AutoCloner

Multiple sequence alignment - TraesCS1A01G131800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G131800	chr1A	100.000	2526	0	0	1	2526	177433799	177431274	0.000000e+00	4665.0
1	TraesCS1A01G131800	chr1A	90.429	2236	173	16	1	2229	177425943	177423742	0.000000e+00	2905.0
2	TraesCS1A01G131800	chr1A	86.709	1723	198	24	815	2526	79998351	80000053	0.000000e+00	1884.0
3	TraesCS1A01G131800	chr1A	86.301	1730	205	26	809	2526	79986030	79987739	0.000000e+00	1853.0
4	TraesCS1A01G131800	chr1A	85.908	589	46	13	1	579	204319532	204318971	6.020000e-166	593.0
5	TraesCS1A01G131800	chr1A	87.251	502	54	6	86	579	204304214	204303715	4.720000e-157	564.0
6	TraesCS1A01G131800	chr1A	89.508	305	30	2	497	801	111964333	111964635	3.940000e-103	385.0
7	TraesCS1A01G131800	chr1A	88.449	303	34	1	497	799	111697857	111698158	5.140000e-97	364.0
8	TraesCS1A01G131800	chr1A	84.298	242	29	9	1	239	355427614	355427849	7.030000e-56	228.0
9	TraesCS1A01G131800	chr1A	75.619	525	73	39	1360	1855	195170010	195169512	2.550000e-50	209.0
10	TraesCS1A01G131800	chr1A	90.588	85	7	1	715	799	170463393	170463310	7.390000e-21	111.0
11	TraesCS1A01G131800	chr2A	88.042	1731	175	24	811	2526	429466996	429465283	0.000000e+00	2021.0
12	TraesCS1A01G131800	chr2A	87.308	1434	158	17	1104	2526	429413446	429412026	0.000000e+00	1618.0
13	TraesCS1A01G131800	chr2A	86.551	1041	121	11	1490	2524	500546218	500547245	0.000000e+00	1129.0
14	TraesCS1A01G131800	chr2A	90.346	549	46	6	1	546	429459677	429459133	0.000000e+00	713.0
15	TraesCS1A01G131800	chr2A	88.376	542	45	10	1	540	429467794	429467269	9.860000e-179	636.0
16	TraesCS1A01G131800	chr2A	83.860	601	74	15	1477	2068	210903051	210902465	3.670000e-153	551.0
17	TraesCS1A01G131800	chr2A	89.333	150	12	4	1354	1501	279056537	279056684	4.290000e-43	185.0
18	TraesCS1A01G131800	chr2A	87.324	142	18	0	1237	1378	290324748	290324889	2.010000e-36	163.0
19	TraesCS1A01G131800	chr3A	93.452	840	51	4	1690	2526	602623998	602623160	0.000000e+00	1243.0
20	TraesCS1A01G131800	chr3A	87.021	1017	103	20	1520	2526	290279493	290278496	0.000000e+00	1120.0
21	TraesCS1A01G131800	chr3A	87.179	273	35	0	529	801	431879561	431879833	6.790000e-81	311.0
22	TraesCS1A01G131800	chr6A	88.107	1051	104	15	1478	2523	389255878	389254844	0.000000e+00	1229.0
23	TraesCS1A01G131800	chr6A	87.903	124	14	1	502	625	417042638	417042516	7.280000e-31	145.0
24	TraesCS1A01G131800	chr6A	93.151	73	5	0	722	794	283066695	283066623	9.560000e-20	108.0
25	TraesCS1A01G131800	chr5A	89.178	961	91	6	1568	2526	343025763	343026712	0.000000e+00	1186.0
