Multiple sequence alignment - TraesCS1A01G135900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1A01G135900
chr1A
100.000
3310
0
0
1
3310
212017507
212020816
0.000000e+00
6113.0
1
TraesCS1A01G135900
chr1A
96.863
510
15
1
2801
3310
285394385
285393877
0.000000e+00
852.0
2
TraesCS1A01G135900
chr1D
91.299
2379
139
43
18
2371
190481688
190479353
0.000000e+00
3184.0
3
TraesCS1A01G135900
chr1D
91.395
430
29
5
2376
2801
457052197
457051772
1.710000e-162
582.0
4
TraesCS1A01G135900
chr1B
91.475
1736
88
41
665
2371
263948818
263947114
0.000000e+00
2331.0
5
TraesCS1A01G135900
chr1B
95.729
679
25
3
1
677
263979933
263979257
0.000000e+00
1090.0
6
TraesCS1A01G135900
chr7A
97.642
509
11
1
2802
3310
343243424
343242917
0.000000e+00
872.0
7
TraesCS1A01G135900
chr7A
96.857
509
14
2
2802
3310
45331191
45331697
0.000000e+00
850.0
8
TraesCS1A01G135900
chr7A
96.667
510
15
2
2801
3310
575231673
575232180
0.000000e+00
846.0
9
TraesCS1A01G135900
chr7A
92.566
417
30
1
2385
2801
239546820
239547235
6.110000e-167
597.0
10
TraesCS1A01G135900
chr6A
97.642
509
11
1
2802
3310
96315832
96315325
0.000000e+00
872.0
11
TraesCS1A01G135900
chr6A
97.047
508
13
2
2803
3310
410038200
410037695
0.000000e+00
854.0
12
TraesCS1A01G135900
chr6A
96.491
513
16
2
2798
3310
151445126
151445636
0.000000e+00
846.0
13
TraesCS1A01G135900
chr5A
97.053
509
14
1
2802
3310
482442150
482442657
0.000000e+00
856.0
14
TraesCS1A01G135900
chr5A
90.385
52
5
0
1258
1309
135154552
135154603
5.930000e-08
69.4
15
TraesCS1A01G135900
chr2A
96.857
509
15
1
2800
3308
281423722
281423215
0.000000e+00
850.0
16
TraesCS1A01G135900
chr2A
72.945
292
58
17
1726
2004
716488138
716487855
7.610000e-12
82.4
17
TraesCS1A01G135900
chr6D
94.145
427
24
1
2376
2802
22237519
22237094
0.000000e+00
649.0
18
TraesCS1A01G135900
chr6D
91.014
434
27
5
2376
2799
413279321
413278890
2.860000e-160
575.0
19
TraesCS1A01G135900
chr5D
92.471
425
26
3
2377
2801
109940647
109941065
1.310000e-168
603.0
20
TraesCS1A01G135900
chr7D
92.235
425
27
3
2377
2801
144158591
144159009
6.110000e-167
597.0
21
TraesCS1A01G135900
chr2D
92.000
425
30
2
2377
2801
461081647
461081227
7.910000e-166
593.0
22
TraesCS1A01G135900
chr2D
91.765
425
31
2
2377
2801
55161018
55161438
3.680000e-164
588.0
23
TraesCS1A01G135900
chr2D
73.333
255
49
15
1726
1968
578937091
578936844
3.540000e-10
76.8
24
TraesCS1A01G135900
chr3D
91.101
427
30
5
2376
2801
20212990
20213409
3.710000e-159
571.0
25
TraesCS1A01G135900
chr2B
73.622
254
50
16
1726
1968
695859745
695859498
7.610000e-12
82.4
26
TraesCS1A01G135900
chr5B
90.385
52
5
0
1258
1309
136018626
136018677
5.930000e-08
69.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1A01G135900
chr1A
212017507
212020816
3309
False
6113
6113
100.000
1
3310
1
chr1A.!!$F1
3309
1
TraesCS1A01G135900
chr1A
285393877
285394385
508
True
852
852
96.863
2801
3310
1
chr1A.!!$R1
509
2
TraesCS1A01G135900
chr1D
190479353
190481688
2335
True
3184
3184
91.299
18
2371
1
chr1D.!!$R1
2353
3
TraesCS1A01G135900
chr1B
263947114
263948818
1704
True
2331
2331
91.475
665
2371
1
chr1B.!!$R1
1706
4
TraesCS1A01G135900
chr1B
263979257
263979933
676
True
1090
1090
95.729
1
677
1
chr1B.!!$R2
676
5
TraesCS1A01G135900
chr7A
343242917
343243424
507
True
872
872
97.642
2802
3310
1
chr7A.!!$R1
508
6
TraesCS1A01G135900
chr7A
45331191
45331697
506
False
850
850
96.857
2802
3310
1
chr7A.!!$F1
508
7
TraesCS1A01G135900
chr7A
575231673
575232180
507
False
846
846
96.667
2801
3310
1
chr7A.!!$F3
509
8
TraesCS1A01G135900
chr6A
96315325
96315832
507
True
872
872
97.642
2802
3310
1
chr6A.!!$R1
508
9
TraesCS1A01G135900
chr6A
410037695
410038200
505
True
854
854
97.047
2803
3310
1
chr6A.!!$R2
507
10
TraesCS1A01G135900
chr6A
151445126
151445636
510
False
846
846
96.491
2798
3310
1
chr6A.!!$F1
512
11
TraesCS1A01G135900
chr5A
482442150
482442657
507
False
856
856
97.053
2802
3310
1
chr5A.!!$F2
508
12
TraesCS1A01G135900
chr2A
281423215
281423722
507
True
850
850
96.857
2800
3308
1
chr2A.!!$R1
508
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
969
994
0.104855
GTGTGGTGTGAGTGAGCTGA
59.895
55.0
0.0
0.0
0.0
4.26
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2441
2522
0.033011
CGAGGAAGGGAAGAGGAGGA
60.033
60.0
0.0
0.0
0.0
3.71
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
62
65
9.166173
TCATCAAACAGTCAAATTCTCGATAAT
57.834
29.630
0.00
0.00
0.00
1.28
121
124
4.161377
AGCTACTTCCTGAATTGAGTCTCC
59.839
45.833
0.00
0.00
0.00
3.71
155
158
2.560504
TGGTGCCATTAAGTAGCGATG
58.439
47.619
0.00
0.00
0.00
3.84
267
270
3.887352
TGCAATATACCGGCTAAAACCA
58.113
40.909
0.00
0.00
0.00
3.67
269
272
3.004002
GCAATATACCGGCTAAAACCACC
59.996
47.826
0.00
0.00
0.00
4.61
306
309
2.254951
CATTCAACAAGCGCGGCA
59.745
55.556
8.83
0.00
0.00
5.69
326
329
2.091924
ATAGAGGAGCGGGAGGGGA
61.092
63.158
0.00
0.00
0.00
4.81
403
406
3.665675
CTCGCAGTACCTGGTGGGC
62.666
68.421
10.23
9.21
39.10
5.36
454
457
1.481363
GTAGTGTGGAAGTAGGAGGGC
59.519
57.143
0.00
0.00
0.00
5.19
513
516
3.790437
CAGGGGGCAGACGAGCAT
61.790
66.667
0.00
0.00
35.83
3.79
729
741
4.640201
TCCATTCCAAGATTCCGCTAAAAG
59.360
41.667
0.00
0.00
0.00
2.27
801
813
4.555262
ACAAAATTGCATTAACCGAGGTG
58.445
39.130
0.00
0.00
0.00
4.00
805
817
1.377987
GCATTAACCGAGGTGGCCA
60.378
57.895
0.00
0.00
43.94
5.36
943
955
2.399511
ATCGATCGGACAGAGCAGCG
62.400
60.000
16.41
0.00
34.30
5.18
945
957
3.069980
GATCGGACAGAGCAGCGGT
62.070
63.158
0.00
0.00
34.89
5.68
949
961
2.202810
GACAGAGCAGCGGTAGGC
60.203
66.667
0.00
0.00
44.05
3.93
967
992
1.068083
CGTGTGGTGTGAGTGAGCT
59.932
57.895
0.00
0.00
0.00
4.09
968
993
1.217585
CGTGTGGTGTGAGTGAGCTG
61.218
60.000
0.00
0.00
0.00
4.24
969
994
0.104855
GTGTGGTGTGAGTGAGCTGA
59.895
55.000
0.00
0.00
0.00
4.26
970
995
1.051008
TGTGGTGTGAGTGAGCTGAT
58.949
50.000
0.00
0.00
0.00
2.90
971
996
1.001293
TGTGGTGTGAGTGAGCTGATC
59.999
52.381
0.00
0.00
0.00
2.92
972
997
1.001293
GTGGTGTGAGTGAGCTGATCA
59.999
52.381
0.00
0.00
34.79
2.92
973
998
1.274447
TGGTGTGAGTGAGCTGATCAG
59.726
52.381
18.84
18.84
39.07
2.90
974
999
1.547820
GGTGTGAGTGAGCTGATCAGA
59.452
52.381
27.04
2.29
39.07
3.27
1063
1088
2.305853
CGCCGCCTCATTCTCATCG
61.306
63.158
0.00
0.00
0.00
3.84
1064
1089
2.602322
GCCGCCTCATTCTCATCGC
61.602
63.158
0.00
0.00
0.00
4.58
1072
1097
0.656259
CATTCTCATCGCCACAGCAG
59.344
55.000
0.00
0.00
39.83
4.24
1319
1347
4.202020
CGACATCCTCGGTATGGGTATATG
60.202
50.000
0.00
0.00
38.87
1.78
1320
1348
3.451178
ACATCCTCGGTATGGGTATATGC
