Multiple sequence alignment - TraesCS1A01G134800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G134800 chr1A 100.000 4064 0 0 1 4064 204825245 204829308 0.000000e+00 7505.0
1 TraesCS1A01G134800 chr1A 99.623 265 1 0 3556 3820 367443129 367442865 6.110000e-133 484.0
2 TraesCS1A01G134800 chr1A 82.524 206 27 5 1928 2127 176456472 176456674 5.400000e-39 172.0
3 TraesCS1A01G134800 chr1D 97.542 1261 20 2 955 2206 155346193 155344935 0.000000e+00 2146.0
4 TraesCS1A01G134800 chr1D 95.837 1273 25 9 2311 3558 155344970 155343701 0.000000e+00 2032.0
5 TraesCS1A01G134800 chr1D 95.704 838 25 1 91 917 245088637 245089474 0.000000e+00 1338.0
6 TraesCS1A01G134800 chr1D 99.190 247 2 0 3818 4064 155343702 155343456 2.880000e-121 446.0
7 TraesCS1A01G134800 chr1D 97.778 45 1 0 926 970 155346252 155346208 1.210000e-10 78.7
8 TraesCS1A01G134800 chr1B 95.780 1256 25 7 969 2206 220751288 220752533 0.000000e+00 2001.0
9 TraesCS1A01G134800 chr1B 93.925 1070 21 14 2311 3355 220752498 220753548 0.000000e+00 1576.0
10 TraesCS1A01G134800 chr1B 97.674 258 6 0 3301 3558 220753566 220753823 1.040000e-120 444.0
11 TraesCS1A01G134800 chr1B 97.166 247 7 0 3818 4064 220753822 220754068 6.280000e-113 418.0
12 TraesCS1A01G134800 chr1B 82.078 385 65 3 423 806 623675167 623675548 3.920000e-85 326.0
13 TraesCS1A01G134800 chr2A 95.863 846 20 8 91 925 80228136 80227295 0.000000e+00 1354.0
14 TraesCS1A01G134800 chr2A 90.553 434 27 8 500 919 557053026 557052593 2.740000e-156 562.0
15 TraesCS1A01G134800 chr2A 97.398 269 6 1 3551 3819 160813239 160812972 1.330000e-124 457.0
16 TraesCS1A01G134800 chr2A 96.715 274 6 3 3550 3821 759368115 759367843 1.720000e-123 453.0
17 TraesCS1A01G134800 chr2A 91.373 255 21 1 248 502 557055117 557054864 8.360000e-92 348.0
18 TraesCS1A01G134800 chr2A 98.611 72 1 0 2244 2315 80477634 80477563 1.190000e-25 128.0
19 TraesCS1A01G134800 chr3D 95.823 838 24 1 91 917 468434097 468433260 0.000000e+00 1343.0
20 TraesCS1A01G134800 chr3D 81.308 214 29 6 1878 2091 576775170 576774968 3.250000e-36 163.0
21 TraesCS1A01G134800 chr5D 94.749 838 30 2 91 917 303717552 303718386 0.000000e+00 1291.0
22 TraesCS1A01G134800 chr4D 83.095 840 126 11 91 917 425122347 425121511 0.000000e+00 750.0
23 TraesCS1A01G134800 chr4B 82.635 835 136 2 91 917 32961829 32960996 0.000000e+00 730.0
24 TraesCS1A01G134800 chr4B 87.578 161 16 4 2004 2163 416248157 416248314 2.490000e-42 183.0
25 TraesCS1A01G134800 chrUn 87.287 527 50 12 1102 1625 76000745 76000233 1.630000e-163 586.0
26 TraesCS1A01G134800 chrUn 83.234 334 55 1 2769 3101 76000221 75999888 5.100000e-79 305.0
27 TraesCS1A01G134800 chr6D 87.072 526 53 7 1102 1625 5838544 5839056 7.570000e-162 580.0
28 TraesCS1A01G134800 chr6D 76.741 761 106 35 2803 3556 4928244 4928940 3.860000e-95 359.0
29 TraesCS1A01G134800 chr6D 85.928 334 47 0 2768 3101 5839064 5839397 1.390000e-94 357.0
30 TraesCS1A01G134800 chr6D 72.306 863 202 27 87 925 86765933 86766782 6.790000e-58 235.0
31 TraesCS1A01G134800 chr6D 92.754 69 5 0 849 917 26352560 26352492 2.580000e-17 100.0
32 TraesCS1A01G134800 chr6A 86.717 527 59 6 1102 1625 5206529 5207047 3.520000e-160 575.0
33 TraesCS1A01G134800 chr6A 95.730 281 9 3 3553 3830 527506448 527506168 2.230000e-122 449.0
34 TraesCS1A01G134800 chr6A 86.826 334 44 0 2768 3101 5207055 5207388 1.380000e-99 374.0
35 TraesCS1A01G134800 chr7A 97.133 279 8 0 3551 3829 586627780 586627502 4.750000e-129 472.0
36 TraesCS1A01G134800 chr7A 97.753 267 6 0 3554 3820 253796046 253795780 1.030000e-125 460.0
37 TraesCS1A01G134800 chr7A 96.350 274 8 2 3554 3826 271301964 271302236 2.230000e-122 449.0
38 TraesCS1A01G134800 chr4A 97.091 275 7 1 3551 3825 192564952 192565225 2.860000e-126 462.0
39 TraesCS1A01G134800 chr4A 84.049 163 21 4 2004 2163 135654423 135654263 7.040000e-33 152.0
40 TraesCS1A01G134800 chr3A 97.407 270 6 1 3552 3820 22933667 22933398 3.700000e-125 459.0
41 TraesCS1A01G134800 chr7B 75.793 851 177 19 87 917 479996167 479997008 1.760000e-108 403.0
42 TraesCS1A01G134800 chr7B 97.297 74 2 0 2244 2317 726369791 726369718 4.260000e-25 126.0
43 TraesCS1A01G134800 chr3B 81.435 474 74 4 444 904 551009630 551009158 3.840000e-100 375.0
44 TraesCS1A01G134800 chr3B 98.611 72 1 0 2244 2315 421238910 421238839 1.190000e-25 128.0
45 TraesCS1A01G134800 chr3B 90.625 96 4 5 2244 2338 542135375 542135466 5.520000e-24 122.0
46 TraesCS1A01G134800 chr3B 91.860 86 5 1 2247 2330 453164856 453164771 7.140000e-23 119.0
47 TraesCS1A01G134800 chr6B 84.030 263 35 5 1891 2150 621310185 621309927 3.140000e-61 246.0
48 TraesCS1A01G134800 chr6B 98.611 72 1 0 2244 2315 706167462 706167391 1.190000e-25 128.0
49 TraesCS1A01G134800 chr5A 96.296 81 1 2 2245 2325 557575232 557575310 9.170000e-27 132.0
50 TraesCS1A01G134800 chr5A 96.296 81 1 2 2245 2325 557864384 557864462 9.170000e-27 132.0
51 TraesCS1A01G134800 chr2B 98.611 72 1 0 2244 2315 39335670 39335741 1.190000e-25 128.0
52 TraesCS1A01G134800 chr2B 95.588 68 2 1 850 917 785751243 785751309 1.540000e-19 108.0
53 TraesCS1A01G134800 chr7D 92.424 66 5 0 1 66 585392257 585392192 1.200000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G134800 chr1A 204825245 204829308 4063 False 7505.000 7505 100.00000 1 4064 1 chr1A.!!$F2 4063
1 TraesCS1A01G134800 chr1D 245088637 245089474 837 False 1338.000 1338 95.70400 91 917 1 chr1D.!!$F1 826
2 TraesCS1A01G134800 chr1D 155343456 155346252 2796 True 1175.675 2146 97.58675 926 4064 4 chr1D.!!$R1 3138
3 TraesCS1A01G134800 chr1B 220751288 220754068 2780 False 1109.750 2001 96.13625 969 4064 4 chr1B.!!$F2 3095
4 TraesCS1A01G134800 chr2A 80227295 80228136 841 True 1354.000 1354 95.86300 91 925 1 chr2A.!!$R1 834
5 TraesCS1A01G134800 chr2A 557052593 557055117 2524 True 455.000 562 90.96300 248 919 2 chr2A.!!$R5 671
6 TraesCS1A01G134800 chr3D 468433260 468434097 837 True 1343.000 1343 95.82300 91 917 1 chr3D.!!$R1 826
7 TraesCS1A01G134800 chr5D 303717552 303718386 834 False 1291.000 1291 94.74900 91 917 1 chr5D.!!$F1 826
8 TraesCS1A01G134800 chr4D 425121511 425122347 836 True 750.000 750 83.09500 91 917 1 chr4D.!!$R1 826
9 TraesCS1A01G134800 chr4B 32960996 32961829 833 True 730.000 730 82.63500 91 917 1 chr4B.!!$R1 826
10 TraesCS1A01G134800 chrUn 75999888 76000745 857 True 445.500 586 85.26050 1102 3101 2 chrUn.!!$R1 1999
11 TraesCS1A01G134800 chr6D 5838544 5839397 853 False 468.500 580 86.50000 1102 3101 2 chr6D.!!$F3 1999
12 TraesCS1A01G134800 chr6D 4928244 4928940 696 False 359.000 359 76.74100 2803 3556 1 chr6D.!!$F1 753
13 TraesCS1A01G134800 chr6D 86765933 86766782 849 False 235.000 235 72.30600 87 925 1 chr6D.!!$F2 838
14 TraesCS1A01G134800 chr6A 5206529 5207388 859 False 474.500 575 86.77150 1102 3101 2 chr6A.!!$F1 1999
15 TraesCS1A01G134800 chr7B 479996167 479997008 841 False 403.000 403 75.79300 87 917 1 chr7B.!!$F1 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 2827 0.099791 AACCAAACACGCTCCAAACG 59.900 50.000 0.0 0.0 0.00 3.60 F
