Multiple sequence alignment - TraesCS1A01G132400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G132400 chr1A 100.000 3270 0 0 1 3270 179538120 179534851 0.000000e+00 6039
1 TraesCS1A01G132400 chr1B 92.765 1396 79 8 1256 2651 257501667 257503040 0.000000e+00 1999
2 TraesCS1A01G132400 chr1B 93.294 686 30 5 506 1176 257500880 257501564 0.000000e+00 998
3 TraesCS1A01G132400 chr1B 91.494 435 31 2 1226 1657 587390037 587390468 7.810000e-166 593
4 TraesCS1A01G132400 chr1B 92.580 283 21 0 873 1155 147227611 147227329 1.090000e-109 407
5 TraesCS1A01G132400 chr1B 91.873 283 23 0 873 1155 587389750 587390032 2.360000e-106 396
6 TraesCS1A01G132400 chr7D 93.160 921 42 9 1812 2729 215928058 215928960 0.000000e+00 1332
7 TraesCS1A01G132400 chr7D 92.802 653 28 7 506 1155 215926808 215927444 0.000000e+00 928
8 TraesCS1A01G132400 chr2B 92.414 435 27 2 1235 1666 70000912 70000481 1.670000e-172 616
9 TraesCS1A01G132400 chr2B 91.954 435 29 2 1235 1666 22951110 22950679 3.610000e-169 604
10 TraesCS1A01G132400 chr2B 91.034 435 33 2 1235 1666 145577300 145576869 1.690000e-162 582
11 TraesCS1A01G132400 chr2B 92.933 283 20 0 873 1155 22951406 22951124 2.350000e-111 412
12 TraesCS1A01G132400 chr2B 92.226 283 22 0 873 1155 145577596 145577314 5.080000e-108 401
13 TraesCS1A01G132400 chr2B 91.873 283 23 0 873 1155 70001208 70000926 2.360000e-106 396
14 TraesCS1A01G132400 chr2B 93.798 129 8 0 3142 3270 424320707 424320835 9.260000e-46 195
15 TraesCS1A01G132400 chr7B 92.184 435 28 2 1226 1657 577431554 577431985 7.760000e-171 610
16 TraesCS1A01G132400 chr7B 92.580 283 21 0 873 1155 577431267 577431549 1.090000e-109 407
17 TraesCS1A01G132400 chr3B 92.184 435 28 2 1235 1666 246858316 246857885 7.760000e-171 610
18 TraesCS1A01G132400 chr3B 83.045 289 41 5 2853 3137 810628225 810628509 4.190000e-64 255
19 TraesCS1A01G132400 chr5B 91.972 436 27 4 1226 1657 440047872 440048303 3.610000e-169 604
20 TraesCS1A01G132400 chr5B 91.494 435 31 2 1226 1657 613244936 613245367 7.810000e-166 593
21 TraesCS1A01G132400 chr5B 92.226 283 22 0 873 1155 440047585 440047867 5.080000e-108 401
22 TraesCS1A01G132400 chr5B 86.379 301 39 2 1971 2270 566500670 566500969 8.750000e-86 327
23 TraesCS1A01G132400 chr5B 84.099 283 24 11 873 1155 613244670 613244931 1.510000e-63 254
24 TraesCS1A01G132400 chr5B 93.798 129 8 0 3142 3270 323890607 323890479 9.260000e-46 195
25 TraesCS1A01G132400 chr5B 93.023 129 9 0 3142 3270 37705390 37705518 4.310000e-44 189
26 TraesCS1A01G132400 chr4A 92.784 291 16 3 2860 3146 658237136 658236847 1.810000e-112 416
27 TraesCS1A01G132400 chr4A 91.986 287 18 3 2863 3146 467261854 467262138 6.570000e-107 398
28 TraesCS1A01G132400 chr4B 93.286 283 15 2 2861 3140 299744299 299744580 6.530000e-112 414
29 TraesCS1A01G132400 chr4B 100.000 129 0 0 3142 3270 299745886 299746014 4.220000e-59 239
30 TraesCS1A01G132400 chr6B 92.042 289 18 3 2855 3140 719428518 719428804 5.080000e-108 401
31 TraesCS1A01G132400 chr6B 100.000 129 0 0 3142 3270 719430123 719430251 4.220000e-59 239
32 TraesCS1A01G132400 chr4D 91.289 287 22 1 2863 3146 205903719 205903433 3.960000e-104 388
33 TraesCS1A01G132400 chr4D 90.244 287 24 2 2863 3146 205941808 205941523 3.980000e-99 372
34 TraesCS1A01G132400 chr5D 86.755 302 38 2 1971 2271 460646090 460646390 5.230000e-88 335
35 TraesCS1A01G132400 chr5D 96.124 129 5 0 3142 3270 191262497 191262625 9.190000e-51 211
36 TraesCS1A01G132400 chr5D 95.349 129 6 0 3142 3270 196351575 196351447 4.280000e-49 206
37 TraesCS1A01G132400 chr2D 86.063 287 37 1 2863 3146 568320654 568320368 4.100000e-79 305
38 TraesCS1A01G132400 chr2D 83.681 288 37 5 2864 3146 539166909 539166627 2.500000e-66 263
39 TraesCS1A01G132400 chrUn 93.023 129 9 0 3142 3270 65724055 65724183 4.310000e-44 189
40 TraesCS1A01G132400 chr2A 92.248 129 10 0 3142 3270 475796130 475796258 2.000000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G132400 chr1A 179534851 179538120 3269 True 6039.0 6039 100.0000 1 3270 1 chr1A.!!$R1 3269
1 TraesCS1A01G132400 chr1B 257500880 257503040 2160 False 1498.5 1999 93.0295 506 2651 2 chr1B.!!$F1 2145
2 TraesCS1A01G132400 chr1B 587389750 587390468 718 False 494.5 593 91.6835 873 1657 2 chr1B.!!$F2 784
3 TraesCS1A01G132400 chr7D 215926808 215928960 2152 False 1130.0 1332 92.9810 506 2729 2 chr7D.!!$F1 2223
4 TraesCS1A01G132400 chr2B 22950679 22951406 727 True 508.0 604 92.4435 873 1666 2 chr2B.!!$R1 793
5 TraesCS1A01G132400 chr2B 70000481 70001208 727 True 506.0 616 92.1435 873 1666 2 chr2B.!!$R2 793
6 TraesCS1A01G132400 chr2B 145576869 145577596 727 True 491.5 582 91.6300 873 1666 2 chr2B.!!$R3 793
7 TraesCS1A01G132400 chr7B 577431267 577431985 718 False 508.5 610 92.3820 873 1657 2 chr7B.!!$F1 784
8 TraesCS1A01G132400 chr5B 440047585 440048303 718 False 502.5 604 92.0990 873 1657 2 chr5B.!!$F3 784
9 TraesCS1A01G132400 chr5B 613244670 613245367 697 False 423.5 593 87.7965 873 1657 2 chr5B.!!$F4 784
10 TraesCS1A01G132400 chr4B 299744299 299746014 1715 False 326.5 414 96.6430 2861 3270 2 chr4B.!!$F1 409
11 TraesCS1A01G132400 chr6B 719428518 719430251 1733 False 320.0 401 96.0210 2855 3270 2 chr6B.!!$F1 415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.109458 GTTTCGAAACCCGGATTGCC 60.109 55.0 27.01 1.12 39.14 4.52 F
540 541 0.112218 TCAGGTCCATGGTGGTTTGG 59.888 55.0 12.58 0.00 39.03 3.28 F
967 983 0.179004 TTGCTGATGGTTTCGGTGGT 60.179 50.0 0.00 0.00 32.85 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2093 0.041576 CAAGCATGTCATGATCGGCG 60.042 55.0 17.24 0.0 0.0 6.46 R
1984 2142 1.182667 TGAGCTGCCTGTGTATACGT 58.817 50.0 0.00 0.0 0.0 3.57 R
2756 2916 0.033894 ACAAAACCCAGTCCCGTTGT 60.034 50.0 0.00 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 9.778993 ATCATTGAGTTTGAATAAAGTTCATCG 57.221 29.630 0.00 0.00 29.74 3.84
92 93 8.998377 TCATTGAGTTTGAATAAAGTTCATCGA 58.002 29.630 0.00 0.00 29.74 3.59
93 94 9.611284 CATTGAGTTTGAATAAAGTTCATCGAA 57.389 29.630 0.00 0.00 29.74 3.71
94 95 9.831737 ATTGAGTTTGAATAAAGTTCATCGAAG 57.168 29.630 0.00 0.00 29.74 3.79
95 96 8.378172 TGAGTTTGAATAAAGTTCATCGAAGT 57.622 30.769 0.00 0.00 29.74 3.01
96 97 8.836413 TGAGTTTGAATAAAGTTCATCGAAGTT 58.164 29.630 0.00 0.00 36.85 2.66
97 98 9.107367 GAGTTTGAATAAAGTTCATCGAAGTTG 57.893 33.333 0.00 0.00 35.66 3.16
98 99 8.836413 AGTTTGAATAAAGTTCATCGAAGTTGA 58.164 29.630 0.00 0.00 35.66 3.18
99 100 9.445786 GTTTGAATAAAGTTCATCGAAGTTGAA 57.554 29.630 0.00 0.00 35.66 2.69
102 103 9.663904 TGAATAAAGTTCATCGAAGTTGAAAAG 57.336 29.630 1.64 0.00 35.66 2.27
103 104 9.878599 GAATAAAGTTCATCGAAGTTGAAAAGA 57.121 29.630 1.64 0.00 35.66 2.52
104 105 9.884465 AATAAAGTTCATCGAAGTTGAAAAGAG 57.116 29.630 1.64 0.00 35.66 2.85
105 106 6.927294 AAGTTCATCGAAGTTGAAAAGAGT 57.073 33.333 1.64 0.00 34.41 3.24
106 107 6.927294 AGTTCATCGAAGTTGAAAAGAGTT 57.073 33.333 1.64 0.00 35.03 3.01
107 108 6.949449 AGTTCATCGAAGTTGAAAAGAGTTC 58.051 36.000 1.64 0.00 35.03 3.01
108 109 6.538742 AGTTCATCGAAGTTGAAAAGAGTTCA 59.461 34.615 1.64 0.00 35.03 3.18
109 110 7.227512 AGTTCATCGAAGTTGAAAAGAGTTCAT 59.772 33.333 1.64 0.00 35.03 2.57
110 111 7.121974 TCATCGAAGTTGAAAAGAGTTCATC 57.878 36.000 0.00 0.00 0.00 2.92
111 112 5.924475 TCGAAGTTGAAAAGAGTTCATCC 57.076 39.130 0.00 0.00 0.00 3.51
112 113 5.364778 TCGAAGTTGAAAAGAGTTCATCCA 58.635 37.500 0.00 0.00 0.00 3.41
113 114 5.820423 TCGAAGTTGAAAAGAGTTCATCCAA 59.180 36.000 0.00 0.00 0.00 3.53
114 115 6.486657 TCGAAGTTGAAAAGAGTTCATCCAAT 59.513 34.615 0.00 0.00 0.00 3.16
115 116 7.013274 TCGAAGTTGAAAAGAGTTCATCCAATT 59.987 33.333 0.00 0.00 0.00 2.32
116 117 7.649306 CGAAGTTGAAAAGAGTTCATCCAATTT 59.351 33.333 0.00 0.00 0.00 1.82
117 118 9.965824 GAAGTTGAAAAGAGTTCATCCAATTTA 57.034 29.630 0.00 0.00 0.00 1.40
164 165 5.977171 AAGGTTCACCAATTTTAAAACGC 57.023 34.783 1.97 0.00 38.89 4.84
165 166 5.012328 AGGTTCACCAATTTTAAAACGCA 57.988 34.783 1.97 0.00 38.89 5.24
166 167 5.606505 AGGTTCACCAATTTTAAAACGCAT 58.393 33.333 1.97 0.00 38.89 4.73
167 168 6.052360 AGGTTCACCAATTTTAAAACGCATT 58.948 32.000 1.97 0.00 38.89 3.56
168 169 7.210873 AGGTTCACCAATTTTAAAACGCATTA 58.789 30.769 1.97 0.00 38.89 1.90
169 170 7.711339 AGGTTCACCAATTTTAAAACGCATTAA 59.289 29.630 1.97 0.00 38.89 1.40
170 171 8.336080 GGTTCACCAATTTTAAAACGCATTAAA 58.664 29.630 1.97 2.77 33.41 1.52
171 172 9.364110 GTTCACCAATTTTAAAACGCATTAAAG 57.636 29.630 1.97 0.07 36.44 1.85
172 173 8.873215 TCACCAATTTTAAAACGCATTAAAGA 57.127 26.923 1.97 0.00 36.44 2.52
173 174 9.314321 TCACCAATTTTAAAACGCATTAAAGAA 57.686 25.926 1.97 0.00 36.44 2.52
174 175 9.922305 CACCAATTTTAAAACGCATTAAAGAAA 57.078 25.926 1.97 0.00 36.44 2.52
185 186 9.753669 AAACGCATTAAAGAAAACAAAAAGAAG 57.246 25.926 0.00 0.00 0.00 2.85
186 187 8.696410 ACGCATTAAAGAAAACAAAAAGAAGA 57.304 26.923 0.00 0.00 0.00 2.87