59.549
47.826
0.00
0.00
0.00
3.14
1321
1349
3.178412
TCCTCGGTATGGGTATATGCA
57.822
47.619
0.00
0.00
0.00
3.96
1322
1350
3.719871
TCCTCGGTATGGGTATATGCAT
58.280
45.455
3.79
3.79
0.00
3.96
1323
1351
3.450817
TCCTCGGTATGGGTATATGCATG
59.549
47.826
10.16
0.00
0.00
4.06
1324
1352
3.432186
CCTCGGTATGGGTATATGCATGG
60.432
52.174
10.16
0.00
0.00
3.66
1325
1353
2.093181
TCGGTATGGGTATATGCATGGC
60.093
50.000
10.16
0.00
0.00
4.40
1326
1354
2.355615
CGGTATGGGTATATGCATGGCA
60.356
50.000
10.16
0.00
44.86
4.92
1327
1355
3.282021
GGTATGGGTATATGCATGGCAG
58.718
50.000
10.16
0.00
43.65
4.85
1328
1356
2.519771
ATGGGTATATGCATGGCAGG
57.480
50.000
10.16
0.00
43.65
4.85
1329
1357
0.251297
TGGGTATATGCATGGCAGGC
60.251
55.000
18.55
18.55
43.65
4.85
1330
1358
0.251297
GGGTATATGCATGGCAGGCA
60.251
55.000
29.92
29.92
43.65
4.75
1331
1359
0.883833
GGTATATGCATGGCAGGCAC
59.116
55.000
30.38
16.28
45.23
5.01
1332
1360
1.546323
GGTATATGCATGGCAGGCACT
60.546
52.381
30.38
21.13
45.23
4.40
1333
1361
1.808945
GTATATGCATGGCAGGCACTC
59.191
52.381
30.38
15.31
45.23
3.51
1334
1362
0.538977
ATATGCATGGCAGGCACTCC
60.539
55.000
30.38
0.00
45.23
3.85
1335
1363
1.924145
TATGCATGGCAGGCACTCCA
61.924
55.000
30.38
12.03
45.23
3.86
1336
1364
2.441532
GCATGGCAGGCACTCCAT
60.442
61.111
20.53
0.22
43.54
3.41
1337
1365
2.056223
GCATGGCAGGCACTCCATT
61.056
57.895
20.53
0.00
41.83
3.16
1338
1366
1.813859
CATGGCAGGCACTCCATTG
59.186
57.895
0.00
0.00
41.83
2.82
1339
1367
0.681887
CATGGCAGGCACTCCATTGA
60.682
55.000
0.00
0.00
41.83
2.57
1340
1368
0.682209
ATGGCAGGCACTCCATTGAC
60.682
55.000
0.00
0.00
41.29
3.18
1341
1369
2.401766
GGCAGGCACTCCATTGACG
61.402
63.158
0.00
0.00
34.60
4.35
1342
1370
1.375908
GCAGGCACTCCATTGACGA
60.376
57.895
0.00
0.00
34.60
4.20
1343
1371
1.639298
GCAGGCACTCCATTGACGAC
61.639
60.000
0.00
0.00
34.60
4.34
1344
1372
0.036952
CAGGCACTCCATTGACGACT
60.037
55.000
0.00
0.00
34.60
4.18
1345
1373
0.247736
AGGCACTCCATTGACGACTC
59.752
55.000
0.00
0.00
33.74
3.36
1346
1374
0.247736
GGCACTCCATTGACGACTCT
59.752
55.000
0.00
0.00
0.00
3.24
1347
1375
1.634702
GCACTCCATTGACGACTCTC
58.365
55.000
0.00
0.00
0.00
3.20
1348
1376
1.203523
GCACTCCATTGACGACTCTCT
59.796
52.381
0.00
0.00
0.00
3.10
1349
1377
2.733858
GCACTCCATTGACGACTCTCTC
60.734
54.545
0.00
0.00
0.00
3.20
1350
1378
2.752354
CACTCCATTGACGACTCTCTCT
59.248
50.000
0.00
0.00
0.00
3.10
1351
1379
3.942115
CACTCCATTGACGACTCTCTCTA
59.058
47.826
0.00
0.00
0.00
2.43
1352
1380
4.035091
CACTCCATTGACGACTCTCTCTAG
59.965
50.000
0.00
0.00
0.00
2.43
1353
1381
2.946329
TCCATTGACGACTCTCTCTAGC
59.054
50.000
0.00
0.00
0.00
3.42
1354
1382
2.948979
CCATTGACGACTCTCTCTAGCT
59.051
50.000
0.00
0.00
0.00
3.32
1355
1383
4.130857
CCATTGACGACTCTCTCTAGCTA
58.869
47.826
0.00
0.00
0.00
3.32
1356
1384
4.024387
CCATTGACGACTCTCTCTAGCTAC
60.024
50.000
0.00
0.00
0.00
3.58
1357
1385
4.475051
TTGACGACTCTCTCTAGCTACT
57.525
45.455
0.00
0.00
0.00
2.57
1358
1386
4.049546
TGACGACTCTCTCTAGCTACTC
57.950
50.000
0.00
0.00
0.00
2.59
1365
1393
4.141574
ACTCTCTCTAGCTACTCGGTTCAT
60.142
45.833
0.00
0.00
0.00
2.57
1367
1395
3.880490
CTCTCTAGCTACTCGGTTCATGT
59.120
47.826
0.00
0.00
0.00
3.21
1529
1580
4.770362
TCGATCCCCTCACGGCCA
62.770
66.667
2.24
0.00
0.00
5.36
1547
1598
1.446792
AAGATCGTGGTGAGCGCTG
60.447
57.895
18.48
0.00
38.28
5.18
1548
1599
3.558411
GATCGTGGTGAGCGCTGC
61.558
66.667
18.48
7.45
0.00
5.25
1549
1600
3.997064
GATCGTGGTGAGCGCTGCT
62.997
63.158
18.48
2.68
43.88
4.24
1564
1645
1.005340
CTGCTCGCACTTCCAAGATC
58.995
55.000
0.00
0.00
0.00
2.75
1565
1646
0.737367
TGCTCGCACTTCCAAGATCG
60.737
55.000
0.00
0.00
0.00
3.69
1568
1649
1.656095
CTCGCACTTCCAAGATCGAAC
59.344
52.381
0.00
0.00
34.83
3.95
1570
1651
1.126846
CGCACTTCCAAGATCGAACAC
59.873
52.381
0.00
0.00
0.00
3.32
1571
1652
2.417719
GCACTTCCAAGATCGAACACT
58.582
47.619
0.00
0.00
0.00
3.55
1573
1654
2.663602
CACTTCCAAGATCGAACACTCG
59.336
50.000
0.00
0.00
46.87
4.18
1584
1665
2.951676
GAACACTCGACTTGAAAGCC
57.048
50.000
0.00
0.00
0.00
4.35
1585
1666
1.531578
GAACACTCGACTTGAAAGCCC
59.468
52.381
0.00
0.00
0.00
5.19
1586
1667
0.468226
ACACTCGACTTGAAAGCCCA
59.532
50.000
0.00
0.00
0.00
5.36
1587
1668
1.072331
ACACTCGACTTGAAAGCCCAT
59.928
47.619
0.00
0.00
0.00
4.00
1588
1669
2.154462
CACTCGACTTGAAAGCCCATT
58.846
47.619
0.00
0.00
0.00
3.16
1589
1670
3.244422
ACACTCGACTTGAAAGCCCATTA
60.244
43.478
0.00
0.00
0.00
1.90
1590
1671
3.372206
CACTCGACTTGAAAGCCCATTAG
59.628
47.826
0.00
0.00
0.00
1.73
1591
1672
3.008049
ACTCGACTTGAAAGCCCATTAGT
59.992
43.478
0.00
0.00
0.00
2.24
1592
1673
4.003648
CTCGACTTGAAAGCCCATTAGTT
58.996
43.478
0.00
0.00
0.00
2.24
1593
1674
3.751175
TCGACTTGAAAGCCCATTAGTTG
59.249
43.478
0.00
0.00
0.00
3.16
1594
1675
3.670627
CGACTTGAAAGCCCATTAGTTGC
60.671
47.826
0.00
0.00
0.00
4.17
1595
1676
2.562738
ACTTGAAAGCCCATTAGTTGCC
59.437
45.455
0.00
0.00
0.00
4.52
1596
1677
2.603075
TGAAAGCCCATTAGTTGCCT
57.397
45.000
0.00
0.00
0.00
4.75
1597
1678
2.888212
TGAAAGCCCATTAGTTGCCTT
58.112
42.857
0.00
0.00
0.00
4.35
1598
1679
2.562298
TGAAAGCCCATTAGTTGCCTTG
59.438
45.455
0.00
0.00
0.00
3.61
1599
1680
0.897621
AAGCCCATTAGTTGCCTTGC
59.102
50.000
0.00
0.00
0.00
4.01
1600
1681
0.040204
AGCCCATTAGTTGCCTTGCT
59.960
50.000
0.00
0.00
0.00
3.91
1601
1682
0.174162
GCCCATTAGTTGCCTTGCTG
59.826
55.000
0.00
0.00
0.00
4.41
1602
1683
1.838112
CCCATTAGTTGCCTTGCTGA
58.162
50.000
0.00
0.00
0.00
4.26
1603
1684
2.381911
CCCATTAGTTGCCTTGCTGAT
58.618
47.619
0.00
0.00
0.00
2.90
1604
1685
2.762327
CCCATTAGTTGCCTTGCTGATT
59.238
45.455
0.00
0.00
0.00
2.57
1605
1686
3.196254
CCCATTAGTTGCCTTGCTGATTT
59.804
43.478
0.00
0.00
0.00
2.17
1606
1687
4.402155
CCCATTAGTTGCCTTGCTGATTTA
59.598
41.667
0.00
0.00
0.00
1.40
1607
1688
5.343249
CCATTAGTTGCCTTGCTGATTTAC
58.657
41.667
0.00
0.00
0.00
2.01
1608
1689
5.105797
CCATTAGTTGCCTTGCTGATTTACA
60.106
40.000
0.00
0.00
0.00
2.41
1609
1690
6.406177
CCATTAGTTGCCTTGCTGATTTACAT
60.406
38.462
0.00
0.00
0.00
2.29
1610
1691
6.588719
TTAGTTGCCTTGCTGATTTACATT
57.411
33.333
0.00
0.00
0.00
2.71
1611
1692
4.813027
AGTTGCCTTGCTGATTTACATTG
58.187
39.130
0.00
0.00
0.00
2.82
1612
1693
3.235157
TGCCTTGCTGATTTACATTGC
57.765
42.857
0.00
0.00
0.00
3.56
1613
1694
2.094078
TGCCTTGCTGATTTACATTGCC
60.094
45.455
0.00
0.00
0.00
4.52
1614
1695
2.094078
GCCTTGCTGATTTACATTGCCA
60.094
45.455
0.00
0.00
0.00
4.92
1683
1764
3.975168
TCAAGGAGTACAAGGGTAAGC
57.025
47.619
0.00
0.00
0.00
3.09
1824
1905
0.945813
CGACCTCGAGTCCTACATCC
59.054
60.000
12.31
0.00