26	TraesCS1A01G131800	chr5A	89.826	344	30	5	840	1180	412783662	412784003	1.070000e-118	436.0
27	TraesCS1A01G131800	chr5A	91.165	249	22	0	550	798	412783418	412783666	3.110000e-89	339.0
28	TraesCS1A01G131800	chr7A	90.826	327	28	2	1236	1560	370142397	370142071	1.070000e-118	436.0
29	TraesCS1A01G131800	chr7A	86.996	223	21	7	1	218	347595769	347595550	6.980000e-61	244.0
30	TraesCS1A01G131800	chr7A	86.547	223	22	7	1	218	347604068	347603849	3.250000e-59	239.0
31	TraesCS1A01G131800	chr7A	96.923	65	2	0	737	801	309719933	309719869	2.660000e-20	110.0
32	TraesCS1A01G131800	chr5D	87.566	378	35	7	872	1243	273834066	273833695	6.460000e-116	427.0
33	TraesCS1A01G131800	chr4D	88.398	362	31	6	877	1233	95163961	95163606	2.320000e-115	425.0
34	TraesCS1A01G131800	chr4D	86.508	378	39	7	872	1243	369632827	369632456	3.030000e-109	405.0
35	TraesCS1A01G131800	chr2D	87.268	377	37	6	872	1243	424197488	424197118	1.080000e-113	420.0
36	TraesCS1A01G131800	chr4A	88.852	305	23	7	497	801	72108671	72108964	5.140000e-97	364.0
37	TraesCS1A01G131800	chr4A	87.892	223	19	7	1	218	429013698	429013479	3.220000e-64	255.0
38	TraesCS1A01G131800	chr4A	91.736	121	10	0	377	497	117817058	117816938	4.320000e-38	169.0
39	TraesCS1A01G131800	chr4A	89.412	85	8	1	385	468	290808057	290808141	3.440000e-19	106.0
40	TraesCS1A01G131800	chr4A	91.667	72	6	0	670	741	237296931	237296860	1.600000e-17	100.0
41	TraesCS1A01G131800	chr6D	89.542	153	14	2	1357	1508	273840816	273840665	2.560000e-45	193.0
42	TraesCS1A01G131800	chr6D	94.737	38	1	1	427	464	375957020	375957056	9.760000e-05	58.4
43	TraesCS1A01G131800	chr6D	94.737	38	1	1	427	464	375965569	375965605	9.760000e-05	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G131800	chr1A	177431274	177433799	2525	True	4665.0	4665	100.0000	1	2526	1	chr1A.!!$R3	2525
1	TraesCS1A01G131800	chr1A	177423742	177425943	2201	True	2905.0	2905	90.4290	1	2229	1	chr1A.!!$R2	2228
2	TraesCS1A01G131800	chr1A	79998351	80000053	1702	False	1884.0	1884	86.7090	815	2526	1	chr1A.!!$F2	1711
3	TraesCS1A01G131800	chr1A	79986030	79987739	1709	False	1853.0	1853	86.3010	809	2526	1	chr1A.!!$F1	1717
4	TraesCS1A01G131800	chr1A	204318971	204319532	561	True	593.0	593	85.9080	1	579	1	chr1A.!!$R6	578
5	TraesCS1A01G131800	chr2A	429412026	429413446	1420	True	1618.0	1618	87.3080	1104	2526	1	chr2A.!!$R2	1422
6	TraesCS1A01G131800	chr2A	429465283	429467794	2511	True	1328.5	2021	88.2090	1	2526	2	chr2A.!!$R4	2525
7	TraesCS1A01G131800	chr2A	500546218	500547245	1027	False	1129.0	1129	86.5510	1490	2524	1	chr2A.!!$F3	1034