187 188 9.145865 ACGCATTAAAGAAAACAAAAAGAAGAA 57.854 25.926 0.00 0.00 0.00 2.52
188 189 9.965748 CGCATTAAAGAAAACAAAAAGAAGAAA 57.034 25.926 0.00 0.00 0.00 2.52
225 226 9.942850 AAGACAAAATGAAAAAGAAAGAAGGAA 57.057 25.926 0.00 0.00 0.00 3.36
226 227 9.942850 AGACAAAATGAAAAAGAAAGAAGGAAA 57.057 25.926 0.00 0.00 0.00 3.13
236 237 9.871238 AAAAAGAAAGAAGGAAAAAGTAGAACC 57.129 29.630 0.00 0.00 0.00 3.62
237 238 6.862711 AGAAAGAAGGAAAAAGTAGAACCG 57.137 37.500 0.00 0.00 0.00 4.44
238 239 6.589135 AGAAAGAAGGAAAAAGTAGAACCGA 58.411 36.000 0.00 0.00 0.00 4.69
239 240 7.052248 AGAAAGAAGGAAAAAGTAGAACCGAA 58.948 34.615 0.00 0.00 0.00 4.30
240 241 6.862711 AAGAAGGAAAAAGTAGAACCGAAG 57.137 37.500 0.00 0.00 0.00 3.79
241 242 5.926663 AGAAGGAAAAAGTAGAACCGAAGT 58.073 37.500 0.00 0.00 0.00 3.01
242 243 7.059202 AGAAGGAAAAAGTAGAACCGAAGTA 57.941 36.000 0.00 0.00 0.00 2.24
243 244 7.503549 AGAAGGAAAAAGTAGAACCGAAGTAA 58.496 34.615 0.00 0.00 0.00 2.24
244 245 7.989170 AGAAGGAAAAAGTAGAACCGAAGTAAA 59.011 33.333 0.00 0.00 0.00 2.01
245 246 7.725818 AGGAAAAAGTAGAACCGAAGTAAAG 57.274 36.000 0.00 0.00 0.00 1.85
246 247 7.503549 AGGAAAAAGTAGAACCGAAGTAAAGA 58.496 34.615 0.00 0.00 0.00 2.52
247 248 7.989170 AGGAAAAAGTAGAACCGAAGTAAAGAA 59.011 33.333 0.00 0.00 0.00 2.52
248 249 8.781196 GGAAAAAGTAGAACCGAAGTAAAGAAT 58.219 33.333 0.00 0.00 0.00 2.40
249 250 9.595357 GAAAAAGTAGAACCGAAGTAAAGAATG 57.405 33.333 0.00 0.00 0.00 2.67
250 251 8.897872 AAAAGTAGAACCGAAGTAAAGAATGA 57.102 30.769 0.00 0.00 0.00 2.57
251 252 9.503399 AAAAGTAGAACCGAAGTAAAGAATGAT 57.497 29.630 0.00 0.00 0.00 2.45
253 254 9.804758 AAGTAGAACCGAAGTAAAGAATGATAG 57.195 33.333 0.00 0.00 0.00 2.08
254 255 9.186837 AGTAGAACCGAAGTAAAGAATGATAGA 57.813 33.333 0.00 0.00 0.00 1.98
255 256 9.798994 GTAGAACCGAAGTAAAGAATGATAGAA 57.201 33.333 0.00 0.00 0.00 2.10
257 258 9.720769 AGAACCGAAGTAAAGAATGATAGAAAA 57.279 29.630 0.00 0.00 0.00 2.29
258 259 9.974750 GAACCGAAGTAAAGAATGATAGAAAAG 57.025 33.333 0.00 0.00 0.00 2.27
259 260 9.720769 AACCGAAGTAAAGAATGATAGAAAAGA 57.279 29.630 0.00 0.00 0.00 2.52
260 261 9.372369 ACCGAAGTAAAGAATGATAGAAAAGAG 57.628 33.333 0.00 0.00 0.00 2.85
261 262 9.587772 CCGAAGTAAAGAATGATAGAAAAGAGA 57.412 33.333 0.00 0.00 0.00 3.10
280 281 8.608844 AAAGAGAACAATAAGTCAACTACTGG 57.391 34.615 0.00 0.00 38.88 4.00
281 282 6.702329 AGAGAACAATAAGTCAACTACTGGG 58.298 40.000 0.00 0.00 38.88 4.45
282 283 5.805728 AGAACAATAAGTCAACTACTGGGG 58.194 41.667 0.00 0.00 38.88 4.96
283 284 3.951663 ACAATAAGTCAACTACTGGGGC 58.048 45.455 0.00 0.00 38.88 5.80
284 285 3.587506 ACAATAAGTCAACTACTGGGGCT 59.412 43.478 0.00 0.00 38.88 5.19
285 286 4.042934 ACAATAAGTCAACTACTGGGGCTT 59.957 41.667 0.00 0.00 38.88 4.35
286 287 5.249852 ACAATAAGTCAACTACTGGGGCTTA 59.750 40.000 0.00 0.00 38.88 3.09
287 288 3.983044 AAGTCAACTACTGGGGCTTAG 57.017 47.619 0.00 0.00 38.88 2.18
288 289 1.555533 AGTCAACTACTGGGGCTTAGC 59.444 52.381 0.00 0.00 36.93 3.09
289 290 3.745836 AGTCAACTACTGGGGCTTAGCC 61.746 54.545 16.07 16.07 42.27 3.93
299 300 2.799176 GGCTTAGCCTGGTGATTGG 58.201 57.895 17.16 0.00 46.69 3.16
300 301 0.255890 GGCTTAGCCTGGTGATTGGA 59.744 55.000 17.16 0.00 46.69 3.53
301 302 1.340991 GGCTTAGCCTGGTGATTGGAA 60.341 52.381 17.16 0.00 46.69 3.53
302 303 1.745653 GCTTAGCCTGGTGATTGGAAC 59.254 52.381 0.00 0.00 0.00 3.62
303 304 2.009774 CTTAGCCTGGTGATTGGAACG 58.990 52.381 0.00 0.00 0.00 3.95
304 305 1.271856 TAGCCTGGTGATTGGAACGA 58.728 50.000 0.00 0.00 0.00 3.85
305 306 0.400213 AGCCTGGTGATTGGAACGAA 59.600 50.000 0.00 0.00 0.00 3.85
306 307 0.804989 GCCTGGTGATTGGAACGAAG 59.195 55.000 0.00 0.00 0.00 3.79
307 308 0.804989 CCTGGTGATTGGAACGAAGC 59.195 55.000 0.00 0.00 0.00 3.86
308 309 0.804989 CTGGTGATTGGAACGAAGCC 59.195 55.000 0.00 0.00 0.00 4.35
309 310 0.400213 TGGTGATTGGAACGAAGCCT 59.600 50.000 0.00 0.00 0.00 4.58
310 311 1.087501 GGTGATTGGAACGAAGCCTC 58.912 55.000 0.00 0.00 0.00 4.70
311 312 1.610624 GGTGATTGGAACGAAGCCTCA 60.611 52.381 0.00 0.00 0.00 3.86
312 313 1.464997 GTGATTGGAACGAAGCCTCAC 59.535 52.381 0.00 0.00 0.00 3.51
313 314 1.087501 GATTGGAACGAAGCCTCACC 58.912 55.000 0.00 0.00 0.00 4.02
314 315 0.673644 ATTGGAACGAAGCCTCACCG 60.674 55.000 0.00 0.00 0.00 4.94
315 316 3.119096 GGAACGAAGCCTCACCGC 61.119 66.667 0.00 0.00 0.00 5.68
316 317 3.479269 GAACGAAGCCTCACCGCG 61.479 66.667 0.00 0.00 0.00 6.46
317 318 3.909258 GAACGAAGCCTCACCGCGA 62.909 63.158 8.23 0.00 0.00 5.87
318 319 3.509137 AACGAAGCCTCACCGCGAA 62.509 57.895 8.23 0.00 0.00 4.70
319 320 3.181967 CGAAGCCTCACCGCGAAG 61.182 66.667 8.23 1.29 0.00 3.79
320 321 2.048127 GAAGCCTCACCGCGAAGT 60.048 61.111 8.23 0.00 0.00 3.01
321 322 2.357517 AAGCCTCACCGCGAAGTG 60.358 61.111 8.23 8.68 39.20 3.16
331 332 2.719354 GCGAAGTGGTTGCGGTTT 59.281 55.556 0.00 0.00 0.00 3.27
332 333 1.370051 GCGAAGTGGTTGCGGTTTC 60.370 57.895 0.00 0.00 0.00 2.78
333 334 1.083015 CGAAGTGGTTGCGGTTTCG 60.083 57.895 0.00 0.00 39.81 3.46
334 335 1.492319 CGAAGTGGTTGCGGTTTCGA 61.492 55.000 0.00 0.00 42.16 3.71
335 336 0.658897 GAAGTGGTTGCGGTTTCGAA 59.341 50.000 0.00 0.00 39.00 3.71
336 337 1.064357 GAAGTGGTTGCGGTTTCGAAA 59.936 47.619 6.47 6.47 39.00 3.46
346 347 3.394800 GTTTCGAAACCCGGATTGC 57.605 52.632 27.01 0.00 39.14 3.56
347 348 0.109458 GTTTCGAAACCCGGATTGCC 60.109 55.000 27.01 1.12 39.14 4.52
348 349 1.245376 TTTCGAAACCCGGATTGCCC 61.245 55.000 6.47 0.00 39.14 5.36
349 350 3.138128 CGAAACCCGGATTGCCCC 61.138 66.667 0.73 0.00 33.91 5.80
350 351 2.758327 GAAACCCGGATTGCCCCC 60.758 66.667 0.73 0.00 0.00 5.40
351 352 3.593771 GAAACCCGGATTGCCCCCA 62.594 63.158 0.73 0.00 0.00 4.96
352 353 2.871795 GAAACCCGGATTGCCCCCAT 62.872 60.000 0.73 0.00 0.00 4.00
353 354 2.469563 AAACCCGGATTGCCCCCATT 62.470 55.000 0.73 0.00 0.00 3.16
354 355 2.042025 CCCGGATTGCCCCCATTT 60.042 61.111 0.73 0.00 0.00 2.32
355 356 1.688884 CCCGGATTGCCCCCATTTT 60.689 57.895 0.73 0.00 0.00 1.82
356 357 1.271127 CCCGGATTGCCCCCATTTTT 61.271 55.000 0.73 0.00 0.00 1.94
375 376 5.532025 TTTTTGCGTTCGGAAAACAAATT 57.468 30.435 20.17 0.00 35.72 1.82
376 377 6.642683 TTTTTGCGTTCGGAAAACAAATTA 57.357 29.167 20.17 6.04 35.72 1.40
377 378 6.830114 TTTTGCGTTCGGAAAACAAATTAT 57.170 29.167 17.51 0.00 32.15 1.28
378 379 7.925703 TTTTGCGTTCGGAAAACAAATTATA 57.074 28.000 17.51 3.75 32.15 0.98
379 380 8.522178 TTTTGCGTTCGGAAAACAAATTATAT 57.478 26.923 17.51 0.00 32.15 0.86
380 381 7.499438 TTGCGTTCGGAAAACAAATTATATG 57.501 32.000 4.68 0.00 0.00 1.78
381 382 6.030849 TGCGTTCGGAAAACAAATTATATGG 58.969 36.000 0.00 0.00 0.00 2.74
382 383 5.457473 GCGTTCGGAAAACAAATTATATGGG 59.543 40.000 0.00 0.00 0.00 4.00
383 384 5.457473 CGTTCGGAAAACAAATTATATGGGC 59.543 40.000 0.00 0.00 0.00 5.36
384 385 5.523438 TCGGAAAACAAATTATATGGGCC 57.477 39.130 0.00 0.00 0.00 5.80
385 386 4.036971 TCGGAAAACAAATTATATGGGCCG 59.963 41.667 0.00 0.00 35.53 6.13
386 387 4.627058 GGAAAACAAATTATATGGGCCGG 58.373 43.478 0.00 0.00 0.00 6.13
387 388 3.744238 AAACAAATTATATGGGCCGGC 57.256 42.857 21.18 21.18 0.00 6.13
388 389 1.627864 ACAAATTATATGGGCCGGCC 58.372 50.000 38.57 38.57 0.00 6.13
405 406 3.473647 CCATCTCGGGGCTCTGCA 61.474 66.667 0.00 0.00 0.00 4.41
406 407 2.586245 CATCTCGGGGCTCTGCAA 59.414 61.111 0.00 0.00 0.00 4.08
407 408 1.523258 CATCTCGGGGCTCTGCAAG 60.523 63.158 0.00 0.00 0.00 4.01
416 417 3.357079 CTCTGCAAGCGCCCGTTT 61.357 61.111 2.29 0.00 37.32 3.60
417 418 2.031314 TCTGCAAGCGCCCGTTTA 59.969 55.556 2.29 0.00 37.32 2.01
418 419 2.175811 CTGCAAGCGCCCGTTTAC 59.824 61.111 2.29 0.00 37.32 2.01
419 420 2.592001 TGCAAGCGCCCGTTTACA 60.592 55.556 2.29 0.00 37.32 2.41
420 421 2.175811 GCAAGCGCCCGTTTACAG 59.824 61.111 2.29 0.00 0.00 2.74
421 422 2.322081 GCAAGCGCCCGTTTACAGA 61.322 57.895 2.29 0.00 0.00 3.41
422 423 1.847890 GCAAGCGCCCGTTTACAGAA 61.848 55.000 2.29 0.00 0.00 3.02
423 424 0.802494 CAAGCGCCCGTTTACAGAAT 59.198 50.000 2.29 0.00 0.00 2.40
424 425 2.004017 CAAGCGCCCGTTTACAGAATA 58.996 47.619 2.29 0.00 0.00 1.75
425 426 1.648504 AGCGCCCGTTTACAGAATAC 58.351 50.000 2.29 0.00 0.00 1.89
426 427 1.066716 AGCGCCCGTTTACAGAATACA 60.067 47.619 2.29 0.00 0.00 2.29
427 428 1.061566 GCGCCCGTTTACAGAATACAC 59.938 52.381 0.00 0.00 0.00 2.90
428 429 1.322338 CGCCCGTTTACAGAATACACG 59.678 52.381 0.00 0.00 0.00 4.49
429 430 2.340337 GCCCGTTTACAGAATACACGT 58.660 47.619 0.00 0.00 0.00 4.49
430 431 2.738314 GCCCGTTTACAGAATACACGTT 59.262 45.455 0.00 0.00 0.00 3.99
431 432 3.925913 GCCCGTTTACAGAATACACGTTA 59.074 43.478 0.00 0.00 0.00 3.18
432 433 4.388469 GCCCGTTTACAGAATACACGTTAA 59.612 41.667 0.00 0.00 0.00 2.01
433 434 5.668621 GCCCGTTTACAGAATACACGTTAAC 60.669 44.000 0.00 0.00 0.00 2.01
434 435 5.443170 CCCGTTTACAGAATACACGTTAACG 60.443 44.000 25.68 25.68 42.21 3.18
