Multiple sequence alignment - TraesCS1A01G133000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G133000 chr1A 100.000 3482 0 0 1 3482 185116192 185119673 0.000000e+00 6431.0
1 TraesCS1A01G133000 chr1A 95.677 347 15 0 1 347 572218463 572218117 3.040000e-155 558.0
2 TraesCS1A01G133000 chr1D 95.924 2208 52 6 386 2559 155738173 155735970 0.000000e+00 3544.0
3 TraesCS1A01G133000 chr1D 98.046 307 6 0 2576 2882 155735983 155735677 5.120000e-148 534.0
4 TraesCS1A01G133000 chr1D 94.382 178 7 2 3238 3413 155735293 155735117 1.590000e-68 270.0
5 TraesCS1A01G133000 chr1D 85.859 198 16 4 2974 3171 155735487 155735302 2.120000e-47 200.0
6 TraesCS1A01G133000 chr1B 92.677 2185 65 24 447 2559 236952657 236954818 0.000000e+00 3061.0
7 TraesCS1A01G133000 chr1B 86.283 452 30 9 2933 3363 236955280 236955720 2.450000e-126 462.0
8 TraesCS1A01G133000 chr1B 91.353 266 10 5 2576 2841 236954805 236955057 5.530000e-93 351.0
9 TraesCS1A01G133000 chr1B 91.111 135 8 1 2748 2882 236955055 236955185 2.760000e-41 180.0
10 TraesCS1A01G133000 chr1B 92.857 42 2 1 3370 3411 517502298 517502338 3.750000e-05 60.2
11 TraesCS1A01G133000 chr7A 95.065 385 19 0 1 385 710469982 710469598 1.070000e-169 606.0
12 TraesCS1A01G133000 chr7A 94.574 387 19 1 1 385 279936398 279936012 6.430000e-167 597.0
13 TraesCS1A01G133000 chr7A 90.722 388 34 2 1 387 55412104 55412490 1.850000e-142 516.0
14 TraesCS1A01G133000 chrUn 93.639 393 23 1 1 393 74556973 74557363 1.390000e-163 586.0
15 TraesCS1A01G133000 chr7D 92.208 385 30 0 1 385 599534738 599535122 2.360000e-151 545.0
16 TraesCS1A01G133000 chr5D 91.371 394 32 2 1 392 32612689 32612296 3.950000e-149 538.0
17 TraesCS1A01G133000 chr5D 95.238 42 1 1 3370 3411 5596093 5596053 8.070000e-07 65.8
18 TraesCS1A01G133000 chr4D 91.710 386 30 2 1 385 364573380 364572996 5.120000e-148 534.0
19 TraesCS1A01G133000 chr2D 91.473 387 31 2 1 386 401096989 401096604 6.620000e-147 531.0
20 TraesCS1A01G133000 chr3D 77.844 167 29 6 1564 1729 414628033 414627874 2.860000e-16 97.1
21 TraesCS1A01G133000 chr3A 77.844 167 29 6 1564 1729 535825154 535825313 2.860000e-16 97.1
22 TraesCS1A01G133000 chr3B 77.246 167 30 6 1564 1729 540455560 540455401 1.330000e-14 91.6
23 TraesCS1A01G133000 chr5A 89.706 68 1 4 3349 3411 618479496 618479562 8.010000e-12 82.4
24 TraesCS1A01G133000 chr5B 95.238 42 1 1 3370 3411 542324886 542324846 8.070000e-07 65.8
25 TraesCS1A01G133000 chr4B 95.000 40 0 1 3372 3411 502957232 502957269 1.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G133000 chr1A 185116192 185119673 3481 False 6431.0 6431 100.00000 1 3482 1 chr1A.!!$F1 3481
1 TraesCS1A01G133000 chr1D 155735117 155738173 3056 True 1137.0 3544 93.55275 386 3413 4 chr1D.!!$R1 3027
2 TraesCS1A01G133000 chr1B 236952657 236955720 3063 False 1013.5 3061 90.35600 447 3363 4 chr1B.!!$F2 2916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.027979 CCGCCACGTCATGCATAAAG 59.972 55.0 0.00 0.00 0.0 1.85 F
341 342 0.249489 ATGTATGAGAGTTCGGCCGC 60.249 55.0 23.51 7.63 0.0 6.53 F
1269 1301 0.389166 GACGTGACAGCAAGGAGGAG 60.389 60.0 0.00 0.00 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1599 0.036010 CAAATCCTCCGTGCACCTCT 60.036 55.0 12.15 0.0 0.0 3.69 R
2251 2326 0.756294 TGGTCTTTGGAGTCGCTGAA 59.244 50.0 0.00 0.0 0.0 3.02 R
2892 3147 0.179018 GGTTCCTGCTGTCCACTTGT 60.179 55.0 0.00 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.971321 CCATTCAGTACTAAAATTGCATAATGC 58.029 33.333 0.00 0.00 45.29 3.56
49 50 6.918892 TGCAGTACTAAAATTGCACGATAT 57.081 33.333 0.00 0.00 41.23 1.63
51 52 8.072238 TGCAGTACTAAAATTGCACGATATAG 57.928 34.615 0.00 0.00 41.23 1.31
52 53 7.010023 GCAGTACTAAAATTGCACGATATAGC 58.990 38.462 0.00 0.00 36.59 2.97
53 54 7.307160 GCAGTACTAAAATTGCACGATATAGCA 60.307 37.037 0.00 0.00 39.32 3.49
54 55 8.712363 CAGTACTAAAATTGCACGATATAGCAT 58.288 33.333 0.00 0.00 40.94 3.79
55 56 8.926710 AGTACTAAAATTGCACGATATAGCATC 58.073 33.333 0.00 0.00 40.94 3.91
56 57 7.728847 ACTAAAATTGCACGATATAGCATCA 57.271 32.000 0.00 0.00 40.94 3.07
57 58 8.153479 ACTAAAATTGCACGATATAGCATCAA 57.847 30.769 0.00 0.00 40.94 2.57
58 59 8.620416 ACTAAAATTGCACGATATAGCATCAAA 58.380 29.630 0.00 0.00 40.94 2.69
59 60 7.919313 AAAATTGCACGATATAGCATCAAAG 57.081 32.000 0.00 0.00 40.94 2.77
60 61 6.624352 AATTGCACGATATAGCATCAAAGT 57.376 33.333 0.00 0.00 40.94 2.66
61 62 6.624352 ATTGCACGATATAGCATCAAAGTT 57.376 33.333 0.00 0.00 40.94 2.66
62 63 5.408204 TGCACGATATAGCATCAAAGTTG 57.592 39.130 0.00 0.00 35.51 3.16
63 64 4.273235 TGCACGATATAGCATCAAAGTTGG 59.727 41.667 0.00 0.00 35.51 3.77
64 65 4.776743 CACGATATAGCATCAAAGTTGGC 58.223 43.478 0.00 0.00 0.00 4.52
65 66 4.273235 CACGATATAGCATCAAAGTTGGCA 59.727 41.667 0.00 0.00 0.00 4.92
66 67 5.049198 CACGATATAGCATCAAAGTTGGCAT 60.049 40.000 0.00 0.00 0.00 4.40
67 68 5.180117 ACGATATAGCATCAAAGTTGGCATC 59.820 40.000 0.00 0.00 0.00 3.91
68 69 5.179929 CGATATAGCATCAAAGTTGGCATCA 59.820 40.000 0.00 0.00 0.00 3.07
69 70 6.293571 CGATATAGCATCAAAGTTGGCATCAA 60.294 38.462 0.00 0.00 0.00 2.57
70 71 5.864418 ATAGCATCAAAGTTGGCATCAAT 57.136 34.783 0.00 0.00 35.10 2.57
71 72 4.546829 AGCATCAAAGTTGGCATCAATT 57.453 36.364 0.00 0.00 35.10 2.32
72 73 4.901868 AGCATCAAAGTTGGCATCAATTT 58.098 34.783 0.00 0.00 34.86 1.82
73 74 5.310451 AGCATCAAAGTTGGCATCAATTTT 58.690 33.333 0.00 0.00 41.44 1.82
74 75 5.766174 AGCATCAAAGTTGGCATCAATTTTT 59.234 32.000 0.00 0.00 39.65 1.94
98 99 7.786178 TTTCGTCAAAATATACTCATGGAGG 57.214 36.000 0.00 0.00 33.35 4.30
99 100 6.724893 TCGTCAAAATATACTCATGGAGGA 57.275 37.500 0.00 0.00 33.35 3.71
100 101 7.303182 TCGTCAAAATATACTCATGGAGGAT 57.697 36.000 0.00 0.00 37.04 3.24
101 102 7.378966 TCGTCAAAATATACTCATGGAGGATC 58.621 38.462 0.00 0.00 34.66 3.36
102 103 7.233553 TCGTCAAAATATACTCATGGAGGATCT 59.766 37.037 0.00 0.00 34.66 2.75
103 104 8.523658 CGTCAAAATATACTCATGGAGGATCTA 58.476 37.037 0.00 0.00 34.66 1.98
104 105 9.868277 GTCAAAATATACTCATGGAGGATCTAG 57.132 37.037 0.00 0.00 34.66 2.43
105 106 9.607333 TCAAAATATACTCATGGAGGATCTAGT 57.393 33.333 0.00 0.00 34.66 2.57
109 110 9.607333 AATATACTCATGGAGGATCTAGTTTCA 57.393 33.333 0.00 0.00 34.66 2.69
110 111 7.921041 ATACTCATGGAGGATCTAGTTTCAA 57.079 36.000 0.00 0.00 23.90 2.69
111 112 6.627087 ACTCATGGAGGATCTAGTTTCAAA 57.373 37.500 0.00 0.00 33.35 2.69
112 113 6.648192 ACTCATGGAGGATCTAGTTTCAAAG 58.352 40.000 0.00 0.00 33.35 2.77
113 114 6.441924 ACTCATGGAGGATCTAGTTTCAAAGA 59.558 38.462 0.00 0.00 33.35 2.52
114 115 7.127032 ACTCATGGAGGATCTAGTTTCAAAGAT 59.873 37.037 0.00 0.00 33.35 2.40
115 116 7.865820 TCATGGAGGATCTAGTTTCAAAGATT 58.134 34.615 0.00 0.00 32.60 2.40
116 117 8.331740 TCATGGAGGATCTAGTTTCAAAGATTT 58.668 33.333 0.00 0.00 32.60 2.17
