Multiple sequence alignment - TraesCS1A01G132300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G132300 chr1A 100.000 2486 0 0 1 2486 179532597 179535082 0.000000e+00 4591
1 TraesCS1A01G132300 chr1A 82.476 719 80 27 1707 2383 208683572 208682858 2.750000e-164 588
2 TraesCS1A01G132300 chr6B 96.139 1010 32 5 515 1521 719431809 719430804 0.000000e+00 1642
3 TraesCS1A01G132300 chr6B 96.646 656 19 2 1730 2383 719430777 719430123 0.000000e+00 1086
4 TraesCS1A01G132300 chr4B 95.743 1010 37 5 515 1521 299747587 299746581 0.000000e+00 1622
5 TraesCS1A01G132300 chr4B 97.080 685 17 2 1701 2383 299746569 299745886 0.000000e+00 1151
6 TraesCS1A01G132300 chr4B 89.021 419 42 2 1 419 94511833 94512247 1.320000e-142 516
7 TraesCS1A01G132300 chr4B 97.253 182 4 1 1525 1706 145840706 145840526 8.640000e-80 307
8 TraesCS1A01G132300 chr4B 96.757 185 4 2 1528 1710 622332572 622332388 8.640000e-80 307
9 TraesCS1A01G132300 chr4D 89.318 1011 99 7 512 1518 205900351 205901356 0.000000e+00 1260
10 TraesCS1A01G132300 chr4D 86.283 452 47 10 1940 2388 205901678 205902117 6.220000e-131 477
11 TraesCS1A01G132300 chr4D 90.566 212 15 3 1701 1910 205901371 205901579 2.440000e-70 276
12 TraesCS1A01G132300 chr4D 90.090 111 8 1 2379 2486 205903433 205903543 9.270000e-30 141
13 TraesCS1A01G132300 chr4D 93.151 73 4 1 1883 1954 205901585 205901657 3.380000e-19 106
14 TraesCS1A01G132300 chr5D 86.162 990 132 4 534 1519 191264213 191263225 0.000000e+00 1064
15 TraesCS1A01G132300 chr5D 85.945 989 134 4 534 1518 196349859 196350846 0.000000e+00 1051
16 TraesCS1A01G132300 chr5D 84.270 712 74 21 1707 2383 191263205 191262497 0.000000e+00 660
17 TraesCS1A01G132300 chr5D 83.708 712 78 24 1707 2383 196350867 196351575 2.700000e-179 638
18 TraesCS1A01G132300 chr2A 86.061 990 133 4 534 1519 475805952 475804964 0.000000e+00 1059
19 TraesCS1A01G132300 chr2A 82.725 712 85 25 1707 2383 475796838 475796130 1.270000e-167 599
20 TraesCS1A01G132300 chr6A 81.341 1029 146 32 529 1518 390583985 390582964 0.000000e+00 795
21 TraesCS1A01G132300 chr3B 89.957 468 43 3 1 468 439339717 439340180 3.540000e-168 601
22 TraesCS1A01G132300 chr5B 82.312 718 83 23 1707 2383 323889893 323890607 1.280000e-162 582
23 TraesCS1A01G132300 chr5B 82.058 719 83 23 1707 2383 37706104 37705390 2.770000e-159 571
24 TraesCS1A01G132300 chrUn 82.058 719 83 23 1707 2383 65724769 65724055 2.770000e-159 571
25 TraesCS1A01G132300 chrUn 99.438 178 1 0 1525 1702 41827417 41827240 8.580000e-85 324
26 TraesCS1A01G132300 chr6D 81.818 704 92 24 1707 2383 273040349 273039655 2.160000e-155 558
27 TraesCS1A01G132300 chr2B 81.616 718 88 26 1707 2383 424321421 424320707 2.790000e-154 555
28 TraesCS1A01G132300 chr2B 98.315 178 3 0 1525 1702 749305087 749305264 1.860000e-81 313
29 TraesCS1A01G132300 chr5A 86.486 481 43 6 4 480 328955030 328954568 2.210000e-140 508
30 TraesCS1A01G132300 chr5A 98.315 178 3 0 1525 1702 660243064 660243241 1.860000e-81 313
31 TraesCS1A01G132300 chr7A 95.139 288 13 1 518 804 25356081 25355794 1.050000e-123 453
32 TraesCS1A01G132300 chr1B 98.876 178 2 0 1525 1702 573047964 573047787 3.990000e-83 318
33 TraesCS1A01G132300 chr3D 98.870 177 2 0 1525 1701 459155019 459154843 1.440000e-82 316
34 TraesCS1A01G132300 chr3A 98.315 178 3 0 1525 1702 157034777 157034600 1.860000e-81 313
35 TraesCS1A01G132300 chr4A 97.753 178 4 0 1525 1702 649884550 649884727 8.640000e-80 307
36 TraesCS1A01G132300 chr4A 91.892 111 5 2 2379 2486 658236847 658236956 4.280000e-33 152
37 TraesCS1A01G132300 chr4A 89.189 111 7 3 2379 2486 467262138 467262030 1.550000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G132300 chr1A 179532597 179535082 2485 False 4591.0 4591 100.0000 1 2486 1 chr1A.!!$F1 2485
1 TraesCS1A01G132300 chr1A 208682858 208683572 714 True 588.0 588 82.4760 1707 2383 1 chr1A.!!$R1 676
2 TraesCS1A01G132300 chr6B 719430123 719431809 1686 True 1364.0 1642 96.3925 515 2383 2 chr6B.!!$R1 1868
3 TraesCS1A01G132300 chr4B 299745886 299747587 1701 True 1386.5 1622 96.4115 515 2383 2 chr4B.!!$R3 1868
4 TraesCS1A01G132300 chr4D 205900351 205903543 3192 False 452.0 1260 89.8816 512 2486 5 chr4D.!!$F1 1974
5 TraesCS1A01G132300 chr5D 191262497 191264213 1716 True 862.0 1064 85.2160 534 2383 2 chr5D.!!$R1 1849
6 TraesCS1A01G132300 chr5D 196349859 196351575 1716 False 844.5 1051 84.8265 534 2383 2 chr5D.!!$F1 1849
7 TraesCS1A01G132300 chr2A 475804964 475805952 988 True 1059.0 1059 86.0610 534 1519 1 chr2A.!!$R2 985
8 TraesCS1A01G132300 chr2A 475796130 475796838 708 True 599.0 599 82.7250 1707 2383 1 chr2A.!!$R1 676
9 TraesCS1A01G132300 chr6A 390582964 390583985 1021 True 795.0 795 81.3410 529 1518 1 chr6A.!!$R1 989
10 TraesCS1A01G132300 chr5B 323889893 323890607 714 False 582.0 582 82.3120 1707 2383 1 chr5B.!!$F1 676
11 TraesCS1A01G132300 chr5B 37705390 37706104 714 True 571.0 571 82.0580 1707 2383 1 chr5B.!!$R1 676
12 TraesCS1A01G132300 chrUn 65724055 65724769 714 True 571.0 571 82.0580 1707 2383 1 chrUn.!!$R2 676
13 TraesCS1A01G132300 chr6D 273039655 273040349 694 True 558.0 558 81.8180 1707 2383 1 chr6D.!!$R1 676
14 TraesCS1A01G132300 chr2B 424320707 424321421 714 True 555.0 555 81.6160 1707 2383 1 chr2B.!!$R1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.03601 ATGCAGGTCTGGAAGGAACG 60.036 55.0 0.0 0.0 33.77 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1639 0.043053 CGGCATGACAATTACTCGCG 60.043 55.0 0.0 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.805267 GCGATGCAGGTCTGGAAG 58.195 61.111 0.00 0.00 33.77 3.46
18 19 1.817099 GCGATGCAGGTCTGGAAGG 60.817 63.158 0.00 0.00 33.77 3.46
19 20 1.900351 CGATGCAGGTCTGGAAGGA 59.100 57.895 0.00 0.00 33.77 3.36
20 21 0.250234 CGATGCAGGTCTGGAAGGAA 59.750 55.000 0.00 0.00 33.77 3.36
21 22 1.743996 GATGCAGGTCTGGAAGGAAC 58.256 55.000 0.00 0.00 33.77 3.62
22 23 0.036010 ATGCAGGTCTGGAAGGAACG 60.036 55.000 0.00 0.00 33.77 3.95
23 24 1.376037 GCAGGTCTGGAAGGAACGG 60.376 63.158 0.00 0.00 0.00 4.44
24 25 1.296715 CAGGTCTGGAAGGAACGGG 59.703 63.158 0.00 0.00 0.00 5.28
25 26 2.046217 GGTCTGGAAGGAACGGGC 60.046 66.667 0.00 0.00 0.00 6.13
26 27 2.434359 GTCTGGAAGGAACGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
27 28 2.920912 TCTGGAAGGAACGGGCGT 60.921 61.111 0.00 0.00 0.00 5.68
28 29 2.434359 CTGGAAGGAACGGGCGTC 60.434 66.667 0.00 0.00 0.00 5.19
29 30 3.952628 CTGGAAGGAACGGGCGTCC 62.953 68.421 0.00 0.00 0.00 4.79
30 31 4.011517 GGAAGGAACGGGCGTCCA 62.012 66.667 6.96 0.00 0.00 4.02
31 32 2.741211 GAAGGAACGGGCGTCCAC 60.741 66.667 6.96 0.00 0.00 4.02
32 33 4.675029 AAGGAACGGGCGTCCACG 62.675 66.667 6.96 6.09 43.27 4.94
64 65 3.121030 GCACTGAACCGCGCAGAT 61.121 61.111 17.39 0.00 36.86 2.90
65 66 2.780643 CACTGAACCGCGCAGATG 59.219 61.111 17.39 9.02 36.86 2.90