1004 2903 1.006162 GGTTAAACACCCAGCCCCATA 59.994 52.381 0.0 0.0 40.19 2.74 F
2844 4789 1.064166 CCCTCCCTCTGCAATGTTCAT 60.064 52.381 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2909 4854 0.327867 ATCTGGGGAGATCTGGCCAA 60.328 55.0 7.01 0.0 0.00 4.52 R
2996 4941 0.258774 GGGGCATTTCTTCCCTGCTA 59.741 55.0 0.00 0.0 42.25 3.49 R
3803 5815 0.032017 AGCATACTCCCTCCGTTCCT 60.032 55.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.857694 TTTAGGGACTTTGGACTTATAAGTTG 57.142 34.615 18.96 9.81 38.78 3.16
26 27 5.816682 AGGGACTTTGGACTTATAAGTTGG 58.183 41.667 18.96 10.07 34.84 3.77
27 28 4.948004 GGGACTTTGGACTTATAAGTTGGG 59.052 45.833 18.96 10.37 39.88 4.12
28 29 4.948004 GGACTTTGGACTTATAAGTTGGGG 59.052 45.833 18.96 10.96 39.88 4.96
29 30 4.341487 ACTTTGGACTTATAAGTTGGGGC 58.659 43.478 18.96 6.19 39.88 5.80
30 31 4.044191 ACTTTGGACTTATAAGTTGGGGCT 59.956 41.667 18.96 0.00 39.88 5.19
31 32 5.252164 ACTTTGGACTTATAAGTTGGGGCTA 59.748 40.000 18.96 1.74 39.88 3.93
32 33 5.782677 TTGGACTTATAAGTTGGGGCTAA 57.217 39.130 18.96 7.60 39.88 3.09
33 34 5.782677 TGGACTTATAAGTTGGGGCTAAA 57.217 39.130 18.96 0.00 39.88 1.85
34 35 6.142259 TGGACTTATAAGTTGGGGCTAAAA 57.858 37.500 18.96 0.00 39.88 1.52
35 36 6.553857 TGGACTTATAAGTTGGGGCTAAAAA 58.446 36.000 18.96 0.00 39.88 1.94
57 58 8.934023 AAAAATGTCCTAGAACTTATGAACCA 57.066 30.769 0.00 0.00 0.00 3.67
58 59 8.934023 AAAATGTCCTAGAACTTATGAACCAA 57.066 30.769 0.00 0.00 0.00 3.67
59 60 9.533831 AAAATGTCCTAGAACTTATGAACCAAT 57.466 29.630 0.00 0.00 0.00 3.16
60 61 8.738645 AATGTCCTAGAACTTATGAACCAATC 57.261 34.615 0.00 0.00 0.00 2.67
61 62 7.252612 TGTCCTAGAACTTATGAACCAATCA 57.747 36.000 0.00 0.00 43.67 2.57
62 63 7.331026 TGTCCTAGAACTTATGAACCAATCAG 58.669 38.462 0.00 0.00 42.53 2.90
63 64 6.763610 GTCCTAGAACTTATGAACCAATCAGG 59.236 42.308 0.00 0.00 42.53 3.86
64 65 6.058183 CCTAGAACTTATGAACCAATCAGGG 58.942 44.000 0.00 0.00 42.53 4.45
65 66 4.273318 AGAACTTATGAACCAATCAGGGC 58.727 43.478 0.00 0.00 42.53 5.19
66 67 4.018050 AGAACTTATGAACCAATCAGGGCT 60.018 41.667 0.00 0.00 42.53 5.19
67 68 4.322057 ACTTATGAACCAATCAGGGCTT 57.678 40.909 0.00 0.00 42.53 4.35
68 69 4.677182 ACTTATGAACCAATCAGGGCTTT 58.323 39.130 0.00 0.00 42.53 3.51
69 70 5.826643 ACTTATGAACCAATCAGGGCTTTA 58.173 37.500 0.00 0.00 42.53 1.85
70 71 6.252995 ACTTATGAACCAATCAGGGCTTTAA 58.747 36.000 0.00 0.00 42.53 1.52
71 72 6.152831 ACTTATGAACCAATCAGGGCTTTAAC 59.847 38.462 0.00 0.00 42.53 2.01
72 73 3.161866 TGAACCAATCAGGGCTTTAACC 58.838 45.455 0.00 0.00 43.89 2.85
73 74 2.990740 ACCAATCAGGGCTTTAACCA 57.009 45.000 0.00 0.00 43.89 3.67
74 75 3.473113 ACCAATCAGGGCTTTAACCAT 57.527 42.857 0.00 0.00 43.89 3.55
75 76 3.099141 ACCAATCAGGGCTTTAACCATG 58.901 45.455 0.00 0.00 42.89 3.66
76 77 2.431782 CCAATCAGGGCTTTAACCATGG 59.568 50.000 11.19 11.19 41.82 3.66
77 78 3.364549 CAATCAGGGCTTTAACCATGGA 58.635 45.455 21.47 0.00 41.82 3.41
78 79 3.962718 CAATCAGGGCTTTAACCATGGAT 59.037 43.478 21.47 9.83 41.82 3.41
79 80 3.756082 TCAGGGCTTTAACCATGGATT 57.244 42.857 21.47 11.61 41.82 3.01
80 81 4.059773 TCAGGGCTTTAACCATGGATTT 57.940 40.909 21.47 5.69 41.82 2.17
81 82 5.199982 TCAGGGCTTTAACCATGGATTTA 57.800 39.130 21.47 4.53 41.82 1.40
82 83 5.776358 TCAGGGCTTTAACCATGGATTTAT 58.224 37.500 21.47 1.32 41.82 1.40
83 84 6.916909 TCAGGGCTTTAACCATGGATTTATA 58.083 36.000 21.47 1.97 41.82 0.98
84 85 7.004086 TCAGGGCTTTAACCATGGATTTATAG 58.996 38.462 21.47 12.65 41.82 1.31
85 86 6.209391 CAGGGCTTTAACCATGGATTTATAGG 59.791 42.308 21.47 1.77 37.85 2.57
89 90 6.265422 GCTTTAACCATGGATTTATAGGTGCT 59.735 38.462 21.47 0.00 31.86 4.40
165 166 1.945354 GCTCCACCGATCTTCACCGA 61.945 60.000 0.00 0.00 0.00 4.69
357 358 2.795329 TGTGAAGGAATGAAGGGAAGC 58.205 47.619 0.00 0.00 0.00 3.86
543 2384 2.299867 GTGCATGTCACTTTTTCCCCAT 59.700 45.455 11.51 0.00 42.38 4.00
551 2392 1.077005 ACTTTTTCCCCATGGCTGCTA 59.923 47.619 6.09 0.00 0.00 3.49
617 2458 5.837437 TGGTTGCGACAGAAATTAATGTTT 58.163 33.333 6.39 0.00 0.00 2.83
670 2513 5.407387 GGCTCTCGTACAAACTATCAACAAA 59.593 40.000 0.00 0.00 0.00 2.83
804 2649 5.404366 CCGCGCATAAATTAGCTAAGTTAGA 59.596 40.000 25.28 11.07 30.62 2.10
906 2775 4.165779 AGAAAATAAAGCGGCGACATTTG 58.834 39.130 12.98 0.00 0.00 2.32
958 2827 0.099791 AACCAAACACGCTCCAAACG 59.900 50.000 0.00 0.00 0.00 3.60
1002 2901 1.154221 GGTTAAACACCCAGCCCCA 59.846 57.895 0.00 0.00 40.19 4.96
1004 2903 1.006162 GGTTAAACACCCAGCCCCATA 59.994 52.381 0.00 0.00 40.19 2.74
1005 2904 2.557901 GGTTAAACACCCAGCCCCATAA 60.558 50.000 0.00 0.00 40.19 1.90
1909 3816 4.141711 TGGGTCAAGACTAAGGCATGATAC 60.142 45.833 0.00 0.00 0.00 2.24
1918 3825 7.501844 AGACTAAGGCATGATACTCCTAAAAC 58.498 38.462 0.00 0.00 0.00 2.43
2185 4103 7.008086 GTGTAGCGTACTAGTTGTCAATTAGTG 59.992 40.741 23.82 13.30 35.13 2.74
2186 4104 6.022163 AGCGTACTAGTTGTCAATTAGTGT 57.978 37.500 23.82 7.75 35.13 3.55
2187 4105 5.862323 AGCGTACTAGTTGTCAATTAGTGTG 59.138 40.000 23.82 17.96 35.13 3.82
2188 4106 5.444218 GCGTACTAGTTGTCAATTAGTGTGC 60.444 44.000 23.82 21.90 35.13 4.57
2189 4107 5.862323 CGTACTAGTTGTCAATTAGTGTGCT 59.138 40.000 23.82 5.93 35.13 4.40
2190 4108 6.183359 CGTACTAGTTGTCAATTAGTGTGCTG 60.183 42.308 23.82 10.07 35.13 4.41
2191 4109 5.611374 ACTAGTTGTCAATTAGTGTGCTGT 58.389 37.500 17.30 0.00 33.33 4.40
2192 4110 6.055588 ACTAGTTGTCAATTAGTGTGCTGTT 58.944 36.000 17.30 0.00 33.33 3.16
2193 4111 5.424121 AGTTGTCAATTAGTGTGCTGTTC 57.576 39.130 0.00 0.00 0.00 3.18
2194 4112 5.126067 AGTTGTCAATTAGTGTGCTGTTCT 58.874 37.500 0.00 0.00 0.00 3.01
2195 4113 6.288294 AGTTGTCAATTAGTGTGCTGTTCTA 58.712 36.000 0.00 0.00 0.00 2.10
2196 4114 6.936900 AGTTGTCAATTAGTGTGCTGTTCTAT 59.063 34.615 0.00 0.00 0.00 1.98
2197 4115 6.968131 TGTCAATTAGTGTGCTGTTCTATC 57.032 37.500 0.00 0.00 0.00 2.08
2198 4116 6.701340 TGTCAATTAGTGTGCTGTTCTATCT 58.299 36.000 0.00 0.00 0.00 1.98
2199 4117 7.836842 TGTCAATTAGTGTGCTGTTCTATCTA 58.163 34.615 0.00 0.00 0.00 1.98
2200 4118 7.759886 TGTCAATTAGTGTGCTGTTCTATCTAC 59.240 37.037 0.00 0.00 0.00 2.59
2201 4119 7.976734 GTCAATTAGTGTGCTGTTCTATCTACT 59.023 37.037 0.00 0.00 0.00 2.57
2202 4120 9.185680 TCAATTAGTGTGCTGTTCTATCTACTA 57.814 33.333 0.00 0.00 0.00 1.82
2203 4121 9.973450 CAATTAGTGTGCTGTTCTATCTACTAT 57.027 33.333 0.00 0.00 0.00 2.12
2206 4124 7.209471 AGTGTGCTGTTCTATCTACTATAGC 57.791 40.000 0.00 0.00 0.00 2.97
2207 4125 6.773200 AGTGTGCTGTTCTATCTACTATAGCA 59.227 38.462 0.00 0.00 37.56 3.49
2209 4127 6.081049 GTGCTGTTCTATCTACTATAGCACG 58.919 44.000 9.81 0.00 46.58 5.34
2210 4128 5.763698 TGCTGTTCTATCTACTATAGCACGT 59.236 40.000 0.00 0.00 35.27 4.49
2211 4129 6.081049 GCTGTTCTATCTACTATAGCACGTG 58.919 44.000 12.28 12.28 0.00 4.49
2212 4130 6.293516 GCTGTTCTATCTACTATAGCACGTGT 60.294 42.308 18.38 6.65 0.00 4.49
