Multiple sequence alignment - TraesCS1A01G131100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G131100 chr1A 100.000 1639 0 0 746 2384 171893643 171892005 0.000000e+00 3027.0
1 TraesCS1A01G131100 chr1A 94.303 1650 58 14 746 2384 171901821 171900197 0.000000e+00 2494.0
2 TraesCS1A01G131100 chr1A 100.000 239 0 0 1 239 171894388 171894150 2.170000e-120 442.0
3 TraesCS1A01G131100 chr1A 98.326 239 4 0 1 239 171902305 171902067 1.020000e-113 420.0
4 TraesCS1A01G131100 chr1A 89.381 226 22 2 4 228 490483750 490483526 1.390000e-72 283.0
5 TraesCS1A01G131100 chr1A 88.938 226 23 2 4 228 490491733 490491509 6.490000e-71 278.0
6 TraesCS1A01G131100 chr1A 93.333 135 9 0 1454 1588 222721434 222721568 1.450000e-47 200.0
7 TraesCS1A01G131100 chr1A 86.047 129 16 2 1201 1328 221301518 221301645 1.150000e-28 137.0
8 TraesCS1A01G131100 chr1A 91.000 100 9 0 1227 1326 460255698 460255599 4.130000e-28 135.0
9 TraesCS1A01G131100 chr1A 90.909 99 9 0 1227 1325 221291900 221291998 1.490000e-27 134.0
10 TraesCS1A01G131100 chr1A 95.122 82 4 0 1502 1583 416534583 416534502 1.920000e-26 130.0
11 TraesCS1A01G131100 chr1A 90.000 100 10 0 1227 1326 460227448 460227349 1.920000e-26 130.0
12 TraesCS1A01G131100 chr1A 78.974 195 29 9 1187 1377 56558806 56558620 3.220000e-24 122.0
13 TraesCS1A01G131100 chr1A 87.736 106 10 2 1478 1583 416522433 416522331 1.160000e-23 121.0
14 TraesCS1A01G131100 chr1A 95.775 71 3 0 1418 1488 417461434 417461504 5.380000e-22 115.0
15 TraesCS1A01G131100 chr1A 92.188 64 5 0 1457 1520 170455145 170455082 9.070000e-15 91.6
16 TraesCS1A01G131100 chr1A 89.091 55 6 0 1476 1530 56558383 56558329 4.250000e-08 69.4
17 TraesCS1A01G131100 chr1A 90.000 50 5 0 1476 1525 290859725 290859676 5.500000e-07 65.8
18 TraesCS1A01G131100 chr1A 100.000 30 0 0 1377 1406 342988742 342988771 3.310000e-04 56.5
19 TraesCS1A01G131100 chr4A 93.515 1650 73 17 746 2381 321957539 321959168 0.000000e+00 2423.0
20 TraesCS1A01G131100 chr4A 87.246 1474 139 29 938 2384 503862321 503860870 0.000000e+00 1635.0
21 TraesCS1A01G131100 chr4A 91.479 622 36 7 1776 2384 288841762 288841145 0.000000e+00 839.0
22 TraesCS1A01G131100 chr4A 89.137 626 52 7 1774 2384 409247258 409246634 0.000000e+00 765.0
23 TraesCS1A01G131100 chr4A 89.362 470 46 3 1149 1616 51251663 51252130 2.640000e-164 588.0
24 TraesCS1A01G131100 chr4A 89.485 466 46 3 1149 1613 42206203 42206666 9.490000e-164 586.0
25 TraesCS1A01G131100 chr4A 83.582 603 68 17 1797 2384 353890618 353891204 9.700000e-149 536.0
26 TraesCS1A01G131100 chr4A 97.490 239 6 0 1 239 321957055 321957293 2.210000e-110 409.0