43.08
3.51
2246
2327
2.472029
CTCTTCTGGGACACCTACCAT
58.528
52.381
0.00
0.00
35.93
3.55
2314
2395
1.754803
CTACGGCCTGTGGTAGATTCA
59.245
52.381
9.29
0.00
38.69
2.57
2317
2398
0.811616
GGCCTGTGGTAGATTCAGCG
60.812
60.000
0.00
0.00
0.00
5.18
2371
2452
8.780846
TGTATGTATGGACAAGTACGAATTTT
57.219
30.769
0.00
0.00
39.59
1.82
2372
2453
9.221933
TGTATGTATGGACAAGTACGAATTTTT
57.778
29.630
0.00
0.00
39.59
1.94
2373
2454
9.485591
GTATGTATGGACAAGTACGAATTTTTG
57.514
33.333
0.00
0.00
39.59
2.44
2374
2455
7.731882
TGTATGGACAAGTACGAATTTTTGA
57.268
32.000
0.00
0.00
30.68
2.69
2375
2456
8.330466
TGTATGGACAAGTACGAATTTTTGAT
57.670
30.769
0.00
0.00
30.68
2.57
2376
2457
9.438228
TGTATGGACAAGTACGAATTTTTGATA
57.562
29.630
0.00
0.00
30.68
2.15
2377
2458
9.916397
GTATGGACAAGTACGAATTTTTGATAG
57.084
33.333
0.00
0.00
0.00
2.08
2378
2459
6.837992
TGGACAAGTACGAATTTTTGATAGC
58.162
36.000
0.00
0.00
0.00
2.97
2379
2460
6.128117
TGGACAAGTACGAATTTTTGATAGCC
60.128
38.462
0.00
0.00
0.00
3.93
2380
2461
5.864986
ACAAGTACGAATTTTTGATAGCCG
58.135
37.500
0.00
0.00
0.00
5.52
2381
2462
4.531659
AGTACGAATTTTTGATAGCCGC
57.468
40.909
0.00
0.00
0.00
6.53
2382
2463
2.844122
ACGAATTTTTGATAGCCGCC
57.156
45.000
0.00
0.00
0.00
6.13
2383
2464
1.404035
ACGAATTTTTGATAGCCGCCC
59.596
47.619
0.00
0.00
0.00
6.13
2384
2465
1.269051
CGAATTTTTGATAGCCGCCCC
60.269
52.381
0.00
0.00
0.00
5.80
2385
2466
2.031870
GAATTTTTGATAGCCGCCCCT
58.968
47.619
0.00
0.00
0.00
4.79
2386
2467
1.692411
ATTTTTGATAGCCGCCCCTC
58.308
50.000
0.00
0.00
0.00
4.30
2387
2468
0.395173
TTTTTGATAGCCGCCCCTCC
60.395
55.000
0.00
0.00
0.00
4.30
2388
2469
1.279025
TTTTGATAGCCGCCCCTCCT
61.279
55.000
0.00
0.00
0.00
3.69
2389
2470
1.696097
TTTGATAGCCGCCCCTCCTC
61.696
60.000
0.00
0.00
0.00
3.71
2390
2471
3.315140
GATAGCCGCCCCTCCTCC
61.315
72.222
0.00
0.00
0.00
4.30
2391
2472
3.837213
GATAGCCGCCCCTCCTCCT
62.837
68.421
0.00
0.00
0.00
3.69
2392
2473
3.837213
ATAGCCGCCCCTCCTCCTC
62.837
68.421
0.00
0.00
0.00
3.71
2397
2478
4.890306
GCCCCTCCTCCTCCTCCC
62.890
77.778
0.00
0.00
0.00
4.30
2398
2479
3.039526
CCCCTCCTCCTCCTCCCT
61.040
72.222
0.00
0.00
0.00
4.20
2399
2480
2.612251
CCCTCCTCCTCCTCCCTC
59.388
72.222
0.00
0.00
0.00
4.30
2400
2481
2.612251
CCTCCTCCTCCTCCCTCC
59.388
72.222
0.00
0.00
0.00
4.30
2401
2482
2.612251
CTCCTCCTCCTCCCTCCC
59.388
72.222
0.00
0.00
0.00
4.30
2402
2483
2.204624
TCCTCCTCCTCCCTCCCA
60.205
66.667
0.00
0.00
0.00
4.37
2403
2484
2.041405
CCTCCTCCTCCCTCCCAC
60.041
72.222
0.00
0.00
0.00
4.61
2404
2485
2.041405
CTCCTCCTCCCTCCCACC
60.041
72.222
0.00
0.00
0.00
4.61
2405
2486
3.695825
TCCTCCTCCCTCCCACCC
61.696
72.222
0.00
0.00
0.00
4.61
2406
2487
4.825679
CCTCCTCCCTCCCACCCC
62.826
77.778
0.00
0.00
0.00
4.95
2407
2488
3.700350
CTCCTCCCTCCCACCCCT
61.700
72.222
0.00
0.00
0.00
4.79
2408
2489
2.204721
TCCTCCCTCCCACCCCTA
60.205
66.667
0.00
0.00
0.00
3.53
2409
2490
2.287251
CCTCCCTCCCACCCCTAG
59.713
72.222
0.00
0.00
0.00
3.02
2410
2491
2.333462
CCTCCCTCCCACCCCTAGA
61.333
68.421
0.00
0.00
0.00
2.43
2411
2492
1.075151
CTCCCTCCCACCCCTAGAC
60.075
68.421
0.00
0.00
0.00
2.59
2412
2493
1.865045
TCCCTCCCACCCCTAGACA
60.865
63.158
0.00
0.00
0.00
3.41
2413
2494
1.689582
CCCTCCCACCCCTAGACAC
60.690
68.421
0.00
0.00
0.00
3.67
2414
2495
1.689582
CCTCCCACCCCTAGACACC
60.690
68.421
0.00
0.00
0.00
4.16
2415
2496
1.689582
CTCCCACCCCTAGACACCC
60.690
68.421
0.00
0.00
0.00
4.61
2416
2497
2.691252
CCCACCCCTAGACACCCC
60.691
72.222
0.00
0.00
0.00
4.95
2417
2498
2.454941
CCACCCCTAGACACCCCT
59.545
66.667
0.00
0.00
0.00
4.79
2418
2499
1.689582
CCACCCCTAGACACCCCTC
60.690
68.421
0.00
0.00
0.00
4.30
2419
2500
1.689582
CACCCCTAGACACCCCTCC
60.690
68.421
0.00
0.00
0.00
4.30
2420
2501
2.040779
CCCCTAGACACCCCTCCC
60.041
72.222
0.00
0.00
0.00
4.30
2421
2502
2.647949
CCCCTAGACACCCCTCCCT
61.648
68.421
0.00
0.00
0.00
4.20
2422
2503
1.075151
CCCTAGACACCCCTCCCTC
60.075
68.421
0.00
0.00
0.00
4.30
2423
2504
1.075151
CCTAGACACCCCTCCCTCC
60.075
68.421
0.00
0.00
0.00
4.30
2424
2505
1.595058
CCTAGACACCCCTCCCTCCT
61.595
65.000
0.00
0.00
0.00
3.69
2425
2506
0.105913
CTAGACACCCCTCCCTCCTC
60.106
65.000
0.00
0.00
0.00
3.71
2426
2507
1.591280
TAGACACCCCTCCCTCCTCC
61.591
65.000
0.00
0.00
0.00
4.30
2427
2508
2.876858
ACACCCCTCCCTCCTCCT
60.877
66.667
0.00
0.00
0.00
3.69
2428
2509
2.041405
CACCCCTCCCTCCTCCTC
60.041
72.222
0.00
0.00
0.00
3.71
2429
2510
3.369388
ACCCCTCCCTCCTCCTCC
61.369
72.222
0.00
0.00
0.00
4.30
2430
2511
4.179599
CCCCTCCCTCCTCCTCCC
62.180
77.778
0.00
0.00
0.00
4.30
2431
2512
3.039526
CCCTCCCTCCTCCTCCCT
61.040
72.222
0.00
0.00
0.00
4.20
2432
2513
1.705450
CCCTCCCTCCTCCTCCCTA
60.705
68.421
0.00
0.00
0.00
3.53
2433
2514
1.735455
CCCTCCCTCCTCCTCCCTAG
61.735
70.000
0.00
0.00
0.00
3.02
2434
2515
1.155155
CTCCCTCCTCCTCCCTAGC
59.845
68.421
0.00
0.00
0.00
3.42
2435
2516
2.202899
CCCTCCTCCTCCCTAGCC
59.797
72.222
0.00
0.00
0.00
3.93
2436
2517
2.203567
CCTCCTCCTCCCTAGCCG
60.204
72.222
0.00
0.00
0.00
5.52
2437
2518
2.915137
CTCCTCCTCCCTAGCCGC
60.915
72.222
0.00
0.00
0.00
6.53
2438
2519
4.541648
TCCTCCTCCCTAGCCGCC
62.542
72.222
0.00
0.00
0.00
6.13
2447
2528
4.548513
CTAGCCGCCCCTCCTCCT
62.549
72.222
0.00
0.00
0.00
3.69
2448
2529
4.541648
TAGCCGCCCCTCCTCCTC
62.542
72.222
0.00
0.00
0.00
3.71
2451
2532
3.157949
CCGCCCCTCCTCCTCTTC
61.158
72.222
0.00
0.00
0.00
2.87
2452
2533
3.157949
CGCCCCTCCTCCTCTTCC
61.158
72.222
0.00
0.00
0.00
3.46
2453
2534
2.770475
GCCCCTCCTCCTCTTCCC
60.770
72.222
0.00
0.00
0.00
3.97
2454
2535
3.124088
CCCCTCCTCCTCTTCCCT
58.876
66.667
0.00
0.00
0.00
4.20
2455
2536
1.398234
CCCCTCCTCCTCTTCCCTT
59.602
63.158
0.00
0.00
0.00
3.95
2456
2537
0.692756
CCCCTCCTCCTCTTCCCTTC
60.693
65.000
0.00
0.00
0.00
3.46
2457
2538
0.692756
CCCTCCTCCTCTTCCCTTCC
60.693
65.000
0.00
0.00
0.00
3.46
2458
2539
0.341609
CCTCCTCCTCTTCCCTTCCT
59.658
60.000
0.00
0.00
0.00
3.36
2459
2540
1.691163
CCTCCTCCTCTTCCCTTCCTC
60.691
61.905
0.00
0.00
0.00
3.71
2460
2541
0.033011
TCCTCCTCTTCCCTTCCTCG
60.033
60.000
0.00
0.00
0.00
4.63
2461
2542
1.681486
CCTCCTCTTCCCTTCCTCGC
61.681
65.000
0.00
0.00
0.00
5.03
2462
2543
1.681486
CTCCTCTTCCCTTCCTCGCC
61.681
65.000
0.00
0.00
0.00
5.54
2463
2544
2.496817
CTCTTCCCTTCCTCGCCG
59.503
66.667
0.00
0.00
0.00
6.46
2464
2545
3.724914
CTCTTCCCTTCCTCGCCGC
62.725
68.421
0.00
0.00
0.00
6.53
2465
2546
4.840005
CTTCCCTTCCTCGCCGCC
62.840
72.222
0.00
0.00
0.00
6.13
2536
2617
4.785453
CCTCGGTTGCCCTGCCTC
62.785
72.222
0.00
0.00
0.00
4.70
2537
2618
3.710722
CTCGGTTGCCCTGCCTCT