2213 4131 7.095313 GCTGTTCTATCTACTATAGCACGTGTA 60.095 40.741 18.38 8.75 0.00 2.90
2214 4132 8.307921 TGTTCTATCTACTATAGCACGTGTAG 57.692 38.462 18.38 13.26 35.15 2.74
2215 4133 6.964741 TCTATCTACTATAGCACGTGTAGC 57.035 41.667 18.38 2.26 34.19 3.58
2249 4167 4.915158 GTAGCGTACTACTCCCTCATTT 57.085 45.455 0.00 0.00 44.61 2.32
2250 4168 5.259832 GTAGCGTACTACTCCCTCATTTT 57.740 43.478 0.00 0.00 44.61 1.82
2251 4169 6.382869 GTAGCGTACTACTCCCTCATTTTA 57.617 41.667 0.00 0.00 44.61 1.52
2252 4170 5.517322 AGCGTACTACTCCCTCATTTTAG 57.483 43.478 0.00 0.00 0.00 1.85
2253 4171 4.954826 AGCGTACTACTCCCTCATTTTAGT 59.045 41.667 0.00 0.00 0.00 2.24
2254 4172 5.041940 GCGTACTACTCCCTCATTTTAGTG 58.958 45.833 0.00 0.00 0.00 2.74
2255 4173 5.041940 CGTACTACTCCCTCATTTTAGTGC 58.958 45.833 0.00 0.00 0.00 4.40
2256 4174 5.163540 CGTACTACTCCCTCATTTTAGTGCT 60.164 44.000 0.00 0.00 0.00 4.40
2257 4175 6.039047 CGTACTACTCCCTCATTTTAGTGCTA 59.961 42.308 0.00 0.00 0.00 3.49
2258 4176 6.472686 ACTACTCCCTCATTTTAGTGCTAG 57.527 41.667 0.00 0.00 0.00 3.42
2259 4177 6.195700 ACTACTCCCTCATTTTAGTGCTAGA 58.804 40.000 0.00 0.00 0.00 2.43
2260 4178 6.841755 ACTACTCCCTCATTTTAGTGCTAGAT 59.158 38.462 0.00 0.00 0.00 1.98
2261 4179 8.005388 ACTACTCCCTCATTTTAGTGCTAGATA 58.995 37.037 0.00 0.00 0.00 1.98
2262 4180 7.056844 ACTCCCTCATTTTAGTGCTAGATAC 57.943 40.000 0.00 0.00 0.00 2.24
2263 4181 6.611642 ACTCCCTCATTTTAGTGCTAGATACA 59.388 38.462 0.00 0.00 0.00 2.29
2264 4182 7.291182 ACTCCCTCATTTTAGTGCTAGATACAT 59.709 37.037 0.00 0.00 0.00 2.29
2265 4183 7.671302 TCCCTCATTTTAGTGCTAGATACATC 58.329 38.462 0.00 0.00 0.00 3.06
2266 4184 6.876257 CCCTCATTTTAGTGCTAGATACATCC 59.124 42.308 0.00 0.00 0.00 3.51
2267 4185 6.587990 CCTCATTTTAGTGCTAGATACATCCG 59.412 42.308 0.00 0.00 0.00 4.18
2268 4186 7.050970 TCATTTTAGTGCTAGATACATCCGT 57.949 36.000 0.00 0.00 0.00 4.69
2269 4187 8.173542 TCATTTTAGTGCTAGATACATCCGTA 57.826 34.615 0.00 0.00 0.00 4.02
2270 4188 8.803235 TCATTTTAGTGCTAGATACATCCGTAT 58.197 33.333 0.00 0.00 41.16 3.06
2286 4204 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2287 4205 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2288 4206 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2289 4207 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2290 4208 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2291 4209 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
2298 4216 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
2299 4217 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
2300 4218 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
2301 4219 9.449719 ACAAATCTAAGACAAGTAATTCGGAAT 57.550 29.630 0.00 0.00 0.00 3.01
2302 4220 9.708222 CAAATCTAAGACAAGTAATTCGGAATG 57.292 33.333 3.59 0.00 0.00 2.67
2303 4221 8.438676 AATCTAAGACAAGTAATTCGGAATGG 57.561 34.615 3.59 0.00 0.00 3.16
2304 4222 7.177832 TCTAAGACAAGTAATTCGGAATGGA 57.822 36.000 3.59 0.00 0.00 3.41
2305 4223 7.265673 TCTAAGACAAGTAATTCGGAATGGAG 58.734 38.462 3.59 0.00 0.00 3.86
2306 4224 4.770795 AGACAAGTAATTCGGAATGGAGG 58.229 43.478 3.59 0.00 0.00 4.30
2307 4225 3.877508 GACAAGTAATTCGGAATGGAGGG 59.122 47.826 3.59 0.00 0.00 4.30
2308 4226 3.521937 ACAAGTAATTCGGAATGGAGGGA 59.478 43.478 3.59 0.00 0.00 4.20
2309 4227 4.130118 CAAGTAATTCGGAATGGAGGGAG 58.870 47.826 3.59 0.00 0.00 4.30
2310 4228 3.385115 AGTAATTCGGAATGGAGGGAGT 58.615 45.455 3.59 0.00 0.00 3.85
2311 4229 4.553678 AGTAATTCGGAATGGAGGGAGTA 58.446 43.478 3.59 0.00 0.00 2.59
2312 4230 4.589374 AGTAATTCGGAATGGAGGGAGTAG 59.411 45.833 3.59 0.00 0.00 2.57
2313 4231 2.544844 TTCGGAATGGAGGGAGTAGT 57.455 50.000 0.00 0.00 0.00 2.73
2314 4232 2.544844 TCGGAATGGAGGGAGTAGTT 57.455 50.000 0.00 0.00 0.00 2.24
2315 4233 2.108168 TCGGAATGGAGGGAGTAGTTG 58.892 52.381 0.00 0.00 0.00 3.16
2316 4234 1.831736 CGGAATGGAGGGAGTAGTTGT 59.168 52.381 0.00 0.00 0.00 3.32
2317 4235 2.159085 CGGAATGGAGGGAGTAGTTGTC 60.159 54.545 0.00 0.00 0.00 3.18
2318 4236 2.838202 GGAATGGAGGGAGTAGTTGTCA 59.162 50.000 0.00 0.00 0.00 3.58
2319 4237 3.263425 GGAATGGAGGGAGTAGTTGTCAA 59.737 47.826 0.00 0.00 0.00 3.18
2320 4238 4.080299 GGAATGGAGGGAGTAGTTGTCAAT 60.080 45.833 0.00 0.00 0.00 2.57
2321 4239 5.501156 GAATGGAGGGAGTAGTTGTCAATT 58.499 41.667 0.00 0.00 0.00 2.32
2322 4240 6.352737 GGAATGGAGGGAGTAGTTGTCAATTA 60.353 42.308 0.00 0.00 0.00 1.40
2323 4241 5.677319 TGGAGGGAGTAGTTGTCAATTAG 57.323 43.478 0.00 0.00 0.00 1.73
2324 4242 5.091552 TGGAGGGAGTAGTTGTCAATTAGT 58.908 41.667 0.00 0.00 0.00 2.24
2402 4320 8.215926 TGCGCTAAACATAAATAATTGTACCT 57.784 30.769 9.73 0.00 0.00 3.08
2480 4398 3.138283 ACCTTGGATGAGACTTTGAACCA 59.862 43.478 0.00 0.00 0.00 3.67
2482 4400 4.584325 CCTTGGATGAGACTTTGAACCAAA 59.416 41.667 0.00 0.00 35.90 3.28
2533 4451 6.456718 GCTGTGTAGATTTGAGCTTCTCATTC 60.457 42.308 0.00 0.00 40.39 2.67
2544 4462 5.013568 AGCTTCTCATTCTGTCATCTGAG 57.986 43.478 0.00 0.00 37.14 3.35
2844 4789 1.064166 CCCTCCCTCTGCAATGTTCAT 60.064 52.381 0.00 0.00 0.00 2.57
2909 4854 2.509243 TGGCTTTAATCCACCCCCTAT 58.491 47.619 0.00 0.00 0.00 2.57
2996 4941 2.028020 GGAGAGAATCCCGAAGTGTTGT 60.028 50.000 0.00 0.00 43.01 3.32
3355 5361 4.732285 TCAAAATGCTTCTGACGACTTC 57.268 40.909 0.00 0.00 0.00 3.01
3438 5444 6.158695 TCCTAAATGAAGGCCTGAGTTAGATT 59.841 38.462 24.03 9.36 36.51 2.40
3536 5548 8.792633 CATCCTGAATTGGTTTTAAACTGAGTA 58.207 33.333 7.79 0.00 0.00 2.59
3562 5574 9.682465 ACCTCTTTTGAAGTAAATAATACTCCC 57.318 33.333 0.00 0.00 0.00 4.30
3563 5575 9.907229 CCTCTTTTGAAGTAAATAATACTCCCT 57.093 33.333 0.00 0.00 0.00 4.20
3565 5577 9.901172 TCTTTTGAAGTAAATAATACTCCCTCC 57.099 33.333 0.00 0.00 0.00 4.30
3566 5578 8.726870 TTTTGAAGTAAATAATACTCCCTCCG 57.273 34.615 0.00 0.00 0.00 4.63
3567 5579 7.427989 TTGAAGTAAATAATACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
3568 5580 7.427989 TGAAGTAAATAATACTCCCTCCGTT 57.572 36.000 0.00 0.00 0.00 4.44
3569 5581 7.495055 TGAAGTAAATAATACTCCCTCCGTTC 58.505 38.462 0.00 0.00 0.00 3.95
3570 5582 6.416631 AGTAAATAATACTCCCTCCGTTCC 57.583 41.667 0.00 0.00 0.00 3.62
3571 5583 6.141790 AGTAAATAATACTCCCTCCGTTCCT 58.858 40.000 0.00 0.00 0.00 3.36
3572 5584 5.970501 AAATAATACTCCCTCCGTTCCTT 57.029 39.130 0.00 0.00 0.00 3.36
3573 5585 4.957684 ATAATACTCCCTCCGTTCCTTG 57.042 45.455 0.00 0.00 0.00 3.61
3574 5586 2.544844 ATACTCCCTCCGTTCCTTGA 57.455 50.000 0.00 0.00 0.00 3.02
3575 5587 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
3576 5588 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
3577 5589 3.047695 ACTCCCTCCGTTCCTTGATAT 57.952 47.619 0.00 0.00 0.00 1.63
3578 5590 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
3579 5591 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
3580 5592 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
3581 5593 3.901844 TCCCTCCGTTCCTTGATATAAGG 59.098 47.826 0.00 0.00 38.78 2.69
3582 5594 3.646637 CCCTCCGTTCCTTGATATAAGGT 59.353 47.826 5.67 0.00 38.55 3.50