27 TraesCS1A01G131100 chr4A 92.857 224 12 4 4 225 381543284 381543063 2.960000e-84 322.0
28 TraesCS1A01G131100 chr4A 92.478 226 14 3 1 225 33081634 33081857 1.060000e-83 320.0
29 TraesCS1A01G131100 chr4A 86.957 92 11 1 844 934 503862628 503862537 4.190000e-18 102.0
30 TraesCS1A01G131100 chr4A 85.227 88 12 1 1066 1152 371690934 371691021 3.260000e-14 89.8
31 TraesCS1A01G131100 chr2A 90.851 623 41 6 1774 2384 231139538 231140156 0.000000e+00 821.0
32 TraesCS1A01G131100 chr2A 90.851 623 41 6 1774 2384 231175879 231176497 0.000000e+00 821.0
33 TraesCS1A01G131100 chr2A 88.975 644 55 10 1754 2384 345854814 345855454 0.000000e+00 782.0
34 TraesCS1A01G131100 chr2A 88.199 644 54 11 1754 2384 345865582 345866216 0.000000e+00 749.0
35 TraesCS1A01G131100 chr2A 89.574 470 45 4 1149 1616 758014991 758015458 5.670000e-166 593.0
36 TraesCS1A01G131100 chr2A 96.203 237 8 1 1 237 580614256 580614491 1.030000e-103 387.0
37 TraesCS1A01G131100 chr2A 95.299 234 10 1 4 237 125923868 125923636 1.040000e-98 370.0
38 TraesCS1A01G131100 chr2A 94.515 237 12 1 1 237 580606210 580606445 4.840000e-97 364.0
39 TraesCS1A01G131100 chr2A 90.391 281 22 3 1511 1789 616382442 616382165 4.840000e-97 364.0
40 TraesCS1A01G131100 chr2A 89.964 279 22 4 1513 1789 616403539 616403265 2.910000e-94 355.0
41 TraesCS1A01G131100 chr2A 87.681 138 15 2 799 936 379954012 379954147 2.450000e-35 159.0
42 TraesCS1A01G131100 chr2A 84.524 168 18 6 775 936 379962079 379962244 2.450000e-35 159.0
43 TraesCS1A01G131100 chr2A 91.304 115 9 1 1038 1151 507811428 507811542 3.170000e-34 156.0
44 TraesCS1A01G131100 chr2A 91.011 89 8 0 936 1024 153423392 153423304 1.160000e-23 121.0
45 TraesCS1A01G131100 chr2A 87.500 96 10 2 931 1024 486251702 486251797 2.510000e-20 110.0
46 TraesCS1A01G131100 chr2A 91.139 79 5 2 931 1007 379954353 379954431 3.240000e-19 106.0
47 TraesCS1A01G131100 chr2A 86.364 88 11 1 1066 1152 605556817 605556730 7.020000e-16 95.3
48 TraesCS1A01G131100 chr2A 85.227 88 12 1 1066 1152 131580146 131580059 3.260000e-14 89.8
49 TraesCS1A01G131100 chr5A 88.199 644 60 9 1754 2384 239996798 239997438 0.000000e+00 754.0
50 TraesCS1A01G131100 chr5A 86.808 614 64 14 1782 2384 231971606 231970999 0.000000e+00 669.0
51 TraesCS1A01G131100 chr5A 88.936 470 48 4 1149 1616 206294661 206294194 5.710000e-161 577.0
52 TraesCS1A01G131100 chr5A 84.116 554 52 17 1843 2384 87186114 87186643 9.840000e-139 503.0
53 TraesCS1A01G131100 chr5A 83.627 568 58 20 1829 2384 87165832 87166376 3.540000e-138 501.0