66 67 1.737735 CACTGAACCGCGCAGATGA 60.738 57.895 17.39 0.00 36.86 2.92
67 68 1.738099 ACTGAACCGCGCAGATGAC 60.738 57.895 17.39 0.00 36.86 3.06
68 69 2.792290 CTGAACCGCGCAGATGACG 61.792 63.158 8.75 0.00 35.39 4.35
69 70 2.506217 GAACCGCGCAGATGACGA 60.506 61.111 8.75 0.00 0.00 4.20
70 71 1.878522 GAACCGCGCAGATGACGAT 60.879 57.895 8.75 0.00 0.00 3.73
71 72 2.082437 GAACCGCGCAGATGACGATG 62.082 60.000 8.75 0.00 0.00 3.84
72 73 3.993234 CCGCGCAGATGACGATGC 61.993 66.667 8.75 0.00 39.09 3.91
73 74 3.993234 CGCGCAGATGACGATGCC 61.993 66.667 8.75 0.00 39.30 4.40
74 75 2.587194 GCGCAGATGACGATGCCT 60.587 61.111 0.30 0.00 39.30 4.75
75 76 2.176273 GCGCAGATGACGATGCCTT 61.176 57.895 0.30 0.00 39.30 4.35
76 77 1.640069 CGCAGATGACGATGCCTTG 59.360 57.895 0.00 0.00 39.30 3.61
77 78 0.807275 CGCAGATGACGATGCCTTGA 60.807 55.000 0.00 0.00 39.30 3.02
78 79 0.935898 GCAGATGACGATGCCTTGAG 59.064 55.000 0.00 0.00 36.41 3.02
79 80 1.579698 CAGATGACGATGCCTTGAGG 58.420 55.000 0.00 0.00 38.53 3.86
89 90 2.124570 CCTTGAGGCATGACCGGG 60.125 66.667 6.32 0.00 46.52 5.73
90 91 2.124570 CTTGAGGCATGACCGGGG 60.125 66.667 6.32 0.00 46.52 5.73
91 92 2.609299 TTGAGGCATGACCGGGGA 60.609 61.111 6.32 0.00 46.52 4.81
92 93 2.599645 CTTGAGGCATGACCGGGGAG 62.600 65.000 6.32 0.00 46.52 4.30
93 94 4.554036 GAGGCATGACCGGGGAGC 62.554 72.222 6.32 3.89 46.52 4.70
112 113 3.691342 CCACGGACGAGCCCAAGA 61.691 66.667 0.00 0.00 0.00 3.02
113 114 2.125912 CACGGACGAGCCCAAGAG 60.126 66.667 0.00 0.00 0.00 2.85
114 115 3.382832 ACGGACGAGCCCAAGAGG 61.383 66.667 0.00 0.00 39.47 3.69
115 116 3.068691 CGGACGAGCCCAAGAGGA 61.069 66.667 0.00 0.00 38.24 3.71
116 117 2.896443 GGACGAGCCCAAGAGGAG 59.104 66.667 0.00 0.00 38.24 3.69
117 118 2.185608 GACGAGCCCAAGAGGAGC 59.814 66.667 0.00 0.00 38.24 4.70
118 119 2.284258 ACGAGCCCAAGAGGAGCT 60.284 61.111 0.00 0.00 42.01 4.09
119 120 2.186384 CGAGCCCAAGAGGAGCTG 59.814 66.667 0.00 0.00 40.22 4.24
120 121 2.588989 GAGCCCAAGAGGAGCTGG 59.411 66.667 0.00 0.00 40.22 4.85
121 122 1.992277 GAGCCCAAGAGGAGCTGGA 60.992 63.158 0.00 0.00 40.22 3.86
122 123 1.307691 AGCCCAAGAGGAGCTGGAT 60.308 57.895 0.00 0.00 39.16 3.41
123 124 1.153005 GCCCAAGAGGAGCTGGATG 60.153 63.158 0.00 0.00 38.24 3.51
124 125 1.153005 CCCAAGAGGAGCTGGATGC 60.153 63.158 0.00 0.00 38.24 3.91
125 126 1.605992 CCAAGAGGAGCTGGATGCA 59.394 57.895 0.00 0.00 45.94 3.96
126 127 0.464013 CCAAGAGGAGCTGGATGCAG 60.464 60.000 10.32 10.32 45.94 4.41
133 134 4.315588 GCTGGATGCAGCAGAACT 57.684 55.556 31.60 0.00 46.73 3.01
134 135 2.564471 GCTGGATGCAGCAGAACTT 58.436 52.632 31.60 0.00 46.73 2.66
135 136 0.450983 GCTGGATGCAGCAGAACTTC 59.549 55.000 31.60 1.34 46.73 3.01
136 137 1.817357 CTGGATGCAGCAGAACTTCA 58.183 50.000 3.51 0.00 0.00 3.02
137 138 1.738350 CTGGATGCAGCAGAACTTCAG 59.262 52.381 3.51 0.00 0.00 3.02
138 139 0.450983 GGATGCAGCAGAACTTCAGC 59.549 55.000 3.51 0.00 0.00 4.26
139 140 0.096628 GATGCAGCAGAACTTCAGCG 59.903 55.000 0.00 0.00 33.83 5.18
140 141 1.303799 ATGCAGCAGAACTTCAGCGG 61.304 55.000 0.00 2.55 33.83 5.52
141 142 2.866028 CAGCAGAACTTCAGCGGC 59.134 61.111 0.00 0.00 33.83 6.53
142 143 1.962822 CAGCAGAACTTCAGCGGCA 60.963 57.895 1.45 0.00 33.83 5.69
143 144 1.670406 AGCAGAACTTCAGCGGCAG 60.670 57.895 1.45 0.00 33.83 4.85
144 145 2.866028 CAGAACTTCAGCGGCAGC 59.134 61.111 0.00 0.00 45.58 5.25
154 155 4.410743 GCGGCAGCAAAGCAGACC 62.411 66.667 3.18 0.00 44.35 3.85
155 156 2.670934 CGGCAGCAAAGCAGACCT 60.671 61.111 0.00 0.00 35.83 3.85
156 157 2.263741 CGGCAGCAAAGCAGACCTT 61.264 57.895 0.00 0.00 35.83 3.50
157 158 1.583477 GGCAGCAAAGCAGACCTTC 59.417 57.895 0.00 0.00 35.83 3.46
158 159 1.583477 GCAGCAAAGCAGACCTTCC 59.417 57.895 0.00 0.00 31.99 3.46
159 160 1.871772 CAGCAAAGCAGACCTTCCG 59.128 57.895 0.00 0.00 31.99 4.30
160 161 1.302832 AGCAAAGCAGACCTTCCGG 60.303 57.895 0.00 0.00 31.99 5.14
161 162 2.335712 GCAAAGCAGACCTTCCGGG 61.336 63.158 0.00 0.00 41.89 5.73
174 175 1.602237 TCCGGGTTGGATCTGAAGC 59.398 57.895 0.00 0.00 43.74 3.86
175 176 1.198094 TCCGGGTTGGATCTGAAGCA 61.198 55.000 0.00 0.00 43.74 3.91
176 177 0.322456 CCGGGTTGGATCTGAAGCAA 60.322 55.000 0.00 0.00 42.00 3.91
177 178 0.804989 CGGGTTGGATCTGAAGCAAC 59.195 55.000 3.88 3.88 0.00 4.17
178 179 0.804989 GGGTTGGATCTGAAGCAACG 59.195 55.000 8.72 0.00 0.00 4.10
179 180 1.610624 GGGTTGGATCTGAAGCAACGA 60.611 52.381 0.00 0.00 0.00 3.85
180 181 1.734465 GGTTGGATCTGAAGCAACGAG 59.266 52.381 0.00 0.00 0.00 4.18
181 182 2.612972 GGTTGGATCTGAAGCAACGAGA 60.613 50.000 0.00 0.00 0.00 4.04
182 183 2.662006 TGGATCTGAAGCAACGAGAG 57.338 50.000 0.00 0.00 0.00 3.20
183 184 1.285578 GGATCTGAAGCAACGAGAGC 58.714 55.000 0.00 0.00 0.00 4.09
184 185 1.404717 GGATCTGAAGCAACGAGAGCA 60.405 52.381 0.00 0.00 0.00 4.26
185 186 1.925847 GATCTGAAGCAACGAGAGCAG 59.074 52.381 0.00 0.00 0.00 4.24
186 187 0.668706 TCTGAAGCAACGAGAGCAGC 60.669 55.000 0.00 0.00 34.81 5.25
187 188 0.947660 CTGAAGCAACGAGAGCAGCA 60.948 55.000 0.00 0.00 36.75 4.41
188 189 0.532640 TGAAGCAACGAGAGCAGCAA 60.533 50.000 0.00 0.00 36.75 3.91
189 190 0.110464 GAAGCAACGAGAGCAGCAAC 60.110 55.000 0.00 0.00 36.75 4.17
190 191 0.533755 AAGCAACGAGAGCAGCAACT 60.534 50.000 0.00 0.00 36.75 3.16
191 192 1.206072 GCAACGAGAGCAGCAACTG 59.794 57.895 0.00 0.00 34.74 3.16
200 201 4.410225 CAGCAACTGCAGGTGGAT 57.590 55.556 31.99 9.98 45.16 3.41
201 202 2.177950 CAGCAACTGCAGGTGGATC 58.822 57.895 31.99 16.28 45.16 3.36
202 203 0.322277 CAGCAACTGCAGGTGGATCT 60.322 55.000 31.99 18.33 45.16 2.75
203 204 0.403271 AGCAACTGCAGGTGGATCTT 59.597 50.000 31.99 5.74 45.16 2.40
204 205 0.807496 GCAACTGCAGGTGGATCTTC 59.193 55.000 31.99 11.38 41.59 2.87
205 206 1.081892 CAACTGCAGGTGGATCTTCG 58.918 55.000 24.65 0.00 0.00 3.79
206 207 0.036010 AACTGCAGGTGGATCTTCGG 60.036 55.000 19.93 0.00 0.00 4.30
207 208 1.153289 CTGCAGGTGGATCTTCGGG 60.153 63.158 5.57 0.00 0.00 5.14
208 209 2.190578 GCAGGTGGATCTTCGGGG 59.809 66.667 0.00 0.00 0.00 5.73
209 210 2.367202 GCAGGTGGATCTTCGGGGA 61.367 63.158 0.00 0.00 0.00 4.81
210 211 1.700042 GCAGGTGGATCTTCGGGGAT 61.700 60.000 0.00 0.00 0.00 3.85
211 212 1.717032 CAGGTGGATCTTCGGGGATA 58.283 55.000 0.00 0.00 0.00 2.59
212 213 1.620819 CAGGTGGATCTTCGGGGATAG 59.379 57.143 0.00 0.00 0.00 2.08
213 214 1.503784 AGGTGGATCTTCGGGGATAGA 59.496 52.381 0.00 0.00 0.00 1.98
214 215 2.090719 AGGTGGATCTTCGGGGATAGAA 60.091 50.000 0.00 0.00 0.00 2.10
215 216 2.907042 GGTGGATCTTCGGGGATAGAAT 59.093 50.000 0.00 0.00 0.00 2.40
216 217 3.055747 GGTGGATCTTCGGGGATAGAATC 60.056 52.174 0.00 0.00 0.00 2.52
224 225 3.787394 GGATAGAATCCCGGCCGA 58.213 61.111 30.73 8.21 43.88 5.54
225 226 2.055299 GGATAGAATCCCGGCCGAA 58.945 57.895 30.73 15.53 43.88 4.30
226 227 0.395312 GGATAGAATCCCGGCCGAAA 59.605 55.000 30.73 15.09 43.88 3.46
227 228 1.608283 GGATAGAATCCCGGCCGAAAG 60.608 57.143 30.73 15.49 43.88 2.62