3583 5595 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
3584 5596 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
3585 5597 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
3586 5598 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
3587 5599 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
3588 5600 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
3589 5601 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
3590 5602 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
3622 5634 9.503399 AGAAAAAGTTCGAAATATAAGGTGTCT 57.497 29.630 0.00 0.00 38.90 3.41
3624 5636 9.893305 AAAAAGTTCGAAATATAAGGTGTCTTG 57.107 29.630 0.00 0.00 34.59 3.02
3625 5637 6.663944 AGTTCGAAATATAAGGTGTCTTGC 57.336 37.500 0.00 0.00 34.59 4.01
3626 5638 5.291128 AGTTCGAAATATAAGGTGTCTTGCG 59.709 40.000 0.00 0.00 34.59 4.85
3627 5639 4.751060 TCGAAATATAAGGTGTCTTGCGT 58.249 39.130 0.00 0.00 34.59 5.24
3628 5640 5.172934 TCGAAATATAAGGTGTCTTGCGTT 58.827 37.500 0.00 0.00 34.59 4.84
3629 5641 5.062934 TCGAAATATAAGGTGTCTTGCGTTG 59.937 40.000 0.00 0.00 34.59 4.10
3630 5642 4.616181 AATATAAGGTGTCTTGCGTTGC 57.384 40.909 0.00 0.00 34.59 4.17
3631 5643 1.890876 ATAAGGTGTCTTGCGTTGCA 58.109 45.000 0.00 0.00 36.47 4.08
3632 5644 0.941542 TAAGGTGTCTTGCGTTGCAC 59.058 50.000 0.00 0.00 38.71 4.57
3633 5645 2.331451 GGTGTCTTGCGTTGCACC 59.669 61.111 4.91 4.91 43.52 5.01
3634 5646 3.106552 GTGTCTTGCGTTGCACCA 58.893 55.556 0.00 0.00 38.71 4.17
3635 5647 1.298339 GTGTCTTGCGTTGCACCAC 60.298 57.895 0.00 0.00 38.71 4.16
3636 5648 1.451207 TGTCTTGCGTTGCACCACT 60.451 52.632 0.00 0.00 38.71 4.00
3637 5649 1.029408 TGTCTTGCGTTGCACCACTT 61.029 50.000 0.00 0.00 38.71 3.16
3638 5650 0.592247 GTCTTGCGTTGCACCACTTG 60.592 55.000 0.00 0.00 38.71 3.16
3639 5651 1.029408 TCTTGCGTTGCACCACTTGT 61.029 50.000 0.00 0.00 38.71 3.16
3640 5652 0.179140 CTTGCGTTGCACCACTTGTT 60.179 50.000 0.00 0.00 38.71 2.83
3641 5653 0.244994 TTGCGTTGCACCACTTGTTT 59.755 45.000 0.00 0.00 38.71 2.83
3642 5654 0.457509 TGCGTTGCACCACTTGTTTG 60.458 50.000 0.00 0.00 31.71 2.93
3643 5655 0.179150 GCGTTGCACCACTTGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
3644 5656 1.734047 GCGTTGCACCACTTGTTTGAA 60.734 47.619 0.00 0.00 0.00 2.69
3645 5657 2.808244 CGTTGCACCACTTGTTTGAAT 58.192 42.857 0.00 0.00 0.00 2.57
3646 5658 3.793801 GCGTTGCACCACTTGTTTGAATA 60.794 43.478 0.00 0.00 0.00 1.75
3647 5659 4.545610 CGTTGCACCACTTGTTTGAATAT 58.454 39.130 0.00 0.00 0.00 1.28
3648 5660 4.981674 CGTTGCACCACTTGTTTGAATATT 59.018 37.500 0.00 0.00 0.00 1.28
3649 5661 5.461737 CGTTGCACCACTTGTTTGAATATTT 59.538 36.000 0.00 0.00 0.00 1.40
3650 5662 6.019156 CGTTGCACCACTTGTTTGAATATTTT 60.019 34.615 0.00 0.00 0.00 1.82
3651 5663 7.465245 CGTTGCACCACTTGTTTGAATATTTTT 60.465 33.333 0.00 0.00 0.00 1.94
3703 5715 9.785982 ATATTAGGCAAACTCCTCTATTTTCTC 57.214 33.333 0.00 0.00 37.66 2.87
3704 5716 5.505181 AGGCAAACTCCTCTATTTTCTCA 57.495 39.130 0.00 0.00 0.00 3.27
3705 5717 6.072199 AGGCAAACTCCTCTATTTTCTCAT 57.928 37.500 0.00 0.00 0.00 2.90
3706 5718 5.884792 AGGCAAACTCCTCTATTTTCTCATG 59.115 40.000 0.00 0.00 0.00 3.07
3707 5719 5.649831 GGCAAACTCCTCTATTTTCTCATGT 59.350 40.000 0.00 0.00 0.00 3.21
3708 5720 6.183360 GGCAAACTCCTCTATTTTCTCATGTC 60.183 42.308 0.00 0.00 0.00 3.06
3709 5721 6.372659 GCAAACTCCTCTATTTTCTCATGTCA 59.627 38.462 0.00 0.00 0.00 3.58
3710 5722 7.094634 GCAAACTCCTCTATTTTCTCATGTCAA 60.095 37.037 0.00 0.00 0.00 3.18
3711 5723 8.954350 CAAACTCCTCTATTTTCTCATGTCAAT 58.046 33.333 0.00 0.00 0.00 2.57
3712 5724 9.525826 AAACTCCTCTATTTTCTCATGTCAATT 57.474 29.630 0.00 0.00 0.00 2.32
3714 5726 9.829507 ACTCCTCTATTTTCTCATGTCAATTAG 57.170 33.333 0.00 0.00 0.00 1.73
3715 5727 9.829507 CTCCTCTATTTTCTCATGTCAATTAGT 57.170 33.333 0.00 0.00 0.00 2.24
3716 5728 9.823647 TCCTCTATTTTCTCATGTCAATTAGTC 57.176 33.333 0.00 0.00 0.00 2.59
3717 5729 9.605275 CCTCTATTTTCTCATGTCAATTAGTCA 57.395 33.333 0.00 0.00 0.00 3.41
3719 5731 9.605275 TCTATTTTCTCATGTCAATTAGTCAGG 57.395 33.333 0.00 0.00 0.00 3.86
3720 5732 9.388506 CTATTTTCTCATGTCAATTAGTCAGGT 57.611 33.333 0.00 0.00 0.00 4.00
3721 5733 7.439157 TTTTCTCATGTCAATTAGTCAGGTG 57.561 36.000 0.00 0.00 0.00 4.00
3722 5734 5.745312 TCTCATGTCAATTAGTCAGGTGT 57.255 39.130 0.00 0.00 0.00 4.16
3723 5735 6.850752 TCTCATGTCAATTAGTCAGGTGTA 57.149 37.500 0.00 0.00 0.00 2.90
3724 5736 7.239763 TCTCATGTCAATTAGTCAGGTGTAA 57.760 36.000 0.00 0.00 0.00 2.41
3725 5737 7.851228 TCTCATGTCAATTAGTCAGGTGTAAT 58.149 34.615 0.00 0.00 0.00 1.89
3726 5738 7.981789 TCTCATGTCAATTAGTCAGGTGTAATC 59.018 37.037 0.00 0.00 0.00 1.75
3727 5739 7.851228 TCATGTCAATTAGTCAGGTGTAATCT 58.149 34.615 0.00 0.00 0.00 2.40
3728 5740 7.981789 TCATGTCAATTAGTCAGGTGTAATCTC 59.018 37.037 0.00 0.00 0.00 2.75
3729 5741 6.330278 TGTCAATTAGTCAGGTGTAATCTCG 58.670 40.000 0.00 0.00 0.00 4.04
3730 5742 5.232414 GTCAATTAGTCAGGTGTAATCTCGC 59.768 44.000 0.00 0.00 0.00 5.03
3731 5743 3.795623 TTAGTCAGGTGTAATCTCGCC 57.204 47.619 0.00 0.00 38.17 5.54
3732 5744 0.824759 AGTCAGGTGTAATCTCGCCC 59.175 55.000 0.00 0.00 38.61 6.13
3733 5745 0.535335 GTCAGGTGTAATCTCGCCCA 59.465 55.000 0.00 0.00 38.61 5.36
3734 5746 1.066430 GTCAGGTGTAATCTCGCCCAA 60.066 52.381 0.00 0.00 38.61 4.12
3735 5747 1.626321 TCAGGTGTAATCTCGCCCAAA 59.374 47.619 0.00 0.00 38.61 3.28
3736 5748 2.039216 TCAGGTGTAATCTCGCCCAAAA 59.961 45.455 0.00 0.00 38.61 2.44
3737 5749 2.161609 CAGGTGTAATCTCGCCCAAAAC 59.838 50.000 0.00 0.00 38.61 2.43
3738 5750 2.039879 AGGTGTAATCTCGCCCAAAACT 59.960 45.455 0.00 0.00 38.61 2.66
3739 5751 2.817844 GGTGTAATCTCGCCCAAAACTT 59.182 45.455 0.00 0.00 32.43 2.66
3740 5752 3.365969 GGTGTAATCTCGCCCAAAACTTG 60.366 47.826 0.00 0.00 32.43 3.16
3741 5753 3.252458 GTGTAATCTCGCCCAAAACTTGT 59.748 43.478 0.00 0.00 0.00 3.16
3742 5754 3.252215 TGTAATCTCGCCCAAAACTTGTG 59.748 43.478 0.00 0.00 0.00 3.33
3743 5755 2.270352 ATCTCGCCCAAAACTTGTGA 57.730 45.000 0.00 0.00 0.00 3.58
3744 5756 2.045561 TCTCGCCCAAAACTTGTGAA 57.954 45.000 0.00 0.00 0.00 3.18
3745 5757 2.370349 TCTCGCCCAAAACTTGTGAAA 58.630 42.857 0.00 0.00 0.00 2.69
3746 5758 2.955660 TCTCGCCCAAAACTTGTGAAAT 59.044 40.909 0.00 0.00 0.00 2.17
3747 5759 3.383185 TCTCGCCCAAAACTTGTGAAATT 59.617 39.130 0.00 0.00 0.00 1.82
3748 5760 4.119136 CTCGCCCAAAACTTGTGAAATTT 58.881 39.130 0.00 0.00 0.00 1.82
3749 5761 4.508662 TCGCCCAAAACTTGTGAAATTTT 58.491 34.783 0.00 0.00 0.00 1.82
3750 5762 4.568760 TCGCCCAAAACTTGTGAAATTTTC 59.431 37.500 2.05 2.05 0.00 2.29
3751 5763 4.331168 CGCCCAAAACTTGTGAAATTTTCA 59.669 37.500 7.74 7.74 37.33 2.69
3761 5773 3.347958 TGAAATTTTCACTCCACGTGC 57.652 42.857 10.91 0.00 43.46 5.34
3762 5774 2.286713 TGAAATTTTCACTCCACGTGCG 60.287 45.455 10.91 5.74 43.46 5.34
3763 5775 1.305201 AATTTTCACTCCACGTGCGT 58.695 45.000 10.91 6.46 43.46 5.24
3764 5776 1.305201 ATTTTCACTCCACGTGCGTT 58.695 45.000 10.91 0.00 43.46 4.84
