Multiple sequence alignment - TraesCS1A01G131500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G131500 chr1A 100.000 7216 0 0 1 7216 175179831 175172616 0.000000e+00 13326.0
1 TraesCS1A01G131500 chr1A 89.712 729 70 4 3653 4378 337681793 337681067 0.000000e+00 926.0
2 TraesCS1A01G131500 chr1A 82.902 193 31 2 1022 1213 563685839 563685648 9.620000e-39 172.0
3 TraesCS1A01G131500 chr1A 94.118 51 2 1 3558 3608 564392253 564392204 7.760000e-10 76.8
4 TraesCS1A01G131500 chr1B 95.939 2241 62 11 4372 6606 242241003 242238786 0.000000e+00 3607.0
5 TraesCS1A01G131500 chr1B 95.455 1056 27 10 1499 2545 242248196 242247153 0.000000e+00 1664.0
6 TraesCS1A01G131500 chr1B 95.884 656 15 4 853 1497 242248895 242248241 0.000000e+00 1051.0
7 TraesCS1A01G131500 chr1B 90.934 717 57 4 3663 4378 626580388 626579679 0.000000e+00 957.0
8 TraesCS1A01G131500 chr1B 94.080 473 15 6 3128 3599 242241549 242241089 0.000000e+00 706.0
9 TraesCS1A01G131500 chr1B 95.413 327 7 1 2814 3132 242246662 242246336 1.390000e-141 514.0
10 TraesCS1A01G131500 chr1B 94.853 136 6 1 2529 2663 242247139 242247004 2.040000e-50 211.0
11 TraesCS1A01G131500 chr1B 81.863 204 34 3 1022 1224 652458915 652458714 1.240000e-37 169.0
12 TraesCS1A01G131500 chr1B 95.192 104 5 0 2711 2814 242246804 242246701 1.610000e-36 165.0
13 TraesCS1A01G131500 chr1B 97.674 86 2 0 3563 3648 242241086 242241001 1.620000e-31 148.0
14 TraesCS1A01G131500 chr1B 96.000 75 3 0 7028 7102 242238794 242238720 9.830000e-24 122.0
15 TraesCS1A01G131500 chr1B 86.000 100 4 4 3509 3608 242241089 242241178 1.660000e-16 99.0
16 TraesCS1A01G131500 chr1B 82.407 108 9 1 3500 3607 254461083 254461180 1.290000e-12 86.1
17 TraesCS1A01G131500 chr1B 97.619 42 1 0 3567 3608 282135824 282135783 1.000000e-08 73.1
18 TraesCS1A01G131500 chr1D 96.354 1975 52 8 849 2814 184470718 184472681 0.000000e+00 3230.0
19 TraesCS1A01G131500 chr1D 96.176 1203 30 6 4377 5569 184473499 184474695 0.000000e+00 1953.0
20 TraesCS1A01G131500 chr1D 96.346 1040 21 7 5571 6606 184474859 184475885 0.000000e+00 1694.0
21 TraesCS1A01G131500 chr1D 96.188 682 19 3 2814 3494 184472720 184473395 0.000000e+00 1109.0
22 TraesCS1A01G131500 chr1D 82.653 196 32 2 1022 1216 470076674 470076480 9.620000e-39 172.0
23 TraesCS1A01G131500 chr1D 97.701 87 2 0 3563 3649 184473412 184473498 4.510000e-32 150.0
24 TraesCS1A01G131500 chr1D 95.588 68 3 0 7035 7102 184477637 184477704 7.650000e-20 110.0
25 TraesCS1A01G131500 chr3B 94.125 851 46 3 1 849 545382877 545382029 0.000000e+00 1291.0
26 TraesCS1A01G131500 chr3B 92.147 624 45 3 227 848 525618294 525618915 0.000000e+00 878.0
27 TraesCS1A01G131500 chr2D 92.028 853 52 6 1 849 32777027 32777867 0.000000e+00 1184.0
28 TraesCS1A01G131500 chr2D 92.254 426 30 3 6605 7028 204144991 204145415 1.040000e-167 601.0
29 TraesCS1A01G131500 chr2D 78.846 156 29 3 697 850 56581132 56581285 1.280000e-17 102.0
30 TraesCS1A01G131500 chr2D 83.962 106 7 4 3502 3607 535105664 535105569 7.710000e-15 93.5
31 TraesCS1A01G131500 chr5A 93.388 726 45 2 3653 4376 1386477 1387201 0.000000e+00 1072.0
32 TraesCS1A01G131500 chr5A 92.235 425 30 3 6606 7028 54462389 54461966 3.730000e-167 599.0
33 TraesCS1A01G131500 chr5A 86.538 208 27 1 1010 1216 370192189 370191982 2.030000e-55 228.0
34 TraesCS1A01G131500 chr5A 92.982 57 3 1 3551 3607 707806523 707806578 1.670000e-11 82.4
35 TraesCS1A01G131500 chr7D 88.863 871 69 15 1 850 217966980 217967843 0.000000e+00 1046.0
36 TraesCS1A01G131500 chr7D 88.812 867 73 12 1 848 620262777 620261916 0.000000e+00 1042.0
37 TraesCS1A01G131500 chr6D 92.109 735 55 3 3647 4378 430012559 430011825 0.000000e+00 1033.0
38 TraesCS1A01G131500 chr6D 91.907 729 56 3 3652 4378 156559812 156559085 0.000000e+00 1016.0
39 TraesCS1A01G131500 chr3A 91.701 735 56 5 3648 4378 731741464 731742197 0.000000e+00 1014.0
40 TraesCS1A01G131500 chr3A 92.435 423 28 4 6608 7027 603273136 603273557 1.040000e-167 601.0
41 TraesCS1A01G131500 chr3A 84.615 117 10 3 3501 3617 195460581 195460689 7.650000e-20 110.0
42 TraesCS1A01G131500 chr6B 87.903 868 83 10 1 848 36218393 36219258 0.000000e+00 1002.0
43 TraesCS1A01G131500 chr6B 86.766 869 84 16 4 848 661555054 661555915 0.000000e+00 939.0
44 TraesCS1A01G131500 chr3D 90.723 733 63 5 3648 4378 600858174 600857445 0.000000e+00 972.0
45 TraesCS1A01G131500 chr3D 80.672 119 23 0 730 848 37280346 37280228 7.710000e-15 93.5
46 TraesCS1A01G131500 chr3D 95.652 46 2 0 3566 3611 460420177 460420222 2.790000e-09 75.0
47 TraesCS1A01G131500 chr5D 90.424 731 67 3 3650 4378 55834566 55833837 0.000000e+00 959.0
48 TraesCS1A01G131500 chr5D 85.854 205 28 1 1010 1213 278310590 278310794 4.380000e-52 217.0
49 TraesCS1A01G131500 chr5D 81.771 192 35 0 1022 1213 413698368 413698559 2.080000e-35 161.0
50 TraesCS1A01G131500 chr4D 89.538 736 65 11 3649 4378 215464460 215465189 0.000000e+00 922.0
51 TraesCS1A01G131500 chr4D 92.982 57 4 0 3551 3607 37052111 37052055 4.640000e-12 84.2
52 TraesCS1A01G131500 chr7A 85.731 869 92 19 5 848 190019109 190019970 0.000000e+00 889.0
53 TraesCS1A01G131500 chr7A 92.671 423 28 3 6606 7026 663965459 663965038 2.230000e-169 606.0
54 TraesCS1A01G131500 chr7A 92.435 423 28 4 6608 7028 690045409 690045829 1.040000e-167 601.0
55 TraesCS1A01G131500 chr7A 91.176 442 30 8 6603 7040 40794882 40794446 6.230000e-165 592.0
56 TraesCS1A01G131500 chr7A 91.379 58 4 1 3551 3608 42983285 42983229 2.160000e-10 78.7
57 TraesCS1A01G131500 chr2A 85.253 868 96 18 5 848 707795383 707794524 0.000000e+00 865.0
58 TraesCS1A01G131500 chr2A 92.654 422 28 3 6608 7027 194475515 194475095 8.010000e-169 604.0
59 TraesCS1A01G131500 chrUn 96.378 497 14 1 1 497 335951817 335951325 0.000000e+00 815.0
60 TraesCS1A01G131500 chrUn 96.378 497 14 1 1 497 467761358 467761850 0.000000e+00 815.0
61 TraesCS1A01G131500 chr5B 92.453 424 28 4 6607 7027 82463633 82464055 2.880000e-168 603.0
62 TraesCS1A01G131500 chr5B 85.854 205 28 1 1010 1213 316378413 316378617 4.380000e-52 217.0
63 TraesCS1A01G131500 chr7B 92.235 425 29 4 6608 7030 524714645 524714223 3.730000e-167 599.0
64 TraesCS1A01G131500 chr2B 95.745 47 2 0 3563 3609 148242238 148242192 7.760000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G131500 chr1A 175172616 175179831 7215 True 13326.000000 13326 100.000000 1 7216 1 chr1A.!!$R1 7215
1 TraesCS1A01G131500 chr1A 337681067 337681793 726 True 926.000000 926 89.712000 3653 4378 1 chr1A.!!$R2 725
2 TraesCS1A01G131500 chr1B 242238720 242241549 2829 True 1145.750000 3607 95.923250 3128 7102 4 chr1B.!!$R4 3974
3 TraesCS1A01G131500 chr1B 626579679 626580388 709 True 957.000000 957 90.934000 3663 4378 1 chr1B.!!$R2 715