117 118 8.619546 CATGGAGGATCTAGTTTCAAAGATTTC 58.380 37.037 0.00 0.00 32.60 2.17
118 119 6.818644 TGGAGGATCTAGTTTCAAAGATTTCG 59.181 38.462 0.00 0.00 32.60 3.46
119 120 6.238239 GGAGGATCTAGTTTCAAAGATTTCGC 60.238 42.308 0.00 0.00 32.60 4.70
120 121 5.586643 AGGATCTAGTTTCAAAGATTTCGCC 59.413 40.000 0.00 0.00 32.60 5.54
121 122 4.921470 TCTAGTTTCAAAGATTTCGCCG 57.079 40.909 0.00 0.00 0.00 6.46
122 123 2.331809 AGTTTCAAAGATTTCGCCGC 57.668 45.000 0.00 0.00 0.00 6.53
123 124 0.974836 GTTTCAAAGATTTCGCCGCG 59.025 50.000 6.39 6.39 0.00 6.46
124 125 0.869068 TTTCAAAGATTTCGCCGCGA 59.131 45.000 12.39 12.39 0.00 5.87
125 126 0.442310 TTCAAAGATTTCGCCGCGAG 59.558 50.000 16.14 0.24 37.14 5.03
137 138 4.514577 CGCGAGGAATCCAGCGGT 62.515 66.667 26.36 0.00 44.48 5.68
138 139 2.892425 GCGAGGAATCCAGCGGTG 60.892 66.667 7.86 7.86 0.00 4.94
139 140 2.892640 CGAGGAATCCAGCGGTGA 59.107 61.111 17.83 2.44 0.00 4.02
140 141 1.218047 CGAGGAATCCAGCGGTGAA 59.782 57.895 17.83 0.00 0.00 3.18
141 142 0.807667 CGAGGAATCCAGCGGTGAAG 60.808 60.000 17.83 0.00 0.00 3.02
142 143 0.537188 GAGGAATCCAGCGGTGAAGA 59.463 55.000 17.83 6.06 0.00 2.87
143 144 1.139853 GAGGAATCCAGCGGTGAAGAT 59.860 52.381 17.83 8.39 0.00 2.40
144 145 1.134280 AGGAATCCAGCGGTGAAGATG 60.134 52.381 17.83 0.00 0.00 2.90
145 146 1.134401 GGAATCCAGCGGTGAAGATGA 60.134 52.381 17.83 4.42 0.00 2.92
146 147 2.632377 GAATCCAGCGGTGAAGATGAA 58.368 47.619 17.83 0.00 0.00 2.57
147 148 3.209410 GAATCCAGCGGTGAAGATGAAT 58.791 45.455 17.83 0.00 0.00 2.57
148 149 2.315925 TCCAGCGGTGAAGATGAATC 57.684 50.000 17.83 0.00 0.00 2.52
149 150 1.833630 TCCAGCGGTGAAGATGAATCT 59.166 47.619 17.83 0.00 39.22 2.40
150 151 1.938577 CCAGCGGTGAAGATGAATCTG 59.061 52.381 17.83 0.00 37.19 2.90
151 152 2.419159 CCAGCGGTGAAGATGAATCTGA 60.419 50.000 17.83 0.00 37.19 3.27
152 153 3.264947 CAGCGGTGAAGATGAATCTGAA 58.735 45.455 9.50 0.00 37.19 3.02
153 154 3.875727 CAGCGGTGAAGATGAATCTGAAT 59.124 43.478 9.50 0.00 37.19 2.57
154 155 4.334759 CAGCGGTGAAGATGAATCTGAATT 59.665 41.667 9.50 0.00 37.19 2.17
155 156 4.946157 AGCGGTGAAGATGAATCTGAATTT 59.054 37.500 0.00 0.00 37.19 1.82
156 157 5.032863 GCGGTGAAGATGAATCTGAATTTG 58.967 41.667 0.00 0.00 37.19 2.32
157 158 5.575957 CGGTGAAGATGAATCTGAATTTGG 58.424 41.667 0.00 0.00 37.19 3.28
158 159 5.355071 CGGTGAAGATGAATCTGAATTTGGA 59.645 40.000 0.00 0.00 37.19 3.53
159 160 6.039047 CGGTGAAGATGAATCTGAATTTGGAT 59.961 38.462 0.00 0.00 37.19 3.41
160 161 7.201145 GGTGAAGATGAATCTGAATTTGGATG 58.799 38.462 0.00 0.00 37.19 3.51
161 162 6.696148 GTGAAGATGAATCTGAATTTGGATGC 59.304 38.462 0.00 0.00 37.19 3.91
162 163 6.378848 TGAAGATGAATCTGAATTTGGATGCA 59.621 34.615 0.00 0.00 37.19 3.96
163 164 6.145338 AGATGAATCTGAATTTGGATGCAC 57.855 37.500 0.00 0.00 35.42 4.57
164 165 4.359971 TGAATCTGAATTTGGATGCACG 57.640 40.909 0.00 0.00 0.00 5.34
165 166 3.129113 TGAATCTGAATTTGGATGCACGG 59.871 43.478 0.00 0.00 0.00 4.94
166 167 2.198827 TCTGAATTTGGATGCACGGT 57.801 45.000 0.00 0.00 0.00 4.83
167 168 2.513753 TCTGAATTTGGATGCACGGTT 58.486 42.857 0.00 0.00 0.00 4.44
168 169 2.890311 TCTGAATTTGGATGCACGGTTT 59.110 40.909 0.00 0.00 0.00 3.27
169 170 2.988493 CTGAATTTGGATGCACGGTTTG 59.012 45.455 0.00 0.00 0.00 2.93
170 171 2.625314 TGAATTTGGATGCACGGTTTGA 59.375 40.909 0.00 0.00 0.00 2.69
171 172 3.068732 TGAATTTGGATGCACGGTTTGAA 59.931 39.130 0.00 0.00 0.00 2.69
172 173 3.742433 ATTTGGATGCACGGTTTGAAA 57.258 38.095 0.00 0.00 0.00 2.69
173 174 2.791383 TTGGATGCACGGTTTGAAAG 57.209 45.000 0.00 0.00 0.00 2.62
174 175 1.974265 TGGATGCACGGTTTGAAAGA 58.026 45.000 0.00 0.00 0.00 2.52
175 176 2.513753 TGGATGCACGGTTTGAAAGAT 58.486 42.857 0.00 0.00 0.00 2.40
176 177 3.680490 TGGATGCACGGTTTGAAAGATA 58.320 40.909 0.00 0.00 0.00 1.98
177 178 4.269183 TGGATGCACGGTTTGAAAGATAT 58.731 39.130 0.00 0.00 0.00 1.63
178 179 4.096231 TGGATGCACGGTTTGAAAGATATG 59.904 41.667 0.00 0.00 0.00 1.78
179 180 4.335315 GGATGCACGGTTTGAAAGATATGA 59.665 41.667 0.00 0.00 0.00 2.15
180 181 4.678509 TGCACGGTTTGAAAGATATGAC 57.321 40.909 0.00 0.00 0.00 3.06
181 182 4.323417 TGCACGGTTTGAAAGATATGACT 58.677 39.130 0.00 0.00 0.00 3.41
182 183 4.759693 TGCACGGTTTGAAAGATATGACTT 59.240 37.500 0.00 0.00 0.00 3.01
183 184 5.240623 TGCACGGTTTGAAAGATATGACTTT 59.759 36.000 0.00 0.00 41.86 2.66
184 185 6.149633 GCACGGTTTGAAAGATATGACTTTT 58.850 36.000 0.00 0.00 39.71 2.27
185 186 6.640907 GCACGGTTTGAAAGATATGACTTTTT 59.359 34.615 0.00 0.00 39.71 1.94
186 187 7.806014 GCACGGTTTGAAAGATATGACTTTTTA 59.194 33.333 0.00 0.00 39.71 1.52
187 188 9.672086 CACGGTTTGAAAGATATGACTTTTTAA 57.328 29.630 0.00 0.00 39.71 1.52
214 215 6.670077 TTTGAAAACCCAAAATAAGTGCAC 57.330 33.333 9.40 9.40 33.56 4.57
215 216 5.344743 TGAAAACCCAAAATAAGTGCACA 57.655 34.783 21.04 0.00 0.00 4.57
216 217 5.923204 TGAAAACCCAAAATAAGTGCACAT 58.077 33.333 21.04 10.23 0.00 3.21
217 218 5.757320 TGAAAACCCAAAATAAGTGCACATG 59.243 36.000 21.04 7.60 0.00 3.21
218 219 3.317603 ACCCAAAATAAGTGCACATGC 57.682 42.857 21.04 0.00 42.50 4.06
228 229 3.684113 GCACATGCACACCCATCA 58.316 55.556 0.00 0.00 41.59 3.07
229 230 1.509463 GCACATGCACACCCATCAG 59.491 57.895 0.00 0.00 41.59 2.90
230 231 0.961857 GCACATGCACACCCATCAGA 60.962 55.000 0.00 0.00 41.59 3.27
231 232 0.806868 CACATGCACACCCATCAGAC 59.193 55.000 0.00 0.00 0.00 3.51
232 233 0.401356 ACATGCACACCCATCAGACA 59.599 50.000 0.00 0.00 0.00 3.41
233 234 1.202915 ACATGCACACCCATCAGACAA 60.203 47.619 0.00 0.00 0.00 3.18
234 235 1.471287 CATGCACACCCATCAGACAAG 59.529 52.381 0.00 0.00 0.00 3.16
235 236 0.250858 TGCACACCCATCAGACAAGG 60.251 55.000 0.00 0.00 0.00 3.61
236 237 0.036732 GCACACCCATCAGACAAGGA 59.963 55.000 0.00 0.00 0.00 3.36
237 238 1.545428 GCACACCCATCAGACAAGGAA 60.545 52.381 0.00 0.00 0.00 3.36
238 239 2.881403 GCACACCCATCAGACAAGGAAT 60.881 50.000 0.00 0.00 0.00 3.01
239 240 3.012518 CACACCCATCAGACAAGGAATC 58.987 50.000 0.00 0.00 0.00 2.52
240 241 2.915604 ACACCCATCAGACAAGGAATCT 59.084 45.455 0.00 0.00 0.00 2.40
241 242 3.054802 ACACCCATCAGACAAGGAATCTC 60.055 47.826 0.00 0.00 0.00 2.75
242 243 3.199508 CACCCATCAGACAAGGAATCTCT 59.800 47.826 0.00 0.00 0.00 3.10
243 244 3.848975 ACCCATCAGACAAGGAATCTCTT 59.151 43.478 0.00 0.00 0.00 2.85
244 245 4.197750 CCCATCAGACAAGGAATCTCTTG 58.802 47.826 9.04 9.04 46.86 3.02
245 246 3.626670 CCATCAGACAAGGAATCTCTTGC 59.373 47.826 10.11 5.26 45.77 4.01
246 247 4.515361 CATCAGACAAGGAATCTCTTGCT 58.485 43.478 10.11 6.86 45.77 3.91
247 248 4.199432 TCAGACAAGGAATCTCTTGCTC 57.801 45.455 10.11 7.91 45.77 4.26
248 249 3.580022 TCAGACAAGGAATCTCTTGCTCA 59.420 43.478 10.11 0.00 45.77 4.26
249 250 3.683822 CAGACAAGGAATCTCTTGCTCAC 59.316 47.826 10.11 2.89 45.77 3.51
250 251 3.326006 AGACAAGGAATCTCTTGCTCACA 59.674 43.478 10.11 0.00 45.77 3.58