3765 5777 0.653636 TTTTCACTCCACGTGCGTTC 59.346 50.000 10.91 0.00 43.46 3.95
3766 5778 0.179094 TTTCACTCCACGTGCGTTCT 60.179 50.000 10.91 0.00 43.46 3.01
3767 5779 0.179094 TTCACTCCACGTGCGTTCTT 60.179 50.000 10.91 0.00 43.46 2.52
3768 5780 0.179094 TCACTCCACGTGCGTTCTTT 60.179 50.000 10.91 0.00 43.46 2.52
3769 5781 1.067364 TCACTCCACGTGCGTTCTTTA 59.933 47.619 10.91 0.00 43.46 1.85
3770 5782 1.862201 CACTCCACGTGCGTTCTTTAA 59.138 47.619 10.91 0.00 36.72 1.52
3771 5783 2.478894 CACTCCACGTGCGTTCTTTAAT 59.521 45.455 10.91 0.00 36.72 1.40
3772 5784 3.059188 CACTCCACGTGCGTTCTTTAATT 60.059 43.478 10.91 0.00 36.72 1.40
3773 5785 3.562557 ACTCCACGTGCGTTCTTTAATTT 59.437 39.130 10.91 0.00 0.00 1.82
3774 5786 4.035909 ACTCCACGTGCGTTCTTTAATTTT 59.964 37.500 10.91 0.00 0.00 1.82
3775 5787 4.529446 TCCACGTGCGTTCTTTAATTTTC 58.471 39.130 10.91 0.00 0.00 2.29
3776 5788 3.356658 CCACGTGCGTTCTTTAATTTTCG 59.643 43.478 10.91 0.00 0.00 3.46
3777 5789 3.963724 CACGTGCGTTCTTTAATTTTCGT 59.036 39.130 0.82 0.00 0.00 3.85
3778 5790 3.963724 ACGTGCGTTCTTTAATTTTCGTG 59.036 39.130 0.00 0.00 0.00 4.35
3779 5791 3.181567 CGTGCGTTCTTTAATTTTCGTGC 60.182 43.478 0.00 0.00 0.00 5.34
3780 5792 3.118972 GTGCGTTCTTTAATTTTCGTGCC 59.881 43.478 0.00 0.00 0.00 5.01
3781 5793 3.243101 TGCGTTCTTTAATTTTCGTGCCA 60.243 39.130 0.00 0.00 0.00 4.92
3782 5794 3.731717 GCGTTCTTTAATTTTCGTGCCAA 59.268 39.130 0.00 0.00 0.00 4.52
3783 5795 4.207429 GCGTTCTTTAATTTTCGTGCCAAA 59.793 37.500 0.00 0.00 0.00 3.28
3784 5796 5.276442 GCGTTCTTTAATTTTCGTGCCAAAA 60.276 36.000 0.00 0.00 0.00 2.44
3785 5797 6.697152 CGTTCTTTAATTTTCGTGCCAAAAA 58.303 32.000 0.00 0.00 0.00 1.94
3786 5798 6.621794 CGTTCTTTAATTTTCGTGCCAAAAAC 59.378 34.615 0.00 0.00 0.00 2.43
3787 5799 7.463515 CGTTCTTTAATTTTCGTGCCAAAAACT 60.464 33.333 0.00 0.00 0.00 2.66
3788 5800 8.809478 GTTCTTTAATTTTCGTGCCAAAAACTA 58.191 29.630 0.00 0.00 0.00 2.24
3789 5801 9.535878 TTCTTTAATTTTCGTGCCAAAAACTAT 57.464 25.926 0.00 0.00 0.00 2.12
3792 5804 9.745880 TTTAATTTTCGTGCCAAAAACTATACA 57.254 25.926 0.00 0.00 0.00 2.29
3793 5805 7.631915 AATTTTCGTGCCAAAAACTATACAC 57.368 32.000 0.00 0.00 0.00 2.90
3794 5806 4.752661 TTCGTGCCAAAAACTATACACC 57.247 40.909 0.00 0.00 0.00 4.16
3795 5807 3.075884 TCGTGCCAAAAACTATACACCC 58.924 45.455 0.00 0.00 0.00 4.61
3796 5808 3.078837 CGTGCCAAAAACTATACACCCT 58.921 45.455 0.00 0.00 0.00 4.34
3797 5809 4.020396 TCGTGCCAAAAACTATACACCCTA 60.020 41.667 0.00 0.00 0.00 3.53
3798 5810 4.879545 CGTGCCAAAAACTATACACCCTAT 59.120 41.667 0.00 0.00 0.00 2.57
3799 5811 6.050432 CGTGCCAAAAACTATACACCCTATA 58.950 40.000 0.00 0.00 0.00 1.31
3800 5812 6.708949 CGTGCCAAAAACTATACACCCTATAT 59.291 38.462 0.00 0.00 0.00 0.86
3801 5813 7.227910 CGTGCCAAAAACTATACACCCTATATT 59.772 37.037 0.00 0.00 0.00 1.28
3802 5814 8.909923 GTGCCAAAAACTATACACCCTATATTT 58.090 33.333 0.00 0.00 0.00 1.40
3979 5991 4.454504 CCTTGTTTACGGCACATACTTCTT 59.545 41.667 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.886446 CCAACTTATAAGTCCAAAGTCCCTAAA 59.114 37.037 18.28 0.00 38.57 1.85
4 5 4.948004 CCCAACTTATAAGTCCAAAGTCCC 59.052 45.833 18.28 0.00 38.57 4.46
5 6 4.948004 CCCCAACTTATAAGTCCAAAGTCC 59.052 45.833 18.28 0.00 38.57 3.85
6 7 4.398358 GCCCCAACTTATAAGTCCAAAGTC 59.602 45.833 18.28 2.37 38.57 3.01
7 8 4.044191 AGCCCCAACTTATAAGTCCAAAGT 59.956 41.667 18.28 0.00 38.57 2.66
8 9 4.600062 AGCCCCAACTTATAAGTCCAAAG 58.400 43.478 18.28 8.10 38.57 2.77
9 10 4.668138 AGCCCCAACTTATAAGTCCAAA 57.332 40.909 18.28 0.00 38.57 3.28
10 11 5.782677 TTAGCCCCAACTTATAAGTCCAA 57.217 39.130 18.28 0.00 38.57 3.53
11 12 5.782677 TTTAGCCCCAACTTATAAGTCCA 57.217 39.130 18.28 0.00 38.57 4.02
32 33 8.934023 TGGTTCATAAGTTCTAGGACATTTTT 57.066 30.769 3.42 0.00 0.00 1.94
33 34 8.934023 TTGGTTCATAAGTTCTAGGACATTTT 57.066 30.769 3.42 0.00 0.00 1.82
34 35 9.178758 GATTGGTTCATAAGTTCTAGGACATTT 57.821 33.333 3.42 0.00 0.00 2.32
35 36 8.328758 TGATTGGTTCATAAGTTCTAGGACATT 58.671 33.333 3.42 0.00 0.00 2.71
36 37 7.861629 TGATTGGTTCATAAGTTCTAGGACAT 58.138 34.615 3.42 0.00 0.00 3.06
37 38 7.252612 TGATTGGTTCATAAGTTCTAGGACA 57.747 36.000 3.42 0.00 0.00 4.02
38 39 6.763610 CCTGATTGGTTCATAAGTTCTAGGAC 59.236 42.308 0.00 0.00 32.72 3.85
39 40 6.126768 CCCTGATTGGTTCATAAGTTCTAGGA 60.127 42.308 0.00 0.00 32.72 2.94
40 41 6.058183 CCCTGATTGGTTCATAAGTTCTAGG 58.942 44.000 0.00 0.00 32.72 3.02
41 42 5.529060 GCCCTGATTGGTTCATAAGTTCTAG 59.471 44.000 0.00 0.00 32.72 2.43
42 43 5.191722 AGCCCTGATTGGTTCATAAGTTCTA 59.808 40.000 0.00 0.00 32.72 2.10
43 44 4.018050 AGCCCTGATTGGTTCATAAGTTCT 60.018 41.667 0.00 0.00 32.72 3.01
44 45 4.273318 AGCCCTGATTGGTTCATAAGTTC 58.727 43.478 0.00 0.00 32.72 3.01
45 46 4.322057 AGCCCTGATTGGTTCATAAGTT 57.678 40.909 0.00 0.00 32.72 2.66
46 47 4.322057 AAGCCCTGATTGGTTCATAAGT 57.678 40.909 0.00 0.00 32.72 2.24
47 48 6.405842 GGTTAAAGCCCTGATTGGTTCATAAG 60.406 42.308 0.00 0.00 32.72 1.73
48 49 5.420739 GGTTAAAGCCCTGATTGGTTCATAA 59.579 40.000 0.00 0.00 32.72 1.90
49 50 4.953579 GGTTAAAGCCCTGATTGGTTCATA 59.046 41.667 0.00 0.00 32.72 2.15
50 51 3.769300 GGTTAAAGCCCTGATTGGTTCAT 59.231 43.478 0.00 0.00 32.72 2.57
51 52 3.161866 GGTTAAAGCCCTGATTGGTTCA 58.838 45.455 0.00 0.00 0.00 3.18
52 53 3.161866 TGGTTAAAGCCCTGATTGGTTC 58.838 45.455 0.00 0.00 0.00 3.62
53 54 3.252554 TGGTTAAAGCCCTGATTGGTT 57.747 42.857 0.00 0.00 0.00 3.67
54 55 2.990740 TGGTTAAAGCCCTGATTGGT 57.009 45.000 0.00 0.00 0.00 3.67
55 56 2.431782 CCATGGTTAAAGCCCTGATTGG 59.568 50.000 2.57 0.00 0.00 3.16
56 57 3.364549 TCCATGGTTAAAGCCCTGATTG 58.635 45.455 12.58 0.00 0.00 2.67
57 58 3.756082 TCCATGGTTAAAGCCCTGATT 57.244 42.857 12.58 0.00 0.00 2.57
58 59 3.979501 ATCCATGGTTAAAGCCCTGAT 57.020 42.857 12.58 0.00 0.00 2.90
59 60 3.756082 AATCCATGGTTAAAGCCCTGA 57.244 42.857 12.58 0.00 0.00 3.86
60 61 6.209391 CCTATAAATCCATGGTTAAAGCCCTG 59.791 42.308 12.58 0.00 0.00 4.45
61 62 6.125890 ACCTATAAATCCATGGTTAAAGCCCT 60.126 38.462 12.58 0.00 0.00 5.19
62 63 6.015434 CACCTATAAATCCATGGTTAAAGCCC 60.015 42.308 12.58 0.00 0.00 5.19
63 64 6.516693 GCACCTATAAATCCATGGTTAAAGCC 60.517 42.308 12.58 0.00 0.00 4.35
64 65 6.265422 AGCACCTATAAATCCATGGTTAAAGC 59.735 38.462 12.58 5.78 0.00 3.51
65 66 7.823745 AGCACCTATAAATCCATGGTTAAAG 57.176 36.000 12.58 3.38 0.00 1.85
66 67 9.127277 GTTAGCACCTATAAATCCATGGTTAAA 57.873 33.333 12.58 0.00 0.00 1.52
67 68 8.275758 TGTTAGCACCTATAAATCCATGGTTAA 58.724 33.333 12.58 0.00 0.00 2.01
68 69 7.807198 TGTTAGCACCTATAAATCCATGGTTA 58.193 34.615 12.58 4.33 0.00 2.85
69 70 6.668645 TGTTAGCACCTATAAATCCATGGTT 58.331 36.000 12.58 0.00 0.00 3.67
70 71 6.260700 TGTTAGCACCTATAAATCCATGGT 57.739 37.500 12.58 0.00 0.00 3.55
71 72 7.448161 TGAATGTTAGCACCTATAAATCCATGG 59.552 37.037 4.97 4.97 0.00 3.66
72 73 8.394971 TGAATGTTAGCACCTATAAATCCATG 57.605 34.615 0.00 0.00 0.00 3.66