8	TraesCS1A01G131800	chr2A	429459133	429459677	544	True	713.0	713	90.3460	1	546	1	chr2A.!!$R3	545
9	TraesCS1A01G131800	chr2A	210902465	210903051	586	True	551.0	551	83.8600	1477	2068	1	chr2A.!!$R1	591
10	TraesCS1A01G131800	chr3A	602623160	602623998	838	True	1243.0	1243	93.4520	1690	2526	1	chr3A.!!$R2	836
11	TraesCS1A01G131800	chr3A	290278496	290279493	997	True	1120.0	1120	87.0210	1520	2526	1	chr3A.!!$R1	1006
12	TraesCS1A01G131800	chr6A	389254844	389255878	1034	True	1229.0	1229	88.1070	1478	2523	1	chr6A.!!$R2	1045
13	TraesCS1A01G131800	chr5A	343025763	343026712	949	False	1186.0	1186	89.1780	1568	2526	1	chr5A.!!$F1	958
14	TraesCS1A01G131800	chr5A	412783418	412784003	585	False	387.5	436	90.4955	550	1180	2	chr5A.!!$F2	630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
984	1120	0.251634	CCTCCACAAGAAGCCTCCTC	59.748	60.0	0.0	0.0	0.0	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1866	2017	1.199789	GAAGCATTTGTCATCGTGGCA	59.8	47.619	0.0	0.0	0.0	4.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	5.476091	TTGGACACTTCAAAAACCAAGTT	57.524	34.783	0.00	0.00	34.15	2.66
113	114	9.223099	CTTTCAATCTTGGCCATTTCTATTTTT	57.777	29.630	6.09	0.00	0.00	1.94
142	143	7.192232	GGATCAAGCACATTTTTATGAGTCTC	58.808	38.462	0.00	0.00	0.00	3.36
143	144	7.148188	GGATCAAGCACATTTTTATGAGTCTCA	60.148	37.037	4.68	4.68	0.00	3.27
170	171	8.424133	GGAAATTAACCTCATGCCAAATTCTAT	58.576	33.333	0.00	0.00	0.00	1.98
178	179	6.012337	TCATGCCAAATTCTATCCCTAACA	57.988	37.500	0.00	0.00	0.00	2.41
337	349	1.767759	CCTCTAAGGCCCAACCATTG	58.232	55.000	0.00	0.00	43.14	2.82
349	365	2.025321	CCAACCATTGTAACCCTAGCCT	60.025	50.000	0.00	0.00	0.00	4.58
358	374	1.509548	AACCCTAGCCTGCACCCAAT	61.510	55.000	0.00	0.00	0.00	3.16
429	445	2.819595	GCATGATCCCACGCACGT	60.820	61.111	0.00	0.00	30.81	4.49
474	491	0.687757	CTTCTCTCGACCCATCCCCA	60.688	60.000	0.00	0.00	0.00	4.96
517	534	2.614969	TCCATCCCTGCAGCCCTT	60.615	61.111	8.66	0.00	0.00	3.95
655	788	0.470080	CTCCTCCCGCCTCCTTCATA	60.470	60.000	0.00	0.00	0.00	2.15
680	813	2.675423	CCTCCACGTCGTCTCCCA	60.675	66.667	0.00	0.00	0.00	4.37
795	928	0.872021	GCAATCCCGTACTCTGCTCG	60.872	60.000	0.00	0.00	0.00	5.03
797	930	2.017559	AATCCCGTACTCTGCTCGCC	62.018	60.000	0.00	0.00	0.00	5.54
798	931	4.208686	CCCGTACTCTGCTCGCCC	62.209	72.222	0.00	0.00	0.00	6.13
799	932	4.554363	CCGTACTCTGCTCGCCCG	62.554	72.222	0.00	0.00	0.00	6.13
801	934	4.874977	GTACTCTGCTCGCCCGCC	62.875	72.222	0.00	0.00	0.00	6.13
846	980	4.838152	TCTTGCTCCATCGCCGCC	62.838	66.667	0.00	0.00	0.00	6.13