251 252 4.019501 AGACAAGGAATCTCTTGCTCACAT 60.020 41.667 10.11 0.00 45.77 3.21
252 253 4.008330 ACAAGGAATCTCTTGCTCACATG 58.992 43.478 10.11 0.00 45.77 3.21
253 254 4.259356 CAAGGAATCTCTTGCTCACATGA 58.741 43.478 0.00 0.00 37.84 3.07
254 255 4.564782 AGGAATCTCTTGCTCACATGAA 57.435 40.909 0.00 0.00 30.30 2.57
255 256 5.113446 AGGAATCTCTTGCTCACATGAAT 57.887 39.130 0.00 0.00 30.30 2.57
256 257 6.244552 AGGAATCTCTTGCTCACATGAATA 57.755 37.500 0.00 0.00 30.30 1.75
257 258 6.839454 AGGAATCTCTTGCTCACATGAATAT 58.161 36.000 0.00 0.00 30.30 1.28
258 259 6.711194 AGGAATCTCTTGCTCACATGAATATG 59.289 38.462 0.00 0.00 40.24 1.78
260 261 7.307870 GGAATCTCTTGCTCACATGAATATGTC 60.308 40.741 0.00 0.00 45.53 3.06
261 262 5.981174 TCTCTTGCTCACATGAATATGTCA 58.019 37.500 0.00 0.00 45.53 3.58
263 264 7.052248 TCTCTTGCTCACATGAATATGTCATT 58.948 34.615 0.00 0.00 45.13 2.57
264 265 8.206189 TCTCTTGCTCACATGAATATGTCATTA 58.794 33.333 0.00 0.00 45.13 1.90
265 266 8.146479 TCTTGCTCACATGAATATGTCATTAC 57.854 34.615 0.00 0.00 45.13 1.89
266 267 7.989170 TCTTGCTCACATGAATATGTCATTACT 59.011 33.333 0.00 0.00 45.13 2.24
267 268 9.264719 CTTGCTCACATGAATATGTCATTACTA 57.735 33.333 0.00 0.00 45.13 1.82
268 269 9.783081 TTGCTCACATGAATATGTCATTACTAT 57.217 29.630 0.00 0.00 45.13 2.12
269 270 9.428097 TGCTCACATGAATATGTCATTACTATC 57.572 33.333 0.00 0.00 45.13 2.08
270 271 8.877779 GCTCACATGAATATGTCATTACTATCC 58.122 37.037 0.00 0.00 45.13 2.59
271 272 8.986477 TCACATGAATATGTCATTACTATCCG 57.014 34.615 0.00 0.00 45.13 4.18
272 273 7.545615 TCACATGAATATGTCATTACTATCCGC 59.454 37.037 0.00 0.00 45.13 5.54
273 274 6.818644 ACATGAATATGTCATTACTATCCGCC 59.181 38.462 0.00 0.00 45.13 6.13
274 275 6.353404 TGAATATGTCATTACTATCCGCCA 57.647 37.500 0.00 0.00 0.00 5.69
275 276 6.163476 TGAATATGTCATTACTATCCGCCAC 58.837 40.000 0.00 0.00 0.00 5.01
276 277 2.502213 TGTCATTACTATCCGCCACG 57.498 50.000 0.00 0.00 0.00 4.94
277 278 1.752498 TGTCATTACTATCCGCCACGT 59.248 47.619 0.00 0.00 0.00 4.49
278 279 2.223641 TGTCATTACTATCCGCCACGTC 60.224 50.000 0.00 0.00 0.00 4.34
279 280 2.025898 TCATTACTATCCGCCACGTCA 58.974 47.619 0.00 0.00 0.00 4.35
280 281 2.626266 TCATTACTATCCGCCACGTCAT 59.374 45.455 0.00 0.00 0.00 3.06
281 282 2.502213 TTACTATCCGCCACGTCATG 57.498 50.000 0.00 0.00 0.00 3.07
282 283 0.031585 TACTATCCGCCACGTCATGC 59.968 55.000 0.00 0.00 0.00 4.06
283 284 1.227234 CTATCCGCCACGTCATGCA 60.227 57.895 0.00 0.00 0.00 3.96
284 285 0.601046 CTATCCGCCACGTCATGCAT 60.601 55.000 0.00 0.00 0.00 3.96
285 286 0.676736 TATCCGCCACGTCATGCATA 59.323 50.000 0.00 0.00 0.00 3.14
286 287 0.179059 ATCCGCCACGTCATGCATAA 60.179 50.000 0.00 0.00 0.00 1.90
287 288 0.391793 TCCGCCACGTCATGCATAAA 60.392 50.000 0.00 0.00 0.00 1.40
288 289 0.027979 CCGCCACGTCATGCATAAAG 59.972 55.000 0.00 0.00 0.00 1.85
289 290 1.006086 CGCCACGTCATGCATAAAGA 58.994 50.000 0.00 0.00 0.00 2.52
290 291 1.267532 CGCCACGTCATGCATAAAGAC 60.268 52.381 0.00 1.83 0.00 3.01
291 292 1.737236 GCCACGTCATGCATAAAGACA 59.263 47.619 14.06 0.00 32.68 3.41
292 293 2.161410 GCCACGTCATGCATAAAGACAA 59.839 45.455 14.06 0.00 32.68 3.18
293 294 3.365868 GCCACGTCATGCATAAAGACAAA 60.366 43.478 14.06 0.00 32.68 2.83
294 295 4.793071 CCACGTCATGCATAAAGACAAAA 58.207 39.130 14.06 0.00 32.68 2.44
295 296 5.401550 CCACGTCATGCATAAAGACAAAAT 58.598 37.500 14.06 0.00 32.68 1.82
296 297 5.863397 CCACGTCATGCATAAAGACAAAATT 59.137 36.000 14.06 0.00 32.68 1.82
297 298 6.365789 CCACGTCATGCATAAAGACAAAATTT 59.634 34.615 14.06 0.00 32.68 1.82
298 299 7.095691 CCACGTCATGCATAAAGACAAAATTTT 60.096 33.333 14.06 0.00 32.68 1.82
299 300 8.910666 CACGTCATGCATAAAGACAAAATTTTA 58.089 29.630 14.06 0.00 32.68 1.52
300 301 9.128107 ACGTCATGCATAAAGACAAAATTTTAG 57.872 29.630 14.06 1.33 32.68 1.85
301 302 9.340695 CGTCATGCATAAAGACAAAATTTTAGA 57.659 29.630 14.06 0.00 32.68 2.10
306 307 9.809096 TGCATAAAGACAAAATTTTAGACAACA 57.191 25.926 2.44 0.00 0.00 3.33
313 314 8.603181 AGACAAAATTTTAGACAACAACATTGC 58.397 29.630 2.44 0.00 0.00 3.56
314 315 8.261492 ACAAAATTTTAGACAACAACATTGCA 57.739 26.923 2.44 0.00 0.00 4.08
315 316 8.891720 ACAAAATTTTAGACAACAACATTGCAT 58.108 25.926 2.44 0.00 0.00 3.96
316 317 9.160576 CAAAATTTTAGACAACAACATTGCATG 57.839 29.630 2.44 0.00 0.00 4.06
317 318 5.903764 TTTTAGACAACAACATTGCATGC 57.096 34.783 11.82 11.82 0.00 4.06
318 319 4.581077 TTAGACAACAACATTGCATGCA 57.419 36.364 18.46 18.46 0.00 3.96
319 320 3.671008 AGACAACAACATTGCATGCAT 57.329 38.095 23.37 9.04 0.00 3.96
320 321 3.322369 AGACAACAACATTGCATGCATG 58.678 40.909 23.37 22.70 0.00 4.06
336 337 2.867975 TGCATGCATGTATGAGAGTTCG 59.132 45.455 25.73 0.00 0.00 3.95
337 338 2.222678 GCATGCATGTATGAGAGTTCGG 59.777 50.000 25.73 0.00 0.00 4.30
338 339 1.939974 TGCATGTATGAGAGTTCGGC 58.060 50.000 0.00 0.00 0.00 5.54
339 340 1.221414 GCATGTATGAGAGTTCGGCC 58.779 55.000 0.00 0.00 0.00 6.13
340 341 1.491670 CATGTATGAGAGTTCGGCCG 58.508 55.000 22.12 22.12 0.00 6.13
341 342 0.249489 ATGTATGAGAGTTCGGCCGC 60.249 55.000 23.51 7.63 0.00 6.53
342 343 1.320344 TGTATGAGAGTTCGGCCGCT 61.320 55.000 23.51 13.59 0.00 5.52
343 344 0.595310 GTATGAGAGTTCGGCCGCTC 60.595 60.000 23.51 22.09 0.00 5.03
344 345 1.035385 TATGAGAGTTCGGCCGCTCA 61.035 55.000 27.84 27.84 41.14 4.26
345 346 2.202676 GAGAGTTCGGCCGCTCAG 60.203 66.667 27.57 1.96 34.39 3.35
346 347 2.992114 AGAGTTCGGCCGCTCAGT 60.992 61.111 27.57 15.29 34.39 3.41
347 348 2.048127 GAGTTCGGCCGCTCAGTT 60.048 61.111 23.51 1.73 0.00 3.16
348 349 1.668151 GAGTTCGGCCGCTCAGTTT 60.668 57.895 23.51 0.49 0.00 2.66
349 350 1.627550 GAGTTCGGCCGCTCAGTTTC 61.628 60.000 23.51 7.05 0.00 2.78
350 351 2.736995 TTCGGCCGCTCAGTTTCG 60.737 61.111 23.51 0.00 0.00 3.46
353 354 2.125673 GGCCGCTCAGTTTCGCTA 60.126 61.111 0.00 0.00 0.00 4.26
354 355 1.740296 GGCCGCTCAGTTTCGCTAA 60.740 57.895 0.00 0.00 0.00 3.09
355 356 1.090052 GGCCGCTCAGTTTCGCTAAT 61.090 55.000 0.00 0.00 0.00 1.73
356 357 0.727398 GCCGCTCAGTTTCGCTAATT 59.273 50.000 0.00 0.00 0.00 1.40
357 358 1.931172 GCCGCTCAGTTTCGCTAATTA 59.069 47.619 0.00 0.00 0.00 1.40
358 359 2.033662 GCCGCTCAGTTTCGCTAATTAG 60.034 50.000 8.20 8.20 0.00 1.73
359 360 3.187700 CCGCTCAGTTTCGCTAATTAGT 58.812 45.455 13.91 0.00 0.00 2.24
360 361 3.000322 CCGCTCAGTTTCGCTAATTAGTG 60.000 47.826 18.18 18.18 35.21 2.74
361 362 3.612860 CGCTCAGTTTCGCTAATTAGTGT 59.387 43.478 22.16 3.85 35.41 3.55
362 363 4.490959 CGCTCAGTTTCGCTAATTAGTGTG 60.491 45.833 22.16 14.57 35.41 3.82
363 364 4.389077 GCTCAGTTTCGCTAATTAGTGTGT 59.611 41.667 22.16 6.25 35.41 3.72
364 365 5.575606 GCTCAGTTTCGCTAATTAGTGTGTA 59.424 40.000 22.16 9.25 35.41 2.90
365 366 6.255887 GCTCAGTTTCGCTAATTAGTGTGTAT 59.744 38.462 22.16 7.95 35.41 2.29