73 74 8.220559 ACTGAATGTTAGCACCTATAAATCCAT 58.779 33.333 0.00 0.00 0.00 3.41
74 75 7.573710 ACTGAATGTTAGCACCTATAAATCCA 58.426 34.615 0.00 0.00 0.00 3.41
75 76 7.173390 GGACTGAATGTTAGCACCTATAAATCC 59.827 40.741 0.00 0.00 0.00 3.01
76 77 7.715249 TGGACTGAATGTTAGCACCTATAAATC 59.285 37.037 0.00 0.00 0.00 2.17
77 78 7.573710 TGGACTGAATGTTAGCACCTATAAAT 58.426 34.615 0.00 0.00 0.00 1.40
78 79 6.953101 TGGACTGAATGTTAGCACCTATAAA 58.047 36.000 0.00 0.00 0.00 1.40
79 80 6.156256 ACTGGACTGAATGTTAGCACCTATAA 59.844 38.462 0.00 0.00 0.00 0.98
80 81 5.661312 ACTGGACTGAATGTTAGCACCTATA 59.339 40.000 0.00 0.00 0.00 1.31
81 82 4.471386 ACTGGACTGAATGTTAGCACCTAT 59.529 41.667 0.00 0.00 0.00 2.57
82 83 3.838317 ACTGGACTGAATGTTAGCACCTA 59.162 43.478 0.00 0.00 0.00 3.08
83 84 2.639839 ACTGGACTGAATGTTAGCACCT 59.360 45.455 0.00 0.00 0.00 4.00
84 85 3.059352 ACTGGACTGAATGTTAGCACC 57.941 47.619 0.00 0.00 0.00 5.01
85 86 5.215160 CAAAACTGGACTGAATGTTAGCAC 58.785 41.667 0.00 0.00 0.00 4.40
89 90 5.055265 TCCCAAAACTGGACTGAATGTTA 57.945 39.130 0.00 0.00 0.00 2.41
165 166 2.124693 GCTAGCTCGCTCTGGGAGT 61.125 63.158 7.70 3.74 43.22 3.85
357 358 0.037303 ACTGTCTGGCTTCACATGGG 59.963 55.000 0.00 0.00 0.00 4.00
543 2384 0.324552 TACTACCGGGTTAGCAGCCA 60.325 55.000 4.31 0.00 41.12 4.75
551 2392 2.456073 ATCTCTGCTACTACCGGGTT 57.544 50.000 4.31 0.00 0.00 4.11
617 2458 0.251354 AGCTCGACGTGTACCCTCTA 59.749 55.000 0.00 0.00 0.00 2.43
670 2513 2.636893 AGCAGACATGTTCTTCTCTGGT 59.363 45.455 0.00 4.25 36.81 4.00
804 2649 6.743788 ACCTTACATAGTTCTTCTCCTACCT 58.256 40.000 0.00 0.00 0.00 3.08
921 2790 6.418057 TTGGTTAAGTGCATGGATTTTTCT 57.582 33.333 0.00 0.00 0.00 2.52
922 2791 6.481644 TGTTTGGTTAAGTGCATGGATTTTTC 59.518 34.615 0.00 0.00 0.00 2.29
924 2793 5.757808 GTGTTTGGTTAAGTGCATGGATTTT 59.242 36.000 0.00 0.00 0.00 1.82
1352 3253 2.990395 TACAGCCGGCGGTACACA 60.990 61.111 31.76 15.26 0.00 3.72
1808 3714 3.857383 GCCACCTGCATACTAGTATGTCG 60.857 52.174 33.06 25.41 43.57 4.35
1882 3788 4.112634 TGCCTTAGTCTTGACCCAAAAT 57.887 40.909 0.00 0.00 0.00 1.82
1909 3816 9.231297 TCTGGAAAGATAAATGTGTTTTAGGAG 57.769 33.333 0.00 0.00 33.40 3.69
2027 3934 6.796785 TGATTCCTGTCATTCATCTCACTA 57.203 37.500 0.00 0.00 0.00 2.74
2186 4104 5.763698 ACGTGCTATAGTAGATAGAACAGCA 59.236 40.000 0.84 0.00 35.55 4.41
2187 4105 6.081049 CACGTGCTATAGTAGATAGAACAGC 58.919 44.000 0.82 0.00 31.10 4.40
2188 4106 7.192148 ACACGTGCTATAGTAGATAGAACAG 57.808 40.000 17.22 0.00 31.10 3.16
2189 4107 7.095313 GCTACACGTGCTATAGTAGATAGAACA 60.095 40.741 17.22 0.00 36.86 3.18
2190 4108 7.235777 GCTACACGTGCTATAGTAGATAGAAC 58.764 42.308 17.22 0.00 36.86 3.01
2191 4109 6.090493 CGCTACACGTGCTATAGTAGATAGAA 59.910 42.308 17.22 0.00 36.86 2.10
2192 4110 5.575995 CGCTACACGTGCTATAGTAGATAGA 59.424 44.000 17.22 0.00 36.86 1.98
2193 4111 5.787429 CGCTACACGTGCTATAGTAGATAG 58.213 45.833 17.22 6.80 36.86 2.08
2194 4112 5.774878 CGCTACACGTGCTATAGTAGATA 57.225 43.478 17.22 0.00 36.86 1.98
2195 4113 4.665281 CGCTACACGTGCTATAGTAGAT 57.335 45.455 17.22 0.00 36.86 1.98
2211 4129 3.850657 CTACACGGAGTAGTACGCTAC 57.149 52.381 0.91 0.00 44.24 3.58
2228 4146 4.915158 AAATGAGGGAGTAGTACGCTAC 57.085 45.455 3.96 0.00 45.96 3.58
2229 4147 6.039047 CACTAAAATGAGGGAGTAGTACGCTA 59.961 42.308 3.96 0.00 0.00 4.26
2230 4148 4.954826 ACTAAAATGAGGGAGTAGTACGCT 59.045 41.667 3.96 0.00 0.00 5.07
2231 4149 5.041940 CACTAAAATGAGGGAGTAGTACGC 58.958 45.833 0.00 0.00 0.00 4.42
2232 4150 5.041940 GCACTAAAATGAGGGAGTAGTACG 58.958 45.833 0.00 0.00 0.00 3.67
2233 4151 6.223351 AGCACTAAAATGAGGGAGTAGTAC 57.777 41.667 0.00 0.00 0.00 2.73
2234 4152 7.351952 TCTAGCACTAAAATGAGGGAGTAGTA 58.648 38.462 0.00 0.00 0.00 1.82
2235 4153 6.195700 TCTAGCACTAAAATGAGGGAGTAGT 58.804 40.000 0.00 0.00 0.00 2.73
2236 4154 6.716934 TCTAGCACTAAAATGAGGGAGTAG 57.283 41.667 0.00 0.00 0.00 2.57
2237 4155 7.783119 TGTATCTAGCACTAAAATGAGGGAGTA 59.217 37.037 0.00 0.00 0.00 2.59
2238 4156 6.611642 TGTATCTAGCACTAAAATGAGGGAGT 59.388 38.462 0.00 0.00 0.00 3.85
2239 4157 7.055667 TGTATCTAGCACTAAAATGAGGGAG 57.944 40.000 0.00 0.00 0.00 4.30
2240 4158 7.256332 GGATGTATCTAGCACTAAAATGAGGGA 60.256 40.741 0.00 0.00 0.00 4.20
2241 4159 6.876257 GGATGTATCTAGCACTAAAATGAGGG 59.124 42.308 0.00 0.00 0.00 4.30
2242 4160 6.587990 CGGATGTATCTAGCACTAAAATGAGG 59.412 42.308 0.00 0.00 0.00 3.86
2243 4161 7.148641 ACGGATGTATCTAGCACTAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
2244 4162 7.050970 ACGGATGTATCTAGCACTAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
2245 4163 8.988064 ATACGGATGTATCTAGCACTAAAATG 57.012 34.615 0.00 0.00 36.56 2.32
2260 4178 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
2261 4179 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2262 4180 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2263 4181 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2264 4182 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2265 4183 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
2272 4190 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
2273 4191 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
2274 4192 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
2275 4193 8.842358 TTCCGAATTACTTGTCTTAGATTTGT 57.158 30.769 0.00 0.00 0.00 2.83
2276 4194 9.708222 CATTCCGAATTACTTGTCTTAGATTTG 57.292 33.333 0.00 0.00 0.00 2.32
2277 4195 8.893727 CCATTCCGAATTACTTGTCTTAGATTT 58.106 33.333 0.00 0.00 0.00 2.17
2278 4196 8.265055 TCCATTCCGAATTACTTGTCTTAGATT 58.735 33.333 0.00 0.00 0.00 2.40
2279 4197 7.792032 TCCATTCCGAATTACTTGTCTTAGAT 58.208 34.615 0.00 0.00 0.00 1.98
2280 4198 7.177832 TCCATTCCGAATTACTTGTCTTAGA 57.822 36.000 0.00 0.00 0.00 2.10
2281 4199 6.480320 CCTCCATTCCGAATTACTTGTCTTAG 59.520 42.308 0.00 0.00 0.00 2.18
2282 4200 6.346096 CCTCCATTCCGAATTACTTGTCTTA 58.654 40.000 0.00 0.00 0.00 2.10
2283 4201 5.186198 CCTCCATTCCGAATTACTTGTCTT 58.814 41.667 0.00 0.00 0.00 3.01
2284 4202 4.384208 CCCTCCATTCCGAATTACTTGTCT 60.384 45.833 0.00 0.00 0.00 3.41
2285 4203 3.877508 CCCTCCATTCCGAATTACTTGTC 59.122 47.826 0.00 0.00 0.00 3.18
2286 4204 3.521937 TCCCTCCATTCCGAATTACTTGT 59.478 43.478 0.00 0.00 0.00 3.16
2287 4205 4.130118 CTCCCTCCATTCCGAATTACTTG 58.870 47.826 0.00 0.00 0.00 3.16
2288 4206 3.780850 ACTCCCTCCATTCCGAATTACTT 59.219 43.478 0.00 0.00 0.00 2.24
2289 4207 3.385115 ACTCCCTCCATTCCGAATTACT 58.615 45.455 0.00 0.00 0.00 2.24
2290 4208 3.840124 ACTCCCTCCATTCCGAATTAC 57.160 47.619 0.00 0.00 0.00 1.89
2291 4209 4.553678 ACTACTCCCTCCATTCCGAATTA 58.446 43.478 0.00 0.00 0.00 1.40
2292 4210 3.385115 ACTACTCCCTCCATTCCGAATT 58.615 45.455 0.00 0.00 0.00 2.17
2293 4211 3.047695 ACTACTCCCTCCATTCCGAAT 57.952 47.619 0.00 0.00 0.00 3.34
2294 4212 2.500098 CAACTACTCCCTCCATTCCGAA 59.500 50.000 0.00 0.00 0.00 4.30
2295 4213 2.108168 CAACTACTCCCTCCATTCCGA 58.892 52.381 0.00 0.00 0.00 4.55
2296 4214 1.831736 ACAACTACTCCCTCCATTCCG 59.168 52.381 0.00 0.00 0.00 4.30