4 TraesCS1A01G131500 chr1B 242246336 242248895 2559 True 721.000000 1664 95.359400 853 3132 5 chr1B.!!$R5 2279
5 TraesCS1A01G131500 chr1D 184470718 184477704 6986 False 1374.333333 3230 96.392167 849 7102 6 chr1D.!!$F1 6253
6 TraesCS1A01G131500 chr3B 545382029 545382877 848 True 1291.000000 1291 94.125000 1 849 1 chr3B.!!$R1 848
7 TraesCS1A01G131500 chr3B 525618294 525618915 621 False 878.000000 878 92.147000 227 848 1 chr3B.!!$F1 621
8 TraesCS1A01G131500 chr2D 32777027 32777867 840 False 1184.000000 1184 92.028000 1 849 1 chr2D.!!$F1 848
9 TraesCS1A01G131500 chr5A 1386477 1387201 724 False 1072.000000 1072 93.388000 3653 4376 1 chr5A.!!$F1 723
10 TraesCS1A01G131500 chr7D 217966980 217967843 863 False 1046.000000 1046 88.863000 1 850 1 chr7D.!!$F1 849
11 TraesCS1A01G131500 chr7D 620261916 620262777 861 True 1042.000000 1042 88.812000 1 848 1 chr7D.!!$R1 847
12 TraesCS1A01G131500 chr6D 430011825 430012559 734 True 1033.000000 1033 92.109000 3647 4378 1 chr6D.!!$R2 731
13 TraesCS1A01G131500 chr6D 156559085 156559812 727 True 1016.000000 1016 91.907000 3652 4378 1 chr6D.!!$R1 726
14 TraesCS1A01G131500 chr3A 731741464 731742197 733 False 1014.000000 1014 91.701000 3648 4378 1 chr3A.!!$F3 730
15 TraesCS1A01G131500 chr6B 36218393 36219258 865 False 1002.000000 1002 87.903000 1 848 1 chr6B.!!$F1 847
16 TraesCS1A01G131500 chr6B 661555054 661555915 861 False 939.000000 939 86.766000 4 848 1 chr6B.!!$F2 844
17 TraesCS1A01G131500 chr3D 600857445 600858174 729 True 972.000000 972 90.723000 3648 4378 1 chr3D.!!$R2 730
18 TraesCS1A01G131500 chr5D 55833837 55834566 729 True 959.000000 959 90.424000 3650 4378 1 chr5D.!!$R1 728
19 TraesCS1A01G131500 chr4D 215464460 215465189 729 False 922.000000 922 89.538000 3649 4378 1 chr4D.!!$F1 729
20 TraesCS1A01G131500 chr7A 190019109 190019970 861 False 889.000000 889 85.731000 5 848 1 chr7A.!!$F1 843
21 TraesCS1A01G131500 chr2A 707794524 707795383 859 True 865.000000 865 85.253000 5 848 1 chr2A.!!$R2 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 943 1.154599 CAAACTACACGCAGCGCTG 60.155 57.895 32.83 32.83 0.00 5.18 F
1614 1703 1.141657 TGCTTGAGCTTGAAGTCTGGT 59.858 47.619 4.44 0.00 42.66 4.00 F
2545 2674 0.248621 GTGTGCAACCAGTTGACAGC 60.249 55.000 14.56 0.00 42.93 4.40 F
3456 3792 1.808512 CGCCATCTAATTACGTGGGCA 60.809 52.381 0.00 0.00 39.87 5.36 F
3842 4212 1.941812 GCCACATCCGGCGATAAAG 59.058 57.895 9.30 0.00 43.52 1.85 F
3964 4335 2.445525 ACCAAAAGCTCCCTAAAGTCCA 59.554 45.455 0.00 0.00 0.00 4.02 F
5034 5418 2.586425 ACAAGCTGGTGCACTTAACAT 58.414 42.857 17.98 0.00 42.74 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2343 3.141398 CAACTTTGCTGCTCCTGTCTAA 58.859 45.455 0.00 0.0 0.00 2.10 R
3244 3578 0.597568 CGCACATTCTTGGAAGCCAA 59.402 50.000 0.00 0.0 41.69 4.52 R
3853 4223 1.584724 AGGCTAGGTGTGTAGGCATT 58.415 50.000 7.15 0.0 45.79 3.56 R
4559 4940 0.247185 ATCATGCCCCTGTTTTTGCG 59.753 50.000 0.00 0.0 0.00 4.85 R
5772 6318 0.734253 GTGACAGCTCTGTACCTGCG 60.734 60.000 2.07 0.0 45.05 5.18 R
5891 6437 3.665745 ATGTTTTTGTCTGCATGACCC 57.334 42.857 11.99 0.0 44.75 4.46 R
6627 7176 0.106015 AATAGGGCTCCAATGCACCC 60.106 55.000 0.00 0.0 43.17 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
424 450 6.647067 GCCAGGTTAGTACATATAGCTTTCTG 59.353 42.308 0.00 0.00 0.00 3.02
595 622 1.234615 AAATTGCCACTCCCACGTCG 61.235 55.000 0.00 0.00 0.00 5.12
602 629 4.436998 CTCCCACGTCGACAGGGC 62.437 72.222 29.35 0.00 42.52 5.19
665 699 2.750350 CCACGCACCCCTTCTCTT 59.250 61.111 0.00 0.00 0.00 2.85
703 737 2.662070 GGGCCCCACACGCTTAGTA 61.662 63.158 12.23 0.00 0.00 1.82
769 803 9.900710 TGTACGTTAATATCAAATTTTTGCACT 57.099 25.926 0.00 0.00 38.05 4.40
786 820 6.735678 TTGCACTATTTCAATGTACGTCAT 57.264 33.333 0.00 0.00 38.57 3.06
817 851 8.500753 TTATCATCAAAGTAACCATTTACGCT 57.499 30.769 0.00 0.00 42.28 5.07
825 859 6.476243 AGTAACCATTTACGCTAAGTTGTG 57.524 37.500 0.00 0.00 42.28 3.33
906 943 1.154599 CAAACTACACGCAGCGCTG 60.155 57.895 32.83 32.83 0.00 5.18
935 972 2.050269 CACTTCACCTCCACGACCT 58.950 57.895 0.00 0.00 0.00 3.85
1366 1410 2.035961 TGAGCTAACACAGTTCGCTCTT 59.964 45.455 26.14 3.15 45.39 2.85
1369 1413 2.096713 GCTAACACAGTTCGCTCTTGTG 60.097 50.000 2.58 2.58 36.65 3.33
1403 1447 8.362639 TCAGACTAGTCCGTAATTTTTGTTACT 58.637 33.333 19.38 0.00 33.44 2.24
1469 1513 7.096884 TGTCTTGGTCACTATAGATGTACAC 57.903 40.000 6.78 0.00 0.00 2.90
1471 1515 6.096423 GTCTTGGTCACTATAGATGTACACCA 59.904 42.308 6.78 8.13 31.57 4.17
1497 1542 3.809918 TCGTACGGTTGTTAAAATGGC 57.190 42.857 16.52 0.00 0.00 4.40
1614 1703 1.141657 TGCTTGAGCTTGAAGTCTGGT 59.858 47.619 4.44 0.00 42.66 4.00
1632 1721 3.259064 TGGTCGCTAAGATTAAGTGTGC 58.741 45.455 0.00 0.00 0.00 4.57
1656 1745 6.125029 CCTTGTTAGTTGGATTGATGGAGAT 58.875 40.000 0.00 0.00 0.00 2.75
1669 1758 8.566260 GGATTGATGGAGATGAGATTTTGTAAG 58.434 37.037 0.00 0.00 0.00 2.34
1675 1764 4.832248 AGATGAGATTTTGTAAGCACGGA 58.168 39.130 0.00 0.00 0.00 4.69
1851 1949 7.949565 TGGGTGATGAATATATTTGGCATTAGT 59.050 33.333 0.00 0.00 0.00 2.24
1965 2063 9.453830 AAGAAAGTATTCCCCTATTATCTCTGT 57.546 33.333 0.00 0.00 36.12 3.41
2016 2115 8.370182 AGATTATTTCACTTTTGAGGTGCAAAT 58.630 29.630 0.00 0.00 45.30 2.32
2096 2195 5.237344 AGTTTGTTGATGGAAAAGAGTCTCG 59.763 40.000 0.00 0.00 0.00 4.04
2126 2225 3.634910 TCATGGCATGTGAATCCTCATTG 59.365 43.478 25.62 0.00 33.05 2.82
2405 2504 2.683465 ATGCCACGCTCATTCCCCT 61.683 57.895 0.00 0.00 0.00 4.79
2407 2506 3.036429 GCCACGCTCATTCCCCTCT 62.036 63.158 0.00 0.00 0.00 3.69
2545 2674 0.248621 GTGTGCAACCAGTTGACAGC 60.249 55.000 14.56 0.00 42.93 4.40
3209 3543 7.172019 GGTACTTATGGGTTCGTAAACATATGG 59.828 40.741 7.80 0.00 37.10 2.74
3231 3565 4.222810 GGCTTTCACATATTTTCACCCCTT 59.777 41.667 0.00 0.00 0.00 3.95
3244 3578 6.800072 TTTCACCCCTTGTTTGAAAGTATT 57.200 33.333 0.00 0.00 34.96 1.89
3456 3792 1.808512 CGCCATCTAATTACGTGGGCA 60.809 52.381 0.00 0.00 39.87 5.36
3460 3796 3.181465 CCATCTAATTACGTGGGCAGAGT 60.181 47.826 0.00 0.00 0.00 3.24
3548 3884 5.548706 CGTAGCTCTAGTACAACTTCAGT 57.451 43.478 0.00 0.00 0.00 3.41
3549 3885 6.659361 CGTAGCTCTAGTACAACTTCAGTA 57.341 41.667 0.00 0.00 0.00 2.74
3550 3886 6.476896 CGTAGCTCTAGTACAACTTCAGTAC 58.523 44.000 0.00 0.00 41.59 2.73
3556 3892 8.295288 GCTCTAGTACAACTTCAGTACAAAGTA 58.705 37.037 12.43 0.00 43.24 2.24
3599 3964 3.066064 TGCGACAATTAATTTGGATCGGG 59.934 43.478 16.50 1.48 39.80 5.14
3805 4172 2.159382 CTAAAAAGTGCCACATCCGGT 58.841 47.619 0.00 0.00 0.00 5.28
3842 4212 1.941812 GCCACATCCGGCGATAAAG 59.058 57.895 9.30 0.00 43.52 1.85