61.711
66.667
0.00
0.00
0.00
3.69
2538
2619
3.965539
CTCGGTTGCCCTGCCTCTG
62.966
68.421
0.00
0.00
0.00
3.35
2547
2628
4.020617
CTGCCTCTGCGTGGGGAA
62.021
66.667
0.00
0.00
41.78
3.97
2548
2629
4.329545
TGCCTCTGCGTGGGGAAC
62.330
66.667
0.00
0.00
41.78
3.62
2549
2630
4.021925
GCCTCTGCGTGGGGAACT
62.022
66.667
0.00
0.00
0.00
3.01
2550
2631
2.266055
CCTCTGCGTGGGGAACTC
59.734
66.667
0.00
0.00
0.00
3.01
2551
2632
2.266055
CTCTGCGTGGGGAACTCC
59.734
66.667
0.00
0.00
0.00
3.85
2552
2633
3.649277
CTCTGCGTGGGGAACTCCG
62.649
68.421
0.00
0.00
36.71
4.63
2553
2634
4.760047
CTGCGTGGGGAACTCCGG
62.760
72.222
0.00
0.00
36.71
5.14
2555
2636
3.782443
GCGTGGGGAACTCCGGAT
61.782
66.667
3.57
0.00
36.71
4.18
2556
2637
2.499685
CGTGGGGAACTCCGGATC
59.500
66.667
3.57
0.00
36.71
3.36
2557
2638
2.058595
CGTGGGGAACTCCGGATCT
61.059
63.158
3.57
0.00
36.71
2.75
2558
2639
1.522569
GTGGGGAACTCCGGATCTG
59.477
63.158
3.57
0.00
36.71
2.90
2559
2640
1.689233
TGGGGAACTCCGGATCTGG
60.689
63.158
15.09
15.09
36.71
3.86
2560
2641
1.382695
GGGGAACTCCGGATCTGGA
60.383
63.158
22.28
22.28
36.71
3.86
2580
2661
3.830192
GGCGGCTCCATTGGCAAG
61.830
66.667
5.96
0.00
34.01
4.01
2581
2662
3.830192
GCGGCTCCATTGGCAAGG
61.830
66.667
5.96
5.28
0.00
3.61
2582
2663
3.830192
CGGCTCCATTGGCAAGGC
61.830
66.667
6.33
3.22
0.00
4.35
2583
2664
2.681064
GGCTCCATTGGCAAGGCA
60.681
61.111
6.33
0.00
35.78
4.75
2584
2665
2.575461
GCTCCATTGGCAAGGCAC
59.425
61.111
6.33
0.00
0.00
5.01
2585
2666
2.879907
CTCCATTGGCAAGGCACG
59.120
61.111
6.33
0.00
0.00
5.34
2586
2667
2.676121
TCCATTGGCAAGGCACGG
60.676
61.111
6.33
0.28
0.00
4.94
2587
2668
4.440127
CCATTGGCAAGGCACGGC
62.440
66.667
6.33
0.00
0.00
5.68
2616
2697
4.082523
CGTGCGGGTGGTGGATCT
62.083
66.667
0.00
0.00
0.00
2.75
2617
2698
2.436646
GTGCGGGTGGTGGATCTG
60.437
66.667
0.00
0.00
0.00
2.90
2618
2699
3.716195
TGCGGGTGGTGGATCTGG
61.716
66.667
0.00
0.00
0.00
3.86
2620
2701
4.838152
CGGGTGGTGGATCTGGCG
62.838
72.222
0.00
0.00
0.00
5.69
2621
2702
3.717294
GGGTGGTGGATCTGGCGT
61.717
66.667
0.00
0.00
0.00
5.68
2622
2703
2.125106
GGTGGTGGATCTGGCGTC
60.125
66.667
0.00
0.00
0.00
5.19
2623
2704
2.125106
GTGGTGGATCTGGCGTCC
60.125
66.667
0.00
0.00
36.26
4.79
2624
2705
3.399181
TGGTGGATCTGGCGTCCC
61.399
66.667
0.00
0.00
34.76
4.46
2625
2706
4.530857
GGTGGATCTGGCGTCCCG
62.531
72.222
0.00
0.00
34.76
5.14
2626
2707
4.530857
GTGGATCTGGCGTCCCGG
62.531
72.222
0.00
0.00
38.98
5.73
2656
2737
2.908015
CGGGATCCGGTGGTCATT
59.092
61.111
11.10
0.00
44.15
2.57
2657
2738
1.523711
CGGGATCCGGTGGTCATTG
60.524
63.158
11.10
0.00
44.15
2.82
2658
2739
1.152963
GGGATCCGGTGGTCATTGG
60.153
63.158
5.45
0.00
0.00
3.16
2659
2740
1.823899
GGATCCGGTGGTCATTGGC
60.824
63.158
0.00
0.00
0.00
4.52
2660
2741
2.124736
ATCCGGTGGTCATTGGCG
60.125
61.111
0.00
0.00
0.00
5.69
2661
2742
3.697439
ATCCGGTGGTCATTGGCGG
62.697
63.158
0.00
0.00
0.00
6.13
2662
2743
4.715523
CCGGTGGTCATTGGCGGT
62.716
66.667
0.00
0.00
0.00
5.68
2663
2744
3.124921
CGGTGGTCATTGGCGGTC
61.125
66.667
0.00
0.00
0.00
4.79
2664
2745
2.033448
GGTGGTCATTGGCGGTCA
59.967
61.111
0.00
0.00
0.00
4.02
2665
2746
2.040544
GGTGGTCATTGGCGGTCAG
61.041
63.158
0.00
0.00
0.00
3.51
2675
2756
3.723348
GCGGTCAGCGGTGGTTTC
61.723
66.667
15.67
3.38
35.41
2.78
2676
2757
2.030562
CGGTCAGCGGTGGTTTCT
59.969
61.111
15.67
0.00
0.00
2.52
2677
2758
2.317609
CGGTCAGCGGTGGTTTCTG
61.318
63.158
15.67
4.82
0.00
3.02
2678
2759
2.617274
GGTCAGCGGTGGTTTCTGC
61.617
63.158
15.67
0.00
39.72
4.26
2679
2760
2.664851
TCAGCGGTGGTTTCTGCG
60.665
61.111
15.67
0.00
43.62
5.18
2680
2761
2.664851
CAGCGGTGGTTTCTGCGA
60.665
61.111
6.74
0.00
43.62
5.10
2681
2762
2.034879
CAGCGGTGGTTTCTGCGAT
61.035
57.895
6.74
0.00
43.62
4.58
2682
2763
2.034879
AGCGGTGGTTTCTGCGATG
61.035
57.895
0.00
0.00
43.62
3.84
2683
2764
3.039202
GCGGTGGTTTCTGCGATGG
62.039
63.158
0.00
0.00
0.00
3.51
2684
2765
2.877691
GGTGGTTTCTGCGATGGC
59.122
61.111
0.00
0.00
40.52
4.40
2685
2766
2.700773
GGTGGTTTCTGCGATGGCC
61.701
63.158
0.00
0.00
38.85
5.36
2686
2767
2.745884
TGGTTTCTGCGATGGCCG
60.746
61.111
0.00
0.00
38.85
6.13
2687
2768
3.508840
GGTTTCTGCGATGGCCGG
61.509
66.667
0.00
0.00
38.85
6.13
2688
2769
2.746277
GTTTCTGCGATGGCCGGT
60.746
61.111
1.90
0.00
38.85
5.28
2689
2770
2.745884
TTTCTGCGATGGCCGGTG
60.746
61.111
1.90
0.00
38.85
4.94
2703
2784
3.490759
GGTGCACGCGATCTGGTG
61.491
66.667
15.93
0.00
37.22
4.17
2707
2788
2.887568
CACGCGATCTGGTGCCTC
60.888
66.667
15.93
0.00
0.00
4.70
2708
2789
4.148825
ACGCGATCTGGTGCCTCC
62.149
66.667
15.93
0.00
0.00
4.30
2709
2790
4.899239
CGCGATCTGGTGCCTCCC
62.899
72.222
0.00
0.00
34.77
4.30
2710
2791
4.554036
GCGATCTGGTGCCTCCCC
62.554
72.222
0.00
0.00
34.77
4.81
2711
2792
2.765807
CGATCTGGTGCCTCCCCT
60.766
66.667
0.00
0.00
34.77
4.79
2712
2793
2.801631
CGATCTGGTGCCTCCCCTC
61.802
68.421
0.00
0.00
34.77
4.30
2713
2794
2.367512
ATCTGGTGCCTCCCCTCC
60.368
66.667
0.00
0.00
34.77
4.30
2714
2795
2.905676
GATCTGGTGCCTCCCCTCCT
62.906
65.000
0.00
0.00
34.77
3.69
2715
2796
2.905676
ATCTGGTGCCTCCCCTCCTC
62.906
65.000
0.00
0.00
34.77
3.71
2716
2797
4.741239
TGGTGCCTCCCCTCCTCC
62.741
72.222
0.00
0.00
34.77
4.30
2721
2802
3.700350
CCTCCCCTCCTCCCCTGT
61.700
72.222
0.00
0.00
0.00
4.00
2722
2803
2.456840
CTCCCCTCCTCCCCTGTT
59.543
66.667
0.00
0.00
0.00
3.16
2723
2804
1.229984
CTCCCCTCCTCCCCTGTTT
60.230
63.158
0.00
0.00
0.00
2.83
2724
2805
1.541368
TCCCCTCCTCCCCTGTTTG
60.541
63.158
0.00
0.00
0.00
2.93
2725
2806
2.616458
CCCCTCCTCCCCTGTTTGG
61.616
68.421
0.00
0.00
0.00
3.28
2726
2807
2.356667
CCTCCTCCCCTGTTTGGC
59.643
66.667
0.00
0.00
0.00
4.52
2727
2808
2.045926
CTCCTCCCCTGTTTGGCG
60.046
66.667
0.00
0.00
0.00
5.69
2728
2809
2.852075
TCCTCCCCTGTTTGGCGT
60.852
61.111
0.00
0.00
0.00
5.68
2729
2810
2.672996
CCTCCCCTGTTTGGCGTG
60.673
66.667
0.00
0.00
0.00
5.34
2730
2811
3.365265
CTCCCCTGTTTGGCGTGC
61.365
66.667
0.00
0.00
0.00
5.34
2731
2812
4.196778
TCCCCTGTTTGGCGTGCA
62.197
61.111
0.00
0.00
0.00
4.57
2732
2813
3.673484
CCCCTGTTTGGCGTGCAG
61.673
66.667
0.00
0.00
0.00
4.41
2733
2814
3.673484
CCCTGTTTGGCGTGCAGG
61.673
66.667
12.28
12.28
46.83
4.85
2734
2815
2.906897
CCTGTTTGGCGTGCAGGT
60.907
61.111
8.40
0.00
43.42
4.00
2735
2816
2.639286
CTGTTTGGCGTGCAGGTC
59.361
61.111
3.56
3.56
0.00
3.85
2736
2817
2.124529
TGTTTGGCGTGCAGGTCA
60.125
55.556
10.09
10.09
0.00
4.02
2737
2818
1.518056
CTGTTTGGCGTGCAGGTCAT
61.518
55.000
15.28
0.00
0.00
3.06
2738
2819
1.210155
GTTTGGCGTGCAGGTCATC
59.790
57.895
15.28
7.65
0.00
2.92
2739