54 TraesCS1A01G131100 chr5A 89.008 373 34 5 1243 1613 192729735 192730102 2.790000e-124 455.0
55 TraesCS1A01G131100 chr5A 90.643 342 30 1 1242 1583 192758980 192759319 1.000000e-123 453.0
56 TraesCS1A01G131100 chr5A 96.154 234 8 1 4 237 425631277 425631045 4.810000e-102 381.0
57 TraesCS1A01G131100 chr5A 92.105 228 15 3 1 227 514295050 514295275 3.820000e-83 318.0
58 TraesCS1A01G131100 chr5A 92.035 226 15 3 1 225 514282416 514282639 4.950000e-82 315.0
59 TraesCS1A01G131100 chr3A 87.907 645 59 14 1754 2384 545316831 545316192 0.000000e+00 741.0
60 TraesCS1A01G131100 chr3A 89.606 279 24 3 1513 1789 270852846 270852571 1.360000e-92 350.0
61 TraesCS1A01G131100 chr3A 88.889 279 23 4 1513 1789 270871709 270871437 1.060000e-88 337.0
62 TraesCS1A01G131100 chr3A 91.667 228 16 3 1 227 397336773 397336998 1.780000e-81 313.0
63 TraesCS1A01G131100 chr3A 89.535 86 9 0 939 1024 328426098 328426013 2.510000e-20 110.0
64 TraesCS1A01G131100 chr6A 94.398 482 25 2 938 1419 137304733 137304254 0.000000e+00 739.0
65 TraesCS1A01G131100 chr6A 86.749 649 62 18 1754 2384 246333984 246334626 0.000000e+00 701.0
66 TraesCS1A01G131100 chr6A 81.024 859 104 40 1557 2384 303251808 303250978 1.560000e-176 628.0
67 TraesCS1A01G131100 chr6A 80.513 857 113 37 1557 2384 303076037 303075206 2.030000e-170 608.0
68 TraesCS1A01G131100 chr6A 80.615 650 84 29 1754 2384 487891325 487891951 4.640000e-127 464.0
69 TraesCS1A01G131100 chr6A 80.000 650 87 28 1754 2384 487883169 487883794 7.820000e-120 440.0
70 TraesCS1A01G131100 chr6A 98.291 234 4 0 4 237 137305622 137305389 6.130000e-111 411.0
71 TraesCS1A01G131100 chr6A 88.546 227 22 4 4 228 567249995 567249771 3.020000e-69 272.0
72 TraesCS1A01G131100 chr6A 85.156 128 15 3 1475 1602 262374903 262375026 6.920000e-26 128.0
73 TraesCS1A01G131100 chr6A 95.833 72 3 0 1454 1525 133343366 133343437 1.500000e-22 117.0
74 TraesCS1A01G131100 chr6A 94.444 72 4 0 1454 1525 133351055 133351126 6.970000e-21 111.0
75 TraesCS1A01G131100 chr6A 89.062 64 5 1 1365 1428 219936471 219936532 7.070000e-11 78.7
76 TraesCS1A01G131100 chr6A 93.878 49 2 1 1362 1409 446715050 446715098 3.290000e-09 73.1
77 TraesCS1A01G131100 chr6A 94.872 39 2 0 1089 1127 283074845 283074807 7.120000e-06 62.1
78 TraesCS1A01G131100 chr6A 96.774 31 1 0 1376 1406 532867484 532867514 4.000000e-03 52.8
79 TraesCS1A01G131100 chr7A 91.176 442 37 1 1149 1590 165395053 165394614 1.220000e-167 599.0
80 TraesCS1A01G131100 chr7A 87.952 83 9 1 1066 1147 603080955 603080873 1.950000e-16 97.1