3853 4223 2.927477 CGGCGATAAAGAACAAGCTACA 59.073 45.455 0.00 0.00 0.00 2.74
3964 4335 2.445525 ACCAAAAGCTCCCTAAAGTCCA 59.554 45.455 0.00 0.00 0.00 4.02
3988 4359 5.127194 ACATGAGTGAGTAACGACCACATAT 59.873 40.000 0.00 0.00 32.33 1.78
4468 4849 8.068380 CAGTTTGACATGTCTAGCAATATGATG 58.932 37.037 25.55 9.50 0.00 3.07
4542 4923 6.543831 GGCTGACTGATAATAACCTTGAATGT 59.456 38.462 0.00 0.00 0.00 2.71
4559 4940 7.661847 CCTTGAATGTATGGGTAGGAGAAATAC 59.338 40.741 0.00 0.00 0.00 1.89
4911 5295 2.644299 TGGGTGGACACAGAAAGATCAT 59.356 45.455 4.69 0.00 0.00 2.45
4938 5322 6.158344 AGGCTCAAGTAGGAGAGTAGTTAGTA 59.842 42.308 0.00 0.00 37.05 1.82
5034 5418 2.586425 ACAAGCTGGTGCACTTAACAT 58.414 42.857 17.98 0.00 42.74 2.71
5292 5676 5.469479 CCAAAATTGGGCAACTACTTGTAG 58.531 41.667 4.18 6.28 44.70 2.74
5320 5704 2.957402 TTGGGTGTTCTCAGATGCTT 57.043 45.000 0.00 0.00 0.00 3.91
5494 5878 5.070313 TGGCTGCTTTTACTTTTTCCATCTT 59.930 36.000 0.00 0.00 0.00 2.40
5495 5879 6.266558 TGGCTGCTTTTACTTTTTCCATCTTA 59.733 34.615 0.00 0.00 0.00 2.10
5554 5938 2.981859 ATAGGTTGCGTCCTACAAGG 57.018 50.000 8.55 0.00 42.02 3.61
5569 5953 6.324254 GTCCTACAAGGTCTATAGTTGGATGT 59.676 42.308 0.00 3.49 37.98 3.06
5706 6252 6.812160 CGTGAAGCTTTAGTGTCCTACTATTT 59.188 38.462 0.00 0.00 41.36 1.40
5769 6315 3.979948 TCACATGCTGGTTGTTTCAATG 58.020 40.909 0.00 0.00 0.00 2.82
5772 6318 3.243839 ACATGCTGGTTGTTTCAATGACC 60.244 43.478 0.00 0.00 0.00 4.02
5990 6536 2.165998 GAGGATGCCAAAGAGTTTGCT 58.834 47.619 0.00 0.00 39.31 3.91
6107 6653 4.713553 TCCACAGCAAGAAGAACATTGTA 58.286 39.130 0.00 0.00 0.00 2.41
6216 6762 5.808042 CAAGTGCTGCAGTTCTATGTAAT 57.192 39.130 19.27 0.00 0.00 1.89
6217 6763 5.804173 CAAGTGCTGCAGTTCTATGTAATC 58.196 41.667 19.27 0.00 0.00 1.75
6257 6803 5.167121 TGTTGGATTTGTGTGTGTTTTGAG 58.833 37.500 0.00 0.00 0.00 3.02
6258 6804 5.047731 TGTTGGATTTGTGTGTGTTTTGAGA 60.048 36.000 0.00 0.00 0.00 3.27
6259 6805 5.651387 TGGATTTGTGTGTGTTTTGAGAA 57.349 34.783 0.00 0.00 0.00 2.87
6260 6806 6.219417 TGGATTTGTGTGTGTTTTGAGAAT 57.781 33.333 0.00 0.00 0.00 2.40
6261 6807 7.340122 TGGATTTGTGTGTGTTTTGAGAATA 57.660 32.000 0.00 0.00 0.00 1.75
6407 6953 3.431486 GGTTAGGGAGTGAGCAGATGAAG 60.431 52.174 0.00 0.00 0.00 3.02
6549 7098 2.074547 CGTTGCTACGGGAGAAGAAA 57.925 50.000 13.04 0.00 43.94 2.52
6606 7155 2.871096 TGGGACGGAGCTTACAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
6607 7156 2.706890 TGGGACGGAGCTTACAAAATC 58.293 47.619 0.00 0.00 0.00 2.17
6608 7157 2.039216 TGGGACGGAGCTTACAAAATCA 59.961 45.455 0.00 0.00 0.00 2.57
6609 7158 3.078837 GGGACGGAGCTTACAAAATCAA 58.921 45.455 0.00 0.00 0.00 2.57
6610 7159 3.504520 GGGACGGAGCTTACAAAATCAAA 59.495 43.478 0.00 0.00 0.00 2.69
6611 7160 4.022676 GGGACGGAGCTTACAAAATCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
6613 7162 5.629435 GGACGGAGCTTACAAAATCAAAAAG 59.371 40.000 0.00 0.00 0.00 2.27
6614 7163 6.144078 ACGGAGCTTACAAAATCAAAAAGT 57.856 33.333 0.00 0.00 0.00 2.66
6615 7164 6.206498 ACGGAGCTTACAAAATCAAAAAGTC 58.794 36.000 0.00 0.00 0.00 3.01
6616 7165 6.183360 ACGGAGCTTACAAAATCAAAAAGTCA 60.183 34.615 0.00 0.00 0.00 3.41
6617 7166 6.142320 CGGAGCTTACAAAATCAAAAAGTCAC 59.858 38.462 0.00 0.00 0.00 3.67
6618 7167 7.203218 GGAGCTTACAAAATCAAAAAGTCACT 58.797 34.615 0.00 0.00 0.00 3.41
6620 7169 8.634475 AGCTTACAAAATCAAAAAGTCACTTC 57.366 30.769 0.00 0.00 0.00 3.01
6621 7170 7.432252 AGCTTACAAAATCAAAAAGTCACTTCG 59.568 33.333 0.00 0.00 0.00 3.79
6622 7171 7.431084 GCTTACAAAATCAAAAAGTCACTTCGA 59.569 33.333 0.00 0.00 0.00 3.71
6623 7172 9.284594 CTTACAAAATCAAAAAGTCACTTCGAA 57.715 29.630 0.00 0.00 0.00 3.71
6624 7173 7.506296 ACAAAATCAAAAAGTCACTTCGAAC 57.494 32.000 0.00 0.00 0.00 3.95
6625 7174 6.530181 ACAAAATCAAAAAGTCACTTCGAACC 59.470 34.615 0.00 0.00 0.00 3.62
6627 7176 2.610374 TCAAAAAGTCACTTCGAACCCG 59.390 45.455 0.00 0.00 37.07 5.28
6629 7178 0.250166 AAAGTCACTTCGAACCCGGG 60.250 55.000 22.25 22.25 36.24 5.73
6630 7179 1.405272 AAGTCACTTCGAACCCGGGT 61.405 55.000 24.16 24.16 36.24 5.28
6631 7180 1.666872 GTCACTTCGAACCCGGGTG 60.667 63.158 31.05 16.85 39.36 4.61
6633 7182 3.552384 ACTTCGAACCCGGGTGCA 61.552 61.111 31.63 15.71 36.24 4.57
6634 7183 2.046314 CTTCGAACCCGGGTGCAT 60.046 61.111 31.63 15.06 36.24 3.96
6635 7184 1.674322 CTTCGAACCCGGGTGCATT 60.674 57.895 31.63 14.63 36.24 3.56
6638 7187 2.034999 GAACCCGGGTGCATTGGA 59.965 61.111 31.05 0.00 0.00 3.53
6639 7188 2.035626 AACCCGGGTGCATTGGAG 59.964 61.111 31.05 0.00 0.00 3.86
6640 7189 4.740822 ACCCGGGTGCATTGGAGC 62.741 66.667 29.69 0.00 0.00 4.70
6643 7192 4.431131 CGGGTGCATTGGAGCCCT 62.431 66.667 19.11 0.00 38.97 5.19
6644 7193 3.006677 GGGTGCATTGGAGCCCTA 58.993 61.111 14.84 0.00 38.12 3.53
6646 7195 0.106015 GGGTGCATTGGAGCCCTATT 60.106 55.000 14.84 0.00 38.12 1.73
6647 7196 1.689258 GGGTGCATTGGAGCCCTATTT 60.689 52.381 14.84 0.00 38.12 1.40
6648 7197 2.110578 GGTGCATTGGAGCCCTATTTT 58.889 47.619 0.00 0.00 0.00 1.82
6670 7219 7.856145 TTTTTGAACTGTGCCAAAATGTTAT 57.144 28.000 16.64 0.00 40.55 1.89
6671 7220 7.856145 TTTTGAACTGTGCCAAAATGTTATT 57.144 28.000 13.72 0.00 37.35 1.40
6672 7221 7.856145 TTTGAACTGTGCCAAAATGTTATTT 57.144 28.000 6.26 0.00 30.29 1.40
6673 7222 7.856145 TTGAACTGTGCCAAAATGTTATTTT 57.144 28.000 0.00 0.00 0.00 1.82
6675 7224 8.948631 TGAACTGTGCCAAAATGTTATTTTAA 57.051 26.923 0.00 0.00 0.00 1.52
6676 7225 9.383519 TGAACTGTGCCAAAATGTTATTTTAAA 57.616 25.926 0.00 0.00 0.00 1.52
6678 7227 8.956533 ACTGTGCCAAAATGTTATTTTAAAGT 57.043 26.923 0.00 0.00 0.00 2.66
6679 7228 9.389755 ACTGTGCCAAAATGTTATTTTAAAGTT 57.610 25.926 0.00 0.00 0.00 2.66
6698 7247 9.765795 TTAAAGTTTCAAAAAGTTCTGGAAACA 57.234 25.926 11.02 0.00 45.90 2.83
6699 7248 8.669946 AAAGTTTCAAAAAGTTCTGGAAACAA 57.330 26.923 11.02 0.00 45.90 2.83
6700 7249 8.669946 AAGTTTCAAAAAGTTCTGGAAACAAA 57.330 26.923 11.02 0.00 45.90 2.83
6701 7250 8.846943 AGTTTCAAAAAGTTCTGGAAACAAAT 57.153 26.923 11.02 0.00 45.90 2.32
6705 7254 8.250538 TCAAAAAGTTCTGGAAACAAATCAAC 57.749 30.769 0.00 0.00 42.06 3.18
6707 7256 8.667463 CAAAAAGTTCTGGAAACAAATCAACAT 58.333 29.630 0.00 0.00 42.06 2.71
6708 7257 7.775397 AAAGTTCTGGAAACAAATCAACATG 57.225 32.000 0.00 0.00 42.06 3.21
6709 7258 6.469782 AGTTCTGGAAACAAATCAACATGT 57.530 33.333 0.00 0.00 42.06 3.21
6710 7259 6.877236 AGTTCTGGAAACAAATCAACATGTT 58.123 32.000 4.92 4.92 42.06 2.71
6713 7262 9.260002 GTTCTGGAAACAAATCAACATGTTTAT 57.740 29.630 8.77 3.55 46.60 1.40
6767 7316 9.853555 TTTGATGCTAAAATAAGTAACCATGTG 57.146 29.630 0.00 0.00 0.00 3.21
6768 7317 8.800370 TGATGCTAAAATAAGTAACCATGTGA 57.200 30.769 0.00 0.00 0.00 3.58
6769 7318 9.237187 TGATGCTAAAATAAGTAACCATGTGAA 57.763 29.630 0.00 0.00 0.00 3.18