2820
1.971167
TTTGGCGTGCAGGTCATCC
60.971
57.895
15.28
4.18
0.00
3.51
2740
2821
2.410322
TTTGGCGTGCAGGTCATCCT
62.410
55.000
15.28
0.00
46.37
3.24
2741
2822
2.512515
GGCGTGCAGGTCATCCTC
60.513
66.667
6.05
0.00
43.07
3.71
2742
2823
2.887568
GCGTGCAGGTCATCCTCG
60.888
66.667
8.40
0.00
43.07
4.63
2743
2824
2.573869
CGTGCAGGTCATCCTCGT
59.426
61.111
0.00
0.00
43.07
4.18
2744
2825
1.517257
CGTGCAGGTCATCCTCGTC
60.517
63.158
0.00
0.00
43.07
4.20
2745
2826
1.517257
GTGCAGGTCATCCTCGTCG
60.517
63.158
0.00
0.00
43.07
5.12
2746
2827
2.105128
GCAGGTCATCCTCGTCGG
59.895
66.667
0.00
0.00
43.07
4.79
2748
2829
1.433879
CAGGTCATCCTCGTCGGAC
59.566
63.158
0.00
0.00
46.80
4.79
2749
2830
1.753463
AGGTCATCCTCGTCGGACC
60.753
63.158
8.96
8.96
46.80
4.46
2750
2831
2.408022
GTCATCCTCGTCGGACCG
59.592
66.667
7.84
7.84
46.80
4.79
2751
2832
3.515286
TCATCCTCGTCGGACCGC
61.515
66.667
9.66
3.45
46.80
5.68
2752
2833
4.907034
CATCCTCGTCGGACCGCG
62.907
72.222
20.03
20.03
46.80
6.46
2759
2840
3.818787
GTCGGACCGCGCTTCCTA
61.819
66.667
19.40
8.78
0.00
2.94
2760
2841
3.515286
TCGGACCGCGCTTCCTAG
61.515
66.667
19.40
8.02
0.00
3.02
2761
2842
4.570663
CGGACCGCGCTTCCTAGG
62.571
72.222
19.40
0.82
0.00
3.02
2762
2843
4.222847
GGACCGCGCTTCCTAGGG
62.223
72.222
15.76
5.74
37.39
3.53
2763
2844
3.459063
GACCGCGCTTCCTAGGGT
61.459
66.667
9.46
2.55
36.73
4.34
2764
2845
3.427598
GACCGCGCTTCCTAGGGTC
62.428
68.421
9.46
11.72
40.24
4.46
2765
2846
4.570663
CCGCGCTTCCTAGGGTCG
62.571
72.222
9.46
11.03
36.73
4.79
2767
2848
4.893601
GCGCTTCCTAGGGTCGCC
62.894
72.222
23.38
11.71
39.91
5.54
2768
2849
4.570663
CGCTTCCTAGGGTCGCCG
62.571
72.222
9.46
1.53
0.00
6.46
2769
2850
4.222847
GCTTCCTAGGGTCGCCGG
62.223
72.222
9.46
0.00
0.00
6.13
2770
2851
2.758737
CTTCCTAGGGTCGCCGGT
60.759
66.667
9.46
0.00
0.00
5.28
2771
2852
2.284112
TTCCTAGGGTCGCCGGTT
60.284
61.111
9.46
0.00
0.00
4.44
2772
2853
2.294132
CTTCCTAGGGTCGCCGGTTC
62.294
65.000
9.46
0.00
0.00
3.62
2773
2854
2.758737
CCTAGGGTCGCCGGTTCT
60.759
66.667
1.90
0.00
0.00
3.01
2774
2855
2.494918
CTAGGGTCGCCGGTTCTG
59.505
66.667
1.90
0.00
0.00
3.02
2775
2856
2.283388
TAGGGTCGCCGGTTCTGT
60.283
61.111
1.90
0.00
0.00
3.41
2776
2857
1.001020
TAGGGTCGCCGGTTCTGTA
60.001
57.895
1.90
0.00
0.00
2.74
2777
2858
1.315257
TAGGGTCGCCGGTTCTGTAC
61.315
60.000
1.90
0.00
0.00
2.90
2778
2859
2.652530
GGTCGCCGGTTCTGTACA
59.347
61.111
1.90
0.00
0.00
2.90
2779
2860
1.445582
GGTCGCCGGTTCTGTACAG
60.446
63.158
17.17
17.17
0.00
2.74
2780
2861
1.445582
GTCGCCGGTTCTGTACAGG
60.446
63.158
22.48
8.35
44.10
4.00
2781
2862
1.604308
TCGCCGGTTCTGTACAGGA
60.604
57.895
22.48
11.97
44.02
3.86
2782
2863
1.153823
CGCCGGTTCTGTACAGGAG
60.154
63.158
22.48
11.05
44.02
3.69
2783
2864
1.218316
GCCGGTTCTGTACAGGAGG
59.782
63.158
22.48
19.11
44.02
4.30
2784
2865
1.218316
CCGGTTCTGTACAGGAGGC
59.782
63.158
22.48
10.03
44.02
4.70
2785
2866
1.153823
CGGTTCTGTACAGGAGGCG
60.154
63.158
22.48
0.00
0.00
5.52
2786
2867
1.448013
GGTTCTGTACAGGAGGCGC
60.448
63.158
22.48
0.00
0.00
6.53
2787
2868
1.592223
GTTCTGTACAGGAGGCGCT
59.408
57.895
22.48
0.00
0.00
5.92
2788
2869
0.737715
GTTCTGTACAGGAGGCGCTG
60.738
60.000
22.48
0.00
0.00
5.18
2789
2870
2.507110
TTCTGTACAGGAGGCGCTGC
62.507
60.000
22.48
0.00
0.00
5.25
2790
2871
2.997315
TGTACAGGAGGCGCTGCT
60.997
61.111
7.64
0.48
30.68
4.24
2878
2959
1.843462
TTTTCCGGGAGCCCATTCGA
61.843
55.000
0.00
0.00
35.37
3.71
2955
3036
3.327404
GGGAAGTTGCTCCCGGGA
61.327
66.667
25.06
25.06
45.81
5.14
3001
3082
6.475727
GTGCGCAGAAAAGACTAGTATTGATA
59.524
38.462
12.22
0.00
0.00
2.15
3260
3341
0.252558
GGTTCCTCTGAGTGGGGGTA
60.253
60.000
3.66
0.00
0.00
3.69
3292
3373
4.852118
AGCCTGGCTTATTAGGGATGATAA
59.148
41.667
17.22
0.00
33.89
1.75
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
8.464770
TTTGACTGTTTGATGAAGTTTTTGAG
57.535
30.769
0.00
0.00
0.00
3.02
29
30
9.657419
AGAATTTGACTGTTTGATGAAGTTTTT
57.343
25.926
0.00
0.00
0.00
1.94
121
124
0.179156
GCACCATGAAATCCGCAGTG
60.179
55.000
0.00
0.00
0.00
3.66
155
158
1.996070
AAGGGGGCCGATTTCCTAGC
61.996
60.000
0.00
0.00
0.00
3.42
248
251
4.200874
TGGTGGTTTTAGCCGGTATATTG
58.799
43.478
1.90
0.00
0.00
1.90
250
253
3.712733
TCTGGTGGTTTTAGCCGGTATAT
59.287
43.478
1.90
0.00
0.00
0.86
251
254
3.106054
TCTGGTGGTTTTAGCCGGTATA
58.894
45.455
1.90
0.00
0.00
1.47
255
258
0.676782
CCTCTGGTGGTTTTAGCCGG
60.677
60.000
0.00
0.00
0.00
6.13
282
285
1.010419
CGCTTGTTGAATGCTTGGGC
61.010
55.000
0.00
0.00
39.26
5.36
306
309
1.152440
CCCTCCCGCTCCTCTATGT
60.152
63.158
0.00
0.00
0.00
2.29
403
406
5.871524
TGATTGATCTCGTCTCTTTCCTTTG
59.128
40.000
0.00
0.00
0.00
2.77
642
646
1.079543
CTGGGTTGTCTGAGCCGAG
60.080
63.158
0.00
0.00
40.06
4.63
729
741
2.410262
CGTGTGAGCATTGTCTTCGTTC
60.410
50.000
0.00
0.00
0.00
3.95
766
778
4.201666
TGCAATTTTGTTGTTTCGTCAAGC
60.202
37.500
0.00
0.00
0.00
4.01
785
797
0.963355
GGCCACCTCGGTTAATGCAA
60.963
55.000
0.00
0.00
36.97
4.08
801
813
3.802866
TCCAAATTCACAAGTTTTGGCC
58.197
40.909
0.00
0.00
45.79
5.36
805
817
6.773976
TGAGACTCCAAATTCACAAGTTTT
57.226
33.333
0.00
0.00
0.00
2.43
878
890
8.722394
CGCATTGTAGTTATAGATAGAGAGACA
58.278
37.037
0.00
0.00
0.00
3.41
943
955
1.374252
CTCACACCACACGCCTACC
60.374
63.158
0.00
0.00
0.00
3.18
945
957
1.110518
TCACTCACACCACACGCCTA
61.111
55.000
0.00
0.00
0.00
3.93
949
961
1.068083
AGCTCACTCACACCACACG
59.932
57.895
0.00
0.00
0.00
4.49
951
963
1.001293
GATCAGCTCACTCACACCACA
59.999
52.381
0.00
0.00
0.00
4.17
967
992
2.568509
TGTTGGTGCTGATCTCTGATCA
59.431
45.455
9.50
9.50
0.00
2.92
968
993
2.935201
GTGTTGGTGCTGATCTCTGATC
59.065
50.000
0.00
0.98
0.00
2.92
969
994
2.355513
GGTGTTGGTGCTGATCTCTGAT
60.356
50.000
0.00
0.00
0.00
2.90
970
995
1.002430
GGTGTTGGTGCTGATCTCTGA
59.998
52.381
0.00
0.00
0.00
3.27
971
996
1.446907
GGTGTTGGTGCTGATCTCTG
58.553
55.000
0.00
0.00
0.00
3.35
972
997
0.036952
CGGTGTTGGTGCTGATCTCT
60.037
55.000
0.00
0.00
0.00
3.10
973
998
1.021390
CCGGTGTTGGTGCTGATCTC
61.021
60.000
0.00
0.00
0.00
2.75
974
999
1.003355
CCGGTGTTGGTGCTGATCT
60.003
57.895
0.00
0.00
0.00
2.75
1319
1347
2.056223
AATGGAGTGCCTGCCATGC
61.056
57.895
0.00
0.00
43.85
4.06
1320
1348
0.681887
TCAATGGAGTGCCTGCCATG
60.682
55.000
0.00
0.00
43.85
3.66
1321
1349
0.682209
GTCAATGGAGTGCCTGCCAT
60.682
55.000
0.00
0.00
46.49
4.40
1322
1350
1.303561
GTCAATGGAGTGCCTGCCA
60.304
57.895
0.00
0.00
38.78
4.92
1323
1351
2.401766
CGTCAATGGAGTGCCTGCC
61.402
63.158
0.00
0.00
34.31
4.85
1324
1352
1.375908
TCGTCAATGGAGTGCCTGC
60.376
57.895
0.00
0.00
34.31
