.24 0.00 43.58 3.27
2671 2752 2.746277 ACCGGCCATCGCAGAAAC 60.746 61.111 0.00 0.00 43.58 2.78
2672 2753 2.745884 CACCGGCCATCGCAGAAA 60.746 61.111 0.00 0.00 43.58 2.52
2686 2767 3.490759 CACCAGATCGCGTGCACC 61.491 66.667 12.15 3.09 0.00 5.01
2690 2771 2.887568 GAGGCACCAGATCGCGTG 60.888 66.667 5.77 10.00 0.00 5.34
2691 2772 4.148825 GGAGGCACCAGATCGCGT 62.149 66.667 5.77 0.00 38.79 6.01
2692 2773 4.899239 GGGAGGCACCAGATCGCG 62.899 72.222 0.00 0.00 41.20 5.87
2693 2774 4.554036 GGGGAGGCACCAGATCGC 62.554 72.222 2.69 0.00 41.20 4.58
2694 2775 2.765807 AGGGGAGGCACCAGATCG 60.766 66.667 2.69 0.00 41.20 3.69
2695 2776 2.447714 GGAGGGGAGGCACCAGATC 61.448 68.421 2.69 0.00 41.20 2.75
2696 2777 2.367512 GGAGGGGAGGCACCAGAT 60.368 66.667 2.69 0.00 41.20 2.90
2697 2778 3.615811 AGGAGGGGAGGCACCAGA 61.616 66.667 2.69 0.00 41.20 3.86
2698 2779 3.086600 GAGGAGGGGAGGCACCAG 61.087 72.222 2.69 0.00 41.20 4.00
2699 2780 4.741239 GGAGGAGGGGAGGCACCA 62.741 72.222 2.69 0.00 41.20 4.17
2704 2785 2.789979 AAACAGGGGAGGAGGGGAGG 62.790 65.000 0.00 0.00 0.00 4.30
2705 2786 1.229984 AAACAGGGGAGGAGGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
2706 2787 1.541368 CAAACAGGGGAGGAGGGGA 60.541 63.158 0.00 0.00 0.00 4.81
2707 2788 2.616458 CCAAACAGGGGAGGAGGGG 61.616 68.421 0.00 0.00 0.00 4.79
2708 2789 3.090765 CCAAACAGGGGAGGAGGG 58.909 66.667 0.00 0.00 0.00 4.30
2709 2790 2.356667 GCCAAACAGGGGAGGAGG 59.643 66.667 0.00 0.00 38.09 4.30
2716 2797 3.673484 CCTGCACGCCAAACAGGG 61.673 66.667 0.19 0.00 45.97 4.45
2718 2799 1.518056 ATGACCTGCACGCCAAACAG 61.518 55.000 0.00 0.00 0.00 3.16
2719 2800 1.514678 GATGACCTGCACGCCAAACA 61.515 55.000 0.00 0.00 0.00 2.83
2720 2801 1.210155 GATGACCTGCACGCCAAAC 59.790 57.895 0.00 0.00 0.00 2.93
2721 2802 1.971167 GGATGACCTGCACGCCAAA 60.971 57.895 0.00 0.00 0.00 3.28
2722 2803 2.359850 GGATGACCTGCACGCCAA 60.360 61.111 0.00 0.00 0.00 4.52
2723 2804 3.321648 AGGATGACCTGCACGCCA 61.322 61.111 0.00 0.00 45.92 5.69
2742 2823 3.753070 CTAGGAAGCGCGGTCCGAC 62.753 68.421 22.47 5.98 40.36 4.79
2743 2824 3.515286 CTAGGAAGCGCGGTCCGA 61.515 66.667 22.47 18.07 40.36 4.55
2744 2825 4.570663 CCTAGGAAGCGCGGTCCG 62.571 72.222 22.47 6.99 40.36 4.79
2745 2826 4.222847 CCCTAGGAAGCGCGGTCC 62.223 72.222 21.61 21.61 35.17 4.46
2746 2827 3.427598 GACCCTAGGAAGCGCGGTC 62.428 68.421 12.91 11.72 36.52 4.79
2747 2828 3.459063 GACCCTAGGAAGCGCGGT 61.459 66.667 11.48 4.23 0.00 5.68
2748 2829 4.570663 CGACCCTAGGAAGCGCGG 62.571 72.222 11.48 0.00 0.00 6.46
2750 2831 4.893601 GGCGACCCTAGGAAGCGC 62.894 72.222 25.05 25.05 46.20 5.92
2751 2832 4.570663 CGGCGACCCTAGGAAGCG 62.571 72.222 11.48 11.72 31.97 4.68
2752 2833 4.222847 CCGGCGACCCTAGGAAGC 62.223 72.222 11.48 12.24 0.00 3.86