435 436 5.532041 CGTTTACAGAATACACGTTAACGG 58.468 41.667 29.81 20.71 40.18 4.44
442 443 3.784412 CACGTTAACGGGCGCCTG 61.784 66.667 33.73 33.73 44.95 4.85
445 446 3.799755 GTTAACGGGCGCCTGCTG 61.800 66.667 35.17 19.75 42.25 4.41
452 453 3.055719 GGCGCCTGCTGCACTAAA 61.056 61.111 22.15 0.00 41.33 1.85
453 454 2.409870 GGCGCCTGCTGCACTAAAT 61.410 57.895 22.15 0.00 41.33 1.40
454 455 1.095228 GGCGCCTGCTGCACTAAATA 61.095 55.000 22.15 0.00 41.33 1.40
455 456 0.305922 GCGCCTGCTGCACTAAATAG 59.694 55.000 0.00 0.00 41.33 1.73
456 457 0.940126 CGCCTGCTGCACTAAATAGG 59.060 55.000 0.00 0.00 41.33 2.57
457 458 1.473257 CGCCTGCTGCACTAAATAGGA 60.473 52.381 0.00 0.00 41.33 2.94
458 459 2.808202 CGCCTGCTGCACTAAATAGGAT 60.808 50.000 0.00 0.00 41.33 3.24
459 460 3.217626 GCCTGCTGCACTAAATAGGATT 58.782 45.455 0.00 0.00 40.77 3.01
460 461 3.251972 GCCTGCTGCACTAAATAGGATTC 59.748 47.826 0.00 0.00 40.77 2.52
461 462 3.496130 CCTGCTGCACTAAATAGGATTCG 59.504 47.826 0.00 0.00 0.00 3.34
462 463 2.872245 TGCTGCACTAAATAGGATTCGC 59.128 45.455 0.00 0.00 0.00 4.70
463 464 2.224314 GCTGCACTAAATAGGATTCGCC 59.776 50.000 0.00 0.00 0.00 5.54
464 465 2.808543 CTGCACTAAATAGGATTCGCCC 59.191 50.000 0.00 0.00 37.37 6.13
465 466 2.152016 GCACTAAATAGGATTCGCCCC 58.848 52.381 0.00 0.00 37.37 5.80
466 467 2.486548 GCACTAAATAGGATTCGCCCCA 60.487 50.000 0.00 0.00 37.37 4.96
467 468 3.403038 CACTAAATAGGATTCGCCCCAG 58.597 50.000 0.00 0.00 37.37 4.45
468 469 3.071023 CACTAAATAGGATTCGCCCCAGA 59.929 47.826 0.00 0.00 37.37 3.86
469 470 3.714798 ACTAAATAGGATTCGCCCCAGAA 59.285 43.478 0.00 0.00 37.37 3.02
470 471 3.662759 AAATAGGATTCGCCCCAGAAA 57.337 42.857 0.00 0.00 37.37 2.52
471 472 3.884037 AATAGGATTCGCCCCAGAAAT 57.116 42.857 0.00 0.00 37.37 2.17
472 473 4.993705 AATAGGATTCGCCCCAGAAATA 57.006 40.909 0.00 0.00 37.37 1.40
473 474 2.938956 AGGATTCGCCCCAGAAATAG 57.061 50.000 0.00 0.00 37.37 1.73
474 475 2.408565 AGGATTCGCCCCAGAAATAGA 58.591 47.619 0.00 0.00 37.37 1.98
475 476 2.982488 AGGATTCGCCCCAGAAATAGAT 59.018 45.455 0.00 0.00 37.37 1.98
476 477 4.168101 AGGATTCGCCCCAGAAATAGATA 58.832 43.478 0.00 0.00 37.37 1.98
477 478 4.223923 AGGATTCGCCCCAGAAATAGATAG 59.776 45.833 0.00 0.00 37.37 2.08
478 479 3.402628 TTCGCCCCAGAAATAGATAGC 57.597 47.619 0.00 0.00 0.00 2.97
479 480 2.325484 TCGCCCCAGAAATAGATAGCA 58.675 47.619 0.00 0.00 0.00 3.49
480 481 2.300152 TCGCCCCAGAAATAGATAGCAG 59.700 50.000 0.00 0.00 0.00 4.24
481 482 2.431454 GCCCCAGAAATAGATAGCAGC 58.569 52.381 0.00 0.00 0.00 5.25
482 483 2.039613 GCCCCAGAAATAGATAGCAGCT 59.960 50.000 0.00 0.00 0.00 4.24
483 484 3.497584 GCCCCAGAAATAGATAGCAGCTT 60.498 47.826 0.00 0.00 0.00 3.74
484 485 4.322567 CCCCAGAAATAGATAGCAGCTTC 58.677 47.826 0.00 0.00 0.00 3.86
485 486 4.322567 CCCAGAAATAGATAGCAGCTTCC 58.677 47.826 0.00 0.00 0.00 3.46
486 487 4.041444 CCCAGAAATAGATAGCAGCTTCCT 59.959 45.833 0.00 0.35 0.00 3.36
487 488 5.247110 CCCAGAAATAGATAGCAGCTTCCTA 59.753 44.000 0.00 2.93 0.00 2.94
488 489 6.239714 CCCAGAAATAGATAGCAGCTTCCTAA 60.240 42.308 0.00 0.00 0.00 2.69
489 490 7.393216 CCAGAAATAGATAGCAGCTTCCTAAT 58.607 38.462 0.00 0.00 0.00 1.73
490 491 7.882271 CCAGAAATAGATAGCAGCTTCCTAATT 59.118 37.037 0.00 2.09 0.00 1.40
491 492 9.282569 CAGAAATAGATAGCAGCTTCCTAATTT 57.717 33.333 0.00 1.30 0.00 1.82
492 493 9.859152 AGAAATAGATAGCAGCTTCCTAATTTT 57.141 29.630 0.00 1.69 0.00 1.82
493 494 9.890352 GAAATAGATAGCAGCTTCCTAATTTTG 57.110 33.333 0.00 0.00 0.00 2.44
494 495 9.632638 AAATAGATAGCAGCTTCCTAATTTTGA 57.367 29.630 0.00 0.00 0.00 2.69
495 496 8.845413 ATAGATAGCAGCTTCCTAATTTTGAG 57.155 34.615 0.00 0.00 0.00 3.02
496 497 6.893583 AGATAGCAGCTTCCTAATTTTGAGA 58.106 36.000 0.00 0.00 0.00 3.27
497 498 7.341805 AGATAGCAGCTTCCTAATTTTGAGAA 58.658 34.615 0.00 0.00 0.00 2.87
498 499 7.831193 AGATAGCAGCTTCCTAATTTTGAGAAA 59.169 33.333 0.00 0.00 0.00 2.52
499 500 6.018589 AGCAGCTTCCTAATTTTGAGAAAC 57.981 37.500 0.00 0.00 0.00 2.78
500 501 5.536161 AGCAGCTTCCTAATTTTGAGAAACA 59.464 36.000 0.00 0.00 0.00 2.83
501 502 5.631096 GCAGCTTCCTAATTTTGAGAAACAC 59.369 40.000 0.00 0.00 0.00 3.32
502 503 6.152379 CAGCTTCCTAATTTTGAGAAACACC 58.848 40.000 0.00 0.00 0.00 4.16
503 504 6.015940 CAGCTTCCTAATTTTGAGAAACACCT 60.016 38.462 0.00 0.00 0.00 4.00
504 505 6.015940 AGCTTCCTAATTTTGAGAAACACCTG 60.016 38.462 0.00 0.00 0.00 4.00
505 506 5.705609 TCCTAATTTTGAGAAACACCTGC 57.294 39.130 0.00 0.00 0.00 4.85
506 507 4.522789 TCCTAATTTTGAGAAACACCTGCC 59.477 41.667 0.00 0.00 0.00 4.85
507 508 3.369546 AATTTTGAGAAACACCTGCCG 57.630 42.857 0.00 0.00 0.00 5.69
508 509 1.757682 TTTTGAGAAACACCTGCCGT 58.242 45.000 0.00 0.00 0.00 5.68
509 510 2.623878 TTTGAGAAACACCTGCCGTA 57.376 45.000 0.00 0.00 0.00 4.02
510 511 2.623878 TTGAGAAACACCTGCCGTAA 57.376 45.000 0.00 0.00 0.00 3.18
511 512 2.163818 TGAGAAACACCTGCCGTAAG 57.836 50.000 0.00 0.00 0.00 2.34
512 513 1.689813 TGAGAAACACCTGCCGTAAGA 59.310 47.619 0.00 0.00 43.02 2.10
540 541 0.112218 TCAGGTCCATGGTGGTTTGG 59.888 55.000 12.58 0.00 39.03 3.28
585 587 2.464157 AGACAGCAGCTTCCAGTAAC 57.536 50.000 0.00 0.00 0.00 2.50
722 732 2.032634 AGCGCGCCAGAAATTTCGA 61.033 52.632 30.33 0.00 0.00 3.71
850 866 0.322008 CCAAGCCCCAGTCAGTTCTC 60.322 60.000 0.00 0.00 0.00 2.87
870 886 2.959484 GCCCTGTAGCTGCTCCACA 61.959 63.158 4.91 5.12 0.00 4.17
896 912 2.581354 CGAGAGGAAGCCAGGTGG 59.419 66.667 0.00 0.00 38.53 4.61
929 945 2.417651 CCCGACGGTGTAGCTTGAAATA 60.418 50.000 13.94 0.00 0.00 1.40
967 983 0.179004 TTGCTGATGGTTTCGGTGGT 60.179 50.000 0.00 0.00 32.85 4.16
968 984 0.605319 TGCTGATGGTTTCGGTGGTC 60.605 55.000 0.00 0.00 32.85 4.02
1011 1027 1.506028 AAAGGGAGATGGCCGGGAAA 61.506 55.000 2.18 0.00 0.00 3.13
1092 1108 2.041115 GGACAAGAAGAAGGCGCCC 61.041 63.158 26.15 9.10 0.00 6.13
1161 1177 1.007721 TCCCCCTCTTTCCTCTCTCTG 59.992 57.143 0.00 0.00 0.00 3.35
1176 1192 4.096681 TCTCTCTGTCTCTCTCTCTCTGT 58.903 47.826 0.00 0.00 0.00 3.41
1177 1193 4.081476 TCTCTCTGTCTCTCTCTCTCTGTG 60.081 50.000 0.00 0.00 0.00 3.66
1179 1195 3.673902 TCTGTCTCTCTCTCTCTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
1180 1196 3.072330 TCTGTCTCTCTCTCTCTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
1181 1197 3.145286 TGTCTCTCTCTCTCTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
1182 1198 3.146066 GTCTCTCTCTCTCTGTGTGTGT 58.854 50.000 0.00 0.00 0.00 3.72
1183 1199 3.058293 GTCTCTCTCTCTCTGTGTGTGTG 60.058 52.174 0.00 0.00 0.00 3.82
1184 1200 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
1185 1201 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
1186 1202 2.360483 CTCTCTCTCTGTGTGTGTGTGT 59.640 50.000 0.00 0.00 0.00 3.72
1187 1203 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
1188 1204 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
1189 1205 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
1190 1206 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
1191 1207 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
1192 1208 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
1193 1209 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1194 1210 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1195 1211 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1196 1212 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1197 1213 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1198 1214 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1199 1215 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1200 1216 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1201 1217 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1202 1218 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1203 1219 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1204 1220 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1205 1221 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1206 1222 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1207 1223 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1208 1224 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1209 1225 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1210 1226 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1211 1227 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1212 1228 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
1227 1243 7.913821 GTGTGTGTGTGATAATCGATAGTTCTA 59.086 37.037 0.00 0.00 37.40 2.10
1228 1244 8.630037 TGTGTGTGTGATAATCGATAGTTCTAT 58.370 33.333 0.00 0.00 37.40 1.98
1230 1246 9.678941 TGTGTGTGATAATCGATAGTTCTATTC 57.321 33.333 0.00 0.00 37.40 1.75
1231 1247 9.900710 GTGTGTGATAATCGATAGTTCTATTCT 57.099 33.333 0.00 0.00 37.40 2.40
1233 1249 9.562583 GTGTGATAATCGATAGTTCTATTCTCC 57.437 37.037 0.00 0.00 37.40 3.71
1283 1354 0.685097 TCTAAGTGTTTCCTGCCGCT 59.315 50.000 0.00 0.00 0.00 5.52