890	1024	1.378778	CCGACTCCTTCTCCCTCGT	60.379	63.158	0.00	0.00	0.00	4.18
941	1077	3.699894	ACCTGCAGCTGACGGAGG	61.700	66.667	20.43	17.61	0.00	4.30
975	1111	3.072476	GGCTCTGCCTCCACAAGA	58.928	61.111	0.73	0.00	46.69	3.02
984	1120	0.251634	CCTCCACAAGAAGCCTCCTC	59.748	60.000	0.00	0.00	0.00	3.71
1007	1143	0.108207	CCTGTCATCTCCATGGCCTC	59.892	60.000	6.96	0.00	33.17	4.70
1095	1232	1.683011	CCGCCAAGTCCAAGGATGATT	60.683	52.381	0.00	0.00	0.00	2.57
1097	1234	2.681976	CGCCAAGTCCAAGGATGATTCT	60.682	50.000	0.00	0.00	0.00	2.40
1127	1264	1.214589	GACGCGCCAAGTTCCTCTA	59.785	57.895	5.73	0.00	0.00	2.43
1234	1371	2.529454	TACCATCCCGTGCATTGCGT	62.529	55.000	3.84	0.00	0.00	5.24
1277	1414	3.383698	AGGAGGATCTCTACCGTTGAA	57.616	47.619	0.00	0.00	33.73	2.69
1325	1462	3.002791	ACGACTACTTCCACGACGATAA	58.997	45.455	0.00	0.00	0.00	1.75
1340	1477	6.682020	CACGACGATAAGAGAACAACTACTAC	59.318	42.308	0.00	0.00	0.00	2.73
1398	1535	4.023107	CCCGAACATCTACGATCTGTGTAT	60.023	45.833	0.00	0.00	0.00	2.29
1430	1567	3.395639	GGTGTGTATTTCGTCAAGTCCA	58.604	45.455	0.00	0.00	0.00	4.02
1527	1666	0.107081	TTCAACGACACCCCGTGAAT	59.893	50.000	0.00	0.00	42.54	2.57
1652	1794	5.670792	ATGAGATGCATGTTTGGATGTTT	57.329	34.783	2.46	0.00	33.54	2.83
1653	1795	4.811908	TGAGATGCATGTTTGGATGTTTG	58.188	39.130	2.46	0.00	33.54	2.93
1654	1796	4.178540	GAGATGCATGTTTGGATGTTTGG	58.821	43.478	2.46	0.00	33.54	3.28
1655	1797	3.833650	AGATGCATGTTTGGATGTTTGGA	59.166	39.130	2.46	0.00	33.54	3.53
1656	1798	4.468510	AGATGCATGTTTGGATGTTTGGAT	59.531	37.500	2.46	0.00	33.54	3.41
1657	1799	3.927854	TGCATGTTTGGATGTTTGGATG	58.072	40.909	0.00	0.00	0.00	3.51
1658	1800	3.324268	TGCATGTTTGGATGTTTGGATGT	59.676	39.130	0.00	0.00	0.00	3.06
1659	1801	4.202336	TGCATGTTTGGATGTTTGGATGTT	60.202	37.500	0.00	0.00	0.00	2.71
1683	1825	2.736682	CGCCCGTGAACGATTGTCC	61.737	63.158	4.03	0.00	43.02	4.02
1685	1827	1.359459	GCCCGTGAACGATTGTCCTC	61.359	60.000	4.03	0.00	43.02	3.71
1763	1909	1.086067	ATCCTTGCATGACACGCTCG	61.086	55.000	0.00	0.00	0.00	5.03
1775	1921	2.018670	CGCTCGCGTCACATTTCG	59.981	61.111	5.77	0.00	34.35	3.46
1866	2017	1.632589	GTGGCACCCCTTTCATTTCT	58.367	50.000	6.29	0.00	0.00	2.52
1966	2120	7.926674	TCCGCATCATGATAATAACATCAAT	57.073	32.000	8.15	0.00	38.39	2.57
2025	2183	3.287222	CATGTGGGATTTACCGGAATGT	58.713	45.455	9.46	0.00	40.11	2.71
2049	2207	0.394488	TTGTTGTTTCCGGCCTCACA	60.394	50.000	0.00	0.00	0.00	3.58
2085	2246	9.744468	CTAAAATGTGTAGTTTACTTTTGCCTT	57.256	29.630	0.00	0.00	0.00	4.35
2091	2252	5.999600	TGTAGTTTACTTTTGCCTTACCTCC	59.000	40.000	0.00	0.00	0.00	4.30