81 TraesCS1A01G131100 chr4D 89.496 238 22 3 4 239 145400262 145400026 4.980000e-77 298.0
82 TraesCS1A01G131100 chr4D 86.975 238 28 3 4 239 145381931 145381695 5.050000e-67 265.0
83 TraesCS1A01G131100 chr4D 86.283 226 25 6 4 225 58001346 58001123 8.520000e-60 241.0
84 TraesCS1A01G131100 chr4D 86.283 226 25 6 1 222 354372794 354373017 8.520000e-60 241.0
85 TraesCS1A01G131100 chr4D 85.841 226 26 6 4 225 57994692 57994469 3.960000e-58 235.0
86 TraesCS1A01G131100 chr7D 87.190 242 25 6 1 237 322241428 322241668 1.090000e-68 270.0
87 TraesCS1A01G131100 chr7D 86.777 242 26 6 1 237 322249069 322249309 5.050000e-67 265.0
88 TraesCS1A01G131100 chr7D 86.404 228 26 5 1 225 307514389 307514614 6.580000e-61 244.0
89 TraesCS1A01G131100 chr7D 85.778 225 27 5 1 222 307522196 307522418 1.420000e-57 233.0
90 TraesCS1A01G131100 chr2D 86.752 234 26 5 4 233 106003811 106003579 3.040000e-64 255.0
91 TraesCS1A01G131100 chr2D 86.842 228 25 5 1 225 165103137 165103362 1.410000e-62 250.0
92 TraesCS1A01G131100 chr3D 86.607 224 24 6 4 223 209227813 209227592 2.370000e-60 243.0
93 TraesCS1A01G131100 chr1D 86.026 229 26 6 1 225 150851052 150851278 8.520000e-60 241.0
94 TraesCS1A01G131100 chr1D 83.884 242 27 7 1 239 312153834 312154066 1.110000e-53 220.0
95 TraesCS1A01G131100 chr1D 81.624 234 38 5 10 239 145832860 145833092 3.130000e-44 189.0
96 TraesCS1A01G131100 chr1D 81.818 220 32 8 10 225 150000042 150000257 6.770000e-41 178.0
97 TraesCS1A01G131100 chr5D 84.581 227 24 10 4 225 164716133 164715913 5.160000e-52 215.0
98 TraesCS1A01G131100 chr6D 78.673 211 40 5 23 230 241606968 241606760 4.130000e-28 135.0
99 TraesCS1A01G131100 chr6D 90.909 99 7 2 1 98 218002574 218002671 5.350000e-27 132.0
100 TraesCS1A01G131100 chr6D 89.899 99 8 2 1 98 217994618 217994715 2.490000e-25 126.0
101 TraesCS1A01G131100 chr6D 90.625 96 7 2 4 98 274169435 274169341 2.490000e-25 126.0
102 TraesCS1A01G131100 chr6D 77.169 219 44 6 16 230 116211669 116211453 3.220000e-24 122.0
103 TraesCS1A01G131100 chr6D 77.251 211 43 5 23 230 116189659 116189451 4.160000e-23 119.0
104 TraesCS1A01G131100 chr6D 77.251 211 43 5 23 230 116197823 116197615 4.160000e-23 119.0
105 TraesCS1A01G131100 chr6D 77.251 211 43 5 23 230 170780933 170781141 4.160000e-23 119.0
106 TraesCS1A01G131100 chrUn 94.737 76 4 0 1513 1588 191801903 191801978 4.160000e-23 119.0
107 TraesCS1A01G131100 chrUn 94.737 76 4 0 1513 1588 212475158 212475083 4.160000e-23 119.0
108 TraesCS1A01G131100 chrUn 77.251 211 42 6 23 230 440696650 440696857 4.160000e-23 119.0