4.85
1325
1353
0.036952
AGTCGTCAATGGAGTGCCTG
60.037
55.000
0.00
0.00
34.31
4.85
1326
1354
0.247736
GAGTCGTCAATGGAGTGCCT
59.752
55.000
0.00
0.00
34.31
4.75
1327
1355
0.247736
AGAGTCGTCAATGGAGTGCC
59.752
55.000
0.00
0.00
0.00
5.01
1328
1356
1.203523
AGAGAGTCGTCAATGGAGTGC
59.796
52.381
0.00
0.00
0.00
4.40
1329
1357
2.752354
AGAGAGAGTCGTCAATGGAGTG
59.248
50.000
0.00
0.00
0.00
3.51
1330
1358
3.080300
AGAGAGAGTCGTCAATGGAGT
57.920
47.619
0.00
0.00
0.00
3.85
1331
1359
3.003275
GCTAGAGAGAGTCGTCAATGGAG
59.997
52.174
0.00
0.00
0.00
3.86
1332
1360
2.946329
GCTAGAGAGAGTCGTCAATGGA
59.054
50.000
0.00
0.00
0.00
3.41
1333
1361
2.948979
AGCTAGAGAGAGTCGTCAATGG
59.051
50.000
0.00
0.00
0.00
3.16
1334
1362
4.814234
AGTAGCTAGAGAGAGTCGTCAATG
59.186
45.833
0.00
0.00
0.00
2.82
1335
1363
5.031066
AGTAGCTAGAGAGAGTCGTCAAT
57.969
43.478
0.00
0.00
0.00
2.57
1336
1364
4.435425
GAGTAGCTAGAGAGAGTCGTCAA
58.565
47.826
0.00
0.00
0.00
3.18
1337
1365
3.489568
CGAGTAGCTAGAGAGAGTCGTCA
60.490
52.174
0.00
0.00
0.00
4.35
1338
1366
3.047796
CGAGTAGCTAGAGAGAGTCGTC
58.952
54.545
0.00
0.00
0.00
4.20
1339
1367
2.223876
CCGAGTAGCTAGAGAGAGTCGT
60.224
54.545
8.03
0.00
0.00
4.34
1340
1368
2.223876
ACCGAGTAGCTAGAGAGAGTCG
60.224
54.545
0.00
0.00
0.00
4.18
1341
1369
3.464111
ACCGAGTAGCTAGAGAGAGTC
57.536
52.381
0.00
0.00
0.00
3.36
1342
1370
3.198200
TGAACCGAGTAGCTAGAGAGAGT
59.802
47.826
0.00
0.00
0.00
3.24
1343
1371
3.799366
TGAACCGAGTAGCTAGAGAGAG
58.201
50.000
0.00
0.00
0.00
3.20
1344
1372
3.908643
TGAACCGAGTAGCTAGAGAGA
57.091
47.619
0.00
0.00
0.00
3.10
1345
1373
3.880490
ACATGAACCGAGTAGCTAGAGAG
59.120
47.826
0.00
0.00
0.00
3.20
1346
1374
3.887352
ACATGAACCGAGTAGCTAGAGA
58.113
45.455
0.00
0.00
0.00
3.10
1347
1375
5.694816
CATACATGAACCGAGTAGCTAGAG
58.305
45.833
0.00
0.00
0.00
2.43
1348
1376
4.023107
GCATACATGAACCGAGTAGCTAGA
60.023
45.833
0.00
0.00
0.00
2.43
1349
1377
4.230657
GCATACATGAACCGAGTAGCTAG
58.769
47.826
0.00
0.00
0.00
3.42
1350
1378
3.634910
TGCATACATGAACCGAGTAGCTA
59.365
43.478
0.00
0.00
0.00
3.32
1351
1379
2.430694
TGCATACATGAACCGAGTAGCT
59.569
45.455
0.00
0.00
0.00
3.32
1352
1380
2.821546
TGCATACATGAACCGAGTAGC
58.178
47.619
0.00
0.00
0.00
3.58
1365
1393
2.488937
CAGTTTCTGTGCCATGCATACA
59.511
45.455
0.00
0.00
41.91
2.29
1367
1395
3.070476
TCAGTTTCTGTGCCATGCATA
57.930
42.857
0.00
0.00
41.91
3.14
1378
1406
5.291178
TCAAATGCAAACCATCAGTTTCTG
58.709
37.500
0.00
0.00
45.85
3.02
1379
1407
5.534207
TCAAATGCAAACCATCAGTTTCT
57.466
34.783
0.00
0.00
45.85
2.52
1393
1440
0.971959
GGGTGGCTGGATCAAATGCA
60.972
55.000
0.00
0.00
0.00
3.96
1529
1580
1.446792
CAGCGCTCACCACGATCTT
60.447
57.895
7.13
0.00
0.00
2.40
1547
1598
0.458543
TCGATCTTGGAAGTGCGAGC
60.459
55.000
0.00
0.00
32.37
5.03
1548
1599
1.656095
GTTCGATCTTGGAAGTGCGAG
59.344
52.381
0.00
0.00
35.47
5.03
1549
1600
1.000394
TGTTCGATCTTGGAAGTGCGA
60.000
47.619
0.00
0.00
33.51
5.10
1551
1602
2.413453
GAGTGTTCGATCTTGGAAGTGC
59.587
50.000
0.00
0.00
0.00
4.40
1565
1646
1.531578
GGGCTTTCAAGTCGAGTGTTC
59.468
52.381
0.00
0.00
0.00
3.18
1568
1649
1.813513
ATGGGCTTTCAAGTCGAGTG
58.186
50.000
0.00
0.00
0.00
3.51
1570
1651
3.600388
ACTAATGGGCTTTCAAGTCGAG
58.400
45.455
0.00
0.00
0.00
4.04
1571
1652
3.695830
ACTAATGGGCTTTCAAGTCGA
57.304
42.857
0.00
0.00
0.00
4.20
1573
1654
3.367395
GGCAACTAATGGGCTTTCAAGTC
60.367
47.826
0.00
0.00
0.00
3.01
1574
1655
2.562738
GGCAACTAATGGGCTTTCAAGT
59.437
45.455
0.00
0.00
0.00
3.16
1575
1656
3.236632
GGCAACTAATGGGCTTTCAAG
57.763
47.619
0.00
0.00
0.00
3.02
1590
1671
3.368843
GCAATGTAAATCAGCAAGGCAAC
59.631
43.478
0.00
0.00
0.00
4.17
1591
1672
3.587923
GCAATGTAAATCAGCAAGGCAA
58.412
40.909
0.00
0.00
0.00
4.52
1592
1673
2.094078
GGCAATGTAAATCAGCAAGGCA
60.094
45.455
0.00
0.00
0.00
4.75
1593
1674
2.094078
TGGCAATGTAAATCAGCAAGGC
60.094
45.455
0.00
0.00
0.00
4.35
1594
1675
3.872511
TGGCAATGTAAATCAGCAAGG
57.127
42.857
0.00
0.00
0.00
3.61
1595
1676
4.116961
CCATGGCAATGTAAATCAGCAAG
58.883
43.478
0.00
0.00
31.27
4.01
1596
1677
3.679361
GCCATGGCAATGTAAATCAGCAA
60.679
43.478
32.08
0.00
41.49
3.91
1597
1678
2.159071
GCCATGGCAATGTAAATCAGCA
60.159
45.455
32.08
0.00
41.49
4.41
1598
1679
2.476821
GCCATGGCAATGTAAATCAGC
58.523
47.619
32.08
0.00
41.49
4.26
1611
1692
1.268896
CGACTGATGAAATGCCATGGC
60.269
52.381
30.54
30.54
42.35
4.40
1612
1693
1.335810
CCGACTGATGAAATGCCATGG
59.664
52.381
7.63
7.63
0.00
3.66
1613
1694
2.019249
ACCGACTGATGAAATGCCATG
58.981
47.619
0.00
0.00
0.00
3.66
1614
1695
2.425143
ACCGACTGATGAAATGCCAT
57.575
45.000
0.00
0.00
0.00
4.40
1824
1905
1.131218
CGCACTGCACGATGAACTG
59.869
57.895
1.11
0.00
0.00
3.16
1960
2041
1.070105
TTGTACAGGGACACGCACC
59.930
57.895
0.00
0.00
0.00
5.01
2246
2327
1.748122
GTAGCCCGTCTCGGTGAGA
60.748
63.158
7.40
0.00
46.80
3.27
2314
2395
5.934625
AGAGATTGTAAAGTTTGATGACGCT
59.065
36.000
0.00
0.00
0.00
5.07
2344
2425
7.946655
ATTCGTACTTGTCCATACATACATG
57.053
36.000
0.00
0.00
34.97
3.21
2371
2452
2.040884
AGGAGGGGCGGCTATCAA
60.041
61.111
9.56
0.00
0.00
2.57
2372
2453
2.524394
GAGGAGGGGCGGCTATCA
60.524
66.667
9.56
0.00
0.00
2.15
2373
2454
3.315140
GGAGGAGGGGCGGCTATC
61.315
72.222
9.56
7.19
0.00
2.08
2374
2455
3.837213
GAGGAGGAGGGGCGGCTAT
62.837
68.421
9.56
0.00
0.00
2.97
2375
2456
4.541648
GAGGAGGAGGGGCGGCTA
62.542
72.222
9.56
0.00
0.00
3.93
2380
2461
4.890306
GGGAGGAGGAGGAGGGGC
62.890
77.778
0.00
0.00
0.00
5.80
2381
2462
3.039526
AGGGAGGAGGAGGAGGGG
61.040
72.222
0.00
0.00
0.00
4.79
2382
2463
2.612251
GAGGGAGGAGGAGGAGGG
59.388
72.222
0.00
0.00
0.00
4.30
2383
2464
2.612251
GGAGGGAGGAGGAGGAGG
59.388
72.222
0.00
0.00
0.00
4.30
2384
2465
2.328589
TGGGAGGGAGGAGGAGGAG
61.329
68.421
0.00
0.00
0.00
3.69
2385
2466
2.204624
TGGGAGGGAGGAGGAGGA
60.205
66.667
0.00
0.00
0.00
3.71
2386
2467
2.041405
GTGGGAGGGAGGAGGAGG
60.041
72.222
0.00
0.00
0.00
4.30
2387
2468
2.041405
GGTGGGAGGGAGGAGGAG
60.041
72.222
0.00
0.00
0.00
3.69
2388
2469
3.695825
GGGTGGGAGGGAGGAGGA
61.696
72.222
0.00
0.00
0.00
3.71
2389
2470
4.825679
GGGGTGGGAGGGAGGAGG
62.826
77.778
0.00
0.00
0.00
4.30
2390
2471
2.319410
CTAGGGGTGGGAGGGAGGAG
62.319
70.000
0.00
0.00
0.00
3.69
2391
2472
2.204721
TAGGGGTGGGAGGGAGGA
60.205
66.667
0.00
0.00
0.00
3.71
2392
2473
2.287251
CTAGGGGTGGGAGGGAGG
59.713
72.222
0.00
0.00
0.00
4.30
2393
2474
1.075151
GTCTAGGGGTGGGAGGGAG
60.075
68.421
0.00
0.00
0.00
4.30
2394
2475
1.865045
TGTCTAGGGGTGGGAGGGA
60.865
63.158
0.00
0.00
0.00
4.20
2395
2476
1.689582
GTGTCTAGGGGTGGGAGGG
60.690
68.421
0.00
0.00
0.00
4.30
2396