2297 4215 2.838202 TGACAACTACTCCCTCCATTCC 59.162 50.000 0.00 0.00 0.00 3.01
2298 4216 4.553330 TTGACAACTACTCCCTCCATTC 57.447 45.455 0.00 0.00 0.00 2.67
2299 4217 5.520748 AATTGACAACTACTCCCTCCATT 57.479 39.130 0.00 0.00 0.00 3.16
2300 4218 5.726793 ACTAATTGACAACTACTCCCTCCAT 59.273 40.000 0.00 0.00 0.00 3.41
2301 4219 5.046591 CACTAATTGACAACTACTCCCTCCA 60.047 44.000 0.00 0.00 0.00 3.86
2302 4220 5.046520 ACACTAATTGACAACTACTCCCTCC 60.047 44.000 0.00 0.00 0.00 4.30
2303 4221 5.869888 CACACTAATTGACAACTACTCCCTC 59.130 44.000 0.00 0.00 0.00 4.30
2304 4222 5.794894 CACACTAATTGACAACTACTCCCT 58.205 41.667 0.00 0.00 0.00 4.20
2305 4223 4.392138 GCACACTAATTGACAACTACTCCC 59.608 45.833 0.00 0.00 0.00 4.30
2306 4224 4.392138 GGCACACTAATTGACAACTACTCC 59.608 45.833 0.00 0.00 0.00 3.85
2307 4225 4.091509 CGGCACACTAATTGACAACTACTC 59.908 45.833 0.00 0.00 0.00 2.59
2308 4226 3.994392 CGGCACACTAATTGACAACTACT 59.006 43.478 0.00 0.00 0.00 2.57
2309 4227 3.744426 ACGGCACACTAATTGACAACTAC 59.256 43.478 0.00 0.00 0.00 2.73
2310 4228 3.997762 ACGGCACACTAATTGACAACTA 58.002 40.909 0.00 0.00 0.00 2.24
2311 4229 2.846193 ACGGCACACTAATTGACAACT 58.154 42.857 0.00 0.00 0.00 3.16
2312 4230 3.250040 AGAACGGCACACTAATTGACAAC 59.750 43.478 0.00 0.00 0.00 3.32
2313 4231 3.472652 AGAACGGCACACTAATTGACAA 58.527 40.909 0.00 0.00 0.00 3.18
2314 4232 3.120321 AGAACGGCACACTAATTGACA 57.880 42.857 0.00 0.00 0.00 3.58
2315 4233 5.109903 AGATAGAACGGCACACTAATTGAC 58.890 41.667 0.00 0.00 0.00 3.18
2316 4234 5.339008 AGATAGAACGGCACACTAATTGA 57.661 39.130 0.00 0.00 0.00 2.57
2317 4235 6.273825 AGTAGATAGAACGGCACACTAATTG 58.726 40.000 0.00 0.00 0.00 2.32
2318 4236 6.466885 AGTAGATAGAACGGCACACTAATT 57.533 37.500 0.00 0.00 0.00 1.40
2319 4237 7.762588 ATAGTAGATAGAACGGCACACTAAT 57.237 36.000 0.00 0.00 0.00 1.73
2320 4238 7.389884 CCTATAGTAGATAGAACGGCACACTAA 59.610 40.741 0.00 0.00 0.00 2.24
2321 4239 6.877855 CCTATAGTAGATAGAACGGCACACTA 59.122 42.308 0.00 0.00 0.00 2.74
2322 4240 5.706369 CCTATAGTAGATAGAACGGCACACT 59.294 44.000 0.00 0.00 0.00 3.55
2323 4241 5.472820 ACCTATAGTAGATAGAACGGCACAC 59.527 44.000 0.00 0.00 0.00 3.82
2324 4242 5.628130 ACCTATAGTAGATAGAACGGCACA 58.372 41.667 0.00 0.00 0.00 4.57
2365 4283 2.427095 GTTTAGCGCAGATTGGGGATTT 59.573 45.455 11.47 0.00 0.00 2.17
2366 4284 2.024414 GTTTAGCGCAGATTGGGGATT 58.976 47.619 11.47 0.00 0.00 3.01
2367 4285 1.064758 TGTTTAGCGCAGATTGGGGAT 60.065 47.619 11.47 0.00 0.00 3.85
2402 4320 5.066764 GCATTGCGGTAAAACCCTAATTCTA 59.933 40.000 0.00 0.00 33.75 2.10
2544 4462 6.603095 ACTCGAAGCATAAACATTTCTGTTC 58.397 36.000 0.00 0.00 44.83 3.18
2627 4545 9.921637 AAAAACTACAAACACTTGAATTTCAGA 57.078 25.926 0.00 0.00 36.33 3.27
2628 4546 9.956797 CAAAAACTACAAACACTTGAATTTCAG 57.043 29.630 0.00 0.00 36.33 3.02
2629 4547 8.439286 GCAAAAACTACAAACACTTGAATTTCA 58.561 29.630 0.00 0.00 36.33 2.69
2630 4548 8.655970 AGCAAAAACTACAAACACTTGAATTTC 58.344 29.630 0.00 0.00 36.33 2.17
2631 4549 8.442384 CAGCAAAAACTACAAACACTTGAATTT 58.558 29.630 0.00 0.00 36.33 1.82
2648 4590 1.952193 ACATTGGTGGCAGCAAAAAC 58.048 45.000 32.59 0.00 39.20 2.43
2844 4789 6.889301 ATGTTCTTCTGAGATCTTTGCAAA 57.111 33.333 12.14 12.14 0.00 3.68
2909 4854 0.327867 ATCTGGGGAGATCTGGCCAA 60.328 55.000 7.01 0.00 0.00 4.52
2996 4941 0.258774 GGGGCATTTCTTCCCTGCTA 59.741 55.000 0.00 0.00 42.25 3.49
3349 5355 0.445436 GCAGCATGTTCAGGAAGTCG 59.555 55.000 0.00 0.00 39.31 4.18
3355 5361 1.134367 CAATCCTGCAGCATGTTCAGG 59.866 52.381 8.66 18.10 44.65 3.86
3373 5379 9.598517 GAAGATGAATAAAATTAACCATGGCAA 57.401 29.630 13.04 6.76 0.00 4.52
3438 5444 1.612199 GGCAATGAACCGACCCAGTAA 60.612 52.381 0.00 0.00 0.00 2.24
3536 5548 9.682465 GGGAGTATTATTTACTTCAAAAGAGGT 57.318 33.333 0.00 0.00 0.00 3.85
3558 5570 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
3559 5571 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
3560 5572 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
3561 5573 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
3562 5574 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
3563 5575 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
3564 5576 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
3596 5608 9.503399 AGACACCTTATATTTCGAACTTTTTCT 57.497 29.630 0.00 0.00 0.00 2.52
3598 5610 9.893305 CAAGACACCTTATATTTCGAACTTTTT 57.107 29.630 0.00 0.00 0.00 1.94
3599 5611 8.021396 GCAAGACACCTTATATTTCGAACTTTT 58.979 33.333 0.00 0.00 0.00 2.27
3600 5612 7.527457 GCAAGACACCTTATATTTCGAACTTT 58.473 34.615 0.00 0.00 0.00 2.66
3601 5613 6.183360 CGCAAGACACCTTATATTTCGAACTT 60.183 38.462 0.00 0.00 43.02 2.66
3602 5614 5.291128 CGCAAGACACCTTATATTTCGAACT 59.709 40.000 0.00 0.00 43.02 3.01
3603 5615 5.063060 ACGCAAGACACCTTATATTTCGAAC 59.937 40.000 0.00 0.00 43.62 3.95
3604 5616 5.172934 ACGCAAGACACCTTATATTTCGAA 58.827 37.500 0.00 0.00 43.62 3.71
3605 5617 4.751060 ACGCAAGACACCTTATATTTCGA 58.249 39.130 0.00 0.00 43.62 3.71
3606 5618 5.255596 CAACGCAAGACACCTTATATTTCG 58.744 41.667 0.00 0.00 43.62 3.46
3607 5619 5.028375 GCAACGCAAGACACCTTATATTTC 58.972 41.667 0.00 0.00 43.62 2.17
3608 5620 4.457603 TGCAACGCAAGACACCTTATATTT 59.542 37.500 0.00 0.00 43.62 1.40
3609 5621 4.006989 TGCAACGCAAGACACCTTATATT 58.993 39.130 0.00 0.00 43.62 1.28
3610 5622 3.374058 GTGCAACGCAAGACACCTTATAT 59.626 43.478 0.00 0.00 41.47 0.86
3611 5623 2.739913 GTGCAACGCAAGACACCTTATA 59.260 45.455 0.00 0.00 41.47 0.98
3612 5624 1.535462 GTGCAACGCAAGACACCTTAT 59.465 47.619 0.00 0.00 41.47 1.73
3613 5625 0.941542 GTGCAACGCAAGACACCTTA 59.058 50.000 0.00 0.00 41.47 2.69
3614 5626 1.727467 GTGCAACGCAAGACACCTT 59.273 52.632 0.00 0.00 41.47 3.50
3615 5627 3.420943 GTGCAACGCAAGACACCT 58.579 55.556 0.00 0.00 41.47 4.00
3616 5628 2.331451 GGTGCAACGCAAGACACC 59.669 61.111 0.00 0.00 46.03 4.16
3617 5629 1.298339 GTGGTGCAACGCAAGACAC 60.298 57.895 11.22 0.00 41.47 3.67
3618 5630 1.029408 AAGTGGTGCAACGCAAGACA 61.029 50.000 19.16 0.00 41.47 3.41
3619 5631 0.592247 CAAGTGGTGCAACGCAAGAC 60.592 55.000 19.16 0.00 41.47 3.01
3620 5632 1.029408 ACAAGTGGTGCAACGCAAGA 61.029 50.000 19.16 0.00 41.47 3.02
3621 5633 0.179140 AACAAGTGGTGCAACGCAAG 60.179 50.000 19.16 11.69 41.47 4.01
3622 5634 0.244994 AAACAAGTGGTGCAACGCAA 59.755 45.000 19.16 0.00 41.47 4.85
3623 5635 0.457509 CAAACAAGTGGTGCAACGCA 60.458 50.000 19.16 0.00 38.12 5.24
3624 5636 0.179150 TCAAACAAGTGGTGCAACGC 60.179 50.000 7.36 7.36 38.12 4.84
3625 5637 2.270275 TTCAAACAAGTGGTGCAACG 57.730 45.000 0.00 0.00 38.12 4.10
3626 5638 6.843069 AAATATTCAAACAAGTGGTGCAAC 57.157 33.333 0.00 0.00 0.00 4.17
3627 5639 7.856145 AAAAATATTCAAACAAGTGGTGCAA 57.144 28.000 0.00 0.00 0.00 4.08
3677 5689 9.785982 GAGAAAATAGAGGAGTTTGCCTAATAT 57.214 33.333 0.00 0.00 38.73 1.28
3678 5690 8.768397 TGAGAAAATAGAGGAGTTTGCCTAATA 58.232 33.333 0.00 0.00 38.73 0.98