228 229 1.343465 GATAGAATCCCGGCCGAAAGA 59.657 52.381 30.73 20.72 0.00 2.52
229 230 1.196911 TAGAATCCCGGCCGAAAGAA 58.803 50.000 30.73 7.07 0.00 2.52
230 231 0.107654 AGAATCCCGGCCGAAAGAAG 60.108 55.000 30.73 8.54 0.00 2.85
231 232 0.107848 GAATCCCGGCCGAAAGAAGA 60.108 55.000 30.73 13.34 0.00 2.87
232 233 0.107654 AATCCCGGCCGAAAGAAGAG 60.108 55.000 30.73 6.78 0.00 2.85
233 234 2.595009 ATCCCGGCCGAAAGAAGAGC 62.595 60.000 30.73 0.00 0.00 4.09
234 235 2.820037 CCGGCCGAAAGAAGAGCC 60.820 66.667 30.73 0.00 42.18 4.70
235 236 2.266055 CGGCCGAAAGAAGAGCCT 59.734 61.111 24.07 0.00 43.48 4.58
236 237 2.103042 CGGCCGAAAGAAGAGCCTG 61.103 63.158 24.07 0.00 43.48 4.85
237 238 1.296715 GGCCGAAAGAAGAGCCTGA 59.703 57.895 0.00 0.00 42.34 3.86
238 239 0.321653 GGCCGAAAGAAGAGCCTGAA 60.322 55.000 0.00 0.00 42.34 3.02
239 240 1.082690 GCCGAAAGAAGAGCCTGAAG 58.917 55.000 0.00 0.00 0.00 3.02
240 241 1.338200 GCCGAAAGAAGAGCCTGAAGA 60.338 52.381 0.00 0.00 0.00 2.87
241 242 2.615869 CCGAAAGAAGAGCCTGAAGAG 58.384 52.381 0.00 0.00 0.00 2.85
242 243 2.615869 CGAAAGAAGAGCCTGAAGAGG 58.384 52.381 0.00 0.00 43.19 3.69
243 244 2.676463 CGAAAGAAGAGCCTGAAGAGGG 60.676 54.545 0.00 0.00 40.19 4.30
244 245 2.334006 AAGAAGAGCCTGAAGAGGGA 57.666 50.000 0.00 0.00 40.19 4.20
245 246 1.864669 AGAAGAGCCTGAAGAGGGAG 58.135 55.000 0.00 0.00 40.19 4.30
246 247 0.829990 GAAGAGCCTGAAGAGGGAGG 59.170 60.000 0.00 0.00 40.19 4.30
247 248 0.620121 AAGAGCCTGAAGAGGGAGGG 60.620 60.000 0.00 0.00 40.19 4.30
248 249 1.306568 GAGCCTGAAGAGGGAGGGT 60.307 63.158 0.00 0.00 42.87 4.34
249 250 1.614824 AGCCTGAAGAGGGAGGGTG 60.615 63.158 0.00 0.00 38.67 4.61
250 251 2.993853 CCTGAAGAGGGAGGGTGC 59.006 66.667 0.00 0.00 35.40 5.01
251 252 2.674220 CCTGAAGAGGGAGGGTGCC 61.674 68.421 0.00 0.00 35.40 5.01
252 253 1.614824 CTGAAGAGGGAGGGTGCCT 60.615 63.158 0.00 0.00 42.67 4.75
253 254 1.151810 TGAAGAGGGAGGGTGCCTT 60.152 57.895 0.00 0.00 38.79 4.35
254 255 1.301293 GAAGAGGGAGGGTGCCTTG 59.699 63.158 0.00 0.00 38.79 3.61
255 256 2.203549 GAAGAGGGAGGGTGCCTTGG 62.204 65.000 0.00 0.00 38.79 3.61
256 257 4.432741 GAGGGAGGGTGCCTTGGC 62.433 72.222 4.43 4.43 38.79 4.52
273 274 4.598894 CGGCGAGGCTGGATCTGG 62.599 72.222 0.00 0.00 0.00 3.86
274 275 4.925861 GGCGAGGCTGGATCTGGC 62.926 72.222 0.00 0.00 35.64 4.85
276 277 3.842923 CGAGGCTGGATCTGGCGT 61.843 66.667 0.00 5.62 33.49 5.68
277 278 2.202987 GAGGCTGGATCTGGCGTG 60.203 66.667 0.00 0.00 33.49 5.34
278 279 3.746949 GAGGCTGGATCTGGCGTGG 62.747 68.421 0.00 0.00 33.49 4.94
279 280 3.785859 GGCTGGATCTGGCGTGGA 61.786 66.667 0.00 0.00 0.00 4.02
280 281 2.507944 GCTGGATCTGGCGTGGAT 59.492 61.111 0.00 0.00 0.00 3.41
281 282 1.596477 GCTGGATCTGGCGTGGATC 60.596 63.158 0.00 6.43 38.92 3.36
284 285 2.029666 GATCTGGCGTGGATCCCG 59.970 66.667 9.90 13.48 35.01 5.14
292 293 4.148825 GTGGATCCCGCGAGCTGT 62.149 66.667 8.23 0.00 0.00 4.40
293 294 4.147449 TGGATCCCGCGAGCTGTG 62.147 66.667 8.23 0.00 0.00 3.66
299 300 4.680237 CCGCGAGCTGTGGGAACA 62.680 66.667 8.23 0.00 44.97 3.18
300 301 3.114616 CGCGAGCTGTGGGAACAG 61.115 66.667 0.00 1.45 44.46 3.16
301 302 2.343758 GCGAGCTGTGGGAACAGA 59.656 61.111 9.97 0.00 44.46 3.41
308 309 3.147826 TGTGGGAACAGAGAGAGCA 57.852 52.632 0.00 0.00 44.46 4.26
309 310 0.681733 TGTGGGAACAGAGAGAGCAC 59.318 55.000 0.00 0.00 44.46 4.40
310 311 0.389166 GTGGGAACAGAGAGAGCACG 60.389 60.000 0.00 0.00 44.46 5.34
311 312 0.539669 TGGGAACAGAGAGAGCACGA 60.540 55.000 0.00 0.00 35.01 4.35
312 313 0.172352 GGGAACAGAGAGAGCACGAG 59.828 60.000 0.00 0.00 0.00 4.18
313 314 0.172352 GGAACAGAGAGAGCACGAGG 59.828 60.000 0.00 0.00 0.00 4.63
314 315 0.457681 GAACAGAGAGAGCACGAGGC 60.458 60.000 0.00 0.00 45.30 4.70
315 316 1.882989 AACAGAGAGAGCACGAGGCC 61.883 60.000 0.00 0.00 46.50 5.19
316 317 3.137459 AGAGAGAGCACGAGGCCG 61.137 66.667 0.00 0.00 46.50 6.13
327 328 4.388499 GAGGCCGTCCCGAGCAAA 62.388 66.667 0.00 0.00 39.21 3.68
328 329 4.699522 AGGCCGTCCCGAGCAAAC 62.700 66.667 0.00 0.00 39.21 2.93
330 331 4.699522 GCCGTCCCGAGCAAACCT 62.700 66.667 0.00 0.00 0.00 3.50
331 332 2.032071 CCGTCCCGAGCAAACCTT 59.968 61.111 0.00 0.00 0.00 3.50
332 333 2.325082 CCGTCCCGAGCAAACCTTG 61.325 63.158 0.00 0.00 0.00 3.61
333 334 2.325082 CGTCCCGAGCAAACCTTGG 61.325 63.158 0.00 0.00 43.81 3.61
334 335 2.282180 TCCCGAGCAAACCTTGGC 60.282 61.111 0.00 0.00 42.97 4.52
335 336 3.737172 CCCGAGCAAACCTTGGCG 61.737 66.667 0.00 0.00 42.97 5.69
336 337 2.978010 CCGAGCAAACCTTGGCGT 60.978 61.111 0.00 0.00 38.28 5.68
337 338 2.252260 CGAGCAAACCTTGGCGTG 59.748 61.111 0.00 0.00 34.54 5.34
338 339 2.644992 GAGCAAACCTTGGCGTGG 59.355 61.111 0.00 0.00 34.54 4.94
339 340 2.912025 AGCAAACCTTGGCGTGGG 60.912 61.111 0.83 0.00 34.54 4.61
340 341 3.989787 GCAAACCTTGGCGTGGGG 61.990 66.667 0.83 0.00 0.00 4.96
341 342 2.203422 CAAACCTTGGCGTGGGGA 60.203 61.111 0.83 0.00 0.00 4.81
342 343 1.830408 CAAACCTTGGCGTGGGGAA 60.830 57.895 0.83 0.00 0.00 3.97
343 344 1.830847 AAACCTTGGCGTGGGGAAC 60.831 57.895 0.83 0.00 0.00 3.62
365 366 4.084888 GAGGAAACCGCGGCGTTG 62.085 66.667 28.58 9.41 0.00 4.10
376 377 4.785453 GGCGTTGCAGGGGAGAGG 62.785 72.222 0.00 0.00 0.00 3.69
377 378 4.021925 GCGTTGCAGGGGAGAGGT 62.022 66.667 0.00 0.00 0.00 3.85
378 379 2.046892 CGTTGCAGGGGAGAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
379 380 2.360475 GTTGCAGGGGAGAGGTGC 60.360 66.667 0.00 0.00 37.73 5.01
380 381 4.020617 TTGCAGGGGAGAGGTGCG 62.021 66.667 0.00 0.00 40.23 5.34
387 388 4.767255 GGAGAGGTGCGGCTGGTG 62.767 72.222 0.00 0.00 0.00 4.17
388 389 3.695606 GAGAGGTGCGGCTGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
389 390 3.240134 GAGAGGTGCGGCTGGTGAA 62.240 63.158 0.00 0.00 0.00 3.18
390 391 2.743928 GAGGTGCGGCTGGTGAAG 60.744 66.667 0.00 0.00 0.00 3.02
391 392 4.335647 AGGTGCGGCTGGTGAAGG 62.336 66.667 0.00 0.00 0.00 3.46
392 393 4.329545 GGTGCGGCTGGTGAAGGA 62.330 66.667 0.00 0.00 0.00 3.36
393 394 2.743928 GTGCGGCTGGTGAAGGAG 60.744 66.667 0.00 0.00 0.00 3.69
394 395 3.241530 TGCGGCTGGTGAAGGAGT 61.242 61.111 0.00 0.00 0.00 3.85
395 396 2.743928 GCGGCTGGTGAAGGAGTG 60.744 66.667 0.00 0.00 0.00 3.51
396 397 2.046892 CGGCTGGTGAAGGAGTGG 60.047 66.667 0.00 0.00 0.00 4.00
397 398 2.360475 GGCTGGTGAAGGAGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
398 399 2.743928 GCTGGTGAAGGAGTGGCG 60.744 66.667 0.00 0.00 0.00 5.69
399 400 2.743928 CTGGTGAAGGAGTGGCGC 60.744 66.667 0.00 0.00 0.00 6.53
400 401 4.329545 TGGTGAAGGAGTGGCGCC 62.330 66.667 22.73 22.73 0.00 6.53
476 477 2.998949 GGGGGAGCGACATCCTTT 59.001 61.111 0.00 0.00 39.50 3.11
477 478 1.303282 GGGGGAGCGACATCCTTTT 59.697 57.895 0.00 0.00 39.50 2.27
478 479 0.323451 GGGGGAGCGACATCCTTTTT 60.323 55.000 0.00 0.00 39.50 1.94
503 504 7.685532 TCGCGAAAGATTATATGATAGATGC 57.314 36.000 6.20 0.00 0.00 3.91