2477
1.689582
GGTGTCTAGGGGTGGGAGG
60.690
68.421
0.00
0.00
0.00
4.30
2397
2478
1.689582
GGGTGTCTAGGGGTGGGAG
60.690
68.421
0.00
0.00
0.00
4.30
2398
2479
2.453054
GGGTGTCTAGGGGTGGGA
59.547
66.667
0.00
0.00
0.00
4.37
2399
2480
2.691252
GGGGTGTCTAGGGGTGGG
60.691
72.222
0.00
0.00
0.00
4.61
2400
2481
1.689582
GAGGGGTGTCTAGGGGTGG
60.690
68.421
0.00
0.00
0.00
4.61
2401
2482
1.689582
GGAGGGGTGTCTAGGGGTG
60.690
68.421
0.00
0.00
0.00
4.61
2402
2483
2.785703
GGAGGGGTGTCTAGGGGT
59.214
66.667
0.00
0.00
0.00
4.95
2403
2484
2.040779
GGGAGGGGTGTCTAGGGG
60.041
72.222
0.00
0.00
0.00
4.79
2404
2485
1.075151
GAGGGAGGGGTGTCTAGGG
60.075
68.421
0.00
0.00
0.00
3.53
2405
2486
1.075151
GGAGGGAGGGGTGTCTAGG
60.075
68.421
0.00
0.00
0.00
3.02
2406
2487
0.105913
GAGGAGGGAGGGGTGTCTAG
60.106
65.000
0.00
0.00
0.00
2.43
2407
2488
1.591280
GGAGGAGGGAGGGGTGTCTA
61.591
65.000
0.00
0.00
0.00
2.59
2408
2489
2.781406
GAGGAGGGAGGGGTGTCT
59.219
66.667
0.00
0.00
0.00
3.41
2409
2490
2.365768
GGAGGAGGGAGGGGTGTC
60.366
72.222
0.00
0.00
0.00
3.67
2410
2491
2.876858
AGGAGGAGGGAGGGGTGT
60.877
66.667
0.00
0.00
0.00
4.16
2411
2492
2.041405
GAGGAGGAGGGAGGGGTG
60.041
72.222
0.00
0.00
0.00
4.61
2412
2493
3.369388
GGAGGAGGAGGGAGGGGT
61.369
72.222
0.00
0.00
0.00
4.95
2413
2494
4.179599
GGGAGGAGGAGGGAGGGG
62.180
77.778
0.00
0.00
0.00
4.79
2414
2495
1.705450
TAGGGAGGAGGAGGGAGGG
60.705
68.421
0.00
0.00
0.00
4.30
2415
2496
1.857777
CTAGGGAGGAGGAGGGAGG
59.142
68.421
0.00
0.00
0.00
4.30
2416
2497
1.155155
GCTAGGGAGGAGGAGGGAG
59.845
68.421
0.00
0.00
0.00
4.30
2417
2498
2.404750
GGCTAGGGAGGAGGAGGGA
61.405
68.421
0.00
0.00
0.00
4.20
2418
2499
2.202899
GGCTAGGGAGGAGGAGGG
59.797
72.222
0.00
0.00
0.00
4.30
2419
2500
2.203567
CGGCTAGGGAGGAGGAGG
60.204
72.222
0.00
0.00
0.00
4.30
2420
2501
2.915137
GCGGCTAGGGAGGAGGAG
60.915
72.222
0.00
0.00
0.00
3.69
2421
2502
4.541648
GGCGGCTAGGGAGGAGGA
62.542
72.222
0.00
0.00
0.00
3.71
2430
2511
4.548513
AGGAGGAGGGGCGGCTAG
62.549
72.222
9.56
0.00
0.00
3.42
2431
2512
4.541648
GAGGAGGAGGGGCGGCTA
62.542
72.222
9.56
0.00
0.00
3.93
2434
2515
3.157949
GAAGAGGAGGAGGGGCGG
61.158
72.222
0.00
0.00
0.00
6.13
2435
2516
3.157949
GGAAGAGGAGGAGGGGCG
61.158
72.222
0.00
0.00
0.00
6.13
2436
2517
2.770475
GGGAAGAGGAGGAGGGGC
60.770
72.222
0.00
0.00
0.00
5.80
2437
2518
0.692756
GAAGGGAAGAGGAGGAGGGG
60.693
65.000
0.00
0.00
0.00
4.79
2438
2519
0.692756
GGAAGGGAAGAGGAGGAGGG
60.693
65.000
0.00
0.00
0.00
4.30
2439
2520
0.341609
AGGAAGGGAAGAGGAGGAGG
59.658
60.000
0.00
0.00
0.00
4.30
2440
2521
1.788229
GAGGAAGGGAAGAGGAGGAG
58.212
60.000
0.00
0.00
0.00
3.69
2441
2522
0.033011
CGAGGAAGGGAAGAGGAGGA
60.033
60.000
0.00
0.00
0.00
3.71
2442
2523
1.681486
GCGAGGAAGGGAAGAGGAGG
61.681
65.000
0.00
0.00
0.00
4.30
2443
2524
1.681486
GGCGAGGAAGGGAAGAGGAG
61.681
65.000
0.00
0.00
0.00
3.69
2444
2525
1.686110
GGCGAGGAAGGGAAGAGGA
60.686
63.158
0.00
0.00
0.00
3.71
2445
2526
2.904131
GGCGAGGAAGGGAAGAGG
59.096
66.667
0.00
0.00
0.00
3.69
2446
2527
2.496817
CGGCGAGGAAGGGAAGAG
59.503
66.667
0.00
0.00
0.00
2.85
2447
2528
3.771160
GCGGCGAGGAAGGGAAGA
61.771
66.667
12.98
0.00
0.00
2.87
2448
2529
4.840005
GGCGGCGAGGAAGGGAAG
62.840
72.222
12.98
0.00
0.00
3.46
2530
2611
4.020617
TTCCCCACGCAGAGGCAG
62.021
66.667
0.00
0.00
41.24
4.85
2531
2612
4.329545
GTTCCCCACGCAGAGGCA
62.330
66.667
0.00
0.00
41.24
4.75
2532
2613
3.959991
GAGTTCCCCACGCAGAGGC
62.960
68.421
0.00
0.00
36.77
4.70
2533
2614
2.266055
GAGTTCCCCACGCAGAGG
59.734
66.667
0.00
0.00
38.25
3.69
2534
2615
2.266055
GGAGTTCCCCACGCAGAG
59.734
66.667
0.00
0.00
0.00
3.35
2535
2616
3.691342
CGGAGTTCCCCACGCAGA
61.691
66.667
0.00
0.00
0.00
4.26
2536
2617
4.760047
CCGGAGTTCCCCACGCAG
62.760
72.222
0.00
0.00
0.00
5.18
2538
2619
3.735037
GATCCGGAGTTCCCCACGC
62.735
68.421
11.34
0.00
0.00
5.34
2539
2620
2.058595
AGATCCGGAGTTCCCCACG
61.059
63.158
11.34
0.00
0.00
4.94
2540
2621
1.522569
CAGATCCGGAGTTCCCCAC
59.477
63.158
11.34
0.00
0.00
4.61
2541
2622
1.689233
CCAGATCCGGAGTTCCCCA
60.689
63.158
11.34
0.00
0.00
4.96
2542
2623
1.382695
TCCAGATCCGGAGTTCCCC
60.383
63.158
11.34
0.00
0.00
4.81
2543
2624
2.128729
CTCCAGATCCGGAGTTCCC
58.871
63.158
15.88
0.00
46.48
3.97
2563
2644
3.830192
CTTGCCAATGGAGCCGCC
61.830
66.667
2.05
0.00
37.10
6.13
2564
2645
3.830192
CCTTGCCAATGGAGCCGC
61.830
66.667
2.05
0.00
0.00
6.53
2565
2646
3.830192
GCCTTGCCAATGGAGCCG
61.830
66.667
2.05
0.00
0.00
5.52
2566
2647
2.681064
TGCCTTGCCAATGGAGCC
60.681
61.111
2.05
0.00
0.00
4.70
2567
2648
2.575461
GTGCCTTGCCAATGGAGC
59.425
61.111
2.05
0.00
0.00
4.70
2568
2649
2.703798
CCGTGCCTTGCCAATGGAG
61.704
63.158
2.05
0.00
0.00
3.86
2569
2650
2.676121
CCGTGCCTTGCCAATGGA
60.676
61.111
2.05
0.00
0.00
3.41
2570
2651
4.440127
GCCGTGCCTTGCCAATGG
62.440
66.667
0.00
0.00
0.00
3.16
2571
2652
4.440127
GGCCGTGCCTTGCCAATG
62.440
66.667
7.58
0.00
46.69
2.82
2599
2680
4.082523
AGATCCACCACCCGCACG
62.083
66.667
0.00
0.00
0.00
5.34
2600
2681
2.436646
CAGATCCACCACCCGCAC
60.437
66.667
0.00
0.00
0.00
5.34
2601
2682
3.716195
CCAGATCCACCACCCGCA
61.716
66.667
0.00
0.00
0.00
5.69
2603
2684
4.838152
CGCCAGATCCACCACCCG
62.838
72.222
0.00
0.00
0.00
5.28
2604
2685
3.682292
GACGCCAGATCCACCACCC
62.682
68.421
0.00
0.00
0.00
4.61
2605
2686
2.125106
GACGCCAGATCCACCACC
60.125
66.667
0.00
0.00
0.00
4.61
2606
2687
2.125106
GGACGCCAGATCCACCAC
60.125
66.667
0.00
0.00
36.15
4.16
2607
2688
3.399181
GGGACGCCAGATCCACCA
61.399
66.667
0.00
0.00
38.06
4.17
2638
2719
3.400599
AATGACCACCGGATCCCGC
62.401
63.158
9.46
0.00
46.86
6.13
2640
2721
1.152963
CCAATGACCACCGGATCCC
60.153
63.158
9.46
0.00
0.00
3.85
2641
2722
1.823899
GCCAATGACCACCGGATCC
60.824
63.158
9.46
0.00
0.00
3.36
2642
2723
2.180204
CGCCAATGACCACCGGATC
61.180
63.158
9.46
2.89
0.00
3.36
2643
2724
2.124736
CGCCAATGACCACCGGAT
60.125
61.111
9.46
0.00
0.00
4.18
2644
2725
4.402528
CCGCCAATGACCACCGGA
62.403
66.667
9.46
0.00
41.34
5.14
2645
2726
4.715523
ACCGCCAATGACCACCGG
62.716
66.667
0.00
0.00
44.19
5.28
2646
2727
3.124921
GACCGCCAATGACCACCG
61.125
66.667
0.00
0.00
0.00
4.94
2647
2728
2.033448
TGACCGCCAATGACCACC
59.967
61.111
0.00
0.00
0.00
4.61
2648
2729
2.690778
GCTGACCGCCAATGACCAC
61.691
63.158
0.00
0.00
0.00
4.16
2649
2730
2.359850
GCTGACCGCCAATGACCA
60.360
61.111
0.00
0.00
0.00
4.02
2650
2731
3.499737
CGCTGACCGCCAATGACC
61.500
66.667
0.00
0.00
34.21
4.02
2651
2732
3.499737
CCGCTGACCGCCAATGAC
61.500
66.667
0.00
0.00
35.03
3.06
2652
2733
4.015406
ACCGCTGACCGCCAATGA
62.015
61.111
0.00
0.00
35.03