6772 7321 9.853555 TGCTAAAATAAGTAACCATGTGAATTG 57.146 29.630 0.00 0.00 0.00 2.32
6774 7323 9.853555 CTAAAATAAGTAACCATGTGAATTGCA 57.146 29.630 0.00 0.00 0.00 4.08
6790 7339 8.260433 GTGAATTGCACAAAAATGACAAAATC 57.740 30.769 0.00 0.00 46.91 2.17
6791 7340 7.110490 GTGAATTGCACAAAAATGACAAAATCG 59.890 33.333 0.00 0.00 46.91 3.34
6792 7341 6.601741 ATTGCACAAAAATGACAAAATCGT 57.398 29.167 0.00 0.00 0.00 3.73
6794 7343 5.105063 TGCACAAAAATGACAAAATCGTGA 58.895 33.333 0.00 0.00 0.00 4.35
6795 7344 5.752472 TGCACAAAAATGACAAAATCGTGAT 59.248 32.000 0.00 0.00 0.00 3.06
6796 7345 6.257411 TGCACAAAAATGACAAAATCGTGATT 59.743 30.769 0.00 0.00 0.00 2.57
6797 7346 7.125113 GCACAAAAATGACAAAATCGTGATTT 58.875 30.769 2.04 2.04 42.35 2.17
6811 7360 8.870160 AAATCGTGATTTTGAAAAGATGAACA 57.130 26.923 2.04 0.00 37.74 3.18
6812 7361 8.511465 AATCGTGATTTTGAAAAGATGAACAG 57.489 30.769 0.00 0.00 0.00 3.16
6813 7362 7.026631 TCGTGATTTTGAAAAGATGAACAGT 57.973 32.000 0.00 0.00 0.00 3.55
6814 7363 6.912051 TCGTGATTTTGAAAAGATGAACAGTG 59.088 34.615 0.00 0.00 0.00 3.66
6816 7365 6.476380 GTGATTTTGAAAAGATGAACAGTGCA 59.524 34.615 0.00 0.00 0.00 4.57
6817 7366 7.170320 GTGATTTTGAAAAGATGAACAGTGCAT 59.830 33.333 0.00 0.00 0.00 3.96
6818 7367 6.831727 TTTTGAAAAGATGAACAGTGCATG 57.168 33.333 0.00 0.00 0.00 4.06
6820 7369 3.318557 TGAAAAGATGAACAGTGCATGCA 59.681 39.130 18.46 18.46 0.00 3.96
6821 7370 4.021807 TGAAAAGATGAACAGTGCATGCAT 60.022 37.500 25.64 7.59 0.00 3.96
6822 7371 4.530710 AAAGATGAACAGTGCATGCATT 57.469 36.364 25.64 18.02 0.00 3.56
6823 7372 5.648178 AAAGATGAACAGTGCATGCATTA 57.352 34.783 25.64 4.62 0.00 1.90
6824 7373 5.847111 AAGATGAACAGTGCATGCATTAT 57.153 34.783 25.64 5.73 0.00 1.28
6825 7374 5.847111 AGATGAACAGTGCATGCATTATT 57.153 34.783 25.64 15.96 0.00 1.40
6828 7377 5.585820 TGAACAGTGCATGCATTATTCAT 57.414 34.783 27.00 10.54 0.00 2.57
6829 7378 5.968254 TGAACAGTGCATGCATTATTCATT 58.032 33.333 27.00 14.16 0.00 2.57
6831 7380 7.718525 TGAACAGTGCATGCATTATTCATTAT 58.281 30.769 27.00 6.59 0.00 1.28
6832 7381 8.198778 TGAACAGTGCATGCATTATTCATTATT 58.801 29.630 27.00 10.21 0.00 1.40
6833 7382 8.951787 AACAGTGCATGCATTATTCATTATTT 57.048 26.923 25.64 1.76 0.00 1.40
6836 7385 7.654116 CAGTGCATGCATTATTCATTATTTGGA 59.346 33.333 25.64 0.00 0.00 3.53
6838 7387 8.828644 GTGCATGCATTATTCATTATTTGGAAA 58.171 29.630 25.64 0.00 0.00 3.13
6839 7388 9.562408 TGCATGCATTATTCATTATTTGGAAAT 57.438 25.926 18.46 0.00 0.00 2.17
6859 7408 9.829507 TGGAAATCACTATTTTGTCATTTTTGT 57.170 25.926 0.00 0.00 35.41 2.83
6870 7419 9.723601 ATTTTGTCATTTTTGTATAGGTTGCAT 57.276 25.926 0.00 0.00 0.00 3.96
6887 7436 8.445275 AGGTTGCATATTTACGTATTTCATCA 57.555 30.769 0.00 0.00 0.00 3.07
6888 7437 8.342634 AGGTTGCATATTTACGTATTTCATCAC 58.657 33.333 0.00 0.00 0.00 3.06
6889 7438 7.589954 GGTTGCATATTTACGTATTTCATCACC 59.410 37.037 0.00 0.00 0.00 4.02
6891 7440 8.214721 TGCATATTTACGTATTTCATCACCAA 57.785 30.769 0.00 0.00 0.00 3.67
6898 7447 9.881529 TTTACGTATTTCATCACCAAACTTTAC 57.118 29.630 0.00 0.00 0.00 2.01
6899 7448 7.499321 ACGTATTTCATCACCAAACTTTACA 57.501 32.000 0.00 0.00 0.00 2.41
6900 7449 7.357303 ACGTATTTCATCACCAAACTTTACAC 58.643 34.615 0.00 0.00 0.00 2.90
6901 7450 7.012515 ACGTATTTCATCACCAAACTTTACACA 59.987 33.333 0.00 0.00 0.00 3.72
6902 7451 8.020819 CGTATTTCATCACCAAACTTTACACAT 58.979 33.333 0.00 0.00 0.00 3.21
6903 7452 9.128107 GTATTTCATCACCAAACTTTACACATG 57.872 33.333 0.00 0.00 0.00 3.21
6904 7453 6.707440 TTCATCACCAAACTTTACACATGT 57.293 33.333 0.00 0.00 0.00 3.21
6906 7455 5.592282 TCATCACCAAACTTTACACATGTGT 59.408 36.000 32.47 32.47 46.87 3.72
6907 7456 6.768381 TCATCACCAAACTTTACACATGTGTA 59.232 34.615 30.31 30.31 44.42 2.90
6922 7471 8.837788 ACACATGTGTAAGATACATCCATATG 57.162 34.615 29.66 0.00 42.90 1.78
6923 7472 8.650490 ACACATGTGTAAGATACATCCATATGA 58.350 33.333 29.66 0.00 42.90 2.15
6924 7473 9.662947 CACATGTGTAAGATACATCCATATGAT 57.337 33.333 18.03 0.00 41.34 2.45
6925 7474 9.881649 ACATGTGTAAGATACATCCATATGATC 57.118 33.333 3.65 0.00 41.34 2.92
6926 7475 9.880157 CATGTGTAAGATACATCCATATGATCA 57.120 33.333 3.65 0.00 41.34 2.92
6927 7476 9.881649 ATGTGTAAGATACATCCATATGATCAC 57.118 33.333 3.65 0.00 41.34 3.06
6928 7477 8.028938 TGTGTAAGATACATCCATATGATCACG 58.971 37.037 3.65 0.00 41.34 4.35
6929 7478 8.029522 GTGTAAGATACATCCATATGATCACGT 58.970 37.037 3.65 0.00 41.34 4.49
6931 7480 9.723447 GTAAGATACATCCATATGATCACGTAG 57.277 37.037 3.65 0.00 36.54 3.51
6932 7481 8.581253 AAGATACATCCATATGATCACGTAGA 57.419 34.615 3.65 0.00 36.54 2.59
6934 7483 9.194972 AGATACATCCATATGATCACGTAGAAT 57.805 33.333 3.65 0.00 36.54 2.40
6935 7484 9.809096 GATACATCCATATGATCACGTAGAATT 57.191 33.333 3.65 0.00 36.54 2.17
6937 7486 8.908786 ACATCCATATGATCACGTAGAATTTT 57.091 30.769 3.65 0.00 36.54 1.82
6938 7487 9.342308 ACATCCATATGATCACGTAGAATTTTT 57.658 29.630 3.65 0.00 36.54 1.94
6977 7526 9.898152 TGAAACCTTAAATTGGATTTTCAAAGT 57.102 25.926 0.00 0.00 31.23 2.66
7006 7555 7.568199 AAAATAAGGTTCTCCAATACATCCG 57.432 36.000 0.00 0.00 35.89 4.18
7007 7556 3.560636 AAGGTTCTCCAATACATCCGG 57.439 47.619 0.00 0.00 35.89 5.14
7009 7558 1.489230 GGTTCTCCAATACATCCGGGT 59.511 52.381 0.00 0.00 0.00 5.28
7011 7560 3.617284 GTTCTCCAATACATCCGGGTTT 58.383 45.455 0.00 0.00 0.00 3.27
7013 7562 2.841266 TCTCCAATACATCCGGGTTTCA 59.159 45.455 0.00 0.00 0.00 2.69
7015 7564 4.013728 CTCCAATACATCCGGGTTTCAAA 58.986 43.478 0.00 0.00 0.00 2.69
7016 7565 4.408276 TCCAATACATCCGGGTTTCAAAA 58.592 39.130 0.00 0.00 0.00 2.44
7020 7569 3.953712 ACATCCGGGTTTCAAAAATCC 57.046 42.857 0.00 0.00 0.00 3.01
7021 7570 3.235200 ACATCCGGGTTTCAAAAATCCA 58.765 40.909 0.00 0.00 0.00 3.41
7023 7572 2.952116 TCCGGGTTTCAAAAATCCACT 58.048 42.857 0.00 0.00 0.00 4.00
7024 7573 2.888414 TCCGGGTTTCAAAAATCCACTC 59.112 45.455 0.00 0.00 0.00 3.51
7026 7575 3.057526 CCGGGTTTCAAAAATCCACTCTC 60.058 47.826 0.00 0.00 0.00 3.20
7028 7577 4.152647 GGGTTTCAAAAATCCACTCTCCT 58.847 43.478 0.00 0.00 0.00 3.69
7029 7578 4.588951 GGGTTTCAAAAATCCACTCTCCTT 59.411 41.667 0.00 0.00 0.00 3.36
7030 7579 5.773176 GGGTTTCAAAAATCCACTCTCCTTA 59.227 40.000 0.00 0.00 0.00 2.69
7031 7580 6.294564 GGGTTTCAAAAATCCACTCTCCTTAC 60.295 42.308 0.00 0.00 0.00 2.34
7032 7581 6.264518 GGTTTCAAAAATCCACTCTCCTTACA 59.735 38.462 0.00 0.00 0.00 2.41
7033 7582 7.363431 GTTTCAAAAATCCACTCTCCTTACAG 58.637 38.462 0.00 0.00 0.00 2.74
7075 8947 7.116519 GGGATAGACGAAAACATAACTATCTGC 59.883 40.741 0.00 0.00 37.45 4.26
7102 8974 0.709397 TCCCTTTGATTGCCCCATCA 59.291 50.000 0.00 0.00 0.00 3.07
7103 8975 1.291637 TCCCTTTGATTGCCCCATCAT 59.708 47.619 0.00 0.00 0.00 2.45