504 505 7.257722 TCGCGAAAGATTATATGATAGATGCA 58.742 34.615 6.20 0.00 0.00 3.96
505 506 7.759433 TCGCGAAAGATTATATGATAGATGCAA 59.241 33.333 6.20 0.00 0.00 4.08
506 507 8.382875 CGCGAAAGATTATATGATAGATGCAAA 58.617 33.333 0.00 0.00 0.00 3.68
582 583 0.663153 GGAATAATGGTCGCACTGGC 59.337 55.000 0.00 0.00 0.00 4.85
613 614 6.430616 TGTGTCAATGATGAAAGAGTATGCAA 59.569 34.615 0.00 0.00 37.30 4.08
627 628 5.103940 AGAGTATGCAAATGTGGGAAGGTAT 60.104 40.000 0.00 0.00 0.00 2.73
797 801 3.881220 AGAAAAGAGTGGTTTCGGTTGA 58.119 40.909 0.00 0.00 39.48 3.18
1109 1117 7.633789 AGTTATACTGATGATGTTTTGAGGGT 58.366 34.615 0.00 0.00 0.00 4.34
1187 1197 6.464892 CCAGAATATGAGTTGGGCAGAGATAA 60.465 42.308 0.00 0.00 0.00 1.75
1188 1198 6.994496 CAGAATATGAGTTGGGCAGAGATAAA 59.006 38.462 0.00 0.00 0.00 1.40
1392 1434 0.827368 TGTTGGCCAACTTGGTTTCC 59.173 50.000 40.40 18.25 40.46 3.13
1521 1566 3.547247 TGGCATGCCAAACTGCAA 58.453 50.000 36.95 11.35 45.84 4.08
1522 1567 1.368209 TGGCATGCCAAACTGCAAG 59.632 52.632 36.95 0.00 45.84 4.01
1524 1569 2.030958 GCATGCCAAACTGCAAGCC 61.031 57.895 6.36 0.00 46.99 4.35
1525 1570 1.368209 CATGCCAAACTGCAAGCCA 59.632 52.632 0.00 0.00 45.84 4.75
1527 1572 0.034337 ATGCCAAACTGCAAGCCAAG 59.966 50.000 0.00 0.00 45.84 3.61
1528 1573 1.957695 GCCAAACTGCAAGCCAAGC 60.958 57.895 0.00 0.00 37.60 4.01
1529 1574 1.744014 CCAAACTGCAAGCCAAGCT 59.256 52.632 0.00 0.00 42.56 3.74
1544 1589 5.495640 AGCCAAGCTTATTATAGATGAGGC 58.504 41.667 0.00 3.02 33.89 4.70
1545 1590 4.637977 GCCAAGCTTATTATAGATGAGGCC 59.362 45.833 0.00 0.00 32.52 5.19
1546 1591 5.804446 GCCAAGCTTATTATAGATGAGGCCA 60.804 44.000 5.01 0.00 32.52 5.36
1547 1592 6.240894 CCAAGCTTATTATAGATGAGGCCAA 58.759 40.000 5.01 0.00 0.00 4.52
1548 1593 6.150140 CCAAGCTTATTATAGATGAGGCCAAC 59.850 42.308 5.01 0.00 0.00 3.77
1549 1594 5.810095 AGCTTATTATAGATGAGGCCAACC 58.190 41.667 5.01 0.00 0.00 3.77
1566 1611 1.213296 ACCTATGGGTTACTGCAGGG 58.787 55.000 19.93 8.48 44.73 4.45
1567 1612 0.474184 CCTATGGGTTACTGCAGGGG 59.526 60.000 19.93 0.00 0.00 4.79
1568 1613 0.179018 CTATGGGTTACTGCAGGGGC 60.179 60.000 19.93 6.89 41.68 5.80
1569 1614 0.623324 TATGGGTTACTGCAGGGGCT 60.623 55.000 19.93 0.00 41.91 5.19
1570 1615 0.623324 ATGGGTTACTGCAGGGGCTA 60.623 55.000 19.93 0.00 41.91 3.93
1571 1616 0.842905 TGGGTTACTGCAGGGGCTAA 60.843 55.000 19.93 4.46 41.91 3.09
1572 1617 0.330267 GGGTTACTGCAGGGGCTAAA 59.670 55.000 19.93 0.00 41.91 1.85
1573 1618 1.460504 GGTTACTGCAGGGGCTAAAC 58.539 55.000 19.93 6.38 41.91 2.01
1574 1619 1.271707 GGTTACTGCAGGGGCTAAACA 60.272 52.381 19.93 0.00 41.91 2.83
1575 1620 2.510613 GTTACTGCAGGGGCTAAACAA 58.489 47.619 19.93 0.00 41.91 2.83
1576 1621 3.089284 GTTACTGCAGGGGCTAAACAAT 58.911 45.455 19.93 0.00 41.91 2.71
1577 1622 2.309136 ACTGCAGGGGCTAAACAATT 57.691 45.000 19.93 0.00 41.91 2.32
1578 1623 3.449746 ACTGCAGGGGCTAAACAATTA 57.550 42.857 19.93 0.00 41.91 1.40
1579 1624 3.356290 ACTGCAGGGGCTAAACAATTAG 58.644 45.455 19.93 0.00 41.27 1.73
1580 1625 2.689983 CTGCAGGGGCTAAACAATTAGG 59.310 50.000 5.57 0.00 39.17 2.69
1581 1626 2.031870 GCAGGGGCTAAACAATTAGGG 58.968 52.381 0.00 0.00 39.17 3.53
1582 1627 2.357777 GCAGGGGCTAAACAATTAGGGA 60.358 50.000 0.00 0.00 39.17 4.20
1583 1628 3.880117 GCAGGGGCTAAACAATTAGGGAA 60.880 47.826 0.00 0.00 39.17 3.97
1584 1629 4.349365 CAGGGGCTAAACAATTAGGGAAA 58.651 43.478 0.00 0.00 39.17 3.13
1585 1630 4.775253 CAGGGGCTAAACAATTAGGGAAAA 59.225 41.667 0.00 0.00 39.17 2.29
1586 1631 5.425217 CAGGGGCTAAACAATTAGGGAAAAT 59.575 40.000 0.00 0.00 39.17 1.82
1587 1632 6.029431 AGGGGCTAAACAATTAGGGAAAATT 58.971 36.000 0.00 0.00 39.17 1.82
1596 1641 3.955771 TTAGGGAAAATTGTATCGCGC 57.044 42.857 0.00 0.00 34.07 6.86
1597 1642 0.655733 AGGGAAAATTGTATCGCGCG 59.344 50.000 26.76 26.76 34.07 6.86
1598 1643 0.653636 GGGAAAATTGTATCGCGCGA 59.346 50.000 36.65 36.65 0.00 5.87
1599 1644 1.332904 GGGAAAATTGTATCGCGCGAG 60.333 52.381 36.99 7.02 0.00 5.03
1600 1645 1.326548 GGAAAATTGTATCGCGCGAGT 59.673 47.619 36.99 25.60 0.00 4.18
1601 1646 2.536803 GGAAAATTGTATCGCGCGAGTA 59.463 45.455 36.99 24.59 0.00 2.59
1602 1647 3.000523 GGAAAATTGTATCGCGCGAGTAA 59.999 43.478 36.99 28.63 0.00 2.24
1603 1648 4.318546 GGAAAATTGTATCGCGCGAGTAAT 60.319 41.667 36.99 29.41 0.00 1.89
1604 1649 4.789095 AAATTGTATCGCGCGAGTAATT 57.211 36.364 36.99 32.43 0.00 1.40
1605 1650 3.770765 ATTGTATCGCGCGAGTAATTG 57.229 42.857 36.99 3.07 0.00 2.32
1606 1651 2.197792 TGTATCGCGCGAGTAATTGT 57.802 45.000 36.99 21.17 0.00 2.71
1607 1652 2.114056 TGTATCGCGCGAGTAATTGTC 58.886 47.619 36.99 19.19 0.00 3.18
1608 1653 2.114056 GTATCGCGCGAGTAATTGTCA 58.886 47.619 36.99 11.10 0.00 3.58
1609 1654 1.852942 ATCGCGCGAGTAATTGTCAT 58.147 45.000 36.99 14.25 0.00 3.06
1610 1655 0.920664 TCGCGCGAGTAATTGTCATG 59.079 50.000 31.40 0.00 0.00 3.07
1611 1656 0.651610 CGCGCGAGTAATTGTCATGC 60.652 55.000 28.94 0.00 0.00 4.06
1612 1657 0.316196 GCGCGAGTAATTGTCATGCC 60.316 55.000 12.10 0.00 0.00 4.40
1613 1658 0.043053 CGCGAGTAATTGTCATGCCG 60.043 55.000 0.00 0.00 0.00 5.69
1614 1659 1.006832 GCGAGTAATTGTCATGCCGT 58.993 50.000 0.00 0.00 0.00 5.68
1615 1660 2.198406 GCGAGTAATTGTCATGCCGTA 58.802 47.619 0.00 0.00 0.00 4.02
1616 1661 2.034001 GCGAGTAATTGTCATGCCGTAC 60.034 50.000 0.00 0.00 0.00 3.67
1617 1662 3.444916 CGAGTAATTGTCATGCCGTACT 58.555 45.455 0.00 0.00 0.00 2.73
1618 1663 3.863424 CGAGTAATTGTCATGCCGTACTT 59.137 43.478 0.00 0.00 0.00 2.24
1619 1664 4.026804 CGAGTAATTGTCATGCCGTACTTC 60.027 45.833 0.00 0.00 0.00 3.01
1620 1665 3.863424 AGTAATTGTCATGCCGTACTTCG 59.137 43.478 0.00 0.00 39.52 3.79
1629 1674 4.667420 CGTACTTCGGCCTTGTGT 57.333 55.556 0.00 0.00 35.71 3.72
1630 1675 3.798646 CGTACTTCGGCCTTGTGTA 57.201 52.632 0.00 0.00 35.71 2.90
1631 1676 2.068837 CGTACTTCGGCCTTGTGTAA 57.931 50.000 0.00 0.00 35.71 2.41
1632 1677 1.723003 CGTACTTCGGCCTTGTGTAAC 59.277 52.381 0.00 0.00 35.71 2.50
1633 1678 2.608752 CGTACTTCGGCCTTGTGTAACT 60.609 50.000 0.00 0.00 34.83 2.24
1634 1679 2.165319 ACTTCGGCCTTGTGTAACTC 57.835 50.000 0.00 0.00 38.04 3.01
1635 1680 1.692519 ACTTCGGCCTTGTGTAACTCT 59.307 47.619 0.00 0.00 38.04 3.24
1636 1681 2.895404 ACTTCGGCCTTGTGTAACTCTA 59.105 45.455 0.00 0.00 38.04 2.43
1637 1682 3.251571 CTTCGGCCTTGTGTAACTCTAC 58.748 50.000 0.00 0.00 38.04 2.59
1638 1683 2.241160 TCGGCCTTGTGTAACTCTACA 58.759 47.619 0.00 0.00 38.04 2.74
1639 1684 2.629137 TCGGCCTTGTGTAACTCTACAA 59.371 45.455 0.00 0.00 39.75 2.41
1640 1685 3.069872 TCGGCCTTGTGTAACTCTACAAA 59.930 43.478 0.00 0.00 39.75 2.83
1641 1686 3.810941 CGGCCTTGTGTAACTCTACAAAA 59.189 43.478 0.00 0.00 39.75 2.44
1642 1687 4.319261 CGGCCTTGTGTAACTCTACAAAAC 60.319 45.833 0.00 0.00 39.75 2.43
1643 1688 4.820173 GGCCTTGTGTAACTCTACAAAACT 59.180 41.667 0.00 0.00 39.75 2.66