366 367 7.520119 TCAGTTTCGCTAATTAGTGTGTATG 57.480 36.000 22.16 16.97 35.41 2.39
367 368 7.094631 TCAGTTTCGCTAATTAGTGTGTATGT 58.905 34.615 22.16 4.77 35.41 2.29
368 369 8.245491 TCAGTTTCGCTAATTAGTGTGTATGTA 58.755 33.333 22.16 2.18 35.41 2.29
369 370 8.318876 CAGTTTCGCTAATTAGTGTGTATGTAC 58.681 37.037 22.16 12.11 35.41 2.90
370 371 8.248945 AGTTTCGCTAATTAGTGTGTATGTACT 58.751 33.333 22.16 13.62 35.41 2.73
371 372 8.866956 GTTTCGCTAATTAGTGTGTATGTACTT 58.133 33.333 22.16 0.00 35.41 2.24
372 373 8.991243 TTCGCTAATTAGTGTGTATGTACTTT 57.009 30.769 22.16 0.00 35.41 2.66
373 374 8.991243 TCGCTAATTAGTGTGTATGTACTTTT 57.009 30.769 22.16 0.00 35.41 2.27
374 375 9.426837 TCGCTAATTAGTGTGTATGTACTTTTT 57.573 29.630 22.16 0.00 35.41 1.94
392 393 9.914131 GTACTTTTTAGAATTCAGGCAGAAAAT 57.086 29.630 8.44 0.00 40.22 1.82
401 402 8.186821 AGAATTCAGGCAGAAAATTTAGAATCG 58.813 33.333 8.44 0.00 40.22 3.34
438 439 5.046304 AGACCAGATTACATTACAGCACACT 60.046 40.000 0.00 0.00 0.00 3.55
479 480 3.464053 CGCGCGATCTCTTTATCATTTG 58.536 45.455 28.94 0.00 0.00 2.32
730 744 1.302383 AAAATCATTCACCGCGCCGA 61.302 50.000 0.00 0.00 0.00 5.54
746 760 0.652592 CCGATCATCGCCAGAACAAC 59.347 55.000 0.00 0.00 38.82 3.32
1132 1164 3.664025 CTGAAGGCGTGGATGCGGA 62.664 63.158 0.00 0.00 35.06 5.54
1269 1301 0.389166 GACGTGACAGCAAGGAGGAG 60.389 60.000 0.00 0.00 0.00 3.69
1443 1488 4.436998 GAGCAGTACGTGGCGGCT 62.437 66.667 16.33 16.33 39.89 5.52
1554 1599 2.247358 GCAACAAAGAAGGGAATGGGA 58.753 47.619 0.00 0.00 0.00 4.37
2100 2163 3.756727 GTCGTCTCGGTGTCCCCC 61.757 72.222 0.00 0.00 0.00 5.40
2191 2266 1.658686 GACGTGGAGCATCGAGGAGT 61.659 60.000 0.00 0.00 34.37 3.85
2220 2295 4.740822 ATTGCGGGGCTGTCCACC 62.741 66.667 0.00 0.00 37.22 4.61
2230 2305 1.668294 CTGTCCACCGAGTGCTTCT 59.332 57.895 0.00 0.00 31.34 2.85
2251 2326 1.847968 CCTCCCAGGGACCTTGTGT 60.848 63.158 3.01 0.00 0.00 3.72
2259 2334 1.228657 GGGACCTTGTGTTCAGCGAC 61.229 60.000 0.00 0.00 0.00 5.19
2498 2594 4.152647 AGATGAGATGGAGCCGTATGTAA 58.847 43.478 0.00 0.00 0.00 2.41
2557 2653 4.101790 CGCGCCCGTCAGCAAATT 62.102 61.111 0.00 0.00 0.00 1.82
2558 2654 2.258286 GCGCCCGTCAGCAAATTT 59.742 55.556 0.00 0.00 0.00 1.82
2559 2655 1.504446 GCGCCCGTCAGCAAATTTA 59.496 52.632 0.00 0.00 0.00 1.40
2560 2656 0.100503 GCGCCCGTCAGCAAATTTAT 59.899 50.000 0.00 0.00 0.00 1.40
2561 2657 1.469079 GCGCCCGTCAGCAAATTTATT 60.469 47.619 0.00 0.00 0.00 1.40
2562 2658 2.874849 CGCCCGTCAGCAAATTTATTT 58.125 42.857 0.00 0.00 0.00 1.40
2563 2659 3.732471 GCGCCCGTCAGCAAATTTATTTA 60.732 43.478 0.00 0.00 0.00 1.40
2564 2660 4.606961 CGCCCGTCAGCAAATTTATTTAT 58.393 39.130 0.00 0.00 0.00 1.40
2565 2661 5.040635 CGCCCGTCAGCAAATTTATTTATT 58.959 37.500 0.00 0.00 0.00 1.40
2566 2662 5.518487 CGCCCGTCAGCAAATTTATTTATTT 59.482 36.000 0.00 0.00 0.00 1.40
2567 2663 6.035542 CGCCCGTCAGCAAATTTATTTATTTT 59.964 34.615 0.00 0.00 0.00 1.82
2568 2664 7.412455 CGCCCGTCAGCAAATTTATTTATTTTT 60.412 33.333 0.00 0.00 0.00 1.94
2569 2665 7.691877 GCCCGTCAGCAAATTTATTTATTTTTG 59.308 33.333 0.00 0.00 33.32 2.44
2570 2666 8.930760 CCCGTCAGCAAATTTATTTATTTTTGA 58.069 29.630 0.00 0.00 32.17 2.69
2571 2667 9.956797 CCGTCAGCAAATTTATTTATTTTTGAG 57.043 29.630 0.00 0.00 32.17 3.02
2572 2668 9.956797 CGTCAGCAAATTTATTTATTTTTGAGG 57.043 29.630 0.00 0.00 32.17 3.86
2577 2673 9.753669 GCAAATTTATTTATTTTTGAGGTTCCG 57.246 29.630 0.00 0.00 32.17 4.30
2801 2897 3.249559 GTGTGAGTTGGAGCAGAAGAAAG 59.750 47.826 0.00 0.00 0.00 2.62
2882 3065 1.061799 CGCAGAGCACAAAATGTCGC 61.062 55.000 0.00 0.00 0.00 5.19
2892 3147 1.265635 CAAAATGTCGCCAAGGAACGA 59.734 47.619 0.00 0.00 35.62 3.85
2916 3171 1.374758 GGACAGCAGGAACCAGTCG 60.375 63.158 0.00 0.00 0.00 4.18
2919 3174 1.079543 CAGCAGGAACCAGTCGGAG 60.080 63.158 0.00 0.00 35.59 4.63
2921 3176 2.125912 CAGGAACCAGTCGGAGCG 60.126 66.667 0.00 0.00 35.59 5.03
2925 3180 2.600769 AACCAGTCGGAGCGGAGT 60.601 61.111 0.00 0.00 35.59 3.85
2926 3181 2.156051 GAACCAGTCGGAGCGGAGTT 62.156 60.000 0.00 0.00 35.59 3.01
2927 3182 2.156051 AACCAGTCGGAGCGGAGTTC 62.156 60.000 0.00 0.00 36.88 3.01
2928 3183 2.636412 CCAGTCGGAGCGGAGTTCA 61.636 63.158 0.00 0.00 40.41 3.18
2929 3184 1.513158 CAGTCGGAGCGGAGTTCAT 59.487 57.895 0.00 0.00 40.41 2.57
2931 3186 0.965866 AGTCGGAGCGGAGTTCATCA 60.966 55.000 0.00 0.00 40.41 3.07
2944 3199 3.373830 AGTTCATCAGAAGGAGAGGAGG 58.626 50.000 0.00 0.00 33.63 4.30
2961 3216 0.678048 AGGAACCGAGCAATGAAGGC 60.678 55.000 0.00 0.00 0.00 4.35
2963 3218 1.982073 GAACCGAGCAATGAAGGCGG 61.982 60.000 0.00 0.00 46.83 6.13
2981 3263 2.203280 CGCCACAAGACCAACCCA 60.203 61.111 0.00 0.00 0.00 4.51
3011 3293 1.226547 CAGAGACCGAAGCTCGCTC 60.227 63.158 0.00 0.00 38.82 5.03
3018 3300 1.293924 CCGAAGCTCGCTCAAATCAT 58.706 50.000 0.00 0.00 38.82 2.45
3063 3345 1.301479 GGTTCCACCGAGACGCTTT 60.301 57.895 0.00 0.00 0.00 3.51
3113 3415 0.610174 TCAAAGCTGGCAGATCTCGT 59.390 50.000 20.86 0.00 0.00 4.18
3119 3421 1.393603 CTGGCAGATCTCGTGTAGGA 58.606 55.000 9.42 0.00 0.00 2.94
3128 3430 1.375098 CTCGTGTAGGAGGTCCCGAC 61.375 65.000 0.00 0.00 40.50 4.79
3173 3475 7.836842 GGTAACAAGGGATTCAATTGTATTGT 58.163 34.615 5.13 0.97 36.18 2.71
3186 3488 8.506168 TCAATTGTATTGTATCCAAGGAGTTC 57.494 34.615 5.13 0.00 33.17 3.01
3187 3489 7.279981 TCAATTGTATTGTATCCAAGGAGTTCG 59.720 37.037 5.13 0.00 33.17 3.95
3189 3491 6.045072 TGTATTGTATCCAAGGAGTTCGTT 57.955 37.500 0.00 0.00 33.17 3.85
3230 3532 6.705782 CGATAAGTACATCGTCATTTTGCTT 58.294 36.000 7.28 0.00 42.22 3.91
3275 3577 4.585879 GGTTATCCTTAGCCACAAAGTGA 58.414 43.478 0.00 0.00 35.23 3.41
3454 3758 8.806429 TGAAATCTCTAATAACTCATTTGGCA 57.194 30.769 0.00 0.00 0.00 4.92
3455 3759 8.677300 TGAAATCTCTAATAACTCATTTGGCAC 58.323 33.333 0.00 0.00 0.00 5.01
3456 3760 7.573968 AATCTCTAATAACTCATTTGGCACC 57.426 36.000 0.00 0.00 0.00 5.01
3457 3761 5.437060 TCTCTAATAACTCATTTGGCACCC 58.563 41.667 0.00 0.00 0.00 4.61
3458 3762 5.045213 TCTCTAATAACTCATTTGGCACCCA 60.045 40.000 0.00 0.00 0.00 4.51
3459 3763 5.575157 TCTAATAACTCATTTGGCACCCAA 58.425 37.500 0.00 0.00 42.29 4.12
3468 3772 3.922171 TTTGGCACCCAAACTTTCATT 57.078 38.095 5.37 0.00 46.92 2.57
3469 3773 3.922171 TTGGCACCCAAACTTTCATTT 57.078 38.095 0.00 0.00 40.92 2.32
3470 3774 3.467374 TGGCACCCAAACTTTCATTTC 57.533 42.857 0.00 0.00 0.00 2.17
3471 3775 2.768527 TGGCACCCAAACTTTCATTTCA 59.231 40.909 0.00 0.00 0.00 2.69
3472 3776 3.390639 TGGCACCCAAACTTTCATTTCAT 59.609 39.130 0.00 0.00 0.00 2.57
3473 3777 4.141528 TGGCACCCAAACTTTCATTTCATT 60.142 37.500 0.00 0.00 0.00 2.57
3474 3778 4.821260 GGCACCCAAACTTTCATTTCATTT 59.179 37.500 0.00 0.00 0.00 2.32
3475 3779 5.277925 GGCACCCAAACTTTCATTTCATTTG 60.278 40.000 0.00 0.00 0.00 2.32
3476 3780 5.277925 GCACCCAAACTTTCATTTCATTTGG 60.278 40.000 7.01 7.01 45.86 3.28