109 TraesCS1A01G131100 chrUn 77.251 211 42 6 23 230 440955257 440955464 4.160000e-23 119.0
110 TraesCS1A01G131100 chrUn 88.542 96 9 2 931 1024 118658624 118658719 5.380000e-22 115.0
111 TraesCS1A01G131100 chr5B 86.842 76 10 0 1302 1377 60563671 60563596 4.220000e-13 86.1
112 TraesCS1A01G131100 chr5B 86.842 76 10 0 1302 1377 60581484 60581409 4.220000e-13 86.1
113 TraesCS1A01G131100 chr1B 86.301 73 7 3 1452 1523 157334234 157334164 2.540000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G131100 chr1A 171892005 171894388 2383 True 1734.5 3027 100.0000 1 2384 2 chr1A.!!$R10 2383
1 TraesCS1A01G131100 chr1A 171900197 171902305 2108 True 1457.0 2494 96.3145 1 2384 2 chr1A.!!$R11 2383
2 TraesCS1A01G131100 chr4A 321957055 321959168 2113 False 1416.0 2423 95.5025 1 2381 2 chr4A.!!$F6 2380
3 TraesCS1A01G131100 chr4A 503860870 503862628 1758 True 868.5 1635 87.1015 844 2384 2 chr4A.!!$R4 1540
4 TraesCS1A01G131100 chr4A 288841145 288841762 617 True 839.0 839 91.4790 1776 2384 1 chr4A.!!$R1 608
5 TraesCS1A01G131100 chr4A 409246634 409247258 624 True 765.0 765 89.1370 1774 2384 1 chr4A.!!$R3 610
6 TraesCS1A01G131100 chr4A 353890618 353891204 586 False 536.0 536 83.5820 1797 2384 1 chr4A.!!$F4 587
7 TraesCS1A01G131100 chr2A 231139538 231140156 618 False 821.0 821 90.8510 1774 2384 1 chr2A.!!$F1 610
8 TraesCS1A01G131100 chr2A 231175879 231176497 618 False 821.0 821 90.8510 1774 2384 1 chr2A.!!$F2 610
9 TraesCS1A01G131100 chr2A 345854814 345855454 640 False 782.0 782 88.9750 1754 2384 1 chr2A.!!$F3 630
10 TraesCS1A01G131100 chr2A 345865582 345866216 634 False 749.0 749 88.1990 1754 2384 1 chr2A.!!$F4 630
11 TraesCS1A01G131100 chr5A 239996798 239997438 640 False 754.0 754 88.1990 1754 2384 1 chr5A.!!$F5 630
12 TraesCS1A01G131100 chr5A 231970999 231971606 607 True 669.0 669 86.8080 1782 2384 1 chr5A.!!$R2 602
13 TraesCS1A01G131100 chr5A 87186114 87186643 529 False 503.0 503 84.1160 1843 2384 1 chr5A.!!$F2 541
14 TraesCS1A01G131100 chr5A 87165832 87166376 544 False 501.0 501 83.6270 1829 2384 1 chr5A.!!$F1 555
15 TraesCS1A01G131100 chr3A 545316192 545316831 639 True 741.0 741 87.9070 1754 2384 1 chr3A.!!$R4 630
16 TraesCS1A01G131100 chr6A 246333984 246334626 642 False 701.0 701 86.7490 1754 2384 1 chr6A.!!$F4 630
17 TraesCS1A01G131100 chr6A 303250978 303251808 830 True 628.0 628 81.0240 1557 2384 1 chr6A.!!$R3 827
18 TraesCS1A01G131100 chr6A 303075206 303076037 831 True 608.0 608 80.5130 1557 2384 1 chr6A.!!$R2 827
19 TraesCS1A01G131100 chr6A 137304254 137305622 1368 True 575.0 739 96.3445 4 1419 2 chr6A.!!$R5 1415