1644 1689 5.049612 GGCCTTGTGTAACTCTACAAAACTC 60.050 44.000 0.00 0.00 39.75 3.01
1645 1690 5.758784 GCCTTGTGTAACTCTACAAAACTCT 59.241 40.000 0.00 0.00 39.75 3.24
1646 1691 6.927381 GCCTTGTGTAACTCTACAAAACTCTA 59.073 38.462 0.00 0.00 39.75 2.43
1647 1692 7.603024 GCCTTGTGTAACTCTACAAAACTCTAT 59.397 37.037 0.00 0.00 39.75 1.98
1648 1693 9.490379 CCTTGTGTAACTCTACAAAACTCTATT 57.510 33.333 0.00 0.00 39.75 1.73
1651 1696 9.909644 TGTGTAACTCTACAAAACTCTATTCTC 57.090 33.333 0.00 0.00 39.75 2.87
1652 1697 9.356433 GTGTAACTCTACAAAACTCTATTCTCC 57.644 37.037 0.00 0.00 39.75 3.71
1653 1698 9.310449 TGTAACTCTACAAAACTCTATTCTCCT 57.690 33.333 0.00 0.00 35.03 3.69
1654 1699 9.791820 GTAACTCTACAAAACTCTATTCTCCTC 57.208 37.037 0.00 0.00 0.00 3.71
1655 1700 8.658840 AACTCTACAAAACTCTATTCTCCTCT 57.341 34.615 0.00 0.00 0.00 3.69
1656 1701 9.756571 AACTCTACAAAACTCTATTCTCCTCTA 57.243 33.333 0.00 0.00 0.00 2.43
1657 1702 9.181061 ACTCTACAAAACTCTATTCTCCTCTAC 57.819 37.037 0.00 0.00 0.00 2.59
1658 1703 9.403583 CTCTACAAAACTCTATTCTCCTCTACT 57.596 37.037 0.00 0.00 0.00 2.57
1659 1704 9.756571 TCTACAAAACTCTATTCTCCTCTACTT 57.243 33.333 0.00 0.00 0.00 2.24
1672 1717 7.768807 TCTCCTCTACTTTAATAGATGAGGC 57.231 40.000 13.82 0.00 41.08 4.70
1673 1718 7.298374 TCTCCTCTACTTTAATAGATGAGGCA 58.702 38.462 13.82 7.52 41.08 4.75
1674 1719 7.785028 TCTCCTCTACTTTAATAGATGAGGCAA 59.215 37.037 13.82 8.21 41.08 4.52
1675 1720 8.319057 TCCTCTACTTTAATAGATGAGGCAAA 57.681 34.615 0.00 0.00 41.78 3.68
1676 1721 8.938883 TCCTCTACTTTAATAGATGAGGCAAAT 58.061 33.333 0.00 0.00 41.78 2.32
1677 1722 9.213799 CCTCTACTTTAATAGATGAGGCAAATC 57.786 37.037 0.00 0.00 38.74 2.17
1678 1723 9.995003 CTCTACTTTAATAGATGAGGCAAATCT 57.005 33.333 7.08 7.08 38.03 2.40
1683 1728 8.931385 TTTAATAGATGAGGCAAATCTTTTGC 57.069 30.769 14.88 14.88 44.22 3.68
1690 1735 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44
1691 1736 2.754472 GCAAATCTTTTGCCTCCGTTT 58.246 42.857 12.74 0.00 39.38 3.60
1692 1737 3.130633 GCAAATCTTTTGCCTCCGTTTT 58.869 40.909 12.74 0.00 39.38 2.43
1693 1738 3.059665 GCAAATCTTTTGCCTCCGTTTTG 60.060 43.478 12.74 0.00 39.38 2.44
1694 1739 4.367450 CAAATCTTTTGCCTCCGTTTTGA 58.633 39.130 0.00 0.00 0.00 2.69
1695 1740 4.664150 AATCTTTTGCCTCCGTTTTGAA 57.336 36.364 0.00 0.00 0.00 2.69
1696 1741 4.664150 ATCTTTTGCCTCCGTTTTGAAA 57.336 36.364 0.00 0.00 0.00 2.69
1697 1742 4.457834 TCTTTTGCCTCCGTTTTGAAAA 57.542 36.364 0.00 0.00 0.00 2.29
1698 1743 4.822026 TCTTTTGCCTCCGTTTTGAAAAA 58.178 34.783 0.00 0.00 0.00 1.94
2005 2130 3.389656 TCCTCCCGCACAATGTTGATATA 59.610 43.478 0.00 0.00 0.00 0.86
2013 2138 9.773328 CCCGCACAATGTTGATATATATTTTAG 57.227 33.333 0.00 0.00 0.00 1.85
2152 2282 3.366396 TCTTCTTCCGCCTGAGATAGTT 58.634 45.455 0.00 0.00 0.00 2.24
2171 2301 4.457466 AGTTTTGGTAGTCGTTCCACATT 58.543 39.130 0.00 0.00 33.12 2.71
2410 3865 9.685276 AGAGATAGTCATATTCTACAGATCCTG 57.315 37.037 0.00 0.00 37.52 3.86
2431 3886 4.496360 TGGTATCTAGCTAGATCGAGTCG 58.504 47.826 34.18 6.09 41.85 4.18
2432 3887 4.220163 TGGTATCTAGCTAGATCGAGTCGA 59.780 45.833 34.18 19.06 41.85 4.20
2435 3890 3.051327 TCTAGCTAGATCGAGTCGAACG 58.949 50.000 20.74 9.10 39.99 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.817099 CCTTCCAGACCTGCATCGC 60.817 63.158 0.00 0.00 0.00 4.58
1 2 0.250234 TTCCTTCCAGACCTGCATCG 59.750 55.000 0.00 0.00 0.00 3.84
2 3 1.743996 GTTCCTTCCAGACCTGCATC 58.256 55.000 0.00 0.00 0.00 3.91
3 4 0.036010 CGTTCCTTCCAGACCTGCAT 60.036 55.000 0.00 0.00 0.00 3.96
4 5 1.371183 CGTTCCTTCCAGACCTGCA 59.629 57.895 0.00 0.00 0.00 4.41
5 6 1.376037 CCGTTCCTTCCAGACCTGC 60.376 63.158 0.00 0.00 0.00 4.85
6 7 1.296715 CCCGTTCCTTCCAGACCTG 59.703 63.158 0.00 0.00 0.00 4.00
7 8 2.593956 GCCCGTTCCTTCCAGACCT 61.594 63.158 0.00 0.00 0.00 3.85
8 9 2.046217 GCCCGTTCCTTCCAGACC 60.046 66.667 0.00 0.00 0.00 3.85
9 10 2.434359 CGCCCGTTCCTTCCAGAC 60.434 66.667 0.00 0.00 0.00 3.51
10 11 2.920912 ACGCCCGTTCCTTCCAGA 60.921 61.111 0.00 0.00 0.00 3.86
11 12 2.434359 GACGCCCGTTCCTTCCAG 60.434 66.667 0.00 0.00 0.00 3.86
12 13 4.011517 GGACGCCCGTTCCTTCCA 62.012 66.667 0.00 0.00 0.00 3.53
13 14 4.011517 TGGACGCCCGTTCCTTCC 62.012 66.667 0.00 0.00 34.29 3.46
14 15 2.741211 GTGGACGCCCGTTCCTTC 60.741 66.667 0.00 0.00 34.29 3.46
15 16 4.675029 CGTGGACGCCCGTTCCTT 62.675 66.667 0.00 0.00 34.29 3.36
47 48 3.121030 ATCTGCGCGGTTCAGTGC 61.121 61.111 17.37 1.93 46.83 4.40
48 49 1.737735 TCATCTGCGCGGTTCAGTG 60.738 57.895 17.37 8.76 33.48 3.66
49 50 1.738099 GTCATCTGCGCGGTTCAGT 60.738 57.895 17.37 0.00 33.48 3.41
50 51 2.792290 CGTCATCTGCGCGGTTCAG 61.792 63.158 17.37 7.11 0.00 3.02
51 52 2.557059 ATCGTCATCTGCGCGGTTCA 62.557 55.000 17.37 0.00 0.00 3.18
52 53 1.878522 ATCGTCATCTGCGCGGTTC 60.879 57.895 17.37 4.55 0.00 3.62
53 54 2.167219 CATCGTCATCTGCGCGGTT 61.167 57.895 17.37 4.75 0.00 4.44
54 55 2.583319 CATCGTCATCTGCGCGGT 60.583 61.111 17.37 0.20 0.00 5.68
55 56 3.993234 GCATCGTCATCTGCGCGG 61.993 66.667 10.86 10.86 0.00 6.46
56 57 3.993234 GGCATCGTCATCTGCGCG 61.993 66.667 0.00 0.00 39.30 6.86
57 58 2.176273 AAGGCATCGTCATCTGCGC 61.176 57.895 0.00 0.00 39.30 6.09
58 59 0.807275 TCAAGGCATCGTCATCTGCG 60.807 55.000 0.00 0.00 39.30 5.18
59 60 0.935898 CTCAAGGCATCGTCATCTGC 59.064 55.000 0.00 0.00 37.66 4.26
60 61 1.579698 CCTCAAGGCATCGTCATCTG 58.420 55.000 0.00 0.00 0.00 2.90
72 73 2.124570 CCCGGTCATGCCTCAAGG 60.125 66.667 0.00 0.00 38.53 3.61
73 74 2.124570 CCCCGGTCATGCCTCAAG 60.125 66.667 0.00 0.00 34.25 3.02
74 75 2.609299 TCCCCGGTCATGCCTCAA 60.609 61.111 0.00 0.00 34.25 3.02
75 76 3.083349 CTCCCCGGTCATGCCTCA 61.083 66.667 0.00 0.00 34.25 3.86
76 77 4.554036 GCTCCCCGGTCATGCCTC 62.554 72.222 0.00 0.00 34.25 4.70
95 96 3.649277 CTCTTGGGCTCGTCCGTGG 62.649 68.421 0.00 0.00 34.94 4.94
96 97 2.125912 CTCTTGGGCTCGTCCGTG 60.126 66.667 0.00 0.00 34.94 4.94
97 98 3.382832 CCTCTTGGGCTCGTCCGT 61.383 66.667 0.00 0.00 34.94 4.69
98 99 3.068691 TCCTCTTGGGCTCGTCCG 61.069 66.667 0.00 0.00 34.94 4.79
99 100 2.896443 CTCCTCTTGGGCTCGTCC 59.104 66.667 0.00 0.00 34.39 4.79
100 101 2.185608 GCTCCTCTTGGGCTCGTC 59.814 66.667 0.00 0.00 34.39 4.20
101 102 2.284258 AGCTCCTCTTGGGCTCGT 60.284 61.111 0.00 0.00 35.81 4.18
102 103 2.186384 CAGCTCCTCTTGGGCTCG 59.814 66.667 0.00 0.00 37.63 5.03
103 104 1.344191 ATCCAGCTCCTCTTGGGCTC 61.344 60.000 0.00 0.00 37.63 4.70
104 105 1.307691 ATCCAGCTCCTCTTGGGCT 60.308 57.895 0.00 0.00 39.38 5.19
105 106 1.153005 CATCCAGCTCCTCTTGGGC 60.153 63.158 0.00 0.00 34.39 5.36
106 107 1.153005 GCATCCAGCTCCTCTTGGG 60.153 63.158 0.00 0.00 41.15 4.12
107 108 0.464013 CTGCATCCAGCTCCTCTTGG 60.464 60.000 0.00 0.00 45.94 3.61
108 109 3.082165 CTGCATCCAGCTCCTCTTG 57.918 57.895 0.00 0.00 45.94 3.02
117 118 1.738350 CTGAAGTTCTGCTGCATCCAG 59.262 52.381 1.31 7.92 42.13 3.86