3477 3781 5.821995 CACCCAAACTTTCATTTCATTTGGT 59.178 36.000 11.87 0.00 45.16 3.67
3478 3782 5.821995 ACCCAAACTTTCATTTCATTTGGTG 59.178 36.000 11.87 7.00 45.16 4.17
3479 3783 5.239087 CCCAAACTTTCATTTCATTTGGTGG 59.761 40.000 11.87 0.00 45.16 4.61
3480 3784 6.054295 CCAAACTTTCATTTCATTTGGTGGA 58.946 36.000 5.99 0.00 42.81 4.02
3481 3785 6.541641 CCAAACTTTCATTTCATTTGGTGGAA 59.458 34.615 5.99 0.00 42.81 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.971321 GCATTATGCAATTTTAGTACTGAATGG 58.029 33.333 12.80 4.88 44.26 3.16
20 21 6.075415 CGTGCAATTTTAGTACTGCATTATGC 60.075 38.462 10.65 10.65 45.77 3.14
21 22 7.186128 TCGTGCAATTTTAGTACTGCATTATG 58.814 34.615 5.39 0.00 45.77 1.90
22 23 7.315247 TCGTGCAATTTTAGTACTGCATTAT 57.685 32.000 5.39 0.00 45.77 1.28
23 24 6.729391 TCGTGCAATTTTAGTACTGCATTA 57.271 33.333 5.39 0.00 45.77 1.90
24 25 5.621197 TCGTGCAATTTTAGTACTGCATT 57.379 34.783 5.39 0.00 45.77 3.56
25 26 5.818136 ATCGTGCAATTTTAGTACTGCAT 57.182 34.783 5.39 0.00 45.77 3.96
26 27 6.918892 ATATCGTGCAATTTTAGTACTGCA 57.081 33.333 5.39 3.12 42.28 4.41
27 28 7.010023 GCTATATCGTGCAATTTTAGTACTGC 58.990 38.462 5.39 0.04 35.32 4.40
28 29 8.072238 TGCTATATCGTGCAATTTTAGTACTG 57.928 34.615 5.39 0.00 36.15 2.74
29 30 8.833231 ATGCTATATCGTGCAATTTTAGTACT 57.167 30.769 0.00 0.00 42.74 2.73
30 31 8.708742 TGATGCTATATCGTGCAATTTTAGTAC 58.291 33.333 0.00 0.00 42.74 2.73
31 32 8.825667 TGATGCTATATCGTGCAATTTTAGTA 57.174 30.769 0.00 0.00 42.74 1.82
32 33 7.728847 TGATGCTATATCGTGCAATTTTAGT 57.271 32.000 0.00 0.00 42.74 2.24
33 34 9.110617 CTTTGATGCTATATCGTGCAATTTTAG 57.889 33.333 0.00 0.00 42.74 1.85
34 35 8.620416 ACTTTGATGCTATATCGTGCAATTTTA 58.380 29.630 0.00 0.00 42.74 1.52
35 36 7.483307 ACTTTGATGCTATATCGTGCAATTTT 58.517 30.769 0.00 0.00 42.74 1.82
36 37 7.031226 ACTTTGATGCTATATCGTGCAATTT 57.969 32.000 0.00 0.00 42.74 1.82
37 38 6.624352 ACTTTGATGCTATATCGTGCAATT 57.376 33.333 0.00 0.00 42.74 2.32
38 39 6.432936 CAACTTTGATGCTATATCGTGCAAT 58.567 36.000 0.00 0.00 42.74 3.56
39 40 5.220835 CCAACTTTGATGCTATATCGTGCAA 60.221 40.000 0.00 0.00 42.74 4.08
40 41 4.273235 CCAACTTTGATGCTATATCGTGCA 59.727 41.667 0.00 0.00 43.67 4.57
41 42 4.776743 CCAACTTTGATGCTATATCGTGC 58.223 43.478 0.00 0.00 0.00 5.34
42 43 4.273235 TGCCAACTTTGATGCTATATCGTG 59.727 41.667 0.00 0.00 0.00 4.35
43 44 4.450976 TGCCAACTTTGATGCTATATCGT 58.549 39.130 0.00 0.00 0.00 3.73
44 45 5.179929 TGATGCCAACTTTGATGCTATATCG 59.820 40.000 0.00 0.00 0.00 2.92
45 46 6.564709 TGATGCCAACTTTGATGCTATATC 57.435 37.500 0.00 0.00 0.00 1.63
46 47 6.964807 TTGATGCCAACTTTGATGCTATAT 57.035 33.333 0.00 0.00 0.00 0.86
47 48 6.964807 ATTGATGCCAACTTTGATGCTATA 57.035 33.333 0.00 0.00 34.72 1.31
48 49 5.864418 ATTGATGCCAACTTTGATGCTAT 57.136 34.783 0.00 0.00 34.72 2.97
49 50 5.664294 AATTGATGCCAACTTTGATGCTA 57.336 34.783 0.00 0.00 34.72 3.49
50 51 4.546829 AATTGATGCCAACTTTGATGCT 57.453 36.364 0.00 0.00 34.72 3.79
51 52 5.616488 AAAATTGATGCCAACTTTGATGC 57.384 34.783 0.00 0.00 31.45 3.91
72 73 8.673711 CCTCCATGAGTATATTTTGACGAAAAA 58.326 33.333 0.00 0.00 41.88 1.94
73 74 8.044309 TCCTCCATGAGTATATTTTGACGAAAA 58.956 33.333 0.00 0.00 35.52 2.29
74 75 7.561251 TCCTCCATGAGTATATTTTGACGAAA 58.439 34.615 0.00 0.00 0.00 3.46
75 76 7.119709 TCCTCCATGAGTATATTTTGACGAA 57.880 36.000 0.00 0.00 0.00 3.85
76 77 6.724893 TCCTCCATGAGTATATTTTGACGA 57.275 37.500 0.00 0.00 0.00 4.20
77 78 7.382110 AGATCCTCCATGAGTATATTTTGACG 58.618 38.462 0.00 0.00 0.00 4.35
78 79 9.868277 CTAGATCCTCCATGAGTATATTTTGAC 57.132 37.037 0.00 0.00 0.00 3.18
79 80 9.607333 ACTAGATCCTCCATGAGTATATTTTGA 57.393 33.333 0.00 0.00 0.00 2.69
83 84 9.607333 TGAAACTAGATCCTCCATGAGTATATT 57.393 33.333 0.00 0.00 0.00 1.28
84 85 9.607333 TTGAAACTAGATCCTCCATGAGTATAT 57.393 33.333 0.00 0.00 0.00 0.86
85 86 9.434275 TTTGAAACTAGATCCTCCATGAGTATA 57.566 33.333 0.00 0.00 0.00 1.47
86 87 7.921041 TTGAAACTAGATCCTCCATGAGTAT 57.079 36.000 0.00 0.00 0.00 2.12
87 88 7.619698 TCTTTGAAACTAGATCCTCCATGAGTA 59.380 37.037 0.00 0.00 0.00 2.59
88 89 6.441924 TCTTTGAAACTAGATCCTCCATGAGT 59.558 38.462 0.00 0.00 0.00 3.41
89 90 6.882656 TCTTTGAAACTAGATCCTCCATGAG 58.117 40.000 0.00 0.00 0.00 2.90
90 91 6.874278 TCTTTGAAACTAGATCCTCCATGA 57.126 37.500 0.00 0.00 0.00 3.07
91 92 8.517062 AAATCTTTGAAACTAGATCCTCCATG 57.483 34.615 0.00 0.00 30.95 3.66
92 93 7.497249 CGAAATCTTTGAAACTAGATCCTCCAT 59.503 37.037 0.00 0.00 30.95 3.41
93 94 6.818644 CGAAATCTTTGAAACTAGATCCTCCA 59.181 38.462 0.00 0.00 30.95 3.86
94 95 6.238239 GCGAAATCTTTGAAACTAGATCCTCC 60.238 42.308 0.00 0.00 30.95 4.30
95 96 6.238239 GGCGAAATCTTTGAAACTAGATCCTC 60.238 42.308 0.00 0.00 30.95 3.71
96 97 5.586643 GGCGAAATCTTTGAAACTAGATCCT 59.413 40.000 0.00 0.00 30.95 3.24
97 98 5.502544 CGGCGAAATCTTTGAAACTAGATCC 60.503 44.000 0.00 0.00 30.95 3.36
98 99 5.493735 CGGCGAAATCTTTGAAACTAGATC 58.506 41.667 0.00 0.00 30.95 2.75
99 100 4.201822 GCGGCGAAATCTTTGAAACTAGAT 60.202 41.667 12.98 0.00 32.62 1.98
100 101 3.124636 GCGGCGAAATCTTTGAAACTAGA 59.875 43.478 12.98 0.00 0.00 2.43
101 102 3.417185 GCGGCGAAATCTTTGAAACTAG 58.583 45.455 12.98 0.00 0.00 2.57
102 103 2.159761 CGCGGCGAAATCTTTGAAACTA 60.160 45.455 19.16 0.00 0.00 2.24
103 104 1.399727 CGCGGCGAAATCTTTGAAACT 60.400 47.619 19.16 0.00 0.00 2.66
104 105 0.974836 CGCGGCGAAATCTTTGAAAC 59.025 50.000 19.16 0.00 0.00 2.78
105 106 0.869068 TCGCGGCGAAATCTTTGAAA 59.131 45.000 24.33 0.00 31.06 2.69
106 107 0.442310 CTCGCGGCGAAATCTTTGAA 59.558 50.000 26.28 0.00 34.74 2.69
107 108 1.358725 CCTCGCGGCGAAATCTTTGA 61.359 55.000 26.28 0.11 34.74 2.69
108 109 1.060937 CCTCGCGGCGAAATCTTTG 59.939 57.895 26.28 12.21 34.74 2.77
109 110 0.672401 TTCCTCGCGGCGAAATCTTT 60.672 50.000 26.28 0.00 34.74 2.52
110 111 0.462047 ATTCCTCGCGGCGAAATCTT 60.462 50.000 26.28 7.54 34.74 2.40
111 112 0.876342 GATTCCTCGCGGCGAAATCT 60.876 55.000 28.89 16.16 34.74 2.40
112 113 1.565106 GATTCCTCGCGGCGAAATC 59.435 57.895 25.07 25.07 34.74 2.17
113 114 1.887707 GGATTCCTCGCGGCGAAAT 60.888 57.895 26.28 22.24 34.74 2.17
114 115 2.510691 GGATTCCTCGCGGCGAAA 60.511 61.111 26.28 18.46 34.74 3.46
115 116 3.716539 CTGGATTCCTCGCGGCGAA 62.717 63.158 26.28 12.28 34.74 4.70
116 117 4.207281 CTGGATTCCTCGCGGCGA 62.207 66.667 24.84 24.84 0.00 5.54
120 121 4.514577 ACCGCTGGATTCCTCGCG 62.515 66.667 23.85 23.85 41.20 5.87
121 122 2.852495 TTCACCGCTGGATTCCTCGC 62.852 60.000 3.95 5.93 0.00 5.03
122 123 0.807667 CTTCACCGCTGGATTCCTCG 60.808 60.000 3.95 7.51 0.00 4.63
123 124 0.537188 TCTTCACCGCTGGATTCCTC 59.463 55.000 3.95 0.00 0.00 3.71
124 125 1.134280 CATCTTCACCGCTGGATTCCT 60.134 52.381 3.95 0.00 0.00 3.36
125 126 1.134401 TCATCTTCACCGCTGGATTCC 60.134 52.381 0.00 0.00 0.00 3.01