3679 5691 7.633789 TGAGAAAATAGAGGAGTTTGCCTAAT 58.366 34.615 0.00 0.00 38.73 1.73
3680 5692 7.016153 TGAGAAAATAGAGGAGTTTGCCTAA 57.984 36.000 0.00 0.00 38.73 2.69
3681 5693 6.620877 TGAGAAAATAGAGGAGTTTGCCTA 57.379 37.500 0.00 0.00 38.73 3.93
3682 5694 5.505181 TGAGAAAATAGAGGAGTTTGCCT 57.495 39.130 0.00 0.00 42.17 4.75
3683 5695 5.649831 ACATGAGAAAATAGAGGAGTTTGCC 59.350 40.000 0.00 0.00 0.00 4.52
3684 5696 6.372659 TGACATGAGAAAATAGAGGAGTTTGC 59.627 38.462 0.00 0.00 0.00 3.68
3685 5697 7.912056 TGACATGAGAAAATAGAGGAGTTTG 57.088 36.000 0.00 0.00 0.00 2.93
3686 5698 9.525826 AATTGACATGAGAAAATAGAGGAGTTT 57.474 29.630 0.00 0.00 0.00 2.66
3688 5700 9.829507 CTAATTGACATGAGAAAATAGAGGAGT 57.170 33.333 0.00 0.00 0.00 3.85
3689 5701 9.829507 ACTAATTGACATGAGAAAATAGAGGAG 57.170 33.333 0.00 0.00 0.00 3.69
3690 5702 9.823647 GACTAATTGACATGAGAAAATAGAGGA 57.176 33.333 0.00 0.00 0.00 3.71
3691 5703 9.605275 TGACTAATTGACATGAGAAAATAGAGG 57.395 33.333 0.00 0.00 0.00 3.69
3693 5705 9.605275 CCTGACTAATTGACATGAGAAAATAGA 57.395 33.333 0.00 0.00 0.00 1.98
3694 5706 9.388506 ACCTGACTAATTGACATGAGAAAATAG 57.611 33.333 0.00 0.49 0.00 1.73
3695 5707 9.166173 CACCTGACTAATTGACATGAGAAAATA 57.834 33.333 0.00 0.00 0.00 1.40
3696 5708 7.667219 ACACCTGACTAATTGACATGAGAAAAT 59.333 33.333 0.00 0.00 0.00 1.82
3697 5709 6.998074 ACACCTGACTAATTGACATGAGAAAA 59.002 34.615 0.00 0.00 0.00 2.29
3698 5710 6.533730 ACACCTGACTAATTGACATGAGAAA 58.466 36.000 0.00 0.00 0.00 2.52
3699 5711 6.114187 ACACCTGACTAATTGACATGAGAA 57.886 37.500 0.00 0.00 0.00 2.87
3700 5712 5.745312 ACACCTGACTAATTGACATGAGA 57.255 39.130 0.00 0.00 0.00 3.27
3701 5713 7.984050 AGATTACACCTGACTAATTGACATGAG 59.016 37.037 0.00 0.00 0.00 2.90
3702 5714 7.851228 AGATTACACCTGACTAATTGACATGA 58.149 34.615 0.00 0.00 0.00 3.07
3703 5715 7.043125 CGAGATTACACCTGACTAATTGACATG 60.043 40.741 0.00 0.00 0.00 3.21
3704 5716 6.980978 CGAGATTACACCTGACTAATTGACAT 59.019 38.462 0.00 0.00 0.00 3.06
3705 5717 6.330278 CGAGATTACACCTGACTAATTGACA 58.670 40.000 0.00 0.00 0.00 3.58
3706 5718 5.232414 GCGAGATTACACCTGACTAATTGAC 59.768 44.000 0.00 0.00 0.00 3.18
3707 5719 5.348986 GCGAGATTACACCTGACTAATTGA 58.651 41.667 0.00 0.00 0.00 2.57
3708 5720 4.508124 GGCGAGATTACACCTGACTAATTG 59.492 45.833 0.00 0.00 0.00 2.32
3709 5721 4.443034 GGGCGAGATTACACCTGACTAATT 60.443 45.833 0.00 0.00 0.00 1.40
3710 5722 3.069729 GGGCGAGATTACACCTGACTAAT 59.930 47.826 0.00 0.00 0.00 1.73
3711 5723 2.429610 GGGCGAGATTACACCTGACTAA 59.570 50.000 0.00 0.00 0.00 2.24
3712 5724 2.029623 GGGCGAGATTACACCTGACTA 58.970 52.381 0.00 0.00 0.00 2.59
3713 5725 0.824759 GGGCGAGATTACACCTGACT 59.175 55.000 0.00 0.00 0.00 3.41
3714 5726 0.535335 TGGGCGAGATTACACCTGAC 59.465 55.000 0.00 0.00 0.00 3.51
3715 5727 1.271856 TTGGGCGAGATTACACCTGA 58.728 50.000 0.00 0.00 0.00 3.86
3716 5728 2.107950 TTTGGGCGAGATTACACCTG 57.892 50.000 0.00 0.00 0.00 4.00
3717 5729 2.039879 AGTTTTGGGCGAGATTACACCT 59.960 45.455 0.00 0.00 0.00 4.00
3718 5730 2.433436 AGTTTTGGGCGAGATTACACC 58.567 47.619 0.00 0.00 0.00 4.16
3719 5731 3.252458 ACAAGTTTTGGGCGAGATTACAC 59.748 43.478 0.00 0.00 34.12 2.90
3720 5732 3.252215 CACAAGTTTTGGGCGAGATTACA 59.748 43.478 0.00 0.00 34.12 2.41
3721 5733 3.500680 TCACAAGTTTTGGGCGAGATTAC 59.499 43.478 0.00 0.00 32.92 1.89
3722 5734 3.745799 TCACAAGTTTTGGGCGAGATTA 58.254 40.909 0.00 0.00 32.92 1.75
3723 5735 2.582052 TCACAAGTTTTGGGCGAGATT 58.418 42.857 0.00 0.00 32.92 2.40
3724 5736 2.270352 TCACAAGTTTTGGGCGAGAT 57.730 45.000 0.00 0.00 32.92 2.75
3725 5737 2.045561 TTCACAAGTTTTGGGCGAGA 57.954 45.000 0.00 0.00 32.92 4.04
3726 5738 2.861462 TTTCACAAGTTTTGGGCGAG 57.139 45.000 0.00 0.00 32.92 5.03
3727 5739 3.810310 AATTTCACAAGTTTTGGGCGA 57.190 38.095 0.00 0.00 32.92 5.54
3728 5740 4.331168 TGAAAATTTCACAAGTTTTGGGCG 59.669 37.500 4.03 0.00 30.39 6.13
3729 5741 5.809719 TGAAAATTTCACAAGTTTTGGGC 57.190 34.783 4.03 0.00 30.39 5.36
3751 5763 2.228138 TTAAAGAACGCACGTGGAGT 57.772 45.000 18.88 3.06 0.00 3.85
3752 5764 3.806316 AATTAAAGAACGCACGTGGAG 57.194 42.857 18.88 2.38 0.00 3.86
3753 5765 4.529446 GAAAATTAAAGAACGCACGTGGA 58.471 39.130 18.88 0.00 0.00 4.02
3754 5766 3.356658 CGAAAATTAAAGAACGCACGTGG 59.643 43.478 18.88 10.05 0.00 4.94
3755 5767 3.963724 ACGAAAATTAAAGAACGCACGTG 59.036 39.130 12.28 12.28 0.00 4.49
3756 5768 3.963724 CACGAAAATTAAAGAACGCACGT 59.036 39.130 0.00 0.00 0.00 4.49
3757 5769 3.181567 GCACGAAAATTAAAGAACGCACG 60.182 43.478 0.00 0.00 0.00 5.34
3758 5770 3.118972 GGCACGAAAATTAAAGAACGCAC 59.881 43.478 0.00 0.00 0.00 5.34
3759 5771 3.243101 TGGCACGAAAATTAAAGAACGCA 60.243 39.130 0.00 0.00 0.00 5.24
3760 5772 3.301706 TGGCACGAAAATTAAAGAACGC 58.698 40.909 0.00 0.00 0.00 4.84
3761 5773 5.874892 TTTGGCACGAAAATTAAAGAACG 57.125 34.783 0.00 0.00 0.00 3.95
3762 5774 7.680982 AGTTTTTGGCACGAAAATTAAAGAAC 58.319 30.769 0.84 0.00 0.00 3.01
3763 5775 7.835634 AGTTTTTGGCACGAAAATTAAAGAA 57.164 28.000 0.84 0.00 0.00 2.52
3766 5778 9.745880 TGTATAGTTTTTGGCACGAAAATTAAA 57.254 25.926 0.84 0.00 0.00 1.52
3767 5779 9.182933 GTGTATAGTTTTTGGCACGAAAATTAA 57.817 29.630 0.84 0.00 0.00 1.40
3768 5780 7.808856 GGTGTATAGTTTTTGGCACGAAAATTA 59.191 33.333 0.84 2.13 0.00 1.40
3769 5781 6.643360 GGTGTATAGTTTTTGGCACGAAAATT 59.357 34.615 0.84 0.06 0.00 1.82
3770 5782 6.153756 GGTGTATAGTTTTTGGCACGAAAAT 58.846 36.000 0.84 1.41 0.00 1.82
3771 5783 5.507650 GGGTGTATAGTTTTTGGCACGAAAA 60.508 40.000 0.00 0.00 0.00 2.29
3772 5784 4.023021 GGGTGTATAGTTTTTGGCACGAAA 60.023 41.667 0.00 0.00 0.00 3.46
3773 5785 3.502979 GGGTGTATAGTTTTTGGCACGAA 59.497 43.478 0.00 0.00 0.00 3.85
3774 5786 3.075884 GGGTGTATAGTTTTTGGCACGA 58.924 45.455 0.00 0.00 0.00 4.35
3775 5787 3.078837 AGGGTGTATAGTTTTTGGCACG 58.921 45.455 0.00 0.00 0.00 5.34
3776 5788 8.459911 AATATAGGGTGTATAGTTTTTGGCAC 57.540 34.615 0.00 0.00 0.00 5.01
3795 5807 7.630944 GCATACTCCCTCCGTTCCTAAATATAG 60.631 44.444 0.00 0.00 0.00 1.31
3796 5808 6.154021 GCATACTCCCTCCGTTCCTAAATATA 59.846 42.308 0.00 0.00 0.00 0.86
3797 5809 5.046520 GCATACTCCCTCCGTTCCTAAATAT 60.047 44.000 0.00 0.00 0.00 1.28
3798 5810 4.282703 GCATACTCCCTCCGTTCCTAAATA 59.717 45.833 0.00 0.00 0.00 1.40
3799 5811 3.071167 GCATACTCCCTCCGTTCCTAAAT 59.929 47.826 0.00 0.00 0.00 1.40
3800 5812 2.433239 GCATACTCCCTCCGTTCCTAAA 59.567 50.000 0.00 0.00 0.00 1.85
3801 5813 2.037144 GCATACTCCCTCCGTTCCTAA 58.963 52.381 0.00 0.00 0.00 2.69
3802 5814 1.217183 AGCATACTCCCTCCGTTCCTA 59.783 52.381 0.00 0.00 0.00 2.94
3803 5815 0.032017 AGCATACTCCCTCCGTTCCT 60.032 55.000 0.00 0.00 0.00 3.36
3804 5816 0.831307 AAGCATACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
3805 5817 2.693267 AAAGCATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
3806 5818 3.434940 AAAAAGCATACTCCCTCCGTT 57.565 42.857 0.00 0.00 0.00 4.44
3979 5991 5.319453 AGCAACAATCTCAATCCTTTCTGA 58.681 37.500 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.