118 119 1.817357 CTGAAGTTCTGCTGCATCCA 58.183 50.000 1.31 0.00 30.96 3.41
119 120 0.450983 GCTGAAGTTCTGCTGCATCC 59.549 55.000 23.17 0.00 38.17 3.51
120 121 0.096628 CGCTGAAGTTCTGCTGCATC 59.903 55.000 26.12 0.00 38.90 3.91
121 122 1.303799 CCGCTGAAGTTCTGCTGCAT 61.304 55.000 26.12 0.00 38.90 3.96
122 123 1.962822 CCGCTGAAGTTCTGCTGCA 60.963 57.895 26.12 0.88 38.90 4.41
123 124 2.866028 CCGCTGAAGTTCTGCTGC 59.134 61.111 26.12 14.11 38.90 5.25
124 125 1.909141 CTGCCGCTGAAGTTCTGCTG 61.909 60.000 26.12 22.02 38.90 4.41
125 126 1.670406 CTGCCGCTGAAGTTCTGCT 60.670 57.895 26.12 0.00 38.90 4.24
126 127 2.866028 CTGCCGCTGAAGTTCTGC 59.134 61.111 21.24 21.24 37.88 4.26
127 128 1.509644 TTGCTGCCGCTGAAGTTCTG 61.510 55.000 4.17 4.85 36.97 3.02
128 129 0.819259 TTTGCTGCCGCTGAAGTTCT 60.819 50.000 4.17 0.00 36.97 3.01
129 130 0.386478 CTTTGCTGCCGCTGAAGTTC 60.386 55.000 0.70 0.00 36.97 3.01
130 131 1.656441 CTTTGCTGCCGCTGAAGTT 59.344 52.632 0.70 0.00 36.97 2.66
131 132 2.912624 GCTTTGCTGCCGCTGAAGT 61.913 57.895 14.52 0.00 34.61 3.01
132 133 2.126580 GCTTTGCTGCCGCTGAAG 60.127 61.111 0.70 7.01 36.97 3.02
133 134 2.906388 TGCTTTGCTGCCGCTGAA 60.906 55.556 0.70 0.00 36.97 3.02
134 135 3.359523 CTGCTTTGCTGCCGCTGA 61.360 61.111 0.70 0.00 36.97 4.26
135 136 3.359523 TCTGCTTTGCTGCCGCTG 61.360 61.111 0.70 1.91 36.97 5.18
136 137 3.360340 GTCTGCTTTGCTGCCGCT 61.360 61.111 0.70 0.00 36.97 5.52
137 138 4.410743 GGTCTGCTTTGCTGCCGC 62.411 66.667 0.00 0.00 0.00 6.53
138 139 2.192608 GAAGGTCTGCTTTGCTGCCG 62.193 60.000 0.00 0.00 32.53 5.69
139 140 1.583477 GAAGGTCTGCTTTGCTGCC 59.417 57.895 0.00 0.00 0.00 4.85
140 141 1.583477 GGAAGGTCTGCTTTGCTGC 59.417 57.895 0.00 0.00 0.00 5.25
141 142 1.871772 CGGAAGGTCTGCTTTGCTG 59.128 57.895 0.00 0.00 0.00 4.41
142 143 4.386413 CGGAAGGTCTGCTTTGCT 57.614 55.556 0.00 0.00 0.00 3.91
157 158 0.322456 TTGCTTCAGATCCAACCCGG 60.322 55.000 0.00 0.00 0.00 5.73
158 159 0.804989 GTTGCTTCAGATCCAACCCG 59.195 55.000 1.56 0.00 34.32 5.28
159 160 0.804989 CGTTGCTTCAGATCCAACCC 59.195 55.000 6.30 0.00 36.41 4.11
160 161 1.734465 CTCGTTGCTTCAGATCCAACC 59.266 52.381 6.30 0.00 36.41 3.77
161 162 2.670414 CTCTCGTTGCTTCAGATCCAAC 59.330 50.000 2.68 2.68 36.42 3.77
162 163 2.932622 GCTCTCGTTGCTTCAGATCCAA 60.933 50.000 0.00 0.00 0.00 3.53
163 164 1.404717 GCTCTCGTTGCTTCAGATCCA 60.405 52.381 0.00 0.00 0.00 3.41
164 165 1.285578 GCTCTCGTTGCTTCAGATCC 58.714 55.000 0.00 0.00 0.00 3.36
165 166 1.925847 CTGCTCTCGTTGCTTCAGATC 59.074 52.381 0.00 0.00 0.00 2.75
166 167 2.006056 GCTGCTCTCGTTGCTTCAGAT 61.006 52.381 0.00 0.00 0.00 2.90
167 168 0.668706 GCTGCTCTCGTTGCTTCAGA 60.669 55.000 0.00 0.00 0.00 3.27
168 169 0.947660 TGCTGCTCTCGTTGCTTCAG 60.948 55.000 0.00 0.00 0.00 3.02
169 170 0.532640 TTGCTGCTCTCGTTGCTTCA 60.533 50.000 0.00 0.00 0.00 3.02
170 171 0.110464 GTTGCTGCTCTCGTTGCTTC 60.110 55.000 0.00 0.00 0.00 3.86
171 172 0.533755 AGTTGCTGCTCTCGTTGCTT 60.534 50.000 0.00 0.00 0.00 3.91
172 173 1.070445 AGTTGCTGCTCTCGTTGCT 59.930 52.632 0.00 0.00 0.00 3.91
173 174 1.206072 CAGTTGCTGCTCTCGTTGC 59.794 57.895 0.00 0.00 0.00 4.17
183 184 0.322277 AGATCCACCTGCAGTTGCTG 60.322 55.000 13.81 4.88 42.66 4.41
184 185 0.403271 AAGATCCACCTGCAGTTGCT 59.597 50.000 13.81 0.00 42.66 3.91
185 186 0.807496 GAAGATCCACCTGCAGTTGC 59.193 55.000 13.81 0.00 42.50 4.17
186 187 1.081892 CGAAGATCCACCTGCAGTTG 58.918 55.000 13.81 8.92 0.00 3.16
187 188 0.036010 CCGAAGATCCACCTGCAGTT 60.036 55.000 13.81 0.00 0.00 3.16
188 189 1.599047 CCGAAGATCCACCTGCAGT 59.401 57.895 13.81 0.00 0.00 4.40
189 190 1.153289 CCCGAAGATCCACCTGCAG 60.153 63.158 6.78 6.78 0.00 4.41
190 191 2.669133 CCCCGAAGATCCACCTGCA 61.669 63.158 0.00 0.00 0.00 4.41
191 192 1.700042 ATCCCCGAAGATCCACCTGC 61.700 60.000 0.00 0.00 0.00 4.85
192 193 1.620819 CTATCCCCGAAGATCCACCTG 59.379 57.143 0.00 0.00 0.00 4.00
193 194 1.503784 TCTATCCCCGAAGATCCACCT 59.496 52.381 0.00 0.00 0.00 4.00
194 195 2.011122 TCTATCCCCGAAGATCCACC 57.989 55.000 0.00 0.00 0.00 4.61
195 196 3.055747 GGATTCTATCCCCGAAGATCCAC 60.056 52.174 0.00 0.00 43.88 4.02
196 197 3.173965 GGATTCTATCCCCGAAGATCCA 58.826 50.000 0.00 0.00 43.88 3.41
197 198 3.897141 GGATTCTATCCCCGAAGATCC 57.103 52.381 0.00 0.00 43.88 3.36
208 209 1.343465 TCTTTCGGCCGGGATTCTATC 59.657 52.381 27.83 0.00 0.00 2.08
209 210 1.420430 TCTTTCGGCCGGGATTCTAT 58.580 50.000 27.83 0.00 0.00 1.98
210 211 1.138266 CTTCTTTCGGCCGGGATTCTA 59.862 52.381 27.83 0.00 0.00 2.10
211 212 0.107654 CTTCTTTCGGCCGGGATTCT 60.108 55.000 27.83 0.00 0.00 2.40
212 213 0.107848 TCTTCTTTCGGCCGGGATTC 60.108 55.000 27.83 0.00 0.00 2.52
213 214 0.107654 CTCTTCTTTCGGCCGGGATT 60.108 55.000 27.83 0.00 0.00 3.01
214 215 1.522569 CTCTTCTTTCGGCCGGGAT 59.477 57.895 27.83 0.00 0.00 3.85
215 216 2.978824 CTCTTCTTTCGGCCGGGA 59.021 61.111 27.83 18.09 0.00 5.14
216 217 2.820037 GCTCTTCTTTCGGCCGGG 60.820 66.667 27.83 15.95 0.00 5.73
217 218 2.820037 GGCTCTTCTTTCGGCCGG 60.820 66.667 27.83 9.82 35.08 6.13
219 220 0.321653 TTCAGGCTCTTCTTTCGGCC 60.322 55.000 0.00 0.00 44.38 6.13
220 221 1.082690 CTTCAGGCTCTTCTTTCGGC 58.917 55.000 0.00 0.00 0.00 5.54
221 222 2.615869 CTCTTCAGGCTCTTCTTTCGG 58.384 52.381 0.00 0.00 0.00 4.30
222 223 2.615869 CCTCTTCAGGCTCTTCTTTCG 58.384 52.381 0.00 0.00 30.98 3.46
223 224 2.569404 TCCCTCTTCAGGCTCTTCTTTC 59.431 50.000 0.00 0.00 38.72 2.62
224 225 2.571202 CTCCCTCTTCAGGCTCTTCTTT 59.429 50.000 0.00 0.00 38.72 2.52
225 226 2.187100 CTCCCTCTTCAGGCTCTTCTT 58.813 52.381 0.00 0.00 38.72 2.52
226 227 1.622173 CCTCCCTCTTCAGGCTCTTCT 60.622 57.143 0.00 0.00 38.72 2.85
227 228 0.829990 CCTCCCTCTTCAGGCTCTTC 59.170 60.000 0.00 0.00 38.72 2.87
228 229 0.620121 CCCTCCCTCTTCAGGCTCTT 60.620 60.000 0.00 0.00 38.72 2.85
229 230 1.002792 CCCTCCCTCTTCAGGCTCT 59.997 63.158 0.00 0.00 38.72 4.09
230 231 1.306568 ACCCTCCCTCTTCAGGCTC 60.307 63.158 0.00 0.00 38.72 4.70
231 232 1.614824 CACCCTCCCTCTTCAGGCT 60.615 63.158 0.00 0.00 38.72 4.58
232 233 2.993853 CACCCTCCCTCTTCAGGC 59.006 66.667 0.00 0.00 38.72 4.85
233 234 2.674220 GGCACCCTCCCTCTTCAGG 61.674 68.421 0.00 0.00 39.98 3.86
234 235 1.204113 AAGGCACCCTCCCTCTTCAG 61.204 60.000 0.00 0.00 30.89 3.02
235 236 1.151810 AAGGCACCCTCCCTCTTCA 60.152 57.895 0.00 0.00 30.89 3.02
236 237 1.301293 CAAGGCACCCTCCCTCTTC 59.699 63.158 0.00 0.00 30.89 2.87
237 238 2.234296 CCAAGGCACCCTCCCTCTT 61.234 63.158 0.00 0.00 30.89 2.85
238 239 2.612115 CCAAGGCACCCTCCCTCT 60.612 66.667 0.00 0.00 30.89 3.69
239 240 4.432741 GCCAAGGCACCCTCCCTC 62.433 72.222 6.14 0.00 41.49 4.30
256 257 4.598894 CCAGATCCAGCCTCGCCG 62.599 72.222 0.00 0.00 0.00 6.46
257 258 4.925861 GCCAGATCCAGCCTCGCC 62.926 72.222 0.00 0.00 0.00 5.54
259 260 3.842923 ACGCCAGATCCAGCCTCG 61.843 66.667 0.00 0.00 0.00 4.63
260 261 2.202987 CACGCCAGATCCAGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