126 127 2.315925 TCATCTTCACCGCTGGATTC 57.684 50.000 1.50 0.00 0.00 2.52
127 128 2.787473 TTCATCTTCACCGCTGGATT 57.213 45.000 1.50 0.00 0.00 3.01
128 129 2.437281 AGATTCATCTTCACCGCTGGAT 59.563 45.455 1.50 0.00 31.97 3.41
129 130 1.833630 AGATTCATCTTCACCGCTGGA 59.166 47.619 1.50 0.00 31.97 3.86
130 131 1.938577 CAGATTCATCTTCACCGCTGG 59.061 52.381 0.00 0.00 34.22 4.85
131 132 2.897436 TCAGATTCATCTTCACCGCTG 58.103 47.619 0.00 0.00 34.22 5.18
132 133 3.616956 TTCAGATTCATCTTCACCGCT 57.383 42.857 0.00 0.00 34.22 5.52
133 134 4.889832 AATTCAGATTCATCTTCACCGC 57.110 40.909 0.00 0.00 34.22 5.68
134 135 5.355071 TCCAAATTCAGATTCATCTTCACCG 59.645 40.000 0.00 0.00 34.22 4.94
135 136 6.764308 TCCAAATTCAGATTCATCTTCACC 57.236 37.500 0.00 0.00 34.22 4.02
136 137 6.696148 GCATCCAAATTCAGATTCATCTTCAC 59.304 38.462 0.00 0.00 34.22 3.18
137 138 6.378848 TGCATCCAAATTCAGATTCATCTTCA 59.621 34.615 0.00 0.00 34.22 3.02
138 139 6.696148 GTGCATCCAAATTCAGATTCATCTTC 59.304 38.462 0.00 0.00 34.22 2.87
139 140 6.570692 GTGCATCCAAATTCAGATTCATCTT 58.429 36.000 0.00 0.00 34.22 2.40
140 141 5.220989 CGTGCATCCAAATTCAGATTCATCT 60.221 40.000 0.00 0.00 37.72 2.90
141 142 4.974275 CGTGCATCCAAATTCAGATTCATC 59.026 41.667 0.00 0.00 0.00 2.92
142 143 4.202080 CCGTGCATCCAAATTCAGATTCAT 60.202 41.667 0.00 0.00 0.00 2.57
143 144 3.129113 CCGTGCATCCAAATTCAGATTCA 59.871 43.478 0.00 0.00 0.00 2.57
144 145 3.129287 ACCGTGCATCCAAATTCAGATTC 59.871 43.478 0.00 0.00 0.00 2.52
145 146 3.091545 ACCGTGCATCCAAATTCAGATT 58.908 40.909 0.00 0.00 0.00 2.40
146 147 2.726821 ACCGTGCATCCAAATTCAGAT 58.273 42.857 0.00 0.00 0.00 2.90
147 148 2.198827 ACCGTGCATCCAAATTCAGA 57.801 45.000 0.00 0.00 0.00 3.27
148 149 2.988493 CAAACCGTGCATCCAAATTCAG 59.012 45.455 0.00 0.00 0.00 3.02
149 150 2.625314 TCAAACCGTGCATCCAAATTCA 59.375 40.909 0.00 0.00 0.00 2.57
150 151 3.296322 TCAAACCGTGCATCCAAATTC 57.704 42.857 0.00 0.00 0.00 2.17
151 152 3.742433 TTCAAACCGTGCATCCAAATT 57.258 38.095 0.00 0.00 0.00 1.82
152 153 3.320541 TCTTTCAAACCGTGCATCCAAAT 59.679 39.130 0.00 0.00 0.00 2.32
153 154 2.690497 TCTTTCAAACCGTGCATCCAAA 59.310 40.909 0.00 0.00 0.00 3.28
154 155 2.302260 TCTTTCAAACCGTGCATCCAA 58.698 42.857 0.00 0.00 0.00 3.53
155 156 1.974265 TCTTTCAAACCGTGCATCCA 58.026 45.000 0.00 0.00 0.00 3.41
156 157 4.335315 TCATATCTTTCAAACCGTGCATCC 59.665 41.667 0.00 0.00 0.00 3.51
157 158 5.065218 AGTCATATCTTTCAAACCGTGCATC 59.935 40.000 0.00 0.00 0.00 3.91
158 159 4.943705 AGTCATATCTTTCAAACCGTGCAT 59.056 37.500 0.00 0.00 0.00 3.96
159 160 4.323417 AGTCATATCTTTCAAACCGTGCA 58.677 39.130 0.00 0.00 0.00 4.57
160 161 4.946784 AGTCATATCTTTCAAACCGTGC 57.053 40.909 0.00 0.00 0.00 5.34
161 162 9.672086 TTAAAAAGTCATATCTTTCAAACCGTG 57.328 29.630 0.00 0.00 36.75 4.94
190 191 6.655003 TGTGCACTTATTTTGGGTTTTCAAAA 59.345 30.769 19.41 5.42 46.42 2.44
191 192 6.173339 TGTGCACTTATTTTGGGTTTTCAAA 58.827 32.000 19.41 0.00 35.15 2.69
192 193 5.734720 TGTGCACTTATTTTGGGTTTTCAA 58.265 33.333 19.41 0.00 0.00 2.69
193 194 5.344743 TGTGCACTTATTTTGGGTTTTCA 57.655 34.783 19.41 0.00 0.00 2.69
194 195 5.334028 GCATGTGCACTTATTTTGGGTTTTC 60.334 40.000 19.41 0.00 41.59 2.29
195 196 4.514816 GCATGTGCACTTATTTTGGGTTTT 59.485 37.500 19.41 0.00 41.59 2.43
196 197 4.064388 GCATGTGCACTTATTTTGGGTTT 58.936 39.130 19.41 0.00 41.59 3.27
197 198 3.663025 GCATGTGCACTTATTTTGGGTT 58.337 40.909 19.41 0.00 41.59 4.11
198 199 3.317603 GCATGTGCACTTATTTTGGGT 57.682 42.857 19.41 0.00 41.59 4.51
211 212 0.961857 TCTGATGGGTGTGCATGTGC 60.962 55.000 0.00 0.00 42.50 4.57
212 213 0.806868 GTCTGATGGGTGTGCATGTG 59.193 55.000 0.00 0.00 0.00 3.21
213 214 0.401356 TGTCTGATGGGTGTGCATGT 59.599 50.000 0.00 0.00 0.00 3.21
214 215 1.471287 CTTGTCTGATGGGTGTGCATG 59.529 52.381 0.00 0.00 0.00 4.06
215 216 1.615116 CCTTGTCTGATGGGTGTGCAT 60.615 52.381 0.00 0.00 0.00 3.96
216 217 0.250858 CCTTGTCTGATGGGTGTGCA 60.251 55.000 0.00 0.00 0.00 4.57
217 218 0.036732 TCCTTGTCTGATGGGTGTGC 59.963 55.000 0.00 0.00 0.00 4.57
218 219 2.566833 TTCCTTGTCTGATGGGTGTG 57.433 50.000 0.00 0.00 0.00 3.82
219 220 2.915604 AGATTCCTTGTCTGATGGGTGT 59.084 45.455 0.00 0.00 0.00 4.16
220 221 3.199508 AGAGATTCCTTGTCTGATGGGTG 59.800 47.826 0.00 0.00 0.00 4.61
221 222 3.458831 AGAGATTCCTTGTCTGATGGGT 58.541 45.455 0.00 0.00 0.00 4.51
222 223 4.197750 CAAGAGATTCCTTGTCTGATGGG 58.802 47.826 0.00 0.00 38.87 4.00
223 224 3.626670 GCAAGAGATTCCTTGTCTGATGG 59.373 47.826 13.14 0.00 43.96 3.51
224 225 4.515361 AGCAAGAGATTCCTTGTCTGATG 58.485 43.478 13.14 0.00 43.96 3.07
225 226 4.224594 TGAGCAAGAGATTCCTTGTCTGAT 59.775 41.667 13.14 0.00 43.96 2.90
226 227 3.580022 TGAGCAAGAGATTCCTTGTCTGA 59.420 43.478 13.14 5.97 43.96 3.27
227 228 3.683822 GTGAGCAAGAGATTCCTTGTCTG 59.316 47.826 13.14 0.00 43.96 3.51
228 229 3.326006 TGTGAGCAAGAGATTCCTTGTCT 59.674 43.478 13.14 11.12 43.96 3.41
229 230 3.668447 TGTGAGCAAGAGATTCCTTGTC 58.332 45.455 13.14 10.63 43.96 3.18
230 231 3.777106 TGTGAGCAAGAGATTCCTTGT 57.223 42.857 13.14 4.45 43.96 3.16
231 232 4.259356 TCATGTGAGCAAGAGATTCCTTG 58.741 43.478 9.32 9.32 44.67 3.61
232 233 4.564782 TCATGTGAGCAAGAGATTCCTT 57.435 40.909 0.00 0.00 0.00 3.36
233 234 4.564782 TTCATGTGAGCAAGAGATTCCT 57.435 40.909 0.00 0.00 0.00 3.36
234 235 6.485984 ACATATTCATGTGAGCAAGAGATTCC 59.514 38.462 0.00 0.00 43.89 3.01
235 236 7.226128 TGACATATTCATGTGAGCAAGAGATTC 59.774 37.037 0.00 0.00 45.58 2.52
236 237 7.052248 TGACATATTCATGTGAGCAAGAGATT 58.948 34.615 0.00 0.00 45.58 2.40
237 238 6.589135 TGACATATTCATGTGAGCAAGAGAT 58.411 36.000 0.00 0.00 45.58 2.75
238 239 5.981174 TGACATATTCATGTGAGCAAGAGA 58.019 37.500 0.00 0.00 45.58 3.10
239 240 6.862711 ATGACATATTCATGTGAGCAAGAG 57.137 37.500 0.00 0.00 45.58 2.85
240 241 7.989170 AGTAATGACATATTCATGTGAGCAAGA 59.011 33.333 0.00 0.00 44.86 3.02
241 242 8.151141 AGTAATGACATATTCATGTGAGCAAG 57.849 34.615 0.00 0.00 44.86 4.01
242 243 9.783081 ATAGTAATGACATATTCATGTGAGCAA 57.217 29.630 0.00 0.00 44.86 3.91
243 244 9.428097 GATAGTAATGACATATTCATGTGAGCA 57.572 33.333 0.00 0.00 44.86 4.26
244 245 8.877779 GGATAGTAATGACATATTCATGTGAGC 58.122 37.037 0.00 0.00 44.86 4.26
245 246 9.080915 CGGATAGTAATGACATATTCATGTGAG 57.919 37.037 0.00 0.00 44.86 3.51
246 247 7.545615 GCGGATAGTAATGACATATTCATGTGA 59.454 37.037 0.00 0.00 44.86 3.58
247 248 7.201556 GGCGGATAGTAATGACATATTCATGTG 60.202 40.741 0.00 0.00 44.86 3.21
248 249 6.818644 GGCGGATAGTAATGACATATTCATGT 59.181 38.462 0.00 0.00 44.86 3.21
249 250 6.818142 TGGCGGATAGTAATGACATATTCATG 59.182 38.462 0.00 0.00 44.86 3.07
251 252 6.163476 GTGGCGGATAGTAATGACATATTCA 58.837 40.000 0.00 0.00 39.11 2.57
252 253 5.288712 CGTGGCGGATAGTAATGACATATTC 59.711 44.000 0.00 0.00 0.00 1.75