7104 8976 2.121129 CCCTTTGATTGCCCCATCATT 58.879 47.619 0.00 0.00 0.00 2.57
7105 8977 2.506644 CCCTTTGATTGCCCCATCATTT 59.493 45.455 0.00 0.00 0.00 2.32
7106 8978 3.054213 CCCTTTGATTGCCCCATCATTTT 60.054 43.478 0.00 0.00 0.00 1.82
7107 8979 3.942748 CCTTTGATTGCCCCATCATTTTG 59.057 43.478 0.00 0.00 0.00 2.44
7108 8980 4.566070 CCTTTGATTGCCCCATCATTTTGT 60.566 41.667 0.00 0.00 0.00 2.83
7109 8981 5.338219 CCTTTGATTGCCCCATCATTTTGTA 60.338 40.000 0.00 0.00 0.00 2.41
7110 8982 4.734398 TGATTGCCCCATCATTTTGTAC 57.266 40.909 0.00 0.00 0.00 2.90
7111 8983 4.092279 TGATTGCCCCATCATTTTGTACA 58.908 39.130 0.00 0.00 0.00 2.90
7112 8984 3.951775 TTGCCCCATCATTTTGTACAC 57.048 42.857 0.00 0.00 0.00 2.90
7113 8985 2.175202 TGCCCCATCATTTTGTACACC 58.825 47.619 0.00 0.00 0.00 4.16
7114 8986 2.175202 GCCCCATCATTTTGTACACCA 58.825 47.619 0.00 0.00 0.00 4.17
7115 8987 2.564947 GCCCCATCATTTTGTACACCAA 59.435 45.455 0.00 0.00 0.00 3.67
7116 8988 3.007398 GCCCCATCATTTTGTACACCAAA 59.993 43.478 0.00 0.00 41.25 3.28
7126 8998 6.939132 TTTTGTACACCAAAATAAGACGGA 57.061 33.333 0.00 0.00 45.68 4.69
7127 8999 6.939132 TTTGTACACCAAAATAAGACGGAA 57.061 33.333 0.00 0.00 40.05 4.30
7128 9000 6.548441 TTGTACACCAAAATAAGACGGAAG 57.452 37.500 0.00 0.00 0.00 3.46
7129 9001 6.543100 TTTGTACACCAAAATAAGACGGAAGT 59.457 34.615 0.00 0.00 43.60 3.01
7130 9002 7.714377 TTTGTACACCAAAATAAGACGGAAGTA 59.286 33.333 0.00 0.00 41.94 2.24
7146 9018 6.008960 ACGGAAGTAGAACATATACCCTAGG 58.991 44.000 0.06 0.06 46.88 3.02
7147 9019 6.183361 ACGGAAGTAGAACATATACCCTAGGA 60.183 42.308 11.48 0.00 46.88 2.94
7148 9020 6.374894 CGGAAGTAGAACATATACCCTAGGAG 59.625 46.154 11.48 2.69 0.00 3.69
7149 9021 6.153170 GGAAGTAGAACATATACCCTAGGAGC 59.847 46.154 11.48 0.00 0.00 4.70
7150 9022 6.215515 AGTAGAACATATACCCTAGGAGCA 57.784 41.667 11.48 0.00 0.00 4.26
7151 9023 6.011481 AGTAGAACATATACCCTAGGAGCAC 58.989 44.000 11.48 0.00 0.00 4.40
7152 9024 4.816126 AGAACATATACCCTAGGAGCACA 58.184 43.478 11.48 0.00 0.00 4.57
7153 9025 5.407049 AGAACATATACCCTAGGAGCACAT 58.593 41.667 11.48 0.00 0.00 3.21
7154 9026 5.482175 AGAACATATACCCTAGGAGCACATC 59.518 44.000 11.48 0.00 0.00 3.06
7164 9036 2.573941 GGAGCACATCCTTTGATTGC 57.426 50.000 0.00 0.00 45.64 3.56
7165 9037 1.135721 GGAGCACATCCTTTGATTGCC 59.864 52.381 0.00 0.00 45.64 4.52
7166 9038 1.135721 GAGCACATCCTTTGATTGCCC 59.864 52.381 0.00 0.00 36.50 5.36
7167 9039 0.176449 GCACATCCTTTGATTGCCCC 59.824 55.000 0.00 0.00 33.05 5.80
7168 9040 1.559368 CACATCCTTTGATTGCCCCA 58.441 50.000 0.00 0.00 0.00 4.96
7169 9041 2.112998 CACATCCTTTGATTGCCCCAT 58.887 47.619 0.00 0.00 0.00 4.00
7170 9042 2.502538 CACATCCTTTGATTGCCCCATT 59.497 45.455 0.00 0.00 0.00 3.16
7171 9043 2.502538 ACATCCTTTGATTGCCCCATTG 59.497 45.455 0.00 0.00 0.00 2.82
7172 9044 2.323999 TCCTTTGATTGCCCCATTGT 57.676 45.000 0.00 0.00 0.00 2.71
7173 9045 3.464720 TCCTTTGATTGCCCCATTGTA 57.535 42.857 0.00 0.00 0.00 2.41
7174 9046 3.992999 TCCTTTGATTGCCCCATTGTAT 58.007 40.909 0.00 0.00 0.00 2.29
7175 9047 5.136068 TCCTTTGATTGCCCCATTGTATA 57.864 39.130 0.00 0.00 0.00 1.47
7176 9048 5.139727 TCCTTTGATTGCCCCATTGTATAG 58.860 41.667 0.00 0.00 0.00 1.31
7177 9049 4.281688 CCTTTGATTGCCCCATTGTATAGG 59.718 45.833 0.00 0.00 0.00 2.57
7178 9050 2.875296 TGATTGCCCCATTGTATAGGC 58.125 47.619 0.00 0.00 45.96 3.93
7182 9054 2.364972 GCCCCATTGTATAGGCACTT 57.635 50.000 0.00 0.00 45.07 3.16
7183 9055 1.956477 GCCCCATTGTATAGGCACTTG 59.044 52.381 0.00 0.00 45.07 3.16
7184 9056 2.422803 GCCCCATTGTATAGGCACTTGA 60.423 50.000 0.00 0.00 45.07 3.02
7185 9057 3.480470 CCCCATTGTATAGGCACTTGAG 58.520 50.000 0.00 0.00 41.75 3.02
7186 9058 3.480470 CCCATTGTATAGGCACTTGAGG 58.520 50.000 0.00 0.00 41.75 3.86
7187 9059 3.136443 CCCATTGTATAGGCACTTGAGGA 59.864 47.826 0.00 0.00 41.75 3.71
7188 9060 4.384056 CCATTGTATAGGCACTTGAGGAG 58.616 47.826 0.00 0.00 41.75 3.69
7189 9061 3.543680 TTGTATAGGCACTTGAGGAGC 57.456 47.619 0.00 0.00 41.75 4.70
7190 9062 2.466846 TGTATAGGCACTTGAGGAGCA 58.533 47.619 0.00 0.00 41.75 4.26
7191 9063 2.168521 TGTATAGGCACTTGAGGAGCAC 59.831 50.000 0.00 0.00 41.75 4.40
7192 9064 1.279496 ATAGGCACTTGAGGAGCACA 58.721 50.000 0.00 0.00 41.75 4.57
7193 9065 1.279496 TAGGCACTTGAGGAGCACAT 58.721 50.000 0.00 0.00 41.75 3.21
7194 9066 0.035630 AGGCACTTGAGGAGCACATC 60.036 55.000 0.00 0.00 27.25 3.06
7195 9067 3.399966 AGGCACTTGAGGAGCACATCC 62.400 57.143 0.00 0.00 43.38 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
665 699 1.808531 GCTGTCAGCCATTGCACCAA 61.809 55.000 14.27 0.00 41.13 3.67
698 732 8.771521 TTATGTATGGAGTAGGTGCTTACTAA 57.228 34.615 0.00 0.00 34.13 2.24
703 737 7.071196 TCTCATTTATGTATGGAGTAGGTGCTT 59.929 37.037 0.00 0.00 0.00 3.91
792 826 8.500753 AGCGTAAATGGTTACTTTGATGATAA 57.499 30.769 0.00 0.00 37.97 1.75
795 829 7.604927 ACTTAGCGTAAATGGTTACTTTGATGA 59.395 33.333 0.00 0.00 37.97 2.92
805 839 3.057806 GCCACAACTTAGCGTAAATGGTT 60.058 43.478 0.00 0.00 0.00 3.67
825 859 2.825532 AGTCAATTACATTGGTGGTGCC 59.174 45.455 0.00 0.00 40.61 5.01
835 869 7.594758 CCAATTTTCGTGTTGAGTCAATTACAT 59.405 33.333 9.18 0.00 0.00 2.29
924 961 2.181021 GCGTGTAGGTCGTGGAGG 59.819 66.667 0.00 0.00 0.00 4.30
935 972 4.175489 GAGCGAGCGAGGCGTGTA 62.175 66.667 0.00 0.00 35.00 2.90
1366 1410 4.082408 CGGACTAGTCTGAACCATAACACA 60.082 45.833 24.97 0.00 38.21 3.72
1369 1413 4.715527 ACGGACTAGTCTGAACCATAAC 57.284 45.455 33.50 8.32 39.24 1.89
1403 1447 6.548171 GCACAAACAAGGTAGCGATATAAAA 58.452 36.000 0.00 0.00 0.00 1.52
1471 1515 6.092533 CCATTTTAACAACCGTACGAAGGTAT 59.907 38.462 18.76 0.72 41.95 2.73
1497 1542 1.678627 CCACGGTGGAGTAGAGATCTG 59.321 57.143 22.77 0.00 40.96 2.90
1614 1703 3.887621 AGGCACACTTAATCTTAGCGA 57.112 42.857 0.00 0.00 0.00 4.93
1632 1721 5.500234 TCTCCATCAATCCAACTAACAAGG 58.500 41.667 0.00 0.00 0.00 3.61
1656 1745 4.155826 CCATTCCGTGCTTACAAAATCTCA 59.844 41.667 0.00 0.00 0.00 3.27
1669 1758 6.190954 AGTAGTAAATTTTCCATTCCGTGC 57.809 37.500 0.00 0.00 0.00 5.34
2096 2195 5.278169 GGATTCACATGCCATGAGAATGTAC 60.278 44.000 27.62 16.56 45.99 2.90
2126 2225 7.327275 GTCATTCGACATCACTGAATAGGATAC 59.673 40.741 0.00 0.00 42.13 2.24
2244 2343 3.141398 CAACTTTGCTGCTCCTGTCTAA 58.859 45.455 0.00 0.00 0.00 2.10
2405 2504 6.359804 CACCCTTTTTCCATGAGATCATAGA 58.640 40.000 0.00 0.00 34.26 1.98
2407 2506 5.448654 CCACCCTTTTTCCATGAGATCATA 58.551 41.667 0.00 0.00 34.26 2.15
2545 2674 5.644977 TCACTAGTATGTCAGTCCAACAG 57.355 43.478 0.00 0.00 0.00 3.16
2668 2800 6.189859 TGGCTCCACTGAAATATTCAAGAAT 58.810 36.000 0.52 0.52 39.58 2.40
2745 3029 3.944015 GTCTCCTGATTGGAAATCACAGG 59.056 47.826 0.00 0.00 45.63 4.00