1341 1412 8.391106 ACGAGATTTGTTGTAGAATCTTATTGC 58.609 33.333 0.00 0.00 41.39 3.56
1409 1480 3.071312 TCGGTTAGCTGGTTTGTTTAGGA 59.929 43.478 0.00 0.00 0.00 2.94
1437 1508 4.891756 TCCCCCATCTTAGTCGTAGTTTAG 59.108 45.833 0.00 0.00 0.00 1.85
1438 1509 4.501058 CCCCCATCTTAGTCGTAGTTTAGC 60.501 50.000 0.00 0.00 0.00 3.09
1579 1653 6.803154 ACTTGTAGCTGTACCTTTTGAATC 57.197 37.500 0.00 0.00 0.00 2.52
1606 1680 4.082081 CCCACACTTGTACCGTACTATTGA 60.082 45.833 14.36 0.00 0.00 2.57
1703 1860 4.948341 TGCTGTCTACTTGGTTACTTGA 57.052 40.909 0.00 0.00 0.00 3.02
1705 1862 5.865085 TGCTGTCTACTTGGTTACTTGAAT 58.135 37.500 0.00 0.00 0.00 2.57
1710 1867 8.918202 TGTCTACTTGGTTACTTGAATCATTT 57.082 30.769 0.00 0.00 0.00 2.32
1739 1896 7.227156 GGGATGTACTCTTCCATGTTATCAAT 58.773 38.462 10.80 0.00 38.97 2.57
1800 1957 6.183360 CCTCAATCTCACTTGTTCTGTGTTTT 60.183 38.462 0.00 0.00 36.83 2.43
1805 1962 7.303634 TCTCACTTGTTCTGTGTTTTTAGAC 57.696 36.000 0.00 0.00 36.83 2.59
1816 1973 5.587289 TGTGTTTTTAGACCATTCACTTGC 58.413 37.500 0.00 0.00 0.00 4.01
1832 1989 2.005451 CTTGCTCTGTATCTGGCACAC 58.995 52.381 0.00 0.00 34.30 3.82
1836 1993 3.126831 GCTCTGTATCTGGCACACATAC 58.873 50.000 0.00 0.00 39.99 2.39
1840 1997 6.071896 GCTCTGTATCTGGCACACATACTATA 60.072 42.308 7.60 0.00 40.18 1.31
1842 1999 8.422577 TCTGTATCTGGCACACATACTATATT 57.577 34.615 7.60 0.00 40.18 1.28
1887 2044 7.987820 TGGGACATCCATTATCAGAATTGATA 58.012 34.615 0.00 0.00 41.53 2.15
1948 2106 2.137523 CATCAATCGCCGATCATGACA 58.862 47.619 11.66 0.00 0.00 3.58
1953 2111 0.179076 TCGCCGATCATGACATGCTT 60.179 50.000 10.76 0.54 0.00 3.91
2242 2400 1.728323 TCCCTCACATCCACAAGTCA 58.272 50.000 0.00 0.00 0.00 3.41
2342 2500 7.414098 CCCTTGTTATGTTGTGCTATCTGTTAC 60.414 40.741 0.00 0.00 0.00 2.50
2388 2546 8.408043 TGAATAGGTTGTCTGAATTTGTGATT 57.592 30.769 0.00 0.00 0.00 2.57
2484 2642 4.957296 TGGTTTCCTGAAGACTAGACAAC 58.043 43.478 0.00 0.00 0.00 3.32
2489 2647 3.578716 TCCTGAAGACTAGACAACCCTTG 59.421 47.826 0.00 0.00 0.00 3.61
2510 2668 6.652481 CCTTGCTATTCGTCTTCATGGATATT 59.348 38.462 0.00 0.00 0.00 1.28
2626 2786 8.818141 TGTATAGTTTCTCTTGTGAAGAACAG 57.182 34.615 0.00 0.00 40.74 3.16
2729 2889 1.215647 CGTACCTGGCAGAGTGGTC 59.784 63.158 17.94 6.84 35.48 4.02
2730 2890 1.597461 GTACCTGGCAGAGTGGTCC 59.403 63.158 17.94 0.00 35.48 4.46
2731 2891 0.905337 GTACCTGGCAGAGTGGTCCT 60.905 60.000 17.94 0.00 35.48 3.85
2732 2892 0.178903 TACCTGGCAGAGTGGTCCTT 60.179 55.000 17.94 0.00 35.48 3.36
2733 2893 1.002868 CCTGGCAGAGTGGTCCTTG 60.003 63.158 17.94 0.00 0.00 3.61
2734 2894 1.002868 CTGGCAGAGTGGTCCTTGG 60.003 63.158 9.42 0.00 0.00 3.61
2735 2895 1.770110 TGGCAGAGTGGTCCTTGGT 60.770 57.895 0.00 0.00 0.00 3.67
2736 2896 1.352622 TGGCAGAGTGGTCCTTGGTT 61.353 55.000 0.00 0.00 0.00 3.67
2737 2897 0.890996 GGCAGAGTGGTCCTTGGTTG 60.891 60.000 0.00 0.00 0.00 3.77
2738 2898 0.108585 GCAGAGTGGTCCTTGGTTGA 59.891 55.000 0.00 0.00 0.00 3.18
2739 2899 1.879796 GCAGAGTGGTCCTTGGTTGAG 60.880 57.143 0.00 0.00 0.00 3.02
2740 2900 1.059913 AGAGTGGTCCTTGGTTGAGG 58.940 55.000 0.00 0.00 38.20 3.86
2741 2901 0.606673 GAGTGGTCCTTGGTTGAGGC 60.607 60.000 0.00 0.00 36.71 4.70
2742 2902 1.062488 AGTGGTCCTTGGTTGAGGCT 61.062 55.000 0.00 0.00 36.71 4.58
2743 2903 0.890996 GTGGTCCTTGGTTGAGGCTG 60.891 60.000 0.00 0.00 36.71 4.85
2744 2904 1.352622 TGGTCCTTGGTTGAGGCTGT 61.353 55.000 0.00 0.00 36.71 4.40
2745 2905 0.690762 GGTCCTTGGTTGAGGCTGTA 59.309 55.000 0.00 0.00 36.71 2.74
2746 2906 1.339151 GGTCCTTGGTTGAGGCTGTAG 60.339 57.143 0.00 0.00 36.71 2.74
2747 2907 1.348036 GTCCTTGGTTGAGGCTGTAGT 59.652 52.381 0.00 0.00 36.71 2.73
2748 2908 1.347707 TCCTTGGTTGAGGCTGTAGTG 59.652 52.381 0.00 0.00 36.71 2.74
2749 2909 1.347707 CCTTGGTTGAGGCTGTAGTGA 59.652 52.381 0.00 0.00 0.00 3.41
2750 2910 2.224523 CCTTGGTTGAGGCTGTAGTGAA 60.225 50.000 0.00 0.00 0.00 3.18
2751 2911 2.543777 TGGTTGAGGCTGTAGTGAAC 57.456 50.000 0.00 0.00 0.00 3.18
2752 2912 1.765904 TGGTTGAGGCTGTAGTGAACA 59.234 47.619 0.00 0.00 36.42 3.18
2762 2922 3.021269 TGTAGTGAACAGCTACAACGG 57.979 47.619 3.07 0.00 43.79 4.44
2763 2923 2.288579 TGTAGTGAACAGCTACAACGGG 60.289 50.000 3.07 0.00 43.79 5.28
2764 2924 1.045407 AGTGAACAGCTACAACGGGA 58.955 50.000 0.00 0.00 0.00 5.14
2765 2925 1.145803 GTGAACAGCTACAACGGGAC 58.854 55.000 0.00 0.00 0.00 4.46
2766 2926 1.045407 TGAACAGCTACAACGGGACT 58.955 50.000 0.00 0.00 0.00 3.85
2767 2927 1.270094 TGAACAGCTACAACGGGACTG 60.270 52.381 0.00 0.00 0.00 3.51
2768 2928 0.034896 AACAGCTACAACGGGACTGG 59.965 55.000 0.00 0.00 32.60 4.00
2769 2929 1.079127 CAGCTACAACGGGACTGGG 60.079 63.158 0.00 0.00 0.00 4.45
2770 2930 1.535687 AGCTACAACGGGACTGGGT 60.536 57.895 0.00 0.00 0.00 4.51
2771 2931 1.125711 AGCTACAACGGGACTGGGTT 61.126 55.000 0.00 0.00 0.00 4.11
2772 2932 0.250597 GCTACAACGGGACTGGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
2773 2933 1.816572 GCTACAACGGGACTGGGTTTT 60.817 52.381 0.00 0.00 0.00 2.43
2774 2934 1.877443 CTACAACGGGACTGGGTTTTG 59.123 52.381 0.00 0.00 0.00 2.44
2775 2935 0.033894 ACAACGGGACTGGGTTTTGT 60.034 50.000 0.00 0.00 0.00 2.83
2776 2936 0.666374 CAACGGGACTGGGTTTTGTC 59.334 55.000 0.00 0.00 0.00 3.18
2777 2937 0.549469 AACGGGACTGGGTTTTGTCT 59.451 50.000 0.00 0.00 34.01 3.41
2778 2938 0.179029 ACGGGACTGGGTTTTGTCTG 60.179 55.000 0.00 0.00 34.01 3.51
2779 2939 0.179029 CGGGACTGGGTTTTGTCTGT 60.179 55.000 0.00 0.00 34.01 3.41
2780 2940 1.605753 GGGACTGGGTTTTGTCTGTC 58.394 55.000 0.00 0.00 34.01 3.51
2781 2941 1.226746 GGACTGGGTTTTGTCTGTCG 58.773 55.000 0.00 0.00 34.20 4.35
2782 2942 1.202604 GGACTGGGTTTTGTCTGTCGA 60.203 52.381 0.00 0.00 34.20 4.20
2783 2943 2.550208 GGACTGGGTTTTGTCTGTCGAT 60.550 50.000 0.00 0.00 34.20 3.59
2784 2944 3.306502 GGACTGGGTTTTGTCTGTCGATA 60.307 47.826 0.00 0.00 34.20 2.92
2785 2945 4.504858 GACTGGGTTTTGTCTGTCGATAT 58.495 43.478 0.00 0.00 0.00 1.63
2786 2946 4.906618 ACTGGGTTTTGTCTGTCGATATT 58.093 39.130 0.00 0.00 0.00 1.28
2787 2947 5.313712 ACTGGGTTTTGTCTGTCGATATTT 58.686 37.500 0.00 0.00 0.00 1.40
2788 2948 5.768164 ACTGGGTTTTGTCTGTCGATATTTT 59.232 36.000 0.00 0.00 0.00 1.82
2789 2949 6.072673 ACTGGGTTTTGTCTGTCGATATTTTC 60.073 38.462 0.00 0.00 0.00 2.29
2790 2950 6.001460 TGGGTTTTGTCTGTCGATATTTTCT 58.999 36.000 0.00 0.00 0.00 2.52
2791 2951 7.162761 TGGGTTTTGTCTGTCGATATTTTCTA 58.837 34.615 0.00 0.00 0.00 2.10
2792 2952 7.827236 TGGGTTTTGTCTGTCGATATTTTCTAT 59.173 33.333 0.00 0.00 0.00 1.98
2793 2953 8.122952 GGGTTTTGTCTGTCGATATTTTCTATG 58.877 37.037 0.00 0.00 0.00 2.23
2794 2954 7.640240 GGTTTTGTCTGTCGATATTTTCTATGC 59.360 37.037 0.00 0.00 0.00 3.14
2795 2955 6.510746 TTGTCTGTCGATATTTTCTATGCG 57.489 37.500 0.00 0.00 0.00 4.73
2796 2956 5.588240 TGTCTGTCGATATTTTCTATGCGT 58.412 37.500 0.00 0.00 0.00 5.24
2797 2957 5.685954 TGTCTGTCGATATTTTCTATGCGTC 59.314 40.000 0.00 0.00 0.00 5.19
2798 2958 5.915758 GTCTGTCGATATTTTCTATGCGTCT 59.084 40.000 0.00 0.00 0.00 4.18
2799 2959 7.076362 GTCTGTCGATATTTTCTATGCGTCTA 58.924 38.462 0.00 0.00 0.00 2.59
2800 2960 7.751348 GTCTGTCGATATTTTCTATGCGTCTAT 59.249 37.037 0.00 0.00 0.00 1.98
2801 2961 7.750903 TCTGTCGATATTTTCTATGCGTCTATG 59.249 37.037 0.00 0.00 0.00 2.23
2802 2962 7.590279 TGTCGATATTTTCTATGCGTCTATGA 58.410 34.615 0.00 0.00 0.00 2.15
2803 2963 8.079809 TGTCGATATTTTCTATGCGTCTATGAA 58.920 33.333 0.00 0.00 0.00 2.57
2804 2964 8.366666 GTCGATATTTTCTATGCGTCTATGAAC 58.633 37.037 0.00 0.00 0.00 3.18
2805 2965 8.079809 TCGATATTTTCTATGCGTCTATGAACA 58.920 33.333 0.00 0.00 0.00 3.18
2806 2966 8.368857 CGATATTTTCTATGCGTCTATGAACAG 58.631 37.037 0.00 0.00 0.00 3.16
2807 2967 9.197694 GATATTTTCTATGCGTCTATGAACAGT 57.802 33.333 0.00 0.00 0.00 3.55
2809 2969 7.987268 TTTTCTATGCGTCTATGAACAGTAG 57.013 36.000 0.00 0.00 0.00 2.57
2810 2970 5.109662 TCTATGCGTCTATGAACAGTAGC 57.890 43.478 0.00 0.00 0.00 3.58
2811 2971 4.822350 TCTATGCGTCTATGAACAGTAGCT 59.178 41.667 0.00 0.00 0.00 3.32
2812 2972 3.150848 TGCGTCTATGAACAGTAGCTG 57.849 47.619 0.00 0.00 37.52 4.24
2813 2973 2.159240 TGCGTCTATGAACAGTAGCTGG 60.159 50.000 0.00 0.00 35.51 4.85
2814 2974 2.159226 GCGTCTATGAACAGTAGCTGGT 60.159 50.000 0.00 0.00 35.51 4.00
2819 2979 3.534721 GAACAGTAGCTGGTCACCC 57.465 57.895 9.08 0.00 46.41 4.61
2820 2980 0.036294 GAACAGTAGCTGGTCACCCC 60.036 60.000 9.08 0.00 46.41 4.95
2821 2981 0.473886 AACAGTAGCTGGTCACCCCT 60.474 55.000 0.00 0.00 35.51 4.79
2822 2982 0.473886 ACAGTAGCTGGTCACCCCTT 60.474 55.000 0.00 0.00 35.51 3.95
2823 2983 0.036010 CAGTAGCTGGTCACCCCTTG 60.036 60.000 0.00 0.00 0.00 3.61
2824 2984 0.473886 AGTAGCTGGTCACCCCTTGT 60.474 55.000 0.00 0.00 0.00 3.16
2825 2985 0.036294 GTAGCTGGTCACCCCTTGTC 60.036 60.000 0.00 0.00 0.00 3.18
2826 2986 0.472925 TAGCTGGTCACCCCTTGTCA 60.473 55.000 0.00 0.00 0.00 3.58