2.57
2653
2734
3.803082
CACCGCTGACCGCCAATG
61.803
66.667
0.00
0.00
35.03
2.82
2658
2739
3.723348
GAAACCACCGCTGACCGC
61.723
66.667
0.00
0.00
35.03
5.68
2659
2740
2.030562
AGAAACCACCGCTGACCG
59.969
61.111
0.00
0.00
0.00
4.79
2660
2741
2.617274
GCAGAAACCACCGCTGACC
61.617
63.158
0.00
0.00
0.00
4.02
2661
2742
2.946762
GCAGAAACCACCGCTGAC
59.053
61.111
0.00
0.00
0.00
3.51
2662
2743
2.449031
ATCGCAGAAACCACCGCTGA
62.449
55.000
0.00
0.00
43.58
4.26
2663
2744
2.034879
ATCGCAGAAACCACCGCTG
61.035
57.895
0.00
0.00
43.58
5.18
2664
2745
2.034879
CATCGCAGAAACCACCGCT
61.035
57.895
0.00
0.00
43.58
5.52
2665
2746
2.480555
CATCGCAGAAACCACCGC
59.519
61.111
0.00
0.00
43.58
5.68
2666
2747
3.039202
GCCATCGCAGAAACCACCG
62.039
63.158
0.00
0.00
43.58
4.94
2667
2748
2.700773
GGCCATCGCAGAAACCACC
61.701
63.158
0.00
0.00
43.58
4.61
2668
2749
2.877691
GGCCATCGCAGAAACCAC
59.122
61.111
0.00
0.00
43.58
4.16
2669
2750
2.745884
CGGCCATCGCAGAAACCA
60.746
61.111
2.24
0.00
43.58
3.67
2670
2751
3.508840
CCGGCCATCGCAGAAACC
61.509
66.667
2.24
0.00
43.58
3.27
2671
2752
2.746277
ACCGGCCATCGCAGAAAC
60.746
61.111
0.00
0.00
43.58
2.78
2672
2753
2.745884
CACCGGCCATCGCAGAAA
60.746
61.111
0.00
0.00
43.58
2.52
2686
2767
3.490759
CACCAGATCGCGTGCACC
61.491
66.667
12.15
3.09
0.00
5.01
2690
2771
2.887568
GAGGCACCAGATCGCGTG
60.888
66.667
5.77
10.00
0.00
5.34
2691
2772
4.148825
GGAGGCACCAGATCGCGT
62.149
66.667
5.77
0.00
38.79
6.01
2692
2773
4.899239
GGGAGGCACCAGATCGCG
62.899
72.222
0.00
0.00
41.20
5.87
2693
2774
4.554036
GGGGAGGCACCAGATCGC
62.554
72.222
2.69
0.00
41.20
4.58
2694
2775
2.765807
AGGGGAGGCACCAGATCG
60.766
66.667
2.69
0.00
41.20
3.69
2695
2776
2.447714
GGAGGGGAGGCACCAGATC
61.448
68.421
2.69
0.00
41.20
2.75
2696
2777
2.367512
GGAGGGGAGGCACCAGAT
60.368
66.667
2.69
0.00
41.20
2.90
2697
2778
3.615811
AGGAGGGGAGGCACCAGA
61.616
66.667
2.69
0.00
41.20
3.86
2698
2779
3.086600
GAGGAGGGGAGGCACCAG
61.087
72.222
2.69
0.00
41.20
4.00
2699
2780
4.741239
GGAGGAGGGGAGGCACCA
62.741
72.222
2.69
0.00
41.20
4.17
2704
2785
2.789979
AAACAGGGGAGGAGGGGAGG
62.790
65.000
0.00
0.00
0.00
4.30
2705
2786
1.229984
AAACAGGGGAGGAGGGGAG
60.230
63.158
0.00
0.00
0.00
4.30
2706
2787
1.541368
CAAACAGGGGAGGAGGGGA
60.541
63.158
0.00
0.00
0.00
4.81
2707
2788
2.616458
CCAAACAGGGGAGGAGGGG
61.616
68.421
0.00
0.00
0.00
4.79
2708
2789
3.090765
CCAAACAGGGGAGGAGGG
58.909
66.667
0.00
0.00
0.00
4.30
2709
2790
2.356667
GCCAAACAGGGGAGGAGG
59.643
66.667
0.00
0.00
38.09
4.30
2716
2797
3.673484
CCTGCACGCCAAACAGGG
61.673
66.667
0.19
0.00
45.97
4.45
2718
2799
1.518056
ATGACCTGCACGCCAAACAG
61.518
55.000
0.00
0.00
0.00
3.16
2719
2800
1.514678
GATGACCTGCACGCCAAACA
61.515
55.000
0.00
0.00
0.00
2.83
2720
2801
1.210155
GATGACCTGCACGCCAAAC
59.790
57.895
0.00
0.00
0.00
2.93
2721
2802
1.971167
GGATGACCTGCACGCCAAA
60.971
57.895
0.00
0.00
0.00
3.28
2722
2803
2.359850
GGATGACCTGCACGCCAA
60.360
61.111
0.00
0.00
0.00
4.52
2723
2804
3.321648
AGGATGACCTGCACGCCA
61.322
61.111
0.00
0.00
45.92
5.69
2742
2823
3.753070
CTAGGAAGCGCGGTCCGAC
62.753
68.421
22.47
5.98
40.36
4.79
2743
2824
3.515286
CTAGGAAGCGCGGTCCGA
61.515
66.667
22.47
18.07
40.36
4.55
2744
2825
4.570663
CCTAGGAAGCGCGGTCCG
62.571
72.222
22.47
6.99
40.36
4.79
2745
2826
4.222847
CCCTAGGAAGCGCGGTCC
62.223
72.222
21.61
21.61
35.17
4.46
2746
2827
3.427598
GACCCTAGGAAGCGCGGTC
62.428
68.421
12.91
11.72
36.52
4.79
2747
2828
3.459063
GACCCTAGGAAGCGCGGT
61.459
66.667
11.48
4.23
0.00
5.68
2748
2829
4.570663
CGACCCTAGGAAGCGCGG
62.571
72.222
11.48
0.00
0.00
6.46
2750
2831
4.893601
GGCGACCCTAGGAAGCGC
62.894
72.222
25.05
25.05
46.20
5.92
2751
2832
4.570663
CGGCGACCCTAGGAAGCG
62.571
72.222
11.48
11.72
31.97
4.68
2752
2833
4.222847
CCGGCGACCCTAGGAAGC
62.223
72.222
11.48
12.24
0.00
3.86
2753
2834
2.294132
GAACCGGCGACCCTAGGAAG
62.294
65.000
11.48
1.77
0.00
3.46
2754
2835
2.284112
AACCGGCGACCCTAGGAA
60.284
61.111
11.48
0.00
0.00
3.36
2755
2836
2.757099
GAACCGGCGACCCTAGGA
60.757
66.667
11.48
0.00
0.00
2.94
2756
2837
2.758737
AGAACCGGCGACCCTAGG
60.759
66.667
9.30
0.06
0.00
3.02
2757
2838
1.033746
TACAGAACCGGCGACCCTAG
61.034
60.000
9.30
0.00
0.00
3.02
2758
2839
1.001020
TACAGAACCGGCGACCCTA
60.001
57.895
9.30
0.00
0.00
3.53
2759
2840
2.283388
TACAGAACCGGCGACCCT
60.283
61.111
9.30
0.00
0.00
4.34
2760
2841
2.125793
GTACAGAACCGGCGACCC
60.126
66.667
9.30
0.00
0.00
4.46
2761
2842
1.445582
CTGTACAGAACCGGCGACC
60.446
63.158
18.45
0.00
0.00
4.79
2762
2843
1.445582
CCTGTACAGAACCGGCGAC
60.446
63.158
24.68
0.00
0.00
5.19
2763
2844
1.592400
CTCCTGTACAGAACCGGCGA
61.592
60.000
24.68
9.72
32.70
5.54
2764
2845
1.153823
CTCCTGTACAGAACCGGCG
60.154
63.158
24.68
0.00
32.70
6.46
2765
2846
1.218316
CCTCCTGTACAGAACCGGC
59.782
63.158
24.68
0.00
32.70
6.13
2766
2847
1.218316
GCCTCCTGTACAGAACCGG
59.782
63.158
24.68
17.34
33.90
5.28
2767
2848
1.153823
CGCCTCCTGTACAGAACCG
60.154
63.158
24.68
15.72
0.00
4.44
2768
2849
1.448013
GCGCCTCCTGTACAGAACC
60.448
63.158
24.68
8.34
0.00
3.62
2769
2850
0.737715
CAGCGCCTCCTGTACAGAAC
60.738
60.000
24.68
9.07
0.00
3.01
2770
2851
1.591703
CAGCGCCTCCTGTACAGAA
59.408
57.895
24.68
2.15
0.00
3.02
2771
2852
3.006756
GCAGCGCCTCCTGTACAGA
62.007
63.158
24.68
9.38
35.28
3.41
2772
2853
2.510238
GCAGCGCCTCCTGTACAG
60.510
66.667
16.34
16.34
35.28
2.74
2773
2854
2.997315
AGCAGCGCCTCCTGTACA
60.997
61.111
2.29
0.00
35.28
2.90
2774
2855
2.510238
CAGCAGCGCCTCCTGTAC
60.510
66.667
2.29
0.00
35.28
2.90
2775
2856
3.774528
CCAGCAGCGCCTCCTGTA
61.775
66.667
2.29
0.00
35.28
2.74
2789
2870
2.593468
CTATCACACCCCGCCACCAG
62.593
65.000
0.00
0.00
0.00
4.00
2790
2871
2.608059
TATCACACCCCGCCACCA
60.608
61.111
0.00
0.00
0.00
4.17
2791
2872
2.189521
CTATCACACCCCGCCACC
59.810
66.667
0.00
0.00
0.00
4.61
2792
2873
2.513897
GCTATCACACCCCGCCAC
60.514
66.667
0.00
0.00
0.00
5.01
2793
2874
3.792736
GGCTATCACACCCCGCCA
61.793
66.667
0.00
0.00
40.41
5.69
2794
2875
3.480133
AGGCTATCACACCCCGCC
61.480
66.667
0.00
0.00
40.99
6.13
2795
2876
2.203070
CAGGCTATCACACCCCGC
60.203
66.667
0.00
0.00
0.00
6.13
2796
2877
2.505982
CCAGGCTATCACACCCCG
59.494
66.667
0.00
0.00
0.00
5.73
2878
2959
4.035208
CACGCTTAACTTTGGAGTTCTGTT
59.965
41.667
0.00
0.00
44.75
3.16
2955
3036
0.036105
TTGTCCTCACTCATGCGCAT
60.036
50.000
19.28
19.28
0.00
4.73
3001
3082
2.269940
GGATCTATACTGGCCCCACAT
58.730
52.381
0.00
0.00
0.00
3.21
3260
3341
6.126652
CCCTAATAAGCCAGGCTATCACATAT
60.127
42.308
16.56
4.68
38.25
1.78
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.