2894 3225 9.665719 CTTGTTTGCCCCTTGTTTTAATAATAT 57.334 29.630 0.00 0.00 0.00 1.28
3061 3392 6.561350 CGCTGCTGGTTTTGTTTGTTTATTAC 60.561 38.462 0.00 0.00 0.00 1.89
3160 3494 5.702209 CCCTAAACCTACGTACAACATGTTT 59.298 40.000 8.77 3.54 0.00 2.83
3209 3543 5.170748 CAAGGGGTGAAAATATGTGAAAGC 58.829 41.667 0.00 0.00 0.00 3.51
3225 3559 4.202315 GCCAAATACTTTCAAACAAGGGGT 60.202 41.667 0.00 0.00 0.00 4.95
3231 3565 5.860941 TGGAAGCCAAATACTTTCAAACA 57.139 34.783 0.00 0.00 29.52 2.83
3244 3578 0.597568 CGCACATTCTTGGAAGCCAA 59.402 50.000 0.00 0.00 41.69 4.52
3460 3796 8.384607 TGGCAATTTATACGATGCAATACTTA 57.615 30.769 0.00 0.00 40.51 2.24
3525 3861 4.142643 ACTGAAGTTGTACTAGAGCTACGC 60.143 45.833 0.00 0.00 0.00 4.42
3556 3892 6.318144 TCGCAGCTCTAGTACAACTTTAGTAT 59.682 38.462 0.00 0.00 0.00 2.12
3557 3893 5.645067 TCGCAGCTCTAGTACAACTTTAGTA 59.355 40.000 0.00 0.00 0.00 1.82
3558 3894 4.458295 TCGCAGCTCTAGTACAACTTTAGT 59.542 41.667 0.00 0.00 0.00 2.24
3559 3895 4.794246 GTCGCAGCTCTAGTACAACTTTAG 59.206 45.833 0.00 0.00 0.00 1.85
3560 3896 4.216902 TGTCGCAGCTCTAGTACAACTTTA 59.783 41.667 0.00 0.00 0.00 1.85
3561 3897 3.005472 TGTCGCAGCTCTAGTACAACTTT 59.995 43.478 0.00 0.00 0.00 2.66
3599 3964 7.013369 CCTTAGCAATAAAGACAAATACTCCCC 59.987 40.741 0.00 0.00 0.00 4.81
3805 4172 6.472016 TGTGGCACTTTTCAGTTCTATATCA 58.528 36.000 19.83 0.00 0.00 2.15
3842 4212 3.751175 TGTGTAGGCATTGTAGCTTGTTC 59.249 43.478 0.00 0.00 34.17 3.18
3853 4223 1.584724 AGGCTAGGTGTGTAGGCATT 58.415 50.000 7.15 0.00 45.79 3.56
3964 4335 2.626266 TGTGGTCGTTACTCACTCATGT 59.374 45.455 0.00 0.00 31.73 3.21
4209 4582 9.807649 GAATGTCCTCTTGCAAAATTATTATGT 57.192 29.630 0.00 0.00 0.00 2.29
4401 4776 6.127647 ACAATTATAAGTGCACATTCACTGGG 60.128 38.462 21.04 3.87 45.77 4.45
4468 4849 7.336931 TCTGGACTTAAATTTAGGCTGATGTTC 59.663 37.037 7.21 0.00 0.00 3.18
4542 4923 5.617528 TTTGCGTATTTCTCCTACCCATA 57.382 39.130 0.00 0.00 0.00 2.74
4559 4940 0.247185 ATCATGCCCCTGTTTTTGCG 59.753 50.000 0.00 0.00 0.00 4.85
4632 5016 8.145767 CCATTGCATACTTCCATAATTCATTGT 58.854 33.333 0.00 0.00 0.00 2.71
4756 5140 9.334947 CAAGTGACCATCTATTCTCAAATATGT 57.665 33.333 0.00 0.00 0.00 2.29
4757 5141 9.551734 TCAAGTGACCATCTATTCTCAAATATG 57.448 33.333 0.00 0.00 0.00 1.78
4766 5150 7.721402 ACTCTATGTCAAGTGACCATCTATTC 58.279 38.462 8.91 0.00 44.15 1.75
4911 5295 2.909504 ACTCTCCTACTTGAGCCTCA 57.090 50.000 0.00 0.00 33.92 3.86
5161 5545 2.738521 CTACACGCTTGCGTGGCT 60.739 61.111 38.57 26.70 43.44 4.75
5187 5571 4.764823 TGGCAGATAAAAAGTGGGTAACTG 59.235 41.667 0.00 0.00 39.81 3.16
5292 5676 4.037923 TCTGAGAACACCCAAAGAAATTGC 59.962 41.667 0.00 0.00 37.73 3.56
5446 5830 0.746063 CAACAAAGCTCTGGTGGCAA 59.254 50.000 0.00 0.00 29.85 4.52
5610 6156 2.286365 TGTTGCCTTTTCCTACCCAG 57.714 50.000 0.00 0.00 0.00 4.45
5679 6225 0.796927 GGACACTAAAGCTTCACGCC 59.203 55.000 0.00 0.00 40.39 5.68
5706 6252 5.211454 CAACAACGTTGAGCAAACATATCA 58.789 37.500 33.66 0.00 38.84 2.15
5769 6315 1.153745 CAGCTCTGTACCTGCGGTC 60.154 63.158 3.45 0.00 37.09 4.79
5772 6318 0.734253 GTGACAGCTCTGTACCTGCG 60.734 60.000 2.07 0.00 45.05 5.18
5891 6437 3.665745 ATGTTTTTGTCTGCATGACCC 57.334 42.857 11.99 0.00 44.75 4.46
5990 6536 3.835395 GGAAGAAGAGGTTCTCCTTCTCA 59.165 47.826 5.28 0.00 42.59 3.27
6107 6653 1.155155 ATTGGCCTTTGGGTCGGTT 59.845 52.632 3.32 0.00 40.80 4.44
6216 6762 4.323028 CCAACAAATCTGGTAGCAGAGAGA 60.323 45.833 27.04 7.37 34.35 3.10
6217 6763 3.937706 CCAACAAATCTGGTAGCAGAGAG 59.062 47.826 27.04 20.56 34.35 3.20
6257 6803 7.539436 TCTATATCCAGACAGCGTGAATATTC 58.461 38.462 8.60 8.60 0.00 1.75
6258 6804 7.468141 TCTATATCCAGACAGCGTGAATATT 57.532 36.000 0.00 0.00 0.00 1.28
6259 6805 7.652524 ATCTATATCCAGACAGCGTGAATAT 57.347 36.000 0.00 0.00 0.00 1.28
6260 6806 7.089770 GATCTATATCCAGACAGCGTGAATA 57.910 40.000 0.00 0.00 0.00 1.75
6261 6807 5.960113 GATCTATATCCAGACAGCGTGAAT 58.040 41.667 0.00 0.00 0.00 2.57
6407 6953 2.742204 GCTCGGACCTATGAAAAGGGAC 60.742 54.545 0.00 0.00 41.32 4.46
6511 7060 1.652619 CGCATCAGCATATGAGCTACG 59.347 52.381 6.97 0.00 44.54 3.51
6512 7061 2.681706 ACGCATCAGCATATGAGCTAC 58.318 47.619 6.97 0.00 44.54 3.58
6513 7062 3.062042 CAACGCATCAGCATATGAGCTA 58.938 45.455 6.97 0.00 44.54 3.32
6585 7134 2.871096 TTTGTAAGCTCCGTCCCATT 57.129 45.000 0.00 0.00 0.00 3.16
6606 7155 2.610374 CGGGTTCGAAGTGACTTTTTGA 59.390 45.455 0.00 0.00 39.00 2.69
6607 7156 2.286772 CCGGGTTCGAAGTGACTTTTTG 60.287 50.000 0.00 0.00 39.00 2.44
6608 7157 1.944709 CCGGGTTCGAAGTGACTTTTT 59.055 47.619 0.00 0.00 39.00 1.94
6609 7158 1.589803 CCGGGTTCGAAGTGACTTTT 58.410 50.000 0.00 0.00 39.00 2.27
6610 7159 0.250166 CCCGGGTTCGAAGTGACTTT 60.250 55.000 14.18 0.00 39.00 2.66
6611 7160 1.370064 CCCGGGTTCGAAGTGACTT 59.630 57.895 14.18 0.00 39.00 3.01
6613 7162 1.666872 CACCCGGGTTCGAAGTGAC 60.667 63.158 27.83 0.00 40.44 3.67
6614 7163 2.738480 CACCCGGGTTCGAAGTGA 59.262 61.111 27.83 0.00 40.44 3.41
6615 7164 3.047877 GCACCCGGGTTCGAAGTG 61.048 66.667 27.83 12.62 40.73 3.16
6616 7165 2.406002 AATGCACCCGGGTTCGAAGT 62.406 55.000 27.83 4.26 39.00 3.01
6617 7166 1.674322 AATGCACCCGGGTTCGAAG 60.674 57.895 27.83 14.29 39.00 3.79
6618 7167 1.969064 CAATGCACCCGGGTTCGAA 60.969 57.895 27.83 9.26 39.00 3.71
6620 7169 3.439540 CCAATGCACCCGGGTTCG 61.440 66.667 27.83 16.06 0.00 3.95
6621 7170 2.034999 TCCAATGCACCCGGGTTC 59.965 61.111 27.83 22.19 0.00 3.62
6622 7171 2.035626 CTCCAATGCACCCGGGTT 59.964 61.111 27.83 7.04 0.00 4.11
6623 7172 4.740822 GCTCCAATGCACCCGGGT 62.741 66.667 24.16 24.16 0.00 5.28
6627 7176 0.106015 AATAGGGCTCCAATGCACCC 60.106 55.000 0.00 0.00 43.17 4.61
6629 7178 3.893326 AAAAATAGGGCTCCAATGCAC 57.107 42.857 0.00 0.00 36.44 4.57
6646 7195 7.856145 ATAACATTTTGGCACAGTTCAAAAA 57.144 28.000 12.84 2.55 43.27 1.94
6647 7196 7.856145 AATAACATTTTGGCACAGTTCAAAA 57.144 28.000 11.75 11.75 43.87 2.44
6648 7197 7.856145 AAATAACATTTTGGCACAGTTCAAA 57.144 28.000 0.00 0.00 42.39 2.69
6650 7199 8.948631 TTAAAATAACATTTTGGCACAGTTCA 57.051 26.923 7.04 0.00 42.39 3.18
6651 7200 9.862585 CTTTAAAATAACATTTTGGCACAGTTC 57.137 29.630 7.04 0.00 42.39 3.01
6652 7201 9.389755 ACTTTAAAATAACATTTTGGCACAGTT 57.610 25.926 7.04 0.00 42.39 3.16
6653 7202 8.956533 ACTTTAAAATAACATTTTGGCACAGT 57.043 26.923 7.04 0.87 42.39 3.55
6672 7221 9.765795 TGTTTCCAGAACTTTTTGAAACTTTAA 57.234 25.926 12.80 0.00 43.11 1.52
6673 7222 9.765795 TTGTTTCCAGAACTTTTTGAAACTTTA 57.234 25.926 12.80 0.00 43.11 1.85
6675 7224 8.669946 TTTGTTTCCAGAACTTTTTGAAACTT 57.330 26.923 12.80 0.00 43.11 2.66
6676 7225 8.846943 ATTTGTTTCCAGAACTTTTTGAAACT 57.153 26.923 12.80 0.00 43.11 2.66
6678 7227 8.839310 TGATTTGTTTCCAGAACTTTTTGAAA 57.161 26.923 0.00 0.00 0.00 2.69