2827 2987 1.136329 AGCTGGTCACCCCTTGTCAT 61.136 55.000 0.00 0.00 0.00 3.06
2828 2988 0.678048 GCTGGTCACCCCTTGTCATC 60.678 60.000 0.00 0.00 0.00 2.92
2829 2989 0.035056 CTGGTCACCCCTTGTCATCC 60.035 60.000 0.00 0.00 0.00 3.51
2830 2990 0.475632 TGGTCACCCCTTGTCATCCT 60.476 55.000 0.00 0.00 0.00 3.24
2831 2991 0.698818 GGTCACCCCTTGTCATCCTT 59.301 55.000 0.00 0.00 0.00 3.36
2832 2992 1.614317 GGTCACCCCTTGTCATCCTTG 60.614 57.143 0.00 0.00 0.00 3.61
2833 2993 0.038166 TCACCCCTTGTCATCCTTGC 59.962 55.000 0.00 0.00 0.00 4.01
2834 2994 0.251297 CACCCCTTGTCATCCTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
2835 2995 0.482446 ACCCCTTGTCATCCTTGCAA 59.518 50.000 0.00 0.00 0.00 4.08
2836 2996 0.890683 CCCCTTGTCATCCTTGCAAC 59.109 55.000 0.00 0.00 0.00 4.17
2837 2997 0.890683 CCCTTGTCATCCTTGCAACC 59.109 55.000 0.00 0.00 0.00 3.77
2838 2998 0.523072 CCTTGTCATCCTTGCAACCG 59.477 55.000 0.00 0.00 0.00 4.44
2839 2999 0.109597 CTTGTCATCCTTGCAACCGC 60.110 55.000 0.00 0.00 39.24 5.68
2848 3008 4.651585 TGCAACCGCATTTCTTGC 57.348 50.000 0.00 0.00 45.36 4.01
2935 3095 2.441001 AGTATTCTCCTGGATGGCCAAG 59.559 50.000 10.96 1.74 45.41 3.61
2995 3155 2.356665 TACATGTGTTTGGCTGGTGT 57.643 45.000 9.11 0.00 0.00 4.16
3052 3212 4.065088 TGGATGATTGAGTAATTAGCGGC 58.935 43.478 0.00 0.00 0.00 6.53
3062 3222 2.103537 AATTAGCGGCTGTTAACGGT 57.896 45.000 13.86 4.83 43.70 4.83
3115 3278 4.565166 CGACTCGATCTAGCTAGATACCAG 59.435 50.000 31.49 26.44 42.79 4.00
3124 3287 6.953101 TCTAGCTAGATACCAGGATCTGTAG 58.047 44.000 19.72 2.05 36.80 2.74
3140 3303 9.685276 AGGATCTGTAGAATATGACTATCTCTG 57.315 37.037 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.778993 CGATGAACTTTATTCAAACTCAATGAT 57.221 29.630 0.00 0.00 31.55 2.45
66 67 8.998377 TCGATGAACTTTATTCAAACTCAATGA 58.002 29.630 0.00 0.00 31.55 2.57
67 68 9.611284 TTCGATGAACTTTATTCAAACTCAATG 57.389 29.630 0.00 0.00 31.55 2.82
68 69 9.831737 CTTCGATGAACTTTATTCAAACTCAAT 57.168 29.630 0.00 0.00 31.55 2.57
69 70 8.836413 ACTTCGATGAACTTTATTCAAACTCAA 58.164 29.630 5.16 0.00 31.55 3.02
70 71 8.378172 ACTTCGATGAACTTTATTCAAACTCA 57.622 30.769 5.16 0.00 31.55 3.41
71 72 9.107367 CAACTTCGATGAACTTTATTCAAACTC 57.893 33.333 5.16 0.00 31.55 3.01
72 73 8.836413 TCAACTTCGATGAACTTTATTCAAACT 58.164 29.630 5.16 0.00 31.55 2.66
73 74 9.445786 TTCAACTTCGATGAACTTTATTCAAAC 57.554 29.630 5.16 0.00 32.10 2.93
76 77 9.663904 CTTTTCAACTTCGATGAACTTTATTCA 57.336 29.630 5.16 0.00 36.57 2.57
77 78 9.878599 TCTTTTCAACTTCGATGAACTTTATTC 57.121 29.630 5.16 0.00 36.57 1.75
78 79 9.884465 CTCTTTTCAACTTCGATGAACTTTATT 57.116 29.630 5.16 0.00 36.57 1.40
79 80 9.057089 ACTCTTTTCAACTTCGATGAACTTTAT 57.943 29.630 5.16 0.00 36.57 1.40
80 81 8.433421 ACTCTTTTCAACTTCGATGAACTTTA 57.567 30.769 5.16 0.00 36.57 1.85
81 82 7.321745 ACTCTTTTCAACTTCGATGAACTTT 57.678 32.000 5.16 0.00 36.57 2.66
82 83 6.927294 ACTCTTTTCAACTTCGATGAACTT 57.073 33.333 5.16 0.00 36.57 2.66
83 84 6.538742 TGAACTCTTTTCAACTTCGATGAACT 59.461 34.615 5.16 0.00 36.57 3.01
84 85 6.715464 TGAACTCTTTTCAACTTCGATGAAC 58.285 36.000 5.16 0.00 36.57 3.18
85 86 6.918892 TGAACTCTTTTCAACTTCGATGAA 57.081 33.333 5.16 0.22 35.11 2.57
86 87 6.147821 GGATGAACTCTTTTCAACTTCGATGA 59.852 38.462 5.16 0.00 31.55 2.92
87 88 6.073058 TGGATGAACTCTTTTCAACTTCGATG 60.073 38.462 0.00 0.00 31.55 3.84
88 89 5.997746 TGGATGAACTCTTTTCAACTTCGAT 59.002 36.000 0.00 0.00 31.55 3.59
89 90 5.364778 TGGATGAACTCTTTTCAACTTCGA 58.635 37.500 0.00 0.00 31.55 3.71
90 91 5.673337 TGGATGAACTCTTTTCAACTTCG 57.327 39.130 0.00 0.00 31.55 3.79
91 92 8.877808 AAATTGGATGAACTCTTTTCAACTTC 57.122 30.769 0.00 0.00 31.55 3.01
139 140 7.094762 TGCGTTTTAAAATTGGTGAACCTTTTT 60.095 29.630 3.52 14.14 36.61 1.94
140 141 6.371825 TGCGTTTTAAAATTGGTGAACCTTTT 59.628 30.769 3.52 3.29 36.82 2.27
141 142 5.875359 TGCGTTTTAAAATTGGTGAACCTTT 59.125 32.000 3.52 0.00 36.82 3.11
142 143 5.420409 TGCGTTTTAAAATTGGTGAACCTT 58.580 33.333 3.52 0.00 36.82 3.50
143 144 5.012328 TGCGTTTTAAAATTGGTGAACCT 57.988 34.783 3.52 0.00 36.82 3.50
144 145 5.915812 ATGCGTTTTAAAATTGGTGAACC 57.084 34.783 3.52 0.00 0.00 3.62
145 146 9.364110 CTTTAATGCGTTTTAAAATTGGTGAAC 57.636 29.630 3.52 0.00 32.31 3.18
146 147 9.314321 TCTTTAATGCGTTTTAAAATTGGTGAA 57.686 25.926 3.52 0.00 32.31 3.18
147 148 8.873215 TCTTTAATGCGTTTTAAAATTGGTGA 57.127 26.923 3.52 0.00 32.31 4.02
148 149 9.922305 TTTCTTTAATGCGTTTTAAAATTGGTG 57.078 25.926 3.52 0.00 32.31 4.17
159 160 9.753669 CTTCTTTTTGTTTTCTTTAATGCGTTT 57.246 25.926 0.00 0.00 0.00 3.60
160 161 9.145865 TCTTCTTTTTGTTTTCTTTAATGCGTT 57.854 25.926 0.00 0.00 0.00 4.84
161 162 8.696410 TCTTCTTTTTGTTTTCTTTAATGCGT 57.304 26.923 0.00 0.00 0.00 5.24
162 163 9.965748 TTTCTTCTTTTTGTTTTCTTTAATGCG 57.034 25.926 0.00 0.00 0.00 4.73
199 200 9.942850 TTCCTTCTTTCTTTTTCATTTTGTCTT 57.057 25.926 0.00 0.00 0.00 3.01
200 201 9.942850 TTTCCTTCTTTCTTTTTCATTTTGTCT 57.057 25.926 0.00 0.00 0.00 3.41
210 211 9.871238 GGTTCTACTTTTTCCTTCTTTCTTTTT 57.129 29.630 0.00 0.00 0.00 1.94
211 212 8.188799 CGGTTCTACTTTTTCCTTCTTTCTTTT 58.811 33.333 0.00 0.00 0.00 2.27
212 213 7.555195 TCGGTTCTACTTTTTCCTTCTTTCTTT 59.445 33.333 0.00 0.00 0.00 2.52
213 214 7.052248 TCGGTTCTACTTTTTCCTTCTTTCTT 58.948 34.615 0.00 0.00 0.00 2.52
214 215 6.589135 TCGGTTCTACTTTTTCCTTCTTTCT 58.411 36.000 0.00 0.00 0.00 2.52
215 216 6.856135 TCGGTTCTACTTTTTCCTTCTTTC 57.144 37.500 0.00 0.00 0.00 2.62
216 217 6.827251 ACTTCGGTTCTACTTTTTCCTTCTTT 59.173 34.615 0.00 0.00 0.00 2.52
217 218 6.354938 ACTTCGGTTCTACTTTTTCCTTCTT 58.645 36.000 0.00 0.00 0.00 2.52
218 219 5.926663 ACTTCGGTTCTACTTTTTCCTTCT 58.073 37.500 0.00 0.00 0.00 2.85
219 220 7.719778 TTACTTCGGTTCTACTTTTTCCTTC 57.280 36.000 0.00 0.00 0.00 3.46
220 221 7.989170 TCTTTACTTCGGTTCTACTTTTTCCTT 59.011 33.333 0.00 0.00 0.00 3.36
221 222 7.503549 TCTTTACTTCGGTTCTACTTTTTCCT 58.496 34.615 0.00 0.00 0.00 3.36
222 223 7.719778 TCTTTACTTCGGTTCTACTTTTTCC 57.280 36.000 0.00 0.00 0.00 3.13
223 224 9.595357 CATTCTTTACTTCGGTTCTACTTTTTC 57.405 33.333 0.00 0.00 0.00 2.29
224 225 9.333724 TCATTCTTTACTTCGGTTCTACTTTTT 57.666 29.630 0.00 0.00 0.00 1.94
225 226 8.897872 TCATTCTTTACTTCGGTTCTACTTTT 57.102 30.769 0.00 0.00 0.00 2.27
227 228 9.804758 CTATCATTCTTTACTTCGGTTCTACTT 57.195 33.333 0.00 0.00 0.00 2.24
228 229 9.186837 TCTATCATTCTTTACTTCGGTTCTACT 57.813 33.333 0.00 0.00 0.00 2.57
229 230 9.798994 TTCTATCATTCTTTACTTCGGTTCTAC 57.201 33.333 0.00 0.00 0.00 2.59
231 232 9.720769 TTTTCTATCATTCTTTACTTCGGTTCT 57.279 29.630 0.00 0.00 0.00 3.01
232 233 9.974750 CTTTTCTATCATTCTTTACTTCGGTTC 57.025 33.333 0.00 0.00 0.00 3.62
233 234 9.720769 TCTTTTCTATCATTCTTTACTTCGGTT 57.279 29.630 0.00 0.00 0.00 4.44
234 235 9.372369 CTCTTTTCTATCATTCTTTACTTCGGT 57.628 33.333 0.00 0.00 0.00 4.69
235 236 9.587772 TCTCTTTTCTATCATTCTTTACTTCGG 57.412 33.333 0.00 0.00 0.00 4.30
254 255 9.057089 CCAGTAGTTGACTTATTGTTCTCTTTT 57.943 33.333 0.00 0.00 35.64 2.27
255 256 7.661847 CCCAGTAGTTGACTTATTGTTCTCTTT 59.338 37.037 0.00 0.00 35.64 2.52
256 257 7.162082 CCCAGTAGTTGACTTATTGTTCTCTT 58.838 38.462 0.00 0.00 35.64 2.85
257 258 6.295916 CCCCAGTAGTTGACTTATTGTTCTCT 60.296 42.308 0.00 0.00 35.64 3.10
258 259 5.875359 CCCCAGTAGTTGACTTATTGTTCTC 59.125 44.000 0.00 0.00 35.64 2.87
259 260 5.803470 GCCCCAGTAGTTGACTTATTGTTCT 60.803 44.000 0.00 0.00 35.64 3.01
260 261 4.395231 GCCCCAGTAGTTGACTTATTGTTC 59.605 45.833 0.00 0.00 35.64 3.18
261 262 4.042934 AGCCCCAGTAGTTGACTTATTGTT 59.957 41.667 0.00 0.00 35.64 2.83
262 263 3.587506 AGCCCCAGTAGTTGACTTATTGT 59.412 43.478 0.00 0.00 35.64 2.71
263 264 4.222124 AGCCCCAGTAGTTGACTTATTG 57.778 45.455 0.00 0.00 35.64 1.90
264 265 4.929146 AAGCCCCAGTAGTTGACTTATT 57.071 40.909 0.00 0.00 35.64 1.40
265 266 4.141688 GCTAAGCCCCAGTAGTTGACTTAT 60.142 45.833 0.00 0.00 35.64 1.73
266 267 3.197116 GCTAAGCCCCAGTAGTTGACTTA 59.803 47.826 0.00 0.00 35.64 2.24
267 268 2.027100 GCTAAGCCCCAGTAGTTGACTT 60.027 50.000 0.00 0.00 35.64 3.01
268 269 1.555533 GCTAAGCCCCAGTAGTTGACT 59.444 52.381 0.00 0.00 39.82 3.41
269 270 1.407025 GGCTAAGCCCCAGTAGTTGAC 60.407 57.143 0.00 0.00 44.06 3.18
270 271 0.909623 GGCTAAGCCCCAGTAGTTGA 59.090 55.000 0.00 0.00 44.06 3.18
271 272 3.478540 GGCTAAGCCCCAGTAGTTG 57.521 57.895 0.00 0.00 44.06 3.16
282 283 1.745653 GTTCCAATCACCAGGCTAAGC 59.254 52.381 0.00 0.00 0.00 3.09
283 284 2.009774 CGTTCCAATCACCAGGCTAAG 58.990 52.381 0.00 0.00 0.00 2.18
284 285 1.626321 TCGTTCCAATCACCAGGCTAA 59.374 47.619 0.00 0.00 0.00 3.09
285 286 1.271856 TCGTTCCAATCACCAGGCTA 58.728 50.000 0.00 0.00 0.00 3.93
286 287 0.400213 TTCGTTCCAATCACCAGGCT 59.600 50.000 0.00 0.00 0.00 4.58
287 288 0.804989 CTTCGTTCCAATCACCAGGC 59.195 55.000 0.00 0.00 0.00 4.85
288 289 0.804989 GCTTCGTTCCAATCACCAGG 59.195 55.000 0.00 0.00 0.00 4.45