20 TraesCS1A01G131100 chr6A 487891325 487891951 626 False 464.0 464 80.6150 1754 2384 1 chr6A.!!$F8 630
21 TraesCS1A01G131100 chr6A 487883169 487883794 625 False 440.0 440 80.0000 1754 2384 1 chr6A.!!$F7 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 1153 0.108585 TCCTTTTTCCTCACAGCGCT 59.891 50.0 2.64 2.64 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2281 0.252375 ATGCAAAAGATGGTGGGGCT 60.252 50.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 6.062258 TCGGATTCCTACTCCTTTTCAAAT 57.938 37.500 0.30 0.00 0.00 2.32
176 177 6.161381 GGAATGAGCACATTTTTGTGAATCT 58.839 36.000 10.81 0.00 45.30 2.40
863 867 3.866582 CATCCCCGCACTCCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
864 868 4.095400 ATCCCCGCACTCCCTCCT 62.095 66.667 0.00 0.00 0.00 3.69
936 1153 0.108585 TCCTTTTTCCTCACAGCGCT 59.891 50.000 2.64 2.64 0.00 5.92
1072 1289 4.115199 GTGGCCATTCCCTCGCCT 62.115 66.667 9.72 0.00 43.42 5.52
1073 1290 3.338250 TGGCCATTCCCTCGCCTT 61.338 61.111 0.00 0.00 43.42 4.35
1074 1291 2.517166 GGCCATTCCCTCGCCTTC 60.517 66.667 0.00 0.00 39.70 3.46
1075 1292 2.517166 GCCATTCCCTCGCCTTCC 60.517 66.667 0.00 0.00 0.00 3.46
1076 1293 3.049080 GCCATTCCCTCGCCTTCCT 62.049 63.158 0.00 0.00 0.00 3.36
1077 1294 1.147153 CCATTCCCTCGCCTTCCTC 59.853 63.158 0.00 0.00 0.00 3.71
1078 1295 1.147153 CATTCCCTCGCCTTCCTCC 59.853 63.158 0.00 0.00 0.00 4.30
1079 1296 1.003573 ATTCCCTCGCCTTCCTCCT 59.996 57.895 0.00 0.00 0.00 3.69
1080 1297 1.051556 ATTCCCTCGCCTTCCTCCTC 61.052 60.000 0.00 0.00 0.00 3.71
1081 1298 2.042435 CCCTCGCCTTCCTCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
1082 1299 1.230497 CCCTCGCCTTCCTCCTCTA 59.770 63.158 0.00 0.00 0.00 2.43
1083 1300 1.110518 CCCTCGCCTTCCTCCTCTAC 61.111 65.000 0.00 0.00 0.00 2.59
1084 1301 1.448922 CCTCGCCTTCCTCCTCTACG 61.449 65.000 0.00 0.00 0.00 3.51
1085 1302 2.065906 CTCGCCTTCCTCCTCTACGC 62.066 65.000 0.00 0.00 0.00 4.42
1086 1303 2.816012 GCCTTCCTCCTCTACGCC 59.184 66.667 0.00 0.00 0.00 5.68
1087 1304 2.058595 GCCTTCCTCCTCTACGCCA 61.059 63.158 0.00 0.00 0.00 5.69
1138 1378 3.430862 GGCGCGCCAAGTTCATCA 61.431 61.111 43.55 0.00 35.81 3.07
1169 1409 0.887836 CTTGCTGTTGCTGCTCCTCA 60.888 55.000 0.00 0.00 40.48 3.86
1223 1463 3.807538 GGACGAGTGCGACCGCTA 61.808 66.667 15.61 0.00 41.97 4.26
1350 1590 1.005037 CACGAGGCTGCCAAGTACA 60.005 57.895 22.65 0.00 0.00 2.90
1360 1600 3.798889 GCTGCCAAGTACATCTACGCATA 60.799 47.826 0.00 0.00 32.44 3.14
1406 1646 2.818432 ACGAGAACAACTACCATCGACT 59.182 45.455 0.00 0.00 34.46 4.18
1407 1647 3.119919 ACGAGAACAACTACCATCGACTC 60.120 47.826 0.00 0.00 34.46 3.36