6679 7228 8.716909 GTTGATTTGTTTCCAGAACTTTTTGAA 58.283 29.630 0.00 0.00 0.00 2.69
6680 7229 7.875041 TGTTGATTTGTTTCCAGAACTTTTTGA 59.125 29.630 0.00 0.00 0.00 2.69
6681 7230 8.027440 TGTTGATTTGTTTCCAGAACTTTTTG 57.973 30.769 0.00 0.00 0.00 2.44
6682 7231 8.667463 CATGTTGATTTGTTTCCAGAACTTTTT 58.333 29.630 0.00 0.00 0.00 1.94
6683 7232 7.823799 ACATGTTGATTTGTTTCCAGAACTTTT 59.176 29.630 0.00 0.00 0.00 2.27
6684 7233 7.330262 ACATGTTGATTTGTTTCCAGAACTTT 58.670 30.769 0.00 0.00 0.00 2.66
6687 7236 7.538303 AAACATGTTGATTTGTTTCCAGAAC 57.462 32.000 12.82 0.00 40.99 3.01
6727 7276 9.539825 TTTTAGCATCAAAATTTACACATGTGT 57.460 25.926 32.47 32.47 46.87 3.72
6741 7290 9.853555 CACATGGTTACTTATTTTAGCATCAAA 57.146 29.630 0.00 0.00 0.00 2.69
6742 7291 9.237187 TCACATGGTTACTTATTTTAGCATCAA 57.763 29.630 0.00 0.00 0.00 2.57
6746 7295 9.853555 CAATTCACATGGTTACTTATTTTAGCA 57.146 29.630 0.00 0.00 0.00 3.49
6747 7296 8.807581 GCAATTCACATGGTTACTTATTTTAGC 58.192 33.333 0.00 0.00 0.00 3.09
6749 7298 9.632807 GTGCAATTCACATGGTTACTTATTTTA 57.367 29.630 0.00 0.00 44.98 1.52
6750 7299 8.532977 GTGCAATTCACATGGTTACTTATTTT 57.467 30.769 0.00 0.00 44.98 1.82
6765 7314 7.110490 CGATTTTGTCATTTTTGTGCAATTCAC 59.890 33.333 0.00 2.27 45.82 3.18
6766 7315 7.124471 CGATTTTGTCATTTTTGTGCAATTCA 58.876 30.769 0.00 0.00 0.00 2.57
6767 7316 7.110490 CACGATTTTGTCATTTTTGTGCAATTC 59.890 33.333 0.00 0.00 0.00 2.17
6768 7317 6.906143 CACGATTTTGTCATTTTTGTGCAATT 59.094 30.769 0.00 0.00 0.00 2.32
6769 7318 6.257411 TCACGATTTTGTCATTTTTGTGCAAT 59.743 30.769 0.00 0.00 0.00 3.56
6771 7320 5.105063 TCACGATTTTGTCATTTTTGTGCA 58.895 33.333 0.00 0.00 0.00 4.57
6772 7321 5.633996 TCACGATTTTGTCATTTTTGTGC 57.366 34.783 0.00 0.00 0.00 4.57
6787 7336 8.137437 ACTGTTCATCTTTTCAAAATCACGATT 58.863 29.630 0.00 0.00 0.00 3.34
6788 7337 7.592533 CACTGTTCATCTTTTCAAAATCACGAT 59.407 33.333 0.00 0.00 0.00 3.73
6790 7339 6.345250 GCACTGTTCATCTTTTCAAAATCACG 60.345 38.462 0.00 0.00 0.00 4.35
6791 7340 6.476380 TGCACTGTTCATCTTTTCAAAATCAC 59.524 34.615 0.00 0.00 0.00 3.06
6792 7341 6.571605 TGCACTGTTCATCTTTTCAAAATCA 58.428 32.000 0.00 0.00 0.00 2.57
6794 7343 6.073440 GCATGCACTGTTCATCTTTTCAAAAT 60.073 34.615 14.21 0.00 0.00 1.82
6795 7344 5.234757 GCATGCACTGTTCATCTTTTCAAAA 59.765 36.000 14.21 0.00 0.00 2.44
6796 7345 4.746115 GCATGCACTGTTCATCTTTTCAAA 59.254 37.500 14.21 0.00 0.00 2.69
6797 7346 4.202131 TGCATGCACTGTTCATCTTTTCAA 60.202 37.500 18.46 0.00 0.00 2.69
6798 7347 3.318557 TGCATGCACTGTTCATCTTTTCA 59.681 39.130 18.46 0.00 0.00 2.69
6799 7348 3.904571 TGCATGCACTGTTCATCTTTTC 58.095 40.909 18.46 0.00 0.00 2.29
6802 7351 5.847111 ATAATGCATGCACTGTTCATCTT 57.153 34.783 25.37 12.49 0.00 2.40
6804 7353 5.584442 TGAATAATGCATGCACTGTTCATC 58.416 37.500 29.54 18.47 0.00 2.92
6806 7355 5.585820 ATGAATAATGCATGCACTGTTCA 57.414 34.783 33.17 33.17 31.90 3.18
6807 7356 8.583810 AATAATGAATAATGCATGCACTGTTC 57.416 30.769 25.71 25.71 0.00 3.18
6808 7357 8.822855 CAAATAATGAATAATGCATGCACTGTT 58.177 29.630 25.37 17.77 0.00 3.16
6809 7358 7.439955 CCAAATAATGAATAATGCATGCACTGT 59.560 33.333 25.37 7.79 0.00 3.55
6810 7359 7.654116 TCCAAATAATGAATAATGCATGCACTG 59.346 33.333 25.37 2.93 0.00 3.66
6811 7360 7.728148 TCCAAATAATGAATAATGCATGCACT 58.272 30.769 25.37 16.26 0.00 4.40
6812 7361 7.949903 TCCAAATAATGAATAATGCATGCAC 57.050 32.000 25.37 10.66 0.00 4.57
6813 7362 8.959705 TTTCCAAATAATGAATAATGCATGCA 57.040 26.923 25.04 25.04 0.00 3.96
6833 7382 9.829507 ACAAAAATGACAAAATAGTGATTTCCA 57.170 25.926 0.00 0.00 34.88 3.53
6844 7393 9.723601 ATGCAACCTATACAAAAATGACAAAAT 57.276 25.926 0.00 0.00 0.00 1.82
6861 7410 9.549078 TGATGAAATACGTAAATATGCAACCTA 57.451 29.630 0.00 0.00 0.00 3.08
6862 7411 8.342634 GTGATGAAATACGTAAATATGCAACCT 58.657 33.333 0.00 0.00 0.00 3.50
6863 7412 7.589954 GGTGATGAAATACGTAAATATGCAACC 59.410 37.037 0.00 0.00 0.00 3.77
6864 7413 8.126074 TGGTGATGAAATACGTAAATATGCAAC 58.874 33.333 0.00 0.00 0.00 4.17
6865 7414 8.214721 TGGTGATGAAATACGTAAATATGCAA 57.785 30.769 0.00 0.00 0.00 4.08
6866 7415 7.793927 TGGTGATGAAATACGTAAATATGCA 57.206 32.000 0.00 0.00 0.00 3.96
6872 7421 9.881529 GTAAAGTTTGGTGATGAAATACGTAAA 57.118 29.630 0.00 0.00 0.00 2.01
6873 7422 9.053840 TGTAAAGTTTGGTGATGAAATACGTAA 57.946 29.630 0.00 0.00 0.00 3.18
6875 7424 7.012515 TGTGTAAAGTTTGGTGATGAAATACGT 59.987 33.333 0.00 0.00 0.00 3.57
6877 7426 9.128107 CATGTGTAAAGTTTGGTGATGAAATAC 57.872 33.333 0.00 0.00 0.00 1.89
6878 7427 8.855110 ACATGTGTAAAGTTTGGTGATGAAATA 58.145 29.630 0.00 0.00 0.00 1.40
6879 7428 7.652909 CACATGTGTAAAGTTTGGTGATGAAAT 59.347 33.333 18.03 0.00 0.00 2.17
6880 7429 6.977502 CACATGTGTAAAGTTTGGTGATGAAA 59.022 34.615 18.03 0.00 0.00 2.69
6881 7430 6.096141 ACACATGTGTAAAGTTTGGTGATGAA 59.904 34.615 29.66 0.00 42.90 2.57
6882 7431 5.592282 ACACATGTGTAAAGTTTGGTGATGA 59.408 36.000 29.66 0.00 42.90 2.92
6883 7432 5.830912 ACACATGTGTAAAGTTTGGTGATG 58.169 37.500 29.66 0.00 42.90 3.07
6896 7445 9.927668 CATATGGATGTATCTTACACATGTGTA 57.072 33.333 30.31 30.31 44.42 2.90
6898 7447 9.662947 ATCATATGGATGTATCTTACACATGTG 57.337 33.333 24.25 24.25 42.23 3.21
6899 7448 9.881649 GATCATATGGATGTATCTTACACATGT 57.118 33.333 2.13 0.00 42.23 3.21
6900 7449 9.880157 TGATCATATGGATGTATCTTACACATG 57.120 33.333 2.13 0.00 42.23 3.21
6901 7450 9.881649 GTGATCATATGGATGTATCTTACACAT 57.118 33.333 0.00 0.00 42.23 3.21
6902 7451 8.028938 CGTGATCATATGGATGTATCTTACACA 58.971 37.037 0.00 0.00 42.23 3.72
6903 7452 8.029522 ACGTGATCATATGGATGTATCTTACAC 58.970 37.037 0.00 0.00 42.23 2.90
6904 7453 8.122472 ACGTGATCATATGGATGTATCTTACA 57.878 34.615 0.00 0.00 43.80 2.41
6906 7455 9.681062 TCTACGTGATCATATGGATGTATCTTA 57.319 33.333 0.00 0.00 36.00 2.10
6907 7456 8.581253 TCTACGTGATCATATGGATGTATCTT 57.419 34.615 0.00 0.00 36.00 2.40
6908 7457 8.581253 TTCTACGTGATCATATGGATGTATCT 57.419 34.615 0.00 0.00 36.00 1.98
6909 7458 9.809096 AATTCTACGTGATCATATGGATGTATC 57.191 33.333 0.00 0.00 36.00 2.24
6911 7460 9.996554 AAAATTCTACGTGATCATATGGATGTA 57.003 29.630 0.00 3.17 36.00 2.29
6912 7461 8.908786 AAAATTCTACGTGATCATATGGATGT 57.091 30.769 0.00 2.17 36.00 3.06
6980 7529 9.116067 CGGATGTATTGGAGAACCTTATTTTAA 57.884 33.333 0.00 0.00 37.04 1.52
6981 7530 7.717875 CCGGATGTATTGGAGAACCTTATTTTA 59.282 37.037 0.00 0.00 37.04 1.52
6982 7531 6.546034 CCGGATGTATTGGAGAACCTTATTTT 59.454 38.462 0.00 0.00 37.04 1.82
6983 7532 6.062095 CCGGATGTATTGGAGAACCTTATTT 58.938 40.000 0.00 0.00 37.04 1.40
6986 7535 3.389983 CCCGGATGTATTGGAGAACCTTA 59.610 47.826 0.73 0.00 37.04 2.69
6987 7536 2.172717 CCCGGATGTATTGGAGAACCTT 59.827 50.000 0.73 0.00 37.04 3.50