261 262 3.790437 CCACGCCAGATCCAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
262 263 3.112205 ATCCACGCCAGATCCAGCC 62.112 63.158 0.00 0.00 0.00 4.85
263 264 1.596477 GATCCACGCCAGATCCAGC 60.596 63.158 0.00 0.00 35.16 4.85
264 265 4.766970 GATCCACGCCAGATCCAG 57.233 61.111 0.00 0.00 35.16 3.86
267 268 2.029666 CGGGATCCACGCCAGATC 59.970 66.667 15.23 2.20 39.57 2.75
275 276 4.148825 ACAGCTCGCGGGATCCAC 62.149 66.667 12.03 3.79 0.00 4.02
276 277 4.147449 CACAGCTCGCGGGATCCA 62.147 66.667 12.03 0.00 0.00 3.41
277 278 4.899239 CCACAGCTCGCGGGATCC 62.899 72.222 12.03 1.92 0.00 3.36
278 279 4.899239 CCCACAGCTCGCGGGATC 62.899 72.222 12.03 0.00 43.21 3.36
282 283 4.680237 TGTTCCCACAGCTCGCGG 62.680 66.667 6.13 0.00 0.00 6.46
283 284 3.114616 CTGTTCCCACAGCTCGCG 61.115 66.667 0.00 0.00 44.16 5.87
290 291 0.681733 GTGCTCTCTCTGTTCCCACA 59.318 55.000 0.00 0.00 0.00 4.17
291 292 0.389166 CGTGCTCTCTCTGTTCCCAC 60.389 60.000 0.00 0.00 0.00 4.61
292 293 0.539669 TCGTGCTCTCTCTGTTCCCA 60.540 55.000 0.00 0.00 0.00 4.37
293 294 0.172352 CTCGTGCTCTCTCTGTTCCC 59.828 60.000 0.00 0.00 0.00 3.97
294 295 0.172352 CCTCGTGCTCTCTCTGTTCC 59.828 60.000 0.00 0.00 0.00 3.62
295 296 0.457681 GCCTCGTGCTCTCTCTGTTC 60.458 60.000 0.00 0.00 36.87 3.18
296 297 1.589113 GCCTCGTGCTCTCTCTGTT 59.411 57.895 0.00 0.00 36.87 3.16
297 298 2.347322 GGCCTCGTGCTCTCTCTGT 61.347 63.158 0.00 0.00 40.92 3.41
298 299 2.493973 GGCCTCGTGCTCTCTCTG 59.506 66.667 0.00 0.00 40.92 3.35
299 300 3.137459 CGGCCTCGTGCTCTCTCT 61.137 66.667 0.00 0.00 40.92 3.10
316 317 2.626780 GCCAAGGTTTGCTCGGGAC 61.627 63.158 0.00 0.00 0.00 4.46
317 318 2.282180 GCCAAGGTTTGCTCGGGA 60.282 61.111 0.00 0.00 0.00 5.14
318 319 3.737172 CGCCAAGGTTTGCTCGGG 61.737 66.667 0.00 0.00 0.00 5.14
319 320 2.978010 ACGCCAAGGTTTGCTCGG 60.978 61.111 0.00 0.00 32.19 4.63
320 321 2.252260 CACGCCAAGGTTTGCTCG 59.748 61.111 0.00 0.00 0.00 5.03
321 322 2.644992 CCACGCCAAGGTTTGCTC 59.355 61.111 0.00 0.00 0.00 4.26
322 323 2.912025 CCCACGCCAAGGTTTGCT 60.912 61.111 0.00 0.00 0.00 3.91
323 324 3.989787 CCCCACGCCAAGGTTTGC 61.990 66.667 0.00 0.00 0.00 3.68
324 325 1.830408 TTCCCCACGCCAAGGTTTG 60.830 57.895 0.00 0.00 0.00 2.93
325 326 1.830847 GTTCCCCACGCCAAGGTTT 60.831 57.895 0.00 0.00 0.00 3.27
326 327 2.203437 GTTCCCCACGCCAAGGTT 60.203 61.111 0.00 0.00 0.00 3.50
327 328 4.280019 GGTTCCCCACGCCAAGGT 62.280 66.667 0.00 0.00 0.00 3.50
336 337 3.814391 TTTCCTCCCGGGTTCCCCA 62.814 63.158 22.86 0.00 45.83 4.96
337 338 2.937136 TTTCCTCCCGGGTTCCCC 60.937 66.667 22.86 0.00 41.09 4.81
338 339 2.353958 GTTTCCTCCCGGGTTCCC 59.646 66.667 22.86 0.82 36.25 3.97
339 340 2.353958 GGTTTCCTCCCGGGTTCC 59.646 66.667 22.86 11.06 36.25 3.62
340 341 2.046604 CGGTTTCCTCCCGGGTTC 60.047 66.667 22.86 5.64 41.78 3.62
341 342 4.340246 GCGGTTTCCTCCCGGGTT 62.340 66.667 22.86 0.00 45.57 4.11
348 349 4.084888 CAACGCCGCGGTTTCCTC 62.085 66.667 28.70 7.66 0.00 3.71
359 360 4.785453 CCTCTCCCCTGCAACGCC 62.785 72.222 0.00 0.00 0.00 5.68
360 361 4.021925 ACCTCTCCCCTGCAACGC 62.022 66.667 0.00 0.00 0.00 4.84
361 362 2.046892 CACCTCTCCCCTGCAACG 60.047 66.667 0.00 0.00 0.00 4.10
362 363 2.360475 GCACCTCTCCCCTGCAAC 60.360 66.667 0.00 0.00 0.00 4.17
363 364 4.020617 CGCACCTCTCCCCTGCAA 62.021 66.667 0.00 0.00 0.00 4.08
370 371 4.767255 CACCAGCCGCACCTCTCC 62.767 72.222 0.00 0.00 0.00 3.71
371 372 3.240134 TTCACCAGCCGCACCTCTC 62.240 63.158 0.00 0.00 0.00 3.20
372 373 3.241530 TTCACCAGCCGCACCTCT 61.242 61.111 0.00 0.00 0.00 3.69
373 374 2.743928 CTTCACCAGCCGCACCTC 60.744 66.667 0.00 0.00 0.00 3.85
374 375 4.335647 CCTTCACCAGCCGCACCT 62.336 66.667 0.00 0.00 0.00 4.00
375 376 4.329545 TCCTTCACCAGCCGCACC 62.330 66.667 0.00 0.00 0.00 5.01
376 377 2.743928 CTCCTTCACCAGCCGCAC 60.744 66.667 0.00 0.00 0.00 5.34
377 378 3.241530 ACTCCTTCACCAGCCGCA 61.242 61.111 0.00 0.00 0.00 5.69
378 379 2.743928 CACTCCTTCACCAGCCGC 60.744 66.667 0.00 0.00 0.00 6.53
379 380 2.046892 CCACTCCTTCACCAGCCG 60.047 66.667 0.00 0.00 0.00 5.52
380 381 2.360475 GCCACTCCTTCACCAGCC 60.360 66.667 0.00 0.00 0.00 4.85
381 382 2.743928 CGCCACTCCTTCACCAGC 60.744 66.667 0.00 0.00 0.00 4.85
382 383 2.743928 GCGCCACTCCTTCACCAG 60.744 66.667 0.00 0.00 0.00 4.00
383 384 4.329545 GGCGCCACTCCTTCACCA 62.330 66.667 24.80 0.00 0.00 4.17
459 460 0.323451 AAAAAGGATGTCGCTCCCCC 60.323 55.000 0.00 0.00 35.79 5.40
460 461 3.266240 AAAAAGGATGTCGCTCCCC 57.734 52.632 0.00 0.00 35.79 4.81
477 478 8.595533 GCATCTATCATATAATCTTTCGCGAAA 58.404 33.333 30.47 30.47 0.00 3.46
478 479 7.759433 TGCATCTATCATATAATCTTTCGCGAA 59.241 33.333 19.38 19.38 0.00 4.70
479 480 7.257722 TGCATCTATCATATAATCTTTCGCGA 58.742 34.615 3.71 3.71 0.00 5.87
480 481 7.455331 TGCATCTATCATATAATCTTTCGCG 57.545 36.000 0.00 0.00 0.00 5.87
513 514 7.915397 CCTGCAAGCGTTCATTATAGTTAAATT 59.085 33.333 0.00 0.00 0.00 1.82
613 614 2.424812 GGCCATGATACCTTCCCACATT 60.425 50.000 0.00 0.00 0.00 2.71
627 628 0.115944 TCCACCCATTTTGGCCATGA 59.884 50.000 6.09 0.00 35.79 3.07
695 698 5.592282 TGTTGAACAGTGAAATTAGCTCCAA 59.408 36.000 0.00 0.00 0.00 3.53
774 778 5.617252 TCAACCGAAACCACTCTTTTCTAT 58.383 37.500 0.00 0.00 31.82 1.98
797 801 4.574674 TGGCACTTTGTTATGAGGATCT 57.425 40.909 0.00 0.00 34.92 2.75
1109 1117 2.503765 TCAGGAGAATTCATACCGGCAA 59.496 45.455 8.44 0.00 0.00 4.52
1187 1197 7.758609 TGATAAGTCAACATCATCCCCATATT 58.241 34.615 0.00 0.00 0.00 1.28
1188 1198 7.333779 TGATAAGTCAACATCATCCCCATAT 57.666 36.000 0.00 0.00 0.00 1.78
1392 1434 1.339055 TGCATTTCTTCCTCCCTCACG 60.339 52.381 0.00 0.00 0.00 4.35
1521 1566 5.495640 GCCTCATCTATAATAAGCTTGGCT 58.504 41.667 9.86 0.00 42.56 4.75
1522 1567 4.637977 GGCCTCATCTATAATAAGCTTGGC 59.362 45.833 9.86 8.34 35.24 4.52
1524 1569 6.150140 GGTTGGCCTCATCTATAATAAGCTTG 59.850 42.308 9.86 0.00 0.00 4.01
1525 1570 6.044871 AGGTTGGCCTCATCTATAATAAGCTT 59.955 38.462 3.32 3.48 42.67 3.74
1527 1572 5.810095 AGGTTGGCCTCATCTATAATAAGC 58.190 41.667 3.32 0.00 42.67 3.09
1528 1573 7.989741 CCATAGGTTGGCCTCATCTATAATAAG 59.010 40.741 3.32 0.00 45.64 1.73
1529 1574 7.092444 CCCATAGGTTGGCCTCATCTATAATAA 60.092 40.741 3.32 0.00 45.64 1.40
1531 1576 5.192522 CCCATAGGTTGGCCTCATCTATAAT 59.807 44.000 3.32 0.00 45.64 1.28
1532 1577 4.536090 CCCATAGGTTGGCCTCATCTATAA 59.464 45.833 3.32 0.00 45.64 0.98
1533 1578 4.104086 CCCATAGGTTGGCCTCATCTATA 58.896 47.826 3.32 0.00 45.64 1.31
1534 1579 2.915604 CCCATAGGTTGGCCTCATCTAT 59.084 50.000 3.32 3.20 45.64 1.98
1535 1580 2.338809 CCCATAGGTTGGCCTCATCTA 58.661 52.381 3.32 0.45 45.64 1.98
1536 1581 1.143813 CCCATAGGTTGGCCTCATCT 58.856 55.000 3.32 0.00 45.64 2.90
1537 1582 3.733709 CCCATAGGTTGGCCTCATC 57.266 57.895 3.32 0.00 45.64 2.92
1548 1593 0.474184 CCCCTGCAGTAACCCATAGG 59.526 60.000 13.81 2.82 40.04 2.57