1545 1785 1.599071 CGCCGATTAGTACGACTACCA 59.401 52.381 0.00 0.00 28.93 3.25
1583 1823 0.944311 CAAGACCGGACCGACAAGTG 60.944 60.000 17.49 2.78 0.00 3.16
1785 2028 6.035843 ACAACTACGAAACGAGAACAACTAA 58.964 36.000 0.00 0.00 0.00 2.24
1827 2074 3.251245 CGTCTACTTCTCCTACATCGCAT 59.749 47.826 0.00 0.00 0.00 4.73
1832 2079 2.776312 TCTCCTACATCGCATCGAAC 57.224 50.000 0.00 0.00 39.99 3.95
2307 2605 2.904697 GGATTCGTTTATCCGACCCT 57.095 50.000 0.00 0.00 36.42 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
863 867 4.559063 CCCTCCCTGGCGATGCAG 62.559 72.222 0.00 0.00 0.00 4.41
936 1153 3.071206 GCTCGAGGAGAGGCCACA 61.071 66.667 15.58 0.00 46.91 4.17
1061 1278 1.003573 AGGAGGAAGGCGAGGGAAT 59.996 57.895 0.00 0.00 0.00 3.01
1065 1282 1.448922 CGTAGAGGAGGAAGGCGAGG 61.449 65.000 0.00 0.00 0.00 4.63
1066 1283 2.026522 CGTAGAGGAGGAAGGCGAG 58.973 63.158 0.00 0.00 0.00 5.03
1067 1284 2.119655 GCGTAGAGGAGGAAGGCGA 61.120 63.158 0.00 0.00 0.00 5.54
1068 1285 2.413765 GCGTAGAGGAGGAAGGCG 59.586 66.667 0.00 0.00 0.00 5.52
1069 1286 2.058595 TGGCGTAGAGGAGGAAGGC 61.059 63.158 0.00 0.00 0.00 4.35
1070 1287 1.677637 GGTGGCGTAGAGGAGGAAGG 61.678 65.000 0.00 0.00 0.00 3.46
1071 1288 0.684805 AGGTGGCGTAGAGGAGGAAG 60.685 60.000 0.00 0.00 0.00 3.46
1072 1289 0.970937 CAGGTGGCGTAGAGGAGGAA 60.971 60.000 0.00 0.00 0.00 3.36
1073 1290 1.379977 CAGGTGGCGTAGAGGAGGA 60.380 63.158 0.00 0.00 0.00 3.71
1074 1291 3.082579 GCAGGTGGCGTAGAGGAGG 62.083 68.421 0.00 0.00 0.00 4.30
1075 1292 2.496817 GCAGGTGGCGTAGAGGAG 59.503 66.667 0.00 0.00 0.00 3.69
1076 1293 3.075005 GGCAGGTGGCGTAGAGGA 61.075 66.667 0.00 0.00 46.16 3.71
1077 1294 4.162690 GGGCAGGTGGCGTAGAGG 62.163 72.222 0.00 0.00 46.16 3.69
1078 1295 4.514577 CGGGCAGGTGGCGTAGAG 62.515 72.222 0.00 0.00 46.16 2.43
1138 1378 0.625683 ACAGCAAGGGGGAGGATGAT 60.626 55.000 0.00 0.00 0.00 2.45
1350 1590 4.399618 ACTTGGCGATATCTATGCGTAGAT 59.600 41.667 27.25 27.25 46.71 1.98
1360 1600 2.304092 TCGTGGTACTTGGCGATATCT 58.696 47.619 0.34 0.00 0.00 1.98
1583 1823 0.604243 TGTACACATGACGTTGGGGC 60.604 55.000 0.00 0.00 0.00 5.80
1815 2062 1.002792 CGAGTTCGATGCGATGTAGGA 60.003 52.381 0.00 0.00 43.02 2.94
1832 2079 1.108776 TGTTATCGGAGGGGTTCGAG 58.891 55.000 0.00 0.00 38.83 4.04
2012 2281 0.252375 ATGCAAAAGATGGTGGGGCT 60.252 50.000 0.00 0.00 0.00 5.19
2196 2476 5.237127 TGATGCGGATGACATGAATAAGTTC 59.763 40.000 0.00 0.00 34.85 3.01
2202 2482 3.746940 TCATGATGCGGATGACATGAAT 58.253 40.909 15.80 0.00 43.56 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.