253 254 5.168569 CGTGGCGGATAGTAATGACATATT 58.831 41.667 0.00 0.00 0.00 1.28
254 255 4.219944 ACGTGGCGGATAGTAATGACATAT 59.780 41.667 0.00 0.00 0.00 1.78
255 256 3.570975 ACGTGGCGGATAGTAATGACATA 59.429 43.478 0.00 0.00 0.00 2.29
256 257 2.364324 ACGTGGCGGATAGTAATGACAT 59.636 45.455 0.00 0.00 0.00 3.06
257 258 1.752498 ACGTGGCGGATAGTAATGACA 59.248 47.619 0.00 0.00 0.00 3.58
258 259 2.223641 TGACGTGGCGGATAGTAATGAC 60.224 50.000 0.00 0.00 0.00 3.06
259 260 2.025898 TGACGTGGCGGATAGTAATGA 58.974 47.619 0.00 0.00 0.00 2.57
260 261 2.502213 TGACGTGGCGGATAGTAATG 57.498 50.000 0.00 0.00 0.00 1.90
261 262 2.866460 GCATGACGTGGCGGATAGTAAT 60.866 50.000 0.00 0.00 0.00 1.89
262 263 1.537348 GCATGACGTGGCGGATAGTAA 60.537 52.381 0.00 0.00 0.00 2.24
263 264 0.031585 GCATGACGTGGCGGATAGTA 59.968 55.000 0.00 0.00 0.00 1.82
264 265 1.227263 GCATGACGTGGCGGATAGT 60.227 57.895 0.00 0.00 0.00 2.12
265 266 0.601046 ATGCATGACGTGGCGGATAG 60.601 55.000 0.00 0.00 0.00 2.08
266 267 0.676736 TATGCATGACGTGGCGGATA 59.323 50.000 10.16 0.00 0.00 2.59
267 268 0.179059 TTATGCATGACGTGGCGGAT 60.179 50.000 10.16 0.00 0.00 4.18
268 269 0.391793 TTTATGCATGACGTGGCGGA 60.392 50.000 10.16 0.00 0.00 5.54
269 270 0.027979 CTTTATGCATGACGTGGCGG 59.972 55.000 10.16 0.00 0.00 6.13
270 271 1.006086 TCTTTATGCATGACGTGGCG 58.994 50.000 10.16 0.00 0.00 5.69
271 272 1.737236 TGTCTTTATGCATGACGTGGC 59.263 47.619 10.16 0.00 33.11 5.01
272 273 4.418013 TTTGTCTTTATGCATGACGTGG 57.582 40.909 10.16 0.00 33.11 4.94
273 274 6.932901 AATTTTGTCTTTATGCATGACGTG 57.067 33.333 10.16 0.00 33.11 4.49
274 275 7.945033 AAAATTTTGTCTTTATGCATGACGT 57.055 28.000 10.16 0.00 33.11 4.34
275 276 9.340695 TCTAAAATTTTGTCTTTATGCATGACG 57.659 29.630 13.76 0.00 33.11 4.35
280 281 9.809096 TGTTGTCTAAAATTTTGTCTTTATGCA 57.191 25.926 13.76 0.00 0.00 3.96
287 288 8.603181 GCAATGTTGTTGTCTAAAATTTTGTCT 58.397 29.630 13.76 0.00 0.00 3.41
288 289 8.386606 TGCAATGTTGTTGTCTAAAATTTTGTC 58.613 29.630 13.76 4.62 0.00 3.18
289 290 8.261492 TGCAATGTTGTTGTCTAAAATTTTGT 57.739 26.923 13.76 0.00 0.00 2.83
290 291 9.160576 CATGCAATGTTGTTGTCTAAAATTTTG 57.839 29.630 13.76 4.15 40.20 2.44
314 315 3.497262 CGAACTCTCATACATGCATGCAT 59.503 43.478 27.46 27.46 37.08 3.96
315 316 2.867975 CGAACTCTCATACATGCATGCA 59.132 45.455 26.53 25.04 0.00 3.96
316 317 2.222678 CCGAACTCTCATACATGCATGC 59.777 50.000 26.53 11.82 0.00 4.06
317 318 2.222678 GCCGAACTCTCATACATGCATG 59.777 50.000 25.09 25.09 0.00 4.06
318 319 2.487934 GCCGAACTCTCATACATGCAT 58.512 47.619 0.00 0.00 0.00 3.96
319 320 1.473257 GGCCGAACTCTCATACATGCA 60.473 52.381 0.00 0.00 0.00 3.96
320 321 1.221414 GGCCGAACTCTCATACATGC 58.779 55.000 0.00 0.00 0.00 4.06
321 322 1.491670 CGGCCGAACTCTCATACATG 58.508 55.000 24.07 0.00 0.00 3.21
322 323 0.249489 GCGGCCGAACTCTCATACAT 60.249 55.000 33.48 0.00 0.00 2.29
323 324 1.141019 GCGGCCGAACTCTCATACA 59.859 57.895 33.48 0.00 0.00 2.29
324 325 0.595310 GAGCGGCCGAACTCTCATAC 60.595 60.000 33.48 6.65 0.00 2.39
325 326 1.035385 TGAGCGGCCGAACTCTCATA 61.035 55.000 33.48 7.90 33.92 2.15
326 327 2.290122 CTGAGCGGCCGAACTCTCAT 62.290 60.000 33.48 2.45 35.34 2.90
327 328 2.989253 TGAGCGGCCGAACTCTCA 60.989 61.111 33.48 27.64 33.92 3.27
328 329 2.202676 CTGAGCGGCCGAACTCTC 60.203 66.667 33.48 25.26 33.92 3.20
329 330 2.100879 AAACTGAGCGGCCGAACTCT 62.101 55.000 33.48 17.24 33.92 3.24
330 331 1.627550 GAAACTGAGCGGCCGAACTC 61.628 60.000 33.48 26.41 0.00 3.01
331 332 1.668151 GAAACTGAGCGGCCGAACT 60.668 57.895 33.48 18.58 0.00 3.01
332 333 2.861006 GAAACTGAGCGGCCGAAC 59.139 61.111 33.48 21.85 0.00 3.95
333 334 2.736995 CGAAACTGAGCGGCCGAA 60.737 61.111 33.48 12.84 0.00 4.30
335 336 3.982372 TAGCGAAACTGAGCGGCCG 62.982 63.158 24.05 24.05 38.61 6.13
336 337 1.090052 ATTAGCGAAACTGAGCGGCC 61.090 55.000 0.00 0.00 38.61 6.13
337 338 0.727398 AATTAGCGAAACTGAGCGGC 59.273 50.000 0.00 0.00 38.61 6.53
338 339 3.000322 CACTAATTAGCGAAACTGAGCGG 60.000 47.826 12.54 0.00 38.61 5.52
339 340 3.612860 ACACTAATTAGCGAAACTGAGCG 59.387 43.478 12.54 0.00 38.61 5.03
340 341 4.389077 ACACACTAATTAGCGAAACTGAGC 59.611 41.667 12.54 0.00 0.00 4.26
341 342 7.275779 ACATACACACTAATTAGCGAAACTGAG 59.724 37.037 12.54 3.84 0.00 3.35
342 343 7.094631 ACATACACACTAATTAGCGAAACTGA 58.905 34.615 12.54 0.00 0.00 3.41
343 344 7.290857 ACATACACACTAATTAGCGAAACTG 57.709 36.000 12.54 4.85 0.00 3.16
344 345 8.248945 AGTACATACACACTAATTAGCGAAACT 58.751 33.333 12.54 2.11 0.00 2.66
345 346 8.403606 AGTACATACACACTAATTAGCGAAAC 57.596 34.615 12.54 0.02 0.00 2.78
346 347 8.991243 AAGTACATACACACTAATTAGCGAAA 57.009 30.769 12.54 0.00 0.00 3.46
347 348 8.991243 AAAGTACATACACACTAATTAGCGAA 57.009 30.769 12.54 0.00 0.00 4.70
348 349 8.991243 AAAAGTACATACACACTAATTAGCGA 57.009 30.769 12.54 0.00 0.00 4.93
359 360 8.726988 GCCTGAATTCTAAAAAGTACATACACA 58.273 33.333 7.05 0.00 0.00 3.72
360 361 8.726988 TGCCTGAATTCTAAAAAGTACATACAC 58.273 33.333 7.05 0.00 0.00 2.90
361 362 8.856153 TGCCTGAATTCTAAAAAGTACATACA 57.144 30.769 7.05 0.00 0.00 2.29
362 363 9.162764 TCTGCCTGAATTCTAAAAAGTACATAC 57.837 33.333 7.05 0.00 0.00 2.39
363 364 9.733556 TTCTGCCTGAATTCTAAAAAGTACATA 57.266 29.630 7.05 0.00 0.00 2.29
364 365 8.635765 TTCTGCCTGAATTCTAAAAAGTACAT 57.364 30.769 7.05 0.00 0.00 2.29
365 366 8.458573 TTTCTGCCTGAATTCTAAAAAGTACA 57.541 30.769 7.05 0.00 34.24 2.90
366 367 9.914131 ATTTTCTGCCTGAATTCTAAAAAGTAC 57.086 29.630 7.05 0.00 34.24 2.73
368 369 9.836864 AAATTTTCTGCCTGAATTCTAAAAAGT 57.163 25.926 7.05 1.97 34.24 2.66
375 376 8.186821 CGATTCTAAATTTTCTGCCTGAATTCT 58.813 33.333 7.05 0.00 34.24 2.40
376 377 7.433425 CCGATTCTAAATTTTCTGCCTGAATTC 59.567 37.037 0.00 0.00 34.24 2.17
377 378 7.122650 TCCGATTCTAAATTTTCTGCCTGAATT 59.877 33.333 0.00 0.00 34.24 2.17
378 379 6.603201 TCCGATTCTAAATTTTCTGCCTGAAT 59.397 34.615 0.00 0.00 34.24 2.57
379 380 5.943416 TCCGATTCTAAATTTTCTGCCTGAA 59.057 36.000 0.00 0.00 0.00 3.02
380 381 5.496556 TCCGATTCTAAATTTTCTGCCTGA 58.503 37.500 0.00 0.00 0.00 3.86
381 382 5.586243 TCTCCGATTCTAAATTTTCTGCCTG 59.414 40.000 0.00 0.00 0.00 4.85
382 383 5.745227 TCTCCGATTCTAAATTTTCTGCCT 58.255 37.500 0.00 0.00 0.00 4.75
383 384 5.008118 CCTCTCCGATTCTAAATTTTCTGCC 59.992 44.000 0.00 0.00 0.00 4.85
384 385 5.817816 TCCTCTCCGATTCTAAATTTTCTGC 59.182 40.000 0.00 0.00 0.00 4.26
392 393 4.286707 TGGTGATCCTCTCCGATTCTAAA 58.713 43.478 0.00 0.00 32.93 1.85
401 402 1.118838 CTGGTCTGGTGATCCTCTCC 58.881 60.000 0.00 0.00 34.23 3.71
414 415 5.046304 AGTGTGCTGTAATGTAATCTGGTCT 60.046 40.000 0.00 0.00 0.00 3.85
417 418 6.500684 AAAGTGTGCTGTAATGTAATCTGG 57.499 37.500 0.00 0.00 0.00 3.86
479 480 2.195741 ACCTAGCTTCCCCGAAAAAC 57.804 50.000 0.00 0.00 0.00 2.43
623 637 1.678970 GACAGGTCCATGGGTTGGC 60.679 63.158 13.02 6.52 46.01 4.52