2166	2327	8.330466	ACTAAATAATCGAATGTGGTGTTTCA	57.670	30.769	0.00	0.00	0.00	2.69
2301	2462	4.021280	TCATGCCATGTTTATGCTTGTTGT	60.021	37.500	4.31	0.00	32.79	3.32
2397	2560	5.313520	TCGTTCGACTATGTCCATTTGTA	57.686	39.130	0.00	0.00	0.00	2.41
2455	2619	2.092212	CAGGCAAGATGACCATACCCTT	60.092	50.000	0.00	0.00	0.00	3.95
2489	2653	6.467677	TCTATCTTTGCTTGCTAGTTGTTCT	58.532	36.000	0.00	0.00	0.00	3.01
2496	2660	6.775594	TGCTTGCTAGTTGTTCTCTCTATA	57.224	37.500	0.00	0.00	0.00	1.31

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
84	85	6.218108	AGAAATGGCCAAGATTGAAAGATC	57.782	37.500	10.96	0.00	0.00	2.75
113	114	5.879777	TCATAAAAATGTGCTTGATCCGAGA	59.120	36.000	0.00	0.00	0.00	4.04
142	143	5.404466	TTTGGCATGAGGTTAATTTCCTG	57.596	39.130	0.00	0.00	35.20	3.86
143	144	6.441604	AGAATTTGGCATGAGGTTAATTTCCT	59.558	34.615	0.00	2.16	38.09	3.36
170	171	4.663592	AGAAGAAAAGGAAGGTGTTAGGGA	59.336	41.667	0.00	0.00	0.00	4.20
178	179	4.417183	AGGAAAGGAGAAGAAAAGGAAGGT	59.583	41.667	0.00	0.00	0.00	3.50
219	223	8.039538	TCGAACTCTCACTACTCACTAATCTAA	58.960	37.037	0.00	0.00	0.00	2.10
335	347	0.326927	GGTGCAGGCTAGGGTTACAA	59.673	55.000	0.00	0.00	0.00	2.41
337	349	1.223763	GGGTGCAGGCTAGGGTTAC	59.776	63.158	0.00	0.00	0.00	2.50
358	374	3.083349	CGAGGGGTGAGATGGGCA	61.083	66.667	0.00	0.00	0.00	5.36
429	445	0.780637	AGAGATGGGGATCGAGGCTA	59.219	55.000	0.00	0.00	0.00	3.93
474	491	4.740822	GGCATGGGGCTTGACCGT	62.741	66.667	0.00	0.00	44.01	4.83
637	770	0.191064	ATATGAAGGAGGCGGGAGGA	59.809	55.000	0.00	0.00	0.00	3.71
655	788	2.125512	GACGTGGAGGCGCAGAAT	60.126	61.111	10.83	0.00	34.88	2.40
780	913	3.138798	GGCGAGCAGAGTACGGGA	61.139	66.667	0.00	0.00	0.00	5.14
821	954	1.673168	GATGGAGCAAGATGGTGGTC	58.327	55.000	0.00	0.00	43.73	4.02
846	980	0.621082	GGGAAGGAGAAACAGGGGAG	59.379	60.000	0.00	0.00	0.00	4.30
890	1024	4.648626	AGCAGCAAGGCTTCGGCA	62.649	61.111	18.07	0.00	42.71	5.69
926	1062	2.183811	CTCCTCCGTCAGCTGCAG	59.816	66.667	10.11	10.11	0.00	4.41
972	1108	1.229788	AGGCAGGAGGAGGCTTCTT	60.230	57.895	0.00	0.00	38.98	2.52
975	1111	2.204059	ACAGGCAGGAGGAGGCTT	60.204	61.111	0.00	0.00	40.22	4.35
984	1120	0.179026	CCATGGAGATGACAGGCAGG	60.179	60.000	5.56	0.00	0.00	4.85
1007	1143	1.447489	CAGCTTGAGTGGCTCCTCG	60.447	63.158	0.00	0.00	38.03	4.63
1018	1154	2.258591	GAGCGACCGACAGCTTGA	59.741	61.111	0.00	0.00	44.69	3.02
1095	1232	1.346365	CGCGTCCAAAATCTTCGAGA	58.654	50.000	0.00	0.00	0.00	4.04
1097	1234	1.632046	GGCGCGTCCAAAATCTTCGA	61.632	55.000	8.43	0.00	34.01	3.71
1152	1289	1.370064	GGTGCCACGGTACTTGACT	59.630	57.895	4.25	0.00	0.00	3.41