289 290 0.804989 GGCTTCGTTCCAATCACCAG 59.195 55.000 0.00 0.00 0.00 4.00
290 291 0.400213 AGGCTTCGTTCCAATCACCA 59.600 50.000 0.00 0.00 0.00 4.17
291 292 1.087501 GAGGCTTCGTTCCAATCACC 58.912 55.000 0.00 0.00 0.00 4.02
292 293 1.464997 GTGAGGCTTCGTTCCAATCAC 59.535 52.381 0.00 0.00 0.00 3.06
293 294 1.610624 GGTGAGGCTTCGTTCCAATCA 60.611 52.381 0.00 0.00 0.00 2.57
294 295 1.087501 GGTGAGGCTTCGTTCCAATC 58.912 55.000 0.00 0.00 0.00 2.67
295 296 0.673644 CGGTGAGGCTTCGTTCCAAT 60.674 55.000 0.00 0.00 0.00 3.16
296 297 1.301401 CGGTGAGGCTTCGTTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
297 298 2.342279 CGGTGAGGCTTCGTTCCA 59.658 61.111 0.00 0.00 0.00 3.53
298 299 3.119096 GCGGTGAGGCTTCGTTCC 61.119 66.667 0.00 0.00 0.00 3.62
299 300 3.479269 CGCGGTGAGGCTTCGTTC 61.479 66.667 0.00 0.00 0.00 3.95
300 301 3.509137 TTCGCGGTGAGGCTTCGTT 62.509 57.895 6.13 0.00 0.00 3.85
301 302 3.916392 CTTCGCGGTGAGGCTTCGT 62.916 63.158 6.13 0.00 0.00 3.85
302 303 3.181967 CTTCGCGGTGAGGCTTCG 61.182 66.667 6.13 0.00 0.00 3.79
303 304 2.048127 ACTTCGCGGTGAGGCTTC 60.048 61.111 6.13 0.00 0.00 3.86
304 305 2.357517 CACTTCGCGGTGAGGCTT 60.358 61.111 6.13 0.00 39.34 4.35
305 306 4.379243 CCACTTCGCGGTGAGGCT 62.379 66.667 15.81 0.00 39.34 4.58
306 307 4.681978 ACCACTTCGCGGTGAGGC 62.682 66.667 15.81 0.00 39.34 4.70
307 308 2.030562 AACCACTTCGCGGTGAGG 59.969 61.111 15.81 13.88 39.34 3.86
308 309 2.954753 GCAACCACTTCGCGGTGAG 61.955 63.158 15.81 9.78 39.34 3.51
309 310 2.970324 GCAACCACTTCGCGGTGA 60.970 61.111 15.81 0.00 39.34 4.02
310 311 4.368808 CGCAACCACTTCGCGGTG 62.369 66.667 6.13 7.48 45.08 4.94
314 315 1.370051 GAAACCGCAACCACTTCGC 60.370 57.895 0.00 0.00 0.00 4.70
315 316 1.083015 CGAAACCGCAACCACTTCG 60.083 57.895 0.00 0.00 33.72 3.79
316 317 0.658897 TTCGAAACCGCAACCACTTC 59.341 50.000 0.00 0.00 0.00 3.01
317 318 1.096416 TTTCGAAACCGCAACCACTT 58.904 45.000 6.47 0.00 0.00 3.16
318 319 0.379316 GTTTCGAAACCGCAACCACT 59.621 50.000 27.01 0.00 32.82 4.00
319 320 2.862700 GTTTCGAAACCGCAACCAC 58.137 52.632 27.01 2.45 32.82 4.16
328 329 0.109458 GGCAATCCGGGTTTCGAAAC 60.109 55.000 28.83 28.83 42.43 2.78
329 330 1.245376 GGGCAATCCGGGTTTCGAAA 61.245 55.000 6.47 6.47 42.43 3.46
330 331 1.676303 GGGCAATCCGGGTTTCGAA 60.676 57.895 0.00 0.00 42.43 3.71
331 332 2.045731 GGGCAATCCGGGTTTCGA 60.046 61.111 0.00 0.00 42.43 3.71
332 333 3.138128 GGGGCAATCCGGGTTTCG 61.138 66.667 0.00 0.00 36.01 3.46
333 334 2.758327 GGGGGCAATCCGGGTTTC 60.758 66.667 0.00 0.00 36.01 2.78
334 335 2.469563 AATGGGGGCAATCCGGGTTT 62.470 55.000 0.00 0.00 36.01 3.27
335 336 2.469563 AAATGGGGGCAATCCGGGTT 62.470 55.000 0.00 0.00 36.01 4.11
336 337 2.469563 AAAATGGGGGCAATCCGGGT 62.470 55.000 0.00 0.00 36.01 5.28
337 338 1.271127 AAAAATGGGGGCAATCCGGG 61.271 55.000 0.00 0.00 36.01 5.73
338 339 2.295904 AAAAATGGGGGCAATCCGG 58.704 52.632 0.00 0.00 36.01 5.14
353 354 5.532025 AATTTGTTTTCCGAACGCAAAAA 57.468 30.435 11.16 0.88 33.60 1.94
354 355 6.830114 ATAATTTGTTTTCCGAACGCAAAA 57.170 29.167 11.16 0.00 33.60 2.44
355 356 7.062371 CCATATAATTTGTTTTCCGAACGCAAA 59.938 33.333 10.09 10.09 34.25 3.68
356 357 6.528423 CCATATAATTTGTTTTCCGAACGCAA 59.472 34.615 0.00 0.00 0.00 4.85
357 358 6.030849 CCATATAATTTGTTTTCCGAACGCA 58.969 36.000 0.00 0.00 0.00 5.24
358 359 5.457473 CCCATATAATTTGTTTTCCGAACGC 59.543 40.000 0.00 0.00 0.00 4.84
359 360 5.457473 GCCCATATAATTTGTTTTCCGAACG 59.543 40.000 0.00 0.00 0.00 3.95
360 361 5.751509 GGCCCATATAATTTGTTTTCCGAAC 59.248 40.000 0.00 0.00 0.00 3.95
361 362 5.450688 CGGCCCATATAATTTGTTTTCCGAA 60.451 40.000 0.00 0.00 34.50 4.30
362 363 4.036971 CGGCCCATATAATTTGTTTTCCGA 59.963 41.667 0.00 0.00 34.50 4.55
363 364 4.295051 CGGCCCATATAATTTGTTTTCCG 58.705 43.478 0.00 0.00 0.00 4.30
364 365 4.627058 CCGGCCCATATAATTTGTTTTCC 58.373 43.478 0.00 0.00 0.00 3.13
365 366 4.055360 GCCGGCCCATATAATTTGTTTTC 58.945 43.478 18.11 0.00 0.00 2.29
366 367 3.181459 GGCCGGCCCATATAATTTGTTTT 60.181 43.478 36.64 0.00 0.00 2.43
367 368 2.367241 GGCCGGCCCATATAATTTGTTT 59.633 45.455 36.64 0.00 0.00 2.83
368 369 1.967779 GGCCGGCCCATATAATTTGTT 59.032 47.619 36.64 0.00 0.00 2.83
369 370 1.627864 GGCCGGCCCATATAATTTGT 58.372 50.000 36.64 0.00 0.00 2.83
388 389 2.937379 CTTGCAGAGCCCCGAGATGG 62.937 65.000 0.00 0.00 37.55 3.51
389 390 1.523258 CTTGCAGAGCCCCGAGATG 60.523 63.158 0.00 0.00 0.00 2.90
390 391 2.906458 CTTGCAGAGCCCCGAGAT 59.094 61.111 0.00 0.00 0.00 2.75
391 392 4.087892 GCTTGCAGAGCCCCGAGA 62.088 66.667 9.03 0.00 46.01 4.04
399 400 2.032634 TAAACGGGCGCTTGCAGAG 61.033 57.895 7.64 0.00 41.71 3.35
400 401 2.031314 TAAACGGGCGCTTGCAGA 59.969 55.556 7.64 0.00 41.71 4.26
401 402 2.175811 GTAAACGGGCGCTTGCAG 59.824 61.111 7.64 0.00 41.71 4.41
402 403 2.592001 TGTAAACGGGCGCTTGCA 60.592 55.556 7.64 0.00 41.71 4.08
403 404 1.847890 TTCTGTAAACGGGCGCTTGC 61.848 55.000 7.64 0.00 38.11 4.01
404 405 0.802494 ATTCTGTAAACGGGCGCTTG 59.198 50.000 7.64 1.96 0.00 4.01
405 406 2.004733 GTATTCTGTAAACGGGCGCTT 58.995 47.619 7.64 0.00 0.00 4.68
406 407 1.066716 TGTATTCTGTAAACGGGCGCT 60.067 47.619 7.64 0.00 0.00 5.92
407 408 1.061566 GTGTATTCTGTAAACGGGCGC 59.938 52.381 0.00 0.00 0.00 6.53
408 409 1.322338 CGTGTATTCTGTAAACGGGCG 59.678 52.381 0.00 0.00 0.00 6.13
409 410 2.340337 ACGTGTATTCTGTAAACGGGC 58.660 47.619 0.00 0.00 38.52 6.13
410 411 5.443170 CGTTAACGTGTATTCTGTAAACGGG 60.443 44.000 19.75 0.00 38.52 5.28
411 412 5.532041 CGTTAACGTGTATTCTGTAAACGG 58.468 41.667 19.75 0.00 38.52 4.44
412 413 5.443170 CCCGTTAACGTGTATTCTGTAAACG 60.443 44.000 25.15 5.19 40.00 3.60
413 414 5.668621 GCCCGTTAACGTGTATTCTGTAAAC 60.669 44.000 25.15 0.00 37.74 2.01
414 415 4.388469 GCCCGTTAACGTGTATTCTGTAAA 59.612 41.667 25.15 0.00 37.74 2.01
415 416 3.925913 GCCCGTTAACGTGTATTCTGTAA 59.074 43.478 25.15 0.00 37.74 2.41
416 417 3.510719 GCCCGTTAACGTGTATTCTGTA 58.489 45.455 25.15 0.00 37.74 2.74
417 418 2.340337 GCCCGTTAACGTGTATTCTGT 58.660 47.619 25.15 0.00 37.74 3.41
418 419 1.322338 CGCCCGTTAACGTGTATTCTG 59.678 52.381 25.15 8.26 37.74 3.02
419 420 1.632422 CGCCCGTTAACGTGTATTCT 58.368 50.000 25.15 0.00 37.74 2.40
420 421 0.025384 GCGCCCGTTAACGTGTATTC 59.975 55.000 25.15 6.82 37.74 1.75
421 422 1.360931 GGCGCCCGTTAACGTGTATT 61.361 55.000 25.15 0.00 37.74 1.89
422 423 1.810853 GGCGCCCGTTAACGTGTAT 60.811 57.895 25.15 0.00 37.74 2.29
423 424 2.432285 GGCGCCCGTTAACGTGTA 60.432 61.111 25.15 0.00 37.74 2.90
424 425 4.303993 AGGCGCCCGTTAACGTGT 62.304 61.111 26.15 0.00 37.74 4.49
425 426 3.784412 CAGGCGCCCGTTAACGTG 61.784 66.667 26.15 16.40 37.74 4.49
428 429 3.799755 CAGCAGGCGCCCGTTAAC 61.800 66.667 26.15 6.31 39.83 2.01
438 439 2.332063 TCCTATTTAGTGCAGCAGGC 57.668 50.000 0.00 0.00 45.13 4.85
439 440 3.496130 CGAATCCTATTTAGTGCAGCAGG 59.504 47.826 0.00 0.00 0.00 4.85
440 441 3.059325 GCGAATCCTATTTAGTGCAGCAG 60.059 47.826 0.00 0.00 0.00 4.24
441 442 2.872245 GCGAATCCTATTTAGTGCAGCA 59.128 45.455 0.00 0.00 0.00 4.41
442 443 2.224314 GGCGAATCCTATTTAGTGCAGC 59.776 50.000 0.00 0.00 0.00 5.25
443 444 2.808543 GGGCGAATCCTATTTAGTGCAG 59.191 50.000 0.00 0.00 34.39 4.41
444 445 2.486548 GGGGCGAATCCTATTTAGTGCA 60.487 50.000 0.00 0.00 34.39 4.57
445 446 2.152016 GGGGCGAATCCTATTTAGTGC 58.848 52.381 0.00 0.00 34.39 4.40
446 447 3.071023 TCTGGGGCGAATCCTATTTAGTG 59.929 47.826 0.00 0.00 34.39 2.74
447 448 3.314693 TCTGGGGCGAATCCTATTTAGT 58.685 45.455 0.00 0.00 34.39 2.24
448 449 4.351874 TTCTGGGGCGAATCCTATTTAG 57.648 45.455 0.00 0.00 34.39 1.85
449 450 4.781775 TTTCTGGGGCGAATCCTATTTA 57.218 40.909 0.00 0.00 34.39 1.40
450 451 3.662759 TTTCTGGGGCGAATCCTATTT 57.337 42.857 0.00 0.00 34.39 1.40
451 452 3.884037 ATTTCTGGGGCGAATCCTATT 57.116 42.857 0.00 0.00 34.39 1.73
452 453 4.168101 TCTATTTCTGGGGCGAATCCTAT 58.832 43.478 0.00 0.00 34.39 2.57
453 454 3.583228 TCTATTTCTGGGGCGAATCCTA 58.417 45.455 0.00 0.00 34.39 2.94
454 455 2.408565 TCTATTTCTGGGGCGAATCCT 58.591 47.619 0.00 0.00 34.39 3.24
455 456 2.930826 TCTATTTCTGGGGCGAATCC 57.069 50.000 0.00 0.00 0.00 3.01
456 457 3.935828 GCTATCTATTTCTGGGGCGAATC 59.064 47.826 0.00 0.00 0.00 2.52
457 458 3.327757 TGCTATCTATTTCTGGGGCGAAT 59.672 43.478 0.00 0.00 0.00 3.34
458 459 2.703536 TGCTATCTATTTCTGGGGCGAA 59.296 45.455 0.00 0.00 0.00 4.70
459 460 2.300152 CTGCTATCTATTTCTGGGGCGA 59.700 50.000 0.00 0.00 0.00 5.54
460 461 2.693069 CTGCTATCTATTTCTGGGGCG 58.307 52.381 0.00 0.00 0.00 6.13
461 462 2.039613 AGCTGCTATCTATTTCTGGGGC 59.960 50.000 0.00 0.00 0.00 5.80
462 463 4.322567 GAAGCTGCTATCTATTTCTGGGG 58.677 47.826 0.90 0.00 0.00 4.96
463 464 4.041444 AGGAAGCTGCTATCTATTTCTGGG 59.959 45.833 0.90 0.00 0.00 4.45
464 465 5.226194 AGGAAGCTGCTATCTATTTCTGG 57.774 43.478 0.90 0.00 0.00 3.86
465 466 8.845413 AATTAGGAAGCTGCTATCTATTTCTG 57.155 34.615 0.90 0.00 0.00 3.02