1549 1594 0.179018 GCCCCTGCAGTAACCCATAG 60.179 60.000 13.81 0.00 37.47 2.23
1550 1595 0.623324 AGCCCCTGCAGTAACCCATA 60.623 55.000 13.81 0.00 41.13 2.74
1551 1596 0.623324 TAGCCCCTGCAGTAACCCAT 60.623 55.000 13.81 0.00 41.13 4.00
1552 1597 0.842905 TTAGCCCCTGCAGTAACCCA 60.843 55.000 13.81 0.00 41.13 4.51
1553 1598 0.330267 TTTAGCCCCTGCAGTAACCC 59.670 55.000 13.81 0.00 41.13 4.11
1554 1599 1.271707 TGTTTAGCCCCTGCAGTAACC 60.272 52.381 13.81 0.00 41.13 2.85
1555 1600 2.194201 TGTTTAGCCCCTGCAGTAAC 57.806 50.000 13.81 7.40 41.13 2.50
1556 1601 2.961531 TTGTTTAGCCCCTGCAGTAA 57.038 45.000 13.81 1.44 41.13 2.24
1557 1602 3.449746 AATTGTTTAGCCCCTGCAGTA 57.550 42.857 13.81 0.00 41.13 2.74
1558 1603 2.309136 AATTGTTTAGCCCCTGCAGT 57.691 45.000 13.81 0.00 41.13 4.40
1559 1604 2.689983 CCTAATTGTTTAGCCCCTGCAG 59.310 50.000 6.78 6.78 41.13 4.41
1560 1605 2.622977 CCCTAATTGTTTAGCCCCTGCA 60.623 50.000 0.00 0.00 41.13 4.41
1561 1606 2.031870 CCCTAATTGTTTAGCCCCTGC 58.968 52.381 0.00 0.00 34.62 4.85
1562 1607 3.662759 TCCCTAATTGTTTAGCCCCTG 57.337 47.619 0.00 0.00 34.62 4.45
1563 1608 4.685513 TTTCCCTAATTGTTTAGCCCCT 57.314 40.909 0.00 0.00 34.62 4.79
1564 1609 5.950544 ATTTTCCCTAATTGTTTAGCCCC 57.049 39.130 0.00 0.00 34.62 5.80
1573 1618 4.675114 GCGCGATACAATTTTCCCTAATTG 59.325 41.667 12.10 7.36 46.20 2.32
1574 1619 4.553938 CGCGCGATACAATTTTCCCTAATT 60.554 41.667 28.94 0.00 0.00 1.40
1575 1620 3.059188 CGCGCGATACAATTTTCCCTAAT 60.059 43.478 28.94 0.00 0.00 1.73
1576 1621 2.285756 CGCGCGATACAATTTTCCCTAA 59.714 45.455 28.94 0.00 0.00 2.69
1577 1622 1.862201 CGCGCGATACAATTTTCCCTA 59.138 47.619 28.94 0.00 0.00 3.53
1578 1623 0.655733 CGCGCGATACAATTTTCCCT 59.344 50.000 28.94 0.00 0.00 4.20
1579 1624 0.653636 TCGCGCGATACAATTTTCCC 59.346 50.000 31.40 0.00 0.00 3.97
1580 1625 1.326548 ACTCGCGCGATACAATTTTCC 59.673 47.619 34.86 0.00 0.00 3.13
1581 1626 2.713927 ACTCGCGCGATACAATTTTC 57.286 45.000 34.86 0.00 0.00 2.29
1582 1627 4.789095 ATTACTCGCGCGATACAATTTT 57.211 36.364 34.86 12.08 0.00 1.82
1583 1628 4.033587 ACAATTACTCGCGCGATACAATTT 59.966 37.500 34.86 21.23 0.00 1.82
1584 1629 3.554324 ACAATTACTCGCGCGATACAATT 59.446 39.130 34.86 29.77 0.00 2.32
1585 1630 3.120792 ACAATTACTCGCGCGATACAAT 58.879 40.909 34.86 26.35 0.00 2.71
1586 1631 2.532235 ACAATTACTCGCGCGATACAA 58.468 42.857 34.86 25.36 0.00 2.41
1587 1632 2.114056 GACAATTACTCGCGCGATACA 58.886 47.619 34.86 19.75 0.00 2.29
1588 1633 2.114056 TGACAATTACTCGCGCGATAC 58.886 47.619 34.86 17.14 0.00 2.24
1589 1634 2.478547 TGACAATTACTCGCGCGATA 57.521 45.000 34.86 23.06 0.00 2.92
1590 1635 1.522676 CATGACAATTACTCGCGCGAT 59.477 47.619 34.86 24.11 0.00 4.58
1591 1636 0.920664 CATGACAATTACTCGCGCGA 59.079 50.000 32.60 32.60 0.00 5.87
1592 1637 0.651610 GCATGACAATTACTCGCGCG 60.652 55.000 26.76 26.76 0.00 6.86
1593 1638 0.316196 GGCATGACAATTACTCGCGC 60.316 55.000 0.00 0.00 0.00 6.86
1594 1639 0.043053 CGGCATGACAATTACTCGCG 60.043 55.000 0.00 0.00 0.00 5.87
1595 1640 1.006832 ACGGCATGACAATTACTCGC 58.993 50.000 0.00 0.00 0.00 5.03
1596 1641 3.444916 AGTACGGCATGACAATTACTCG 58.555 45.455 0.00 0.00 0.00 4.18
1597 1642 4.026804 CGAAGTACGGCATGACAATTACTC 60.027 45.833 0.00 0.00 38.46 2.59
1598 1643 3.863424 CGAAGTACGGCATGACAATTACT 59.137 43.478 0.00 0.00 38.46 2.24
1599 1644 4.178156 CGAAGTACGGCATGACAATTAC 57.822 45.455 0.00 0.00 38.46 1.89
1612 1657 1.723003 GTTACACAAGGCCGAAGTACG 59.277 52.381 0.00 0.00 42.18 3.67
1613 1658 2.991866 GAGTTACACAAGGCCGAAGTAC 59.008 50.000 0.00 0.00 0.00 2.73
1614 1659 2.895404 AGAGTTACACAAGGCCGAAGTA 59.105 45.455 0.00 0.00 0.00 2.24
1615 1660 1.692519 AGAGTTACACAAGGCCGAAGT 59.307 47.619 0.00 0.00 0.00 3.01
1616 1661 2.457366 AGAGTTACACAAGGCCGAAG 57.543 50.000 0.00 0.00 0.00 3.79
1617 1662 2.629137 TGTAGAGTTACACAAGGCCGAA 59.371 45.455 0.00 0.00 34.91 4.30
1618 1663 2.241160 TGTAGAGTTACACAAGGCCGA 58.759 47.619 0.00 0.00 34.91 5.54
1619 1664 2.736144 TGTAGAGTTACACAAGGCCG 57.264 50.000 0.00 0.00 34.91 6.13
1620 1665 4.820173 AGTTTTGTAGAGTTACACAAGGCC 59.180 41.667 0.00 0.00 39.44 5.19
1621 1666 5.758784 AGAGTTTTGTAGAGTTACACAAGGC 59.241 40.000 0.00 0.00 39.44 4.35
1622 1667 9.490379 AATAGAGTTTTGTAGAGTTACACAAGG 57.510 33.333 0.00 0.00 39.44 3.61
1625 1670 9.909644 GAGAATAGAGTTTTGTAGAGTTACACA 57.090 33.333 0.00 0.00 39.44 3.72
1626 1671 9.356433 GGAGAATAGAGTTTTGTAGAGTTACAC 57.644 37.037 0.00 0.00 39.44 2.90
1627 1672 9.310449 AGGAGAATAGAGTTTTGTAGAGTTACA 57.690 33.333 0.00 0.00 38.00 2.41
1628 1673 9.791820 GAGGAGAATAGAGTTTTGTAGAGTTAC 57.208 37.037 0.00 0.00 0.00 2.50
1629 1674 9.756571 AGAGGAGAATAGAGTTTTGTAGAGTTA 57.243 33.333 0.00 0.00 0.00 2.24
1630 1675 8.658840 AGAGGAGAATAGAGTTTTGTAGAGTT 57.341 34.615 0.00 0.00 0.00 3.01
1631 1676 9.181061 GTAGAGGAGAATAGAGTTTTGTAGAGT 57.819 37.037 0.00 0.00 0.00 3.24
1632 1677 9.403583 AGTAGAGGAGAATAGAGTTTTGTAGAG 57.596 37.037 0.00 0.00 0.00 2.43
1633 1678 9.756571 AAGTAGAGGAGAATAGAGTTTTGTAGA 57.243 33.333 0.00 0.00 0.00 2.59
1650 1695 7.914427 TTGCCTCATCTATTAAAGTAGAGGA 57.086 36.000 19.29 12.46 43.78 3.71
1651 1696 9.213799 GATTTGCCTCATCTATTAAAGTAGAGG 57.786 37.037 0.00 0.00 43.84 3.69
1652 1697 9.995003 AGATTTGCCTCATCTATTAAAGTAGAG 57.005 33.333 0.00 0.00 34.41 2.43
1657 1702 9.028185 GCAAAAGATTTGCCTCATCTATTAAAG 57.972 33.333 15.12 0.00 39.38 1.85
1658 1703 8.931385 GCAAAAGATTTGCCTCATCTATTAAA 57.069 30.769 15.12 0.00 39.38 1.52
1671 1716 2.438868 AACGGAGGCAAAAGATTTGC 57.561 45.000 17.18 17.18 44.22 3.68
1672 1717 4.367450 TCAAAACGGAGGCAAAAGATTTG 58.633 39.130 0.00 0.00 0.00 2.32
1673 1718 4.664150 TCAAAACGGAGGCAAAAGATTT 57.336 36.364 0.00 0.00 0.00 2.17
1674 1719 4.664150 TTCAAAACGGAGGCAAAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
1675 1720 4.664150 TTTCAAAACGGAGGCAAAAGAT 57.336 36.364 0.00 0.00 0.00 2.40
1676 1721 4.457834 TTTTCAAAACGGAGGCAAAAGA 57.542 36.364 0.00 0.00 0.00 2.52
1697 1742 4.714308 TGGTGTGAGTCCCAAATTCTTTTT 59.286 37.500 0.00 0.00 0.00 1.94
1698 1743 4.285863 TGGTGTGAGTCCCAAATTCTTTT 58.714 39.130 0.00 0.00 0.00 2.27
1699 1744 3.909732 TGGTGTGAGTCCCAAATTCTTT 58.090 40.909 0.00 0.00 0.00 2.52
1945 2060 3.745975 TCAACAGAGTTATTGTGCTTCCG 59.254 43.478 0.00 0.00 0.00 4.30
2005 2130 9.520515 ACTTTGGAAGTGTCATGACTAAAATAT 57.479 29.630 25.55 6.06 41.01 1.28
2013 2138 4.385825 TGGTACTTTGGAAGTGTCATGAC 58.614 43.478 19.27 19.27 42.84 3.06
2152 2282 2.550606 GCAATGTGGAACGACTACCAAA 59.449 45.455 0.00 0.00 42.39 3.28
2171 2301 1.421268 AGGGATGAAATAGCCGATGCA 59.579 47.619 0.00 0.00 41.13 3.96
2410 3865 4.746729 TCGACTCGATCTAGCTAGATACC 58.253 47.826 31.49 20.61 42.79 2.73
2458 3916 4.097863 GCGGCTGTTAACGGTGGC 62.098 66.667 15.73 14.51 0.00 5.01
2461 3919 2.103537 AATTAGCGGCTGTTAACGGT 57.896 45.000 13.86 4.83 43.70 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.