2753 2834 2.294132 GAACCGGCGACCCTAGGAAG 62.294 65.000 11.48 1.77 0.00 3.46
2754 2835 2.284112 AACCGGCGACCCTAGGAA 60.284 61.111 11.48 0.00 0.00 3.36
2755 2836 2.757099 GAACCGGCGACCCTAGGA 60.757 66.667 11.48 0.00 0.00 2.94
2756 2837 2.758737 AGAACCGGCGACCCTAGG 60.759 66.667 9.30 0.06 0.00 3.02
2757 2838 1.033746 TACAGAACCGGCGACCCTAG 61.034 60.000 9.30 0.00 0.00 3.02
2758 2839 1.001020 TACAGAACCGGCGACCCTA 60.001 57.895 9.30 0.00 0.00 3.53
2759 2840 2.283388 TACAGAACCGGCGACCCT 60.283 61.111 9.30 0.00 0.00 4.34
2760 2841 2.125793 GTACAGAACCGGCGACCC 60.126 66.667 9.30 0.00 0.00 4.46
2761 2842 1.445582 CTGTACAGAACCGGCGACC 60.446 63.158 18.45 0.00 0.00 4.79
2762 2843 1.445582 CCTGTACAGAACCGGCGAC 60.446 63.158 24.68 0.00 0.00 5.19
2763 2844 1.592400 CTCCTGTACAGAACCGGCGA 61.592 60.000 24.68 9.72 32.70 5.54
2764 2845 1.153823 CTCCTGTACAGAACCGGCG 60.154 63.158 24.68 0.00 32.70 6.46
2765 2846 1.218316 CCTCCTGTACAGAACCGGC 59.782 63.158 24.68 0.00 32.70 6.13
2766 2847 1.218316 GCCTCCTGTACAGAACCGG 59.782 63.158 24.68 17.34 33.90 5.28
2767 2848 1.153823 CGCCTCCTGTACAGAACCG 60.154 63.158 24.68 15.72 0.00 4.44
2768 2849 1.448013 GCGCCTCCTGTACAGAACC 60.448 63.158 24.68 8.34 0.00 3.62
2769 2850 0.737715 CAGCGCCTCCTGTACAGAAC 60.738 60.000 24.68 9.07 0.00 3.01
2770 2851 1.591703 CAGCGCCTCCTGTACAGAA 59.408 57.895 24.68 2.15 0.00 3.02
2771 2852 3.006756 GCAGCGCCTCCTGTACAGA 62.007 63.158 24.68 9.38 35.28 3.41
2772 2853 2.510238 GCAGCGCCTCCTGTACAG 60.510 66.667 16.34 16.34 35.28 2.74
2773 2854 2.997315 AGCAGCGCCTCCTGTACA 60.997 61.111 2.29 0.00 35.28 2.90
2774 2855 2.510238 CAGCAGCGCCTCCTGTAC 60.510 66.667 2.29 0.00 35.28 2.90
2775 2856 3.774528 CCAGCAGCGCCTCCTGTA 61.775 66.667 2.29 0.00 35.28 2.74
2789 2870 2.593468 CTATCACACCCCGCCACCAG 62.593 65.000 0.00 0.00 0.00 4.00
2790 2871 2.608059 TATCACACCCCGCCACCA 60.608 61.111 0.00 0.00 0.00 4.17
2791 2872 2.189521 CTATCACACCCCGCCACC 59.810 66.667 0.00 0.00 0.00 4.61
2792 2873 2.513897 GCTATCACACCCCGCCAC 60.514 66.667 0.00 0.00 0.00 5.01
2793 2874 3.792736 GGCTATCACACCCCGCCA 61.793 66.667 0.00 0.00 40.41 5.69
2794 2875 3.480133 AGGCTATCACACCCCGCC 61.480 66.667 0.00 0.00 40.99 6.13
2795 2876 2.203070 CAGGCTATCACACCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
2796 2877 2.505982 CCAGGCTATCACACCCCG 59.494 66.667 0.00 0.00 0.00 5.73
2878 2959 4.035208 CACGCTTAACTTTGGAGTTCTGTT 59.965 41.667 0.00 0.00 44.75 3.16
2955 3036 0.036105 TTGTCCTCACTCATGCGCAT 60.036 50.000 19.28 19.28 0.00 4.73
3001 3082 2.269940 GGATCTATACTGGCCCCACAT 58.730 52.381 0.00 0.00 0.00 3.21
3260 3341 6.126652 CCCTAATAAGCCAGGCTATCACATAT 60.127 42.308 16.56 4.68 38.25 1.78



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.