466 467 9.859152 AAAATTAGGAAGCTGCTATCTATTTCT 57.141 29.630 0.90 0.00 0.00 2.52
467 468 9.890352 CAAAATTAGGAAGCTGCTATCTATTTC 57.110 33.333 0.90 0.00 0.00 2.17
468 469 9.632638 TCAAAATTAGGAAGCTGCTATCTATTT 57.367 29.630 0.90 7.81 0.00 1.40
469 470 9.282569 CTCAAAATTAGGAAGCTGCTATCTATT 57.717 33.333 0.90 2.14 0.00 1.73
470 471 8.654997 TCTCAAAATTAGGAAGCTGCTATCTAT 58.345 33.333 0.90 0.00 0.00 1.98
471 472 8.023021 TCTCAAAATTAGGAAGCTGCTATCTA 57.977 34.615 0.90 5.20 0.00 1.98
472 473 6.893583 TCTCAAAATTAGGAAGCTGCTATCT 58.106 36.000 0.90 6.25 0.00 1.98
473 474 7.559590 TTCTCAAAATTAGGAAGCTGCTATC 57.440 36.000 0.90 2.95 0.00 2.08
474 475 7.394359 TGTTTCTCAAAATTAGGAAGCTGCTAT 59.606 33.333 0.90 0.00 0.00 2.97
475 476 6.714810 TGTTTCTCAAAATTAGGAAGCTGCTA 59.285 34.615 0.90 0.00 0.00 3.49
476 477 5.536161 TGTTTCTCAAAATTAGGAAGCTGCT 59.464 36.000 0.00 0.00 0.00 4.24
477 478 5.631096 GTGTTTCTCAAAATTAGGAAGCTGC 59.369 40.000 0.00 0.00 0.00 5.25
478 479 6.015940 AGGTGTTTCTCAAAATTAGGAAGCTG 60.016 38.462 0.00 0.00 0.00 4.24
479 480 6.015940 CAGGTGTTTCTCAAAATTAGGAAGCT 60.016 38.462 0.00 0.00 0.00 3.74
480 481 6.152379 CAGGTGTTTCTCAAAATTAGGAAGC 58.848 40.000 0.00 0.00 0.00 3.86
481 482 6.152379 GCAGGTGTTTCTCAAAATTAGGAAG 58.848 40.000 0.00 0.00 0.00 3.46
482 483 5.010617 GGCAGGTGTTTCTCAAAATTAGGAA 59.989 40.000 0.00 0.00 0.00 3.36
483 484 4.522789 GGCAGGTGTTTCTCAAAATTAGGA 59.477 41.667 0.00 0.00 0.00 2.94
484 485 4.615912 CGGCAGGTGTTTCTCAAAATTAGG 60.616 45.833 0.00 0.00 0.00 2.69
485 486 4.023193 ACGGCAGGTGTTTCTCAAAATTAG 60.023 41.667 0.00 0.00 0.00 1.73
486 487 3.886505 ACGGCAGGTGTTTCTCAAAATTA 59.113 39.130 0.00 0.00 0.00 1.40
487 488 2.693074 ACGGCAGGTGTTTCTCAAAATT 59.307 40.909 0.00 0.00 0.00 1.82
488 489 2.306847 ACGGCAGGTGTTTCTCAAAAT 58.693 42.857 0.00 0.00 0.00 1.82
489 490 1.757682 ACGGCAGGTGTTTCTCAAAA 58.242 45.000 0.00 0.00 0.00 2.44
490 491 2.623878 TACGGCAGGTGTTTCTCAAA 57.376 45.000 0.00 0.00 0.00 2.69
491 492 2.103432 TCTTACGGCAGGTGTTTCTCAA 59.897 45.455 0.00 0.00 0.00 3.02
492 493 1.689813 TCTTACGGCAGGTGTTTCTCA 59.310 47.619 0.00 0.00 0.00 3.27
493 494 2.450609 TCTTACGGCAGGTGTTTCTC 57.549 50.000 0.00 0.00 0.00 2.87
494 495 2.922740 TTCTTACGGCAGGTGTTTCT 57.077 45.000 0.00 0.00 0.00 2.52
495 496 3.624900 GTTTTCTTACGGCAGGTGTTTC 58.375 45.455 0.00 0.00 0.00 2.78
496 497 2.032426 CGTTTTCTTACGGCAGGTGTTT 59.968 45.455 0.00 0.00 37.86 2.83
497 498 1.600485 CGTTTTCTTACGGCAGGTGTT 59.400 47.619 0.00 0.00 37.86 3.32
498 499 1.223187 CGTTTTCTTACGGCAGGTGT 58.777 50.000 0.00 0.00 37.86 4.16
499 500 1.070175 CACGTTTTCTTACGGCAGGTG 60.070 52.381 0.00 0.00 45.44 4.00
500 501 1.223187 CACGTTTTCTTACGGCAGGT 58.777 50.000 0.00 0.00 45.44 4.00
501 502 0.515564 CCACGTTTTCTTACGGCAGG 59.484 55.000 0.00 0.00 45.44 4.85
502 503 1.193874 GACCACGTTTTCTTACGGCAG 59.806 52.381 0.00 0.00 45.44 4.85
503 504 1.219646 GACCACGTTTTCTTACGGCA 58.780 50.000 0.00 0.00 45.44 5.69
504 505 1.193874 CTGACCACGTTTTCTTACGGC 59.806 52.381 0.00 0.00 45.44 5.68
505 506 1.796459 CCTGACCACGTTTTCTTACGG 59.204 52.381 0.00 0.00 45.44 4.02
506 507 2.473984 GACCTGACCACGTTTTCTTACG 59.526 50.000 0.00 0.00 46.52 3.18
507 508 2.804527 GGACCTGACCACGTTTTCTTAC 59.195 50.000 0.00 0.00 0.00 2.34
508 509 2.435069 TGGACCTGACCACGTTTTCTTA 59.565 45.455 0.00 0.00 34.77 2.10
509 510 1.210967 TGGACCTGACCACGTTTTCTT 59.789 47.619 0.00 0.00 34.77 2.52
510 511 0.834612 TGGACCTGACCACGTTTTCT 59.165 50.000 0.00 0.00 34.77 2.52
511 512 1.535462 CATGGACCTGACCACGTTTTC 59.465 52.381 0.00 0.00 43.03 2.29
512 513 1.604604 CATGGACCTGACCACGTTTT 58.395 50.000 0.00 0.00 43.03 2.43
540 541 1.331756 CGCTCAACACATATGGGCTTC 59.668 52.381 4.42 0.00 42.22 3.86
585 587 3.746889 TTTTGCGCTGGCCCGATG 61.747 61.111 9.73 0.00 38.85 3.84
776 790 6.071051 GGTTTTGCTCCCTGTATTTATTTCCA 60.071 38.462 0.00 0.00 0.00 3.53
777 791 6.338146 GGTTTTGCTCCCTGTATTTATTTCC 58.662 40.000 0.00 0.00 0.00 3.13
867 883 0.393673 TCCTCTCGCCTCTCTCTGTG 60.394 60.000 0.00 0.00 0.00 3.66
870 886 0.751643 GCTTCCTCTCGCCTCTCTCT 60.752 60.000 0.00 0.00 0.00 3.10
912 928 6.622896 GCAAAAGATATTTCAAGCTACACCGT 60.623 38.462 0.00 0.00 0.00 4.83
929 945 3.313249 GCAAAACCAAGCAAGCAAAAGAT 59.687 39.130 0.00 0.00 0.00 2.40
967 983 2.037367 AGCCTCCTACCTGCACGA 59.963 61.111 0.00 0.00 0.00 4.35
968 984 2.055042 AGAGCCTCCTACCTGCACG 61.055 63.158 0.00 0.00 0.00 5.34
1161 1177 3.058293 CACACACACAGAGAGAGAGAGAC 60.058 52.174 0.00 0.00 0.00 3.36
1176 1192 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1177 1193 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1179 1195 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1180 1196 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1181 1197 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1182 1198 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1183 1199 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1184 1200 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1185 1201 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1186 1202 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1187 1203 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1188 1204 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1189 1205 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1190 1206 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1191 1207 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1192 1208 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1193 1209 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
1194 1210 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
1195 1211 4.608222 CGATTATCACACACACACACACAC 60.608 45.833 0.00 0.00 0.00 3.82
1196 1212 3.492756 CGATTATCACACACACACACACA 59.507 43.478 0.00 0.00 0.00 3.72
1197 1213 3.738791 TCGATTATCACACACACACACAC 59.261 43.478 0.00 0.00 0.00 3.82
1198 1214 3.983741 TCGATTATCACACACACACACA 58.016 40.909 0.00 0.00 0.00 3.72
1199 1215 5.805486 ACTATCGATTATCACACACACACAC 59.195 40.000 1.71 0.00 0.00 3.82
1200 1216 5.961272 ACTATCGATTATCACACACACACA 58.039 37.500 1.71 0.00 0.00 3.72
1201 1217 6.752351 AGAACTATCGATTATCACACACACAC 59.248 38.462 1.71 0.00 0.00 3.82
1202 1218 6.863275 AGAACTATCGATTATCACACACACA 58.137 36.000 1.71 0.00 0.00 3.72
1203 1219 9.464714 AATAGAACTATCGATTATCACACACAC 57.535 33.333 1.71 0.00 30.26 3.82
1204 1220 9.678941 GAATAGAACTATCGATTATCACACACA 57.321 33.333 1.71 0.00 31.94 3.72
1205 1221 9.900710 AGAATAGAACTATCGATTATCACACAC 57.099 33.333 1.71 0.00 31.94 3.82
1207 1223 9.562583 GGAGAATAGAACTATCGATTATCACAC 57.437 37.037 1.71 0.00 39.32 3.82
1208 1224 8.451748 CGGAGAATAGAACTATCGATTATCACA 58.548 37.037 1.71 0.00 39.32 3.58
1209 1225 7.911205 CCGGAGAATAGAACTATCGATTATCAC 59.089 40.741 1.71 0.00 39.32 3.06
1210 1226 7.827729 TCCGGAGAATAGAACTATCGATTATCA 59.172 37.037 1.71 0.00 39.32 2.15
1211 1227 8.124199 GTCCGGAGAATAGAACTATCGATTATC 58.876 40.741 3.06 0.00 37.84 1.75
1212 1228 7.067251 GGTCCGGAGAATAGAACTATCGATTAT 59.933 40.741 3.06 0.00 31.94 1.28
1227 1243 1.807886 CGAGAACGGTCCGGAGAAT 59.192 57.895 17.28 0.00 35.72 2.40
1228 1244 2.986306 GCGAGAACGGTCCGGAGAA 61.986 63.158 17.28 0.00 40.15 2.87
1230 1246 4.831307 CGCGAGAACGGTCCGGAG 62.831 72.222 17.28 0.00 40.15 4.63
1283 1354 0.251253 TGCAACATGGCACCAGATCA 60.251 50.000 0.00 0.00 39.25 2.92
1307 1378 7.773864 TCTACAACAAATCTCGTACAAACAA 57.226 32.000 0.00 0.00 0.00 2.83
1341 1412 7.220108 TCGATAATCAATACTGACAACAGAACG 59.780 37.037 0.00 0.00 46.03 3.95
1409 1480 2.320781 CGACTAAGATGGGGGAGACAT 58.679 52.381 0.00 0.00 0.00 3.06
1437 1508 8.703604 TCTGACATAGTTTACAATAGAACAGC 57.296 34.615 0.00 0.00 0.00 4.40
1579 1653 0.971386 ACGGTACAAGTGTGGGTAGG 59.029 55.000 0.00 0.00 0.00 3.18
1637 1794 7.704899 CACGTGACTATCTCCAACAATGTTATA 59.295 37.037 10.90 0.00 0.00 0.98
1647 1804 5.007234 CACAAAAACACGTGACTATCTCCAA 59.993 40.000 25.01 0.00 35.02 3.53
1657 1814 3.433709 CTTGCATCACAAAAACACGTGA 58.566 40.909 25.01 0.00 45.62 4.35
1660 1817 2.191802 TGCTTGCATCACAAAAACACG 58.808 42.857 0.00 0.00 37.96 4.49
1703 1860 5.983333 AGAGTACATCCCCTCAAATGATT 57.017 39.130 0.00 0.00 0.00 2.57
1705 1862 4.164221 GGAAGAGTACATCCCCTCAAATGA 59.836 45.833 0.00 0.00 0.00 2.57
1710 1867 2.940514 TGGAAGAGTACATCCCCTCA 57.059 50.000 9.17 0.00 33.49 3.86
1739 1896 6.121590 TGAATCCTGCAGCATCAGTATTAAA 58.878 36.000 8.66 0.00 32.32 1.52
1772 1929 3.750130 CAGAACAAGTGAGATTGAGGGTG 59.250 47.826 0.00 0.00 34.20 4.61
1773 1930 3.392616 ACAGAACAAGTGAGATTGAGGGT 59.607 43.478 0.00 0.00 34.20 4.34
1775 1932 4.384056 ACACAGAACAAGTGAGATTGAGG 58.616 43.478 0.00 0.00 40.16 3.86
1805 1962 3.875727 CCAGATACAGAGCAAGTGAATGG 59.124 47.826 0.00 0.00 0.00 3.16
1816 1973 4.662468 AGTATGTGTGCCAGATACAGAG 57.338 45.455 18.22 0.00 41.23 3.35