6989 7538 1.489230 ACCCGGATGTATTGGAGAACC 59.511 52.381 0.73 0.00 0.00 3.62
6990 7539 3.277142 AACCCGGATGTATTGGAGAAC 57.723 47.619 0.73 0.00 0.00 3.01
6991 7540 3.264706 TGAAACCCGGATGTATTGGAGAA 59.735 43.478 0.73 0.00 0.00 2.87
6992 7541 2.841266 TGAAACCCGGATGTATTGGAGA 59.159 45.455 0.73 0.00 0.00 3.71
6994 7543 3.722908 TTGAAACCCGGATGTATTGGA 57.277 42.857 0.73 0.00 0.00 3.53
6996 7545 5.810074 GGATTTTTGAAACCCGGATGTATTG 59.190 40.000 0.73 0.00 0.00 1.90
6997 7546 5.482175 TGGATTTTTGAAACCCGGATGTATT 59.518 36.000 0.73 0.00 0.00 1.89
6998 7547 5.020132 TGGATTTTTGAAACCCGGATGTAT 58.980 37.500 0.73 0.00 0.00 2.29
6999 7548 4.218852 GTGGATTTTTGAAACCCGGATGTA 59.781 41.667 0.73 0.00 0.00 2.29
7000 7549 3.006430 GTGGATTTTTGAAACCCGGATGT 59.994 43.478 0.73 0.00 0.00 3.06
7002 7551 3.506398 AGTGGATTTTTGAAACCCGGAT 58.494 40.909 0.73 0.00 0.00 4.18
7003 7552 2.888414 GAGTGGATTTTTGAAACCCGGA 59.112 45.455 0.73 0.00 0.00 5.14
7005 7554 3.057526 GGAGAGTGGATTTTTGAAACCCG 60.058 47.826 0.00 0.00 0.00 5.28
7006 7555 4.152647 AGGAGAGTGGATTTTTGAAACCC 58.847 43.478 0.00 0.00 0.00 4.11
7007 7556 5.791336 AAGGAGAGTGGATTTTTGAAACC 57.209 39.130 0.00 0.00 0.00 3.27
7009 7558 7.287061 TCTGTAAGGAGAGTGGATTTTTGAAA 58.713 34.615 0.00 0.00 0.00 2.69
7011 7560 6.433847 TCTGTAAGGAGAGTGGATTTTTGA 57.566 37.500 0.00 0.00 0.00 2.69
7013 7562 6.601332 TGTTCTGTAAGGAGAGTGGATTTTT 58.399 36.000 0.00 0.00 0.00 1.94
7015 7564 5.825593 TGTTCTGTAAGGAGAGTGGATTT 57.174 39.130 0.00 0.00 0.00 2.17
7016 7565 5.723887 AGATGTTCTGTAAGGAGAGTGGATT 59.276 40.000 0.00 0.00 0.00 3.01
7067 8939 1.842562 AGGGATGTGCTTGCAGATAGT 59.157 47.619 5.23 0.00 0.00 2.12
7075 8947 2.613691 GCAATCAAAGGGATGTGCTTG 58.386 47.619 0.00 0.00 37.21 4.01
7104 8976 6.543100 ACTTCCGTCTTATTTTGGTGTACAAA 59.457 34.615 0.00 0.00 46.82 2.83
7105 8977 6.056884 ACTTCCGTCTTATTTTGGTGTACAA 58.943 36.000 0.00 0.00 37.28 2.41
7106 8978 5.613329 ACTTCCGTCTTATTTTGGTGTACA 58.387 37.500 0.00 0.00 0.00 2.90
7107 8979 7.092716 TCTACTTCCGTCTTATTTTGGTGTAC 58.907 38.462 0.00 0.00 0.00 2.90
7108 8980 7.230849 TCTACTTCCGTCTTATTTTGGTGTA 57.769 36.000 0.00 0.00 0.00 2.90
7109 8981 6.105397 TCTACTTCCGTCTTATTTTGGTGT 57.895 37.500 0.00 0.00 0.00 4.16
7110 8982 6.425721 TGTTCTACTTCCGTCTTATTTTGGTG 59.574 38.462 0.00 0.00 0.00 4.17
7111 8983 6.527423 TGTTCTACTTCCGTCTTATTTTGGT 58.473 36.000 0.00 0.00 0.00 3.67
7112 8984 7.611213 ATGTTCTACTTCCGTCTTATTTTGG 57.389 36.000 0.00 0.00 0.00 3.28
7115 8987 9.978044 GGTATATGTTCTACTTCCGTCTTATTT 57.022 33.333 0.00 0.00 0.00 1.40
7116 8988 8.583296 GGGTATATGTTCTACTTCCGTCTTATT 58.417 37.037 0.00 0.00 0.00 1.40
7117 8989 7.949006 AGGGTATATGTTCTACTTCCGTCTTAT 59.051 37.037 0.00 0.00 0.00 1.73
7118 8990 7.293073 AGGGTATATGTTCTACTTCCGTCTTA 58.707 38.462 0.00 0.00 0.00 2.10
7119 8991 6.134754 AGGGTATATGTTCTACTTCCGTCTT 58.865 40.000 0.00 0.00 0.00 3.01
7120 8992 5.703310 AGGGTATATGTTCTACTTCCGTCT 58.297 41.667 0.00 0.00 0.00 4.18
7121 8993 6.150809 CCTAGGGTATATGTTCTACTTCCGTC 59.849 46.154 0.00 0.00 0.00 4.79
7122 8994 6.008960 CCTAGGGTATATGTTCTACTTCCGT 58.991 44.000 0.00 0.00 0.00 4.69
7123 8995 6.243900 TCCTAGGGTATATGTTCTACTTCCG 58.756 44.000 9.46 0.00 0.00 4.30
7124 8996 6.153170 GCTCCTAGGGTATATGTTCTACTTCC 59.847 46.154 9.46 0.00 0.00 3.46
7125 8997 6.720288 TGCTCCTAGGGTATATGTTCTACTTC 59.280 42.308 9.46 0.00 0.00 3.01
7126 8998 6.494146 GTGCTCCTAGGGTATATGTTCTACTT 59.506 42.308 9.46 0.00 0.00 2.24
7127 8999 6.011481 GTGCTCCTAGGGTATATGTTCTACT 58.989 44.000 9.46 0.00 0.00 2.57
7128 9000 5.773680 TGTGCTCCTAGGGTATATGTTCTAC 59.226 44.000 9.46 0.00 0.00 2.59
7129 9001 5.960704 TGTGCTCCTAGGGTATATGTTCTA 58.039 41.667 9.46 0.00 0.00 2.10
7130 9002 4.816126 TGTGCTCCTAGGGTATATGTTCT 58.184 43.478 9.46 0.00 0.00 3.01
7131 9003 5.337652 GGATGTGCTCCTAGGGTATATGTTC 60.338 48.000 9.46 0.00 41.29 3.18
7132 9004 4.532521 GGATGTGCTCCTAGGGTATATGTT 59.467 45.833 9.46 0.00 41.29 2.71
7133 9005 4.097418 GGATGTGCTCCTAGGGTATATGT 58.903 47.826 9.46 0.00 41.29 2.29
7134 9006 4.744795 GGATGTGCTCCTAGGGTATATG 57.255 50.000 9.46 0.00 41.29 1.78
7145 9017 1.135721 GGCAATCAAAGGATGTGCTCC 59.864 52.381 0.00 0.00 45.33 4.70
7146 9018 1.135721 GGGCAATCAAAGGATGTGCTC 59.864 52.381 0.00 0.00 37.53 4.26
7147 9019 1.188863 GGGCAATCAAAGGATGTGCT 58.811 50.000 0.00 0.00 37.53 4.40
7148 9020 0.176449 GGGGCAATCAAAGGATGTGC 59.824 55.000 0.00 0.00 37.09 4.57
7149 9021 1.559368 TGGGGCAATCAAAGGATGTG 58.441 50.000 0.00 0.00 32.92 3.21
7150 9022 2.502538 CAATGGGGCAATCAAAGGATGT 59.497 45.455 0.00 0.00 32.92 3.06
7151 9023 2.502538 ACAATGGGGCAATCAAAGGATG 59.497 45.455 0.00 0.00 32.92 3.51
7152 9024 2.836667 ACAATGGGGCAATCAAAGGAT 58.163 42.857 0.00 0.00 34.43 3.24
7153 9025 2.323999 ACAATGGGGCAATCAAAGGA 57.676 45.000 0.00 0.00 0.00 3.36
7154 9026 4.281688 CCTATACAATGGGGCAATCAAAGG 59.718 45.833 0.00 0.00 0.00 3.11
7155 9027 4.262164 GCCTATACAATGGGGCAATCAAAG 60.262 45.833 0.00 0.00 43.59 2.77
7156 9028 3.640967 GCCTATACAATGGGGCAATCAAA 59.359 43.478 0.00 0.00 43.59 2.69
7157 9029 3.230134 GCCTATACAATGGGGCAATCAA 58.770 45.455 0.00 0.00 43.59 2.57
7158 9030 2.875296 GCCTATACAATGGGGCAATCA 58.125 47.619 0.00 0.00 43.59 2.57
7163 9035 1.956477 CAAGTGCCTATACAATGGGGC 59.044 52.381 0.00 0.00 44.31 5.80
7164 9036 3.480470 CTCAAGTGCCTATACAATGGGG 58.520 50.000 0.00 0.00 0.00 4.96
7165 9037 3.136443 TCCTCAAGTGCCTATACAATGGG 59.864 47.826 0.00 0.00 0.00 4.00
7166 9038 4.384056 CTCCTCAAGTGCCTATACAATGG 58.616 47.826 0.00 0.00 0.00 3.16
7167 9039 3.812053 GCTCCTCAAGTGCCTATACAATG 59.188 47.826 0.00 0.00 0.00 2.82
7168 9040 3.455910 TGCTCCTCAAGTGCCTATACAAT 59.544 43.478 0.00 0.00 33.94 2.71
7169 9041 2.837591 TGCTCCTCAAGTGCCTATACAA 59.162 45.455 0.00 0.00 33.94 2.41
7170 9042 2.168521 GTGCTCCTCAAGTGCCTATACA 59.831 50.000 0.00 0.00 33.94 2.29
7171 9043 2.168521 TGTGCTCCTCAAGTGCCTATAC 59.831 50.000 0.00 0.00 33.94 1.47
7172 9044 2.466846 TGTGCTCCTCAAGTGCCTATA 58.533 47.619 0.00 0.00 33.94 1.31
7173 9045 1.279496 TGTGCTCCTCAAGTGCCTAT 58.721 50.000 0.00 0.00 33.94 2.57
7174 9046 1.208052 GATGTGCTCCTCAAGTGCCTA 59.792 52.381 0.00 0.00 33.94 3.93
7175 9047 0.035630 GATGTGCTCCTCAAGTGCCT 60.036 55.000 0.00 0.00 33.94 4.75
7176 9048 1.028868 GGATGTGCTCCTCAAGTGCC 61.029 60.000 0.00 0.00 41.29 5.01
7177 9049 1.028868 GGGATGTGCTCCTCAAGTGC 61.029 60.000 0.00 0.00 44.28 4.40
7178 9050 0.393537 GGGGATGTGCTCCTCAAGTG 60.394 60.000 0.00 0.00 44.94 3.16
7179 9051 1.994463 GGGGATGTGCTCCTCAAGT 59.006 57.895 0.00 0.00 44.94 3.16
7180 9052 4.972875 GGGGATGTGCTCCTCAAG 57.027 61.111 0.00 0.00 44.94 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.