1277	1414	2.022934	GACGGTCTTATCGGAACCTCT	58.977	52.381	0.00	0.00	0.00	3.69
1325	1462	3.188048	CACGTCGGTAGTAGTTGTTCTCT	59.812	47.826	0.00	0.00	0.00	3.10
1398	1535	1.552578	ATACACACCGGCTGTAGTGA	58.447	50.000	18.25	5.72	37.43	3.41
1430	1567	4.291540	TGTAGTCGTTTGTGTCGTAGTT	57.708	40.909	0.00	0.00	0.00	2.24
1527	1666	2.306805	TGGGACGTAGAGGAAGTAGACA	59.693	50.000	0.00	0.00	0.00	3.41
1576	1718	1.682854	TCGGCGGTTATACCTTCGAAT	59.317	47.619	7.21	0.00	37.38	3.34
1608	1750	2.231964	ACAACACATGCATTCATCCACC	59.768	45.455	0.00	0.00	0.00	4.61
1652	1794	1.145156	CGGGCGGATACAACATCCA	59.855	57.895	4.29	0.00	38.08	3.41
1653	1795	1.145377	ACGGGCGGATACAACATCC	59.855	57.895	0.00	0.00	34.90	3.51
1654	1796	0.179094	TCACGGGCGGATACAACATC	60.179	55.000	0.00	0.00	0.00	3.06
1655	1797	0.250793	TTCACGGGCGGATACAACAT	59.749	50.000	0.00	0.00	0.00	2.71
1656	1798	0.671163	GTTCACGGGCGGATACAACA	60.671	55.000	0.00	0.00	0.00	3.33
1657	1799	1.689352	CGTTCACGGGCGGATACAAC	61.689	60.000	0.00	0.00	35.37	3.32
1658	1800	1.446445	CGTTCACGGGCGGATACAA	60.446	57.895	0.00	0.00	35.37	2.41
1659	1801	1.669049	ATCGTTCACGGGCGGATACA	61.669	55.000	0.00	0.00	40.29	2.29
1683	1825	2.370445	ATGGCAACCGAGGAGGGAG	61.370	63.158	0.00	0.00	46.96	4.30
1685	1827	2.124570	CATGGCAACCGAGGAGGG	60.125	66.667	0.00	0.00	46.96	4.30
1763	1909	1.187055	GTGCAAAACGAAATGTGACGC	59.813	47.619	0.00	0.00	0.00	5.19
1775	1921	1.816074	TGGAGATACGGGTGCAAAAC	58.184	50.000	0.00	0.00	0.00	2.43
1866	2017	1.199789	GAAGCATTTGTCATCGTGGCA	59.800	47.619	0.00	0.00	0.00	4.92
1930	2084	3.804786	TGATGCGGATGAAATTTGCAT	57.195	38.095	11.49	11.49	45.90	3.96
1938	2092	7.607223	TGATGTTATTATCATGATGCGGATGAA	59.393	33.333	18.72	2.87	33.59	2.57
2025	2183	3.637229	TGAGGCCGGAAACAACAAATAAA	59.363	39.130	5.05	0.00	0.00	1.40
2085	2246	6.068461	TGTTATTAAACATGGCAGGAGGTA	57.932	37.500	5.99	0.00	40.69	3.08
2131	2292	8.258007	ACATTCGATTATTTAGTTCACTCCTGA	58.742	33.333	0.00	0.00	0.00	3.86
2190	2351	7.277981	ACAATACTACAAATTAAGTGGAGCTCG	59.722	37.037	7.83	0.00	29.08	5.03
2231	2392	2.166254	CGGTTTAAAGAGGCATGGCATT	59.834	45.455	22.64	14.94	0.00	3.56
2301	2462	5.606348	AAGGAGCAAACAACATGGTAAAA	57.394	34.783	0.00	0.00	0.00	1.52
2397	2560	6.827762	GGAAGAAGAATGAGTCCATGAAGAAT	59.172	38.462	0.00	0.00	32.36	2.40
2455	2619	6.432162	AGCAAGCAAAGATAGAAGTGATTTCA	59.568	34.615	0.00	0.00	38.31	2.69
2489	2653	6.531923	AGGTAGTGCGACATAGTTATAGAGA	58.468	40.000	0.00	0.00	0.00	3.10
2496	2660	3.129988	GTGGTAGGTAGTGCGACATAGTT	59.870	47.826	0.00	0.00	0.00	2.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.