1840 1997 7.178983 TCCCAAGCTGAAACTATGATCAAAAAT 59.821 33.333 0.00 0.00 0.00 1.82
1842 1999 6.009589 TCCCAAGCTGAAACTATGATCAAAA 58.990 36.000 0.00 0.00 0.00 2.44
1906 2064 8.407832 TGATGAGGTCATAATTTAAACATGCAG 58.592 33.333 0.00 0.00 36.57 4.41
1935 2093 0.041576 CAAGCATGTCATGATCGGCG 60.042 55.000 17.24 0.00 0.00 6.46
1984 2142 1.182667 TGAGCTGCCTGTGTATACGT 58.817 50.000 0.00 0.00 0.00 3.57
2110 2268 3.369892 GCTTCACCTTGAGATCCTTGCTA 60.370 47.826 0.00 0.00 0.00 3.49
2242 2400 3.244700 CCTTGGAGGTCTTGTTGATGAGT 60.245 47.826 0.00 0.00 0.00 3.41
2299 2457 4.020573 ACAAGGGATCACGAAGATACAACA 60.021 41.667 7.06 0.00 39.54 3.33
2342 2500 4.629634 TCAGGTTGTGATAATAGCAACACG 59.370 41.667 8.56 0.00 42.84 4.49
2388 2546 1.272807 AGTTACCGAAAGCTAGCCCA 58.727 50.000 12.13 0.00 0.00 5.36
2484 2642 2.874701 CCATGAAGACGAATAGCAAGGG 59.125 50.000 0.00 0.00 0.00 3.95
2489 2647 6.312426 CCTGAATATCCATGAAGACGAATAGC 59.688 42.308 0.00 0.00 0.00 2.97
2545 2705 1.973515 AGTCCAGTTGCAGTGATCTCA 59.026 47.619 0.00 0.00 0.00 3.27
2626 2786 6.161381 ACATCCATTTTGCTGTCAAAGAATC 58.839 36.000 0.00 0.00 42.50 2.52
2665 2825 7.441458 CAGATTATGAATGCACAAGAGATGAGA 59.559 37.037 0.00 0.00 0.00 3.27
2729 2889 1.347707 TCACTACAGCCTCAACCAAGG 59.652 52.381 0.00 0.00 39.62 3.61
2730 2890 2.808543 GTTCACTACAGCCTCAACCAAG 59.191 50.000 0.00 0.00 0.00 3.61
2731 2891 2.171659 TGTTCACTACAGCCTCAACCAA 59.828 45.455 0.00 0.00 31.68 3.67
2732 2892 1.765904 TGTTCACTACAGCCTCAACCA 59.234 47.619 0.00 0.00 31.68 3.67
2733 2893 2.543777 TGTTCACTACAGCCTCAACC 57.456 50.000 0.00 0.00 31.68 3.77
2742 2902 2.288579 CCCGTTGTAGCTGTTCACTACA 60.289 50.000 0.00 0.00 46.23 2.74
2743 2903 2.029649 TCCCGTTGTAGCTGTTCACTAC 60.030 50.000 0.00 0.00 40.37 2.73
2744 2904 2.029649 GTCCCGTTGTAGCTGTTCACTA 60.030 50.000 0.00 0.00 0.00 2.74
2745 2905 1.045407 TCCCGTTGTAGCTGTTCACT 58.955 50.000 0.00 0.00 0.00 3.41
2746 2906 1.145803 GTCCCGTTGTAGCTGTTCAC 58.854 55.000 0.00 0.00 0.00 3.18
2747 2907 1.045407 AGTCCCGTTGTAGCTGTTCA 58.955 50.000 0.00 0.00 0.00 3.18
2748 2908 1.429463 CAGTCCCGTTGTAGCTGTTC 58.571 55.000 0.00 0.00 0.00 3.18
2749 2909 0.034896 CCAGTCCCGTTGTAGCTGTT 59.965 55.000 0.00 0.00 0.00 3.16
2750 2910 1.671742 CCAGTCCCGTTGTAGCTGT 59.328 57.895 0.00 0.00 0.00 4.40
2751 2911 1.079127 CCCAGTCCCGTTGTAGCTG 60.079 63.158 0.00 0.00 0.00 4.24
2752 2912 1.125711 AACCCAGTCCCGTTGTAGCT 61.126 55.000 0.00 0.00 0.00 3.32
2753 2913 0.250597 AAACCCAGTCCCGTTGTAGC 60.251 55.000 0.00 0.00 0.00 3.58
2754 2914 1.877443 CAAAACCCAGTCCCGTTGTAG 59.123 52.381 0.00 0.00 0.00 2.74
2755 2915 1.212441 ACAAAACCCAGTCCCGTTGTA 59.788 47.619 0.00 0.00 0.00 2.41
2756 2916 0.033894 ACAAAACCCAGTCCCGTTGT 60.034 50.000 0.00 0.00 0.00 3.32
2757 2917 0.666374 GACAAAACCCAGTCCCGTTG 59.334 55.000 0.00 0.00 0.00 4.10
2758 2918 0.549469 AGACAAAACCCAGTCCCGTT 59.451 50.000 0.00 0.00 35.38 4.44
2759 2919 0.179029 CAGACAAAACCCAGTCCCGT 60.179 55.000 0.00 0.00 35.38 5.28
2760 2920 0.179029 ACAGACAAAACCCAGTCCCG 60.179 55.000 0.00 0.00 35.38 5.14
2761 2921 1.605753 GACAGACAAAACCCAGTCCC 58.394 55.000 0.00 0.00 35.38 4.46
2762 2922 1.202604 TCGACAGACAAAACCCAGTCC 60.203 52.381 0.00 0.00 35.38 3.85
2763 2923 2.234300 TCGACAGACAAAACCCAGTC 57.766 50.000 0.00 0.00 35.02 3.51
2764 2924 2.930826 ATCGACAGACAAAACCCAGT 57.069 45.000 0.00 0.00 0.00 4.00
2765 2925 5.880054 AAATATCGACAGACAAAACCCAG 57.120 39.130 0.00 0.00 0.00 4.45
2766 2926 6.001460 AGAAAATATCGACAGACAAAACCCA 58.999 36.000 0.00 0.00 0.00 4.51
2767 2927 6.496338 AGAAAATATCGACAGACAAAACCC 57.504 37.500 0.00 0.00 0.00 4.11
2768 2928 7.640240 GCATAGAAAATATCGACAGACAAAACC 59.360 37.037 0.00 0.00 0.00 3.27
2769 2929 7.370836 CGCATAGAAAATATCGACAGACAAAAC 59.629 37.037 0.00 0.00 0.00 2.43
2770 2930 7.064134 ACGCATAGAAAATATCGACAGACAAAA 59.936 33.333 0.00 0.00 0.00 2.44
2771 2931 6.533723 ACGCATAGAAAATATCGACAGACAAA 59.466 34.615 0.00 0.00 0.00 2.83
2772 2932 6.040247 ACGCATAGAAAATATCGACAGACAA 58.960 36.000 0.00 0.00 0.00 3.18
2773 2933 5.588240 ACGCATAGAAAATATCGACAGACA 58.412 37.500 0.00 0.00 0.00 3.41
2774 2934 5.915758 AGACGCATAGAAAATATCGACAGAC 59.084 40.000 0.00 0.00 0.00 3.51
2775 2935 6.073327 AGACGCATAGAAAATATCGACAGA 57.927 37.500 0.00 0.00 0.00 3.41
2776 2936 7.750903 TCATAGACGCATAGAAAATATCGACAG 59.249 37.037 0.00 0.00 0.00 3.51
2777 2937 7.590279 TCATAGACGCATAGAAAATATCGACA 58.410 34.615 0.00 0.00 0.00 4.35
2778 2938 8.366666 GTTCATAGACGCATAGAAAATATCGAC 58.633 37.037 0.00 0.00 0.00 4.20
2779 2939 8.079809 TGTTCATAGACGCATAGAAAATATCGA 58.920 33.333 0.00 0.00 0.00 3.59
2780 2940 8.227731 TGTTCATAGACGCATAGAAAATATCG 57.772 34.615 0.00 0.00 0.00 2.92
2781 2941 9.197694 ACTGTTCATAGACGCATAGAAAATATC 57.802 33.333 0.00 0.00 0.00 1.63
2783 2943 9.678941 CTACTGTTCATAGACGCATAGAAAATA 57.321 33.333 0.00 0.00 0.00 1.40
2784 2944 7.169982 GCTACTGTTCATAGACGCATAGAAAAT 59.830 37.037 0.00 0.00 0.00 1.82
2785 2945 6.475727 GCTACTGTTCATAGACGCATAGAAAA 59.524 38.462 0.00 0.00 0.00 2.29
2786 2946 5.977725 GCTACTGTTCATAGACGCATAGAAA 59.022 40.000 0.00 0.00 0.00 2.52
2787 2947 5.299531 AGCTACTGTTCATAGACGCATAGAA 59.700 40.000 0.00 0.00 0.00 2.10
2788 2948 4.822350 AGCTACTGTTCATAGACGCATAGA 59.178 41.667 0.00 0.00 0.00 1.98
2789 2949 4.914504 CAGCTACTGTTCATAGACGCATAG 59.085 45.833 0.00 0.00 0.00 2.23
2790 2950 4.261614 CCAGCTACTGTTCATAGACGCATA 60.262 45.833 0.00 0.00 0.00 3.14
2791 2951 3.491619 CCAGCTACTGTTCATAGACGCAT 60.492 47.826 0.00 0.00 0.00 4.73
2792 2952 2.159240 CCAGCTACTGTTCATAGACGCA 60.159 50.000 0.00 0.00 0.00 5.24
2793 2953 2.159226 ACCAGCTACTGTTCATAGACGC 60.159 50.000 0.00 0.00 0.00 5.19
2794 2954 3.128764 TGACCAGCTACTGTTCATAGACG 59.871 47.826 0.00 0.00 28.27 4.18
2795 2955 4.425520 GTGACCAGCTACTGTTCATAGAC 58.574 47.826 0.00 0.00 35.52 2.59
2796 2956 3.447586 GGTGACCAGCTACTGTTCATAGA 59.552 47.826 0.00 0.00 35.52 1.98
2797 2957 3.786635 GGTGACCAGCTACTGTTCATAG 58.213 50.000 0.00 0.00 35.52 2.23
2798 2958 3.887621 GGTGACCAGCTACTGTTCATA 57.112 47.619 0.00 0.00 35.52 2.15
2799 2959 2.770164 GGTGACCAGCTACTGTTCAT 57.230 50.000 0.00 0.00 35.52 2.57
2813 2973 1.826385 CAAGGATGACAAGGGGTGAC 58.174 55.000 0.00 0.00 0.00 3.67
2814 2974 0.038166 GCAAGGATGACAAGGGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
2815 2975 0.251297 TGCAAGGATGACAAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
2816 2976 0.482446 TTGCAAGGATGACAAGGGGT 59.518 50.000 0.00 0.00 0.00 4.95
2817 2977 0.890683 GTTGCAAGGATGACAAGGGG 59.109 55.000 0.00 0.00 0.00 4.79
2818 2978 0.890683 GGTTGCAAGGATGACAAGGG 59.109 55.000 0.00 0.00 0.00 3.95
2819 2979 0.523072 CGGTTGCAAGGATGACAAGG 59.477 55.000 0.00 0.00 0.00 3.61
2820 2980 0.109597 GCGGTTGCAAGGATGACAAG 60.110 55.000 0.00 0.00 42.15 3.16
2821 2981 1.956043 GCGGTTGCAAGGATGACAA 59.044 52.632 0.00 0.00 42.15 3.18
2822 2982 3.667087 GCGGTTGCAAGGATGACA 58.333 55.556 0.00 0.00 42.15 3.58
2839 2999 9.597999 GCCTTAATGTTTTAAAAGCAAGAAATG 57.402 29.630 0.00 0.02 31.58 2.32
2840 3000 8.783093 GGCCTTAATGTTTTAAAAGCAAGAAAT 58.217 29.630 0.00 0.00 32.30 2.17
2841 3001 7.990314 AGGCCTTAATGTTTTAAAAGCAAGAAA 59.010 29.630 0.00 0.22 32.30 2.52
2842 3002 7.505258 AGGCCTTAATGTTTTAAAAGCAAGAA 58.495 30.769 0.00 2.01 32.30 2.52
2843 3003 7.061566 AGGCCTTAATGTTTTAAAAGCAAGA 57.938 32.000 0.00 0.00 32.30 3.02
2844 3004 8.088365 ACTAGGCCTTAATGTTTTAAAAGCAAG 58.912 33.333 12.58 0.00 32.30 4.01
2845 3005 7.958088 ACTAGGCCTTAATGTTTTAAAAGCAA 58.042 30.769 12.58 0.00 32.30 3.91
2846 3006 7.533289 ACTAGGCCTTAATGTTTTAAAAGCA 57.467 32.000 12.58 3.54 32.30 3.91
2847 3007 8.708742 CAAACTAGGCCTTAATGTTTTAAAAGC 58.291 33.333 12.58 0.00 0.00 3.51
2848 3008 9.203421 CCAAACTAGGCCTTAATGTTTTAAAAG 57.797 33.333 12.58 0.00 0.00 2.27
2957 3117 9.912634 CACATGTAAAACTGAGGAAAACATTAT 57.087 29.630 0.00 0.00 0.00 1.28
2958 3118 8.908903 ACACATGTAAAACTGAGGAAAACATTA 58.091 29.630 0.00 0.00 0.00 1.90
2961 3121 6.767524 ACACATGTAAAACTGAGGAAAACA 57.232 33.333 0.00 0.00 0.00 2.83
2967 3127 4.037923 AGCCAAACACATGTAAAACTGAGG 59.962 41.667 0.00 0.00 0.00 3.86
3037 3197 4.327898 CGTTAACAGCCGCTAATTACTCAA 59.672 41.667 6.39 0.00 0.00 3.02
3052 3212 1.302511 AGCCAGCCACCGTTAACAG 60.303 57.895 6.39 0.00 0.00 3.16
3086 3249 1.328069 AGCTAGATCGAGTCGAACGTG 59.672 52.381 20.74 15.03 39.99 4.49
3091 3254 4.220163 TGGTATCTAGCTAGATCGAGTCGA 59.780 45.833 34.18 19.06 41.85 4.20
3115 3278 9.679661 TCAGAGATAGTCATATTCTACAGATCC 57.320 37.037 0.00 0.00 0.00 3.36
3124 3287 9.709495 ATTTCTGCTTCAGAGATAGTCATATTC 57.291 33.333 0.00 0.00 41.75 1.75
3140 3303 4.450419 ACATGCTATCGCTATTTCTGCTTC 59.550 41.667 0.00 0.00 36.97 3.86
3142 3305 4.000331 ACATGCTATCGCTATTTCTGCT 58.000 40.909 0.00 0.00 36.97 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.