730 744 2.183478 TGTGTTGTTCTGGCGATGAT 57.817 45.000 0.00 0.00 0.00 2.45
1116 1148 3.195698 GTCCGCATCCACGCCTTC 61.196 66.667 0.00 0.00 0.00 3.46
1132 1164 0.740516 TGATCGATGTGCATGTGCGT 60.741 50.000 0.54 0.00 45.83 5.24
1269 1301 1.754234 TACGGGACTTACGAGGGGC 60.754 63.158 0.00 0.00 34.93 5.80
1326 1358 1.307097 GGCTGAATGCTGATCCAGTC 58.693 55.000 0.00 0.00 42.39 3.51
1381 1426 2.930950 CTCCTGAAAACACAAGGACCA 58.069 47.619 0.00 0.00 0.00 4.02
1554 1599 0.036010 CAAATCCTCCGTGCACCTCT 60.036 55.000 12.15 0.00 0.00 3.69
1991 2054 2.184322 CCCAGTACATGCTCGCGT 59.816 61.111 5.77 0.00 0.00 6.01
2191 2266 0.958091 CCCGCAATGTTGAACTCCAA 59.042 50.000 0.00 0.00 0.00 3.53
2230 2305 2.121506 AAGGTCCCTGGGAGGCAA 60.122 61.111 17.73 0.00 32.73 4.52
2251 2326 0.756294 TGGTCTTTGGAGTCGCTGAA 59.244 50.000 0.00 0.00 0.00 3.02
2259 2334 3.121030 CGCGGCTGGTCTTTGGAG 61.121 66.667 0.00 0.00 0.00 3.86
2358 2454 1.318576 CCGGAACAAGTGCCTTCTTT 58.681 50.000 0.00 0.00 0.00 2.52
2498 2594 1.276421 CTAGTGCCTATTATGCCGCCT 59.724 52.381 0.00 0.00 0.00 5.52
2551 2647 9.753669 CGGAACCTCAAAAATAAATAAATTTGC 57.246 29.630 0.00 0.00 33.81 3.68
2555 2651 9.855021 CTGACGGAACCTCAAAAATAAATAAAT 57.145 29.630 0.00 0.00 0.00 1.40
2556 2652 7.810759 GCTGACGGAACCTCAAAAATAAATAAA 59.189 33.333 0.00 0.00 0.00 1.40
2557 2653 7.040340 TGCTGACGGAACCTCAAAAATAAATAA 60.040 33.333 0.00 0.00 0.00 1.40
2558 2654 6.431543 TGCTGACGGAACCTCAAAAATAAATA 59.568 34.615 0.00 0.00 0.00 1.40
2559 2655 5.242838 TGCTGACGGAACCTCAAAAATAAAT 59.757 36.000 0.00 0.00 0.00 1.40
2560 2656 4.580995 TGCTGACGGAACCTCAAAAATAAA 59.419 37.500 0.00 0.00 0.00 1.40
2561 2657 4.138290 TGCTGACGGAACCTCAAAAATAA 58.862 39.130 0.00 0.00 0.00 1.40
2562 2658 3.745799 TGCTGACGGAACCTCAAAAATA 58.254 40.909 0.00 0.00 0.00 1.40
2563 2659 2.582052 TGCTGACGGAACCTCAAAAAT 58.418 42.857 0.00 0.00 0.00 1.82
2564 2660 2.045561 TGCTGACGGAACCTCAAAAA 57.954 45.000 0.00 0.00 0.00 1.94
2565 2661 2.045561 TTGCTGACGGAACCTCAAAA 57.954 45.000 0.00 0.00 0.00 2.44
2566 2662 2.045561 TTTGCTGACGGAACCTCAAA 57.954 45.000 0.00 0.00 0.00 2.69
2567 2663 2.270352 ATTTGCTGACGGAACCTCAA 57.730 45.000 0.00 0.00 0.00 3.02
2568 2664 2.270352 AATTTGCTGACGGAACCTCA 57.730 45.000 0.00 0.00 0.00 3.86
2569 2665 2.552315 TCAAATTTGCTGACGGAACCTC 59.448 45.455 13.54 0.00 0.00 3.85
2570 2666 2.554032 CTCAAATTTGCTGACGGAACCT 59.446 45.455 13.54 0.00 0.00 3.50
2571 2667 2.552315 TCTCAAATTTGCTGACGGAACC 59.448 45.455 13.54 0.00 0.00 3.62
2572 2668 3.896648 TCTCAAATTTGCTGACGGAAC 57.103 42.857 13.54 0.00 0.00 3.62
2573 2669 3.820467 ACATCTCAAATTTGCTGACGGAA 59.180 39.130 13.54 0.00 0.00 4.30
2574 2670 3.411446 ACATCTCAAATTTGCTGACGGA 58.589 40.909 13.54 5.13 0.00 4.69
2575 2671 3.837213 ACATCTCAAATTTGCTGACGG 57.163 42.857 13.54 11.39 0.00 4.79
2576 2672 5.536554 AGTACATCTCAAATTTGCTGACG 57.463 39.130 13.54 8.99 0.00 4.35
2577 2673 7.602517 AGTAGTACATCTCAAATTTGCTGAC 57.397 36.000 13.54 10.00 0.00 3.51
2578 2674 7.063426 CGAAGTAGTACATCTCAAATTTGCTGA 59.937 37.037 13.54 13.45 0.00 4.26
2579 2675 7.148573 ACGAAGTAGTACATCTCAAATTTGCTG 60.149 37.037 13.54 12.23 41.94 4.41
2882 3065 1.226746 GTCCACTTGTCGTTCCTTGG 58.773 55.000 0.00 0.00 0.00 3.61
2892 3147 0.179018 GGTTCCTGCTGTCCACTTGT 60.179 55.000 0.00 0.00 0.00 3.16
2916 3171 1.472376 CCTTCTGATGAACTCCGCTCC 60.472 57.143 0.00 0.00 0.00 4.70
2919 3174 1.478510 TCTCCTTCTGATGAACTCCGC 59.521 52.381 0.00 0.00 0.00 5.54
2921 3176 3.370104 TCCTCTCCTTCTGATGAACTCC 58.630 50.000 0.00 0.00 0.00 3.85
2925 3180 3.765432 TCCTCCTCTCCTTCTGATGAA 57.235 47.619 0.00 0.00 0.00 2.57
2926 3181 3.370104 GTTCCTCCTCTCCTTCTGATGA 58.630 50.000 0.00 0.00 0.00 2.92
2927 3182 2.433970 GGTTCCTCCTCTCCTTCTGATG 59.566 54.545 0.00 0.00 0.00 3.07
2928 3183 2.758130 GGTTCCTCCTCTCCTTCTGAT 58.242 52.381 0.00 0.00 0.00 2.90
2929 3184 1.617263 CGGTTCCTCCTCTCCTTCTGA 60.617 57.143 0.00 0.00 0.00 3.27
2931 3186 0.705253 TCGGTTCCTCCTCTCCTTCT 59.295 55.000 0.00 0.00 0.00 2.85
2944 3199 1.425428 CGCCTTCATTGCTCGGTTC 59.575 57.895 0.00 0.00 0.00 3.62
2961 3216 4.025401 GTTGGTCTTGTGGCGCCG 62.025 66.667 23.90 7.44 0.00 6.46
2963 3218 3.670377 GGGTTGGTCTTGTGGCGC 61.670 66.667 0.00 0.00 0.00 6.53
2981 3263 1.609061 CGGTCTCTGTGCAATCCACTT 60.609 52.381 0.00 0.00 44.92 3.16
3011 3293 1.401552 ACGGTCGGCATTGATGATTTG 59.598 47.619 0.00 0.00 0.00 2.32
3018 3300 0.953471 CCTTTCACGGTCGGCATTGA 60.953 55.000 0.00 0.00 0.00 2.57
3128 3430 9.715121 TGTTACCATTGTTTTAAGACTACTAGG 57.285 33.333 0.00 0.00 0.00 3.02
3132 3434 8.294577 CCCTTGTTACCATTGTTTTAAGACTAC 58.705 37.037 0.00 0.00 0.00 2.73
3140 3442 6.739331 TGAATCCCTTGTTACCATTGTTTT 57.261 33.333 0.00 0.00 0.00 2.43
3171 3473 4.487948 CGTAAACGAACTCCTTGGATACA 58.512 43.478 0.00 0.00 44.69 2.29
3172 3474 3.305361 GCGTAAACGAACTCCTTGGATAC 59.695 47.826 6.71 0.00 43.02 2.24
3173 3475 3.194116 AGCGTAAACGAACTCCTTGGATA 59.806 43.478 6.71 0.00 43.02 2.59
3186 3488 2.095843 GCGAGGCAAGCGTAAACG 59.904 61.111 0.00 0.00 43.27 3.60
3187 3489 2.322081 TGGCGAGGCAAGCGTAAAC 61.322 57.895 0.00 0.00 35.00 2.01
3189 3491 2.740826 GTGGCGAGGCAAGCGTAA 60.741 61.111 0.00 0.00 35.00 3.18
3207 3509 9.798885 GATAAGCAAAATGACGATGTACTTATC 57.201 33.333 0.00 0.00 37.40 1.75
3297 3599 0.249073 ATCACATACCGAGCGCAGAC 60.249 55.000 11.47 0.00 0.00 3.51
3370 3672 9.871238 TTTTAGAGATTTCACTATGGACTACAC 57.129 33.333 0.00 0.00 0.00 2.90
3428 3732 9.412460 TGCCAAATGAGTTATTAGAGATTTCAT 57.588 29.630 0.00 0.00 0.00 2.57
3429 3733 8.677300 GTGCCAAATGAGTTATTAGAGATTTCA 58.323 33.333 0.00 0.00 0.00 2.69
3430 3734 8.131731 GGTGCCAAATGAGTTATTAGAGATTTC 58.868 37.037 0.00 0.00 0.00 2.17
3431 3735 7.068716 GGGTGCCAAATGAGTTATTAGAGATTT 59.931 37.037 0.00 0.00 0.00 2.17
3432 3736 6.547510 GGGTGCCAAATGAGTTATTAGAGATT 59.452 38.462 0.00 0.00 0.00 2.40
3433 3737 6.064717 GGGTGCCAAATGAGTTATTAGAGAT 58.935 40.000 0.00 0.00 0.00 2.75
3434 3738 5.045213 TGGGTGCCAAATGAGTTATTAGAGA 60.045 40.000 0.00 0.00 0.00 3.10
3435 3739 5.192927 TGGGTGCCAAATGAGTTATTAGAG 58.807 41.667 0.00 0.00 0.00 2.43
3436 3740 5.186256 TGGGTGCCAAATGAGTTATTAGA 57.814 39.130 0.00 0.00 0.00 2.10
3437 3741 5.913137 TTGGGTGCCAAATGAGTTATTAG 57.087 39.130 0.00 0.00 40.92 1.73
3449 3753 3.198635 TGAAATGAAAGTTTGGGTGCCAA 59.801 39.130 0.00 0.00 42.29 4.52
3450 3754 2.768527 TGAAATGAAAGTTTGGGTGCCA 59.231 40.909 0.00 0.00 0.00 4.92
3451 3755 3.467374 TGAAATGAAAGTTTGGGTGCC 57.533 42.857 0.00 0.00 0.00 5.01
3452 3756 5.277925 CCAAATGAAATGAAAGTTTGGGTGC 60.278 40.000 7.17 0.00 43.05 5.01
3453 3757 6.303021 CCAAATGAAATGAAAGTTTGGGTG 57.697 37.500 7.17 0.00 43.05 4.61
3457 3761 7.551035 TTCCACCAAATGAAATGAAAGTTTG 